AlfalfaGEDB | MS.gene36689

M. sativa cultivar XinJiangDaYe / MS.gene36689

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36689.t1	RHN39207.1	83.6	134	22	0	1	134	363	496	6.20E-54	220.3

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36689.t1	C0LGQ7	53.8	132	55	1	3	134	767	892	4.8e-31	135.6

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36689.t1	A0A072TLG4	83.6	134	22	0	1	134	772	905	4.5e-54	220.3

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36689.t1	MTR_8g015290	83.088	136	22	1	2	136	241	376	1.03e-73	225
MS.gene36689.t1	MTR_8g015340	83.582	134	22	0	1	134	772	905	6.05e-70	226
MS.gene36689.t1	MTR_2g100450	63.542	96	35	0	5	100	546	641	4.39e-32	120
MS.gene36689.t1	MTR_2g100450	63.542	96	35	0	5	100	751	846	7.83e-32	119
MS.gene36689.t1	MTR_8g015010	44.094	127	66	2	8	133	795	917	3.02e-31	118
MS.gene36689.t1	MTR_8g015100	41.732	127	69	2	8	133	443	565	2.42e-30	115
MS.gene36689.t1	MTR_8g015100	41.732	127	69	2	8	133	660	782	3.80e-30	115
MS.gene36689.t1	MTR_8g028115	40.800	125	69	2	7	130	101	221	6.93e-29	106
MS.gene36689.t1	MTR_8g015040	45.946	111	59	1	8	117	797	907	2.67e-28	109
MS.gene36689.t1	MTR_8g015150	47.115	104	54	1	8	110	495	598	1.37e-27	107

Showing 1 to 10 of 78 entries

Previous1 2 3 4 5…8Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36689.t1	AT4G20450	53.788	132	55	1	3	134	767	892	9.14e-37	134
MS.gene36689.t1	AT1G51800	53.030	132	60	2	3	133	761	891	1.35e-36	133
MS.gene36689.t1	AT1G51880	59.048	105	43	0	3	107	759	863	2.50e-36	132
MS.gene36689.t1	AT1G51880	59.048	105	43	0	3	107	741	845	2.59e-36	132
MS.gene36689.t1	AT1G51880	59.048	105	43	0	3	107	767	871	2.60e-36	132
MS.gene36689.t1	AT2G28960	49.630	135	60	2	3	134	617	746	2.63e-36	132
MS.gene36689.t1	AT2G28960	49.630	135	60	2	3	134	749	878	3.93e-36	132
MS.gene36689.t1	AT1G51890	59.048	105	43	0	3	107	473	577	4.70e-36	131
MS.gene36689.t1	AT1G51890	59.048	105	43	0	3	107	767	871	8.73e-36	131
MS.gene36689.t1	AT1G51890	59.048	105	43	0	3	107	681	785	9.43e-36	130

Showing 1 to 10 of 116 entries

Previous1 2 3 4 5…12Next

Find 31 sgRNAs with CRISPR-Local

Find 41 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTATGTTTACAGTTT+TGG	0.230925	8.2:-77924385	MS.gene36689:CDS
AAATGAAGGTCCAATTGAGT+TGG	0.508594	8.2:-77924065	MS.gene36689:CDS
ACAAGACTCACATAAGTCAG+TGG	0.649111	8.2:-77924309	MS.gene36689:CDS
ACTGAACTCGGGCCCGAATT+AGG	0.323312	8.2:-77924025	MS.gene36689:intron
ATAAAGGTTCTACCTAATTC+GGG	0.476466	8.2:+77924013	None:intergenic
CAAGACTCACATAAGTCAGT+GGG	0.631950	8.2:-77924308	MS.gene36689:CDS
CATAAAGGTTCTACCTAATT+CGG	0.230389	8.2:+77924012	None:intergenic
CGAGTTCAGTTGTGAGATTG+AGG	0.489163	8.2:+77924038	None:intergenic
CTCAATCTCACAACTGAACT+CGG	0.402387	8.2:-77924037	MS.gene36689:CDS
CTGCAGAATTAGCCCGAAAA+GGG	0.478543	8.2:-77924108	MS.gene36689:CDS

Showing 1 to 10 of 31 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATAAAGGTTCTACCTAATTC+GGG	+	chr8.2:77924249-77924268	None:intergenic	30.0%
CATAAAGGTTCTACCTAATT+CGG	+	chr8.2:77924250-77924269	None:intergenic	30.0%
GGTGGTAAAACTAAAAATGA+AGG	-	chr8.2:77924180-77924199	MS.gene36689:CDS	30.0%
AAATGAAGGTCCAATTGAGT+TGG	-	chr8.2:77924194-77924213	MS.gene36689:CDS	35.0%
TTCACTACTTCACTCATGAT+TGG	+	chr8.2:77924111-77924130	None:intergenic	35.0%
ACAAGACTCACATAAGTCAG+TGG	-	chr8.2:77923950-77923969	MS.gene36689:intron	40.0%
CAAGACTCACATAAGTCAGT+GGG	-	chr8.2:77923951-77923970	MS.gene36689:intron	40.0%
CTCAATCTCACAACTGAACT+CGG	-	chr8.2:77924222-77924241	MS.gene36689:CDS	40.0%
GAAAGCTGTTGAGATAGGAA+TGG	-	chr8.2:77924056-77924075	MS.gene36689:CDS	40.0%
GAGTTCAGTTGTGAGATTGA+GGG	+	chr8.2:77924223-77924242	None:intergenic	40.0%

Showing 1 to 10 of 41 entries

Previous1 2 3 4 5Next

Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	77923850	77924431	77923850	ID=MS.gene36689
chr8.2	mRNA	77923850	77924431	77923850	ID=MS.gene36689.t1;Parent=MS.gene36689
chr8.2	exon	77924026	77924431	77924026	ID=MS.gene36689.t1.exon1;Parent=MS.gene36689.t1
chr8.2	CDS	77924026	77924431	77924026	ID=cds.MS.gene36689.t1;Parent=MS.gene36689.t1
chr8.2	exon	77923850	77923914	77923850	ID=MS.gene36689.t1.exon2;Parent=MS.gene36689.t1
chr8.2	CDS	77923850	77923914	77923850	ID=cds.MS.gene36689.t1;Parent=MS.gene36689.t1

Gene Sequence

>MS.gene36689

ATGATATCAAACAGGTTAACCGAGAAAAGTTATGTTTACAGTTTTGGAGTTGTTCTTTTGGAGATAATCACTAGTCAACCTGCCATAACAAAAACACCTGACAAGACTCACATAAGTCAGTGGGTTAGATCAATGCTTTATAATGGGGATATAAAGAATATTGTTGACTCAAGATTACTACAAGATTTTGATACTAACTATGCATGGAAAGCTGTTGAGATAGGAATGGCTTGCGTGTCCACAAATTCTTCCGATAGGCCAATCATGAGTGAAGTAGTGAACGAGCTAAAGGAGTGTTTGGCTGCAGAATTAGCCCGAAAAGGGGCTGGTGGTGGTAAAACTAAAAATGAAGGTCCAATTGAGTTGGTTTCCCTCAATCTCACAACTGAACTCGGGCCCGAATTAGGTAGAACCTTTATGAATGATGCTAAAAATAATACTTTTGTTTGTTGTTGTCCATTTCATTTTCTGTTTCATAAGTATCTTATAATATTTTTACTCACTTTTGGTGTAACAGAGTGTGAAGTATTTTGTTGCAGTTCAATATCTATGTTTCTTTTAGTGAGAACTACTGAAGACTAA

Protein sequence

>MS.gene36689.t1

MISNRLTEKSYVYSFGVVLLEIITSQPAITKTPDKTHISQWVRSMLYNGDIKNIVDSRLLQDFDTNYAWKAVEIGMACVSTNSSDRPIMSEVVNELKECLAAELARKGAGGGKTKNEGPIELVSLNLTTELGPELECEVFCCSSISMFLLVRTTED