AlfalfaGEDB | MS.gene36706

M. sativa cultivar XinJiangDaYe / MS.gene36706

KEGG: K15128
GO: GO:0003674 GO:0003712 GO:0005575 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF04934.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36706.t1	XP_013444227.1	98.8	248	3	0	1	248	1	248	1.10E-132	482.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36706.t1	F4IXJ7	58.0	276	74	3	14	248	24	298	1.3e-73	277.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36706.t1	A0A072TL70	98.8	248	3	0	1	248	1	248	7.7e-133	482.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene36706.t1	TR	MED6

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36706.t1	MTR_8g015230	98.790	248	3	1	248	1	248	0.0	507
MS.gene36706.t1	MTR_8g015230	100.000	135	0	1	135	1	135	5.01e-100	289
MS.gene36706.t1	MTR_0361s0030	100.000	103	0	78	180	1	103	1.01e-69	209

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36706.t1	AT3G21350	68.085	235	74	1	14	248	24	257	1.76e-103	301
MS.gene36706.t1	AT3G21350	57.971	276	74	3	14	248	24	298	4.46e-95	281

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Find 63 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATAATACGCAAGCAT+TGG	0.491629	8.2:-78110868	None:intergenic
AAGACGAGGTTACGATCGAG+TGG	0.652209	8.2:-78110569	None:intergenic
AAGCGAAGTAATCGAAGACG+AGG	0.677731	8.2:-78110583	None:intergenic
AAGTTGGAGAAGATAGGATA+TGG	0.422814	8.2:+78111612	MS.gene36706:CDS
AATGCTTGCGTATTATATTT+TGG	0.164373	8.2:+78110870	MS.gene36706:CDS
AATGGTGGCGGAGGCGGAGC+AGG	0.400010	8.2:-78114855	None:intergenic
AATTACGTACGTGAGTTGAG+AGG	0.602924	8.2:-78110675	None:intergenic
ACATACCCTTCTGGAAATGG+TGG	0.643798	8.2:-78114870	None:intergenic
AGCATTGGAGTAACTTTATC+AGG	0.310095	8.2:-78110853	None:intergenic
AGTACCGACGGCGCAACCAC+CGG	0.490492	8.2:+78110493	MS.gene36706:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGTGATAGAAACTTTGC+AGG	+	chr8.2:78111858-78111877	MS.gene36706:intron	30.0%
AAGCTTGATTTCACAATAGA+AGG	-	chr8.2:78112142-78112161	None:intergenic	30.0%
AATCTCAAATATTAGTGTCG+TGG	+	chr8.2:78111057-78111076	MS.gene36706:intron	30.0%
AATGTGATAGAAACTTTGCA+GGG	+	chr8.2:78111859-78111878	MS.gene36706:intron	30.0%
AATTCTAGCAGCAAAAACAT+TGG	-	chr8.2:78110926-78110945	None:intergenic	30.0%
AATTGGAAGGATTAAATAGG+AGG	-	chr8.2:78113475-78113494	None:intergenic	30.0%
ACTAAGAAGAATAGAAGTCT+TGG	+	chr8.2:78114520-78114539	MS.gene36706:intron	30.0%
AGAAAACTTTGTTGAGGTAT+AGG	+	chr8.2:78112717-78112736	MS.gene36706:intron	30.0%
AGGAGGATATTAATTTACTC+AGG	-	chr8.2:78113458-78113477	None:intergenic	30.0%
AGGATTAGGAAAATCCTATT+CGG	-	chr8.2:78114428-78114447	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	78110458	78115010	78110458	ID=MS.gene36706
chr8.2	mRNA	78110458	78115010	78110458	ID=MS.gene36706.t1;Parent=MS.gene36706
chr8.2	exon	78110458	78110687	78110458	ID=MS.gene36706.t1.exon1;Parent=MS.gene36706.t1
chr8.2	CDS	78110458	78110687	78110458	ID=cds.MS.gene36706.t1;Parent=MS.gene36706.t1
chr8.2	exon	78110771	78110945	78110771	ID=MS.gene36706.t1.exon2;Parent=MS.gene36706.t1
chr8.2	CDS	78110771	78110945	78110771	ID=cds.MS.gene36706.t1;Parent=MS.gene36706.t1
chr8.2	exon	78111564	78111633	78111564	ID=MS.gene36706.t1.exon3;Parent=MS.gene36706.t1
chr8.2	CDS	78111564	78111633	78111564	ID=cds.MS.gene36706.t1;Parent=MS.gene36706.t1
chr8.2	exon	78112954	78113063	78112954	ID=MS.gene36706.t1.exon4;Parent=MS.gene36706.t1
chr8.2	CDS	78112954	78113063	78112954	ID=cds.MS.gene36706.t1;Parent=MS.gene36706.t1
chr8.2	exon	78114849	78115010	78114849	ID=MS.gene36706.t1.exon5;Parent=MS.gene36706.t1
chr8.2	CDS	78114849	78115010	78114849	ID=cds.MS.gene36706.t1;Parent=MS.gene36706.t1

Gene Sequence

>MS.gene36706

ATGGCGACACCGGGAATGGGAATGTTAGACGGCGGAGTACCGACGGCGCAACCACCGGGAACAGACATGACCGGAATATGCTTCAGAGATCAATTATGGCTAAACACATATCCACTCGATCGTAACCTCGTCTTCGATTACTTCGCTTTATCACCTTTCTACGATTGGACTTCTAACAACGAACAACTCCGAATGCGTTCTCATCATCCACTTGATTCCTCTCAACTCACGTACGTAATTCCCGTAACCTAACCTAATTTTCATTCTCAATTTCAATTTCAATTTTTCACTTTAACGATTTTTAGGGTTTCAGGAAAATGATTGGTATAGAATATGTGTTGAGTGAAGTTATGGAACCTCATCTTTTTATCATGAAGAAGCAAAAGAGGGATAGTCCTGATAAAGTTACTCCAATGCTTGCGTATTATATTTTGGATGGTTCTATTTATCAAGCTCCTCAATTATCCAATGTTTTTGCTGCTAGAATTGTATGTTCAATTTCTTTCTTATTACCATCTTTTCTAATTTTATTCAACAAACCTTATGTAGACCGGACACTGACACATCGACATTAGTATTAGTTTATAAAAATGAAATGTAATCTCAAATATTAGTGTCGTGGCGGTGGTATGAGATATTATTTGACAGATATATGTCATAAGTCACTGAACACAACTTAATATGAAGTGTTAGTGTATGTTTGGTTCCACTTTTGGAGGAGACAAAGTTGATTCTAGATGTGTAGAATTGATTTTGACGTGTTTGATTTGCTTAAAGTAGAGTTGATTTTGCCACAAGAATTGATTCTACTTGAAACTAGCAATCTAGCTTATGATTCTAGAATTGATTTTTACACTCAAATTTATATTTCAACTCACTTTCACATAAATGTATCAAAACATAAATCACTTTACCTTCAACTCAATTGTAGCAAGAATCAATTTTACAAAATCAAATTTTCTCACTGCAGAACCAAACTTACACTTAGTGCTACATACATACCTTGTAGGGTTATCTAGTTTCGCTTTTAGTAGTTTTTTTATTTCAAATATTTGGTGTGGTTTTTTTTTTTTTTTTTAATAATGTTTGTGACGTTGATCTTGTAGGGAAGGGCACTATATTATATTGAAAAGGCATTTACTACAGCTGCATCTAAGTTGGAGAAGATAGGATATGGTAAGCTCGATTTTTTTCCTTTCTCTTTTGGTTTGGAAAAATAAAATGTTTGTTACTCACGAAAACAAGGTTTTAAATTGCGATTGTGTCATGATTTTTGATATGATGGAGAATCACAGTCAAATGTTGTTTAATTGCGCTTGCGTTGCAATTGTGGAGATGTTAAGAACTTTGATGTCAGTGGCCCATAGTGTGGCTGTGGACCTTTCTTAGACCTTGTATAAAAATGTGATAGAAACTTTGCAGGGTTTGAAAAATTGTATTGCTGAAGCTATACAACTTTATTAAGCAATTTTGTTTATGGAGAACCGTTACACATTTATAGTTAACAGTGTTTGTTTGGGCTGTTCAAACAACTCTTTAGAACCGAAATGAACCAAACTGCTATTAAAAAAACTGATCTGCTTACGTAATTTACTAACTGTTACTGAATCATGTTTAATATGTCAGTTCTCTAGCTGAACTTGTAATGCCTAGAGTTCGGTGAGCTGCGACCAACAGTGAACCTTCTATTGTGAAATCAAGCTTCAGGCCTTAGAACAATAACAGTAACATGAGTTAATTCATATCACCTAGATTTATCACCTCATGGTGATTTTGTTTGAGTGCAATTCCCCTTTTTGCATAATTTCGATAGATTGAAGTTTTTTTCTTTTTGAATCACAAGCTCATGATATTGCTATTACGATGTGATGGTTAGCACTTAGCCGATACTATTCACTTAATGGGACAGGTGTTTCTTGCTATGTTGTTTCAATTCTACTTTTCAATTCAGTTTCTTCCACAATTACTATGTAATACACAGTGAGTGGCCTTAGTTTTTGGATTTTGAAAAAAATAAAATGAAATTTAATCTGTTGAAAACCAGTTTGGTTCAGCATTGAAACCATAGTGCACTGAATCACATAACCAGTTTGGTTTGGTTCAGGTGAAACAATTGCAGTTTGGTTCGGTTTTCTCTGACTGCTTTTGTGGTTCGGGTTTCTCGTAAAACCAAACTATTTAAAAGCCTATGTAGCTTTCCTCCCTTTTTCCATTGAAAGGGGATAGCTAGGTAGGTTATTAAATTTTTGTTAAGTTACTAGAAAACTTTGTTGAGGTATAGGATGTTTCATTTACACCATGTATGATGTTGCTATTTGCAAACTGTGGCAAGCAAGGAAATAATACTAGTGTTACTTTGCCATCTGATTTTTCATGCATTCCATTATATCTTATGTTCTTCCTTCCAATCCATGTTCTTGTTGAAATTTTTAACCAATGATTTTATTTATTTTTTGATTCTGTGCTCATTAACGGATTGTGTTTCTTCTGGTTTAGTTGATTCTGAAAACGAGACTACAATTCCGGAACCAAAGGCGGCTAAGGAGACAATTGACTTAAAAGAAATTAAGCGAGTGGATCATATTCTTGCTTCCTTGCAACGCAAGGTGAGTTGATATATTCTTTCCATTGTGTACTTTTCAAACAATTACATAGCACATCGTTAGAGGTTTATTAAAATTTTAATAAAAAAGAAAGGGATAGGTAACATTGAATTAAAACTTGTGTCCCAAGTATTTTATGAAATTGTTTATTTATGAAATAATTTGAACTATTTATGGAAAATGCTTTATGTCATGTATTCTTAACACCCACAAAAGTCACGGCGATTTCTGCAAAATCAAGATTCACTTTTTTCTATTTTTAGTCAATATTTTTTTTTAAGAAAATCAATAAAAATACGTTTATTTTTGTGCGATTTGTGAGGTTTATTATTCGTACTGAATAACACTGCCCAATATTTATAAACTGATCATCGTTCTACATTCTGTCAAAAGTCCTGAGTAAATTAATATCCTCCTATTTAATCCTTCCAATTAATTAAAAGATCAAAGTATAAAACATGATTGTTATTCGCATGCTTGCATGGGGAAACACATCATGAATAGTGGCTTCCATTTCCTGGCATTACTTCGAGTTTCCCCGTTGTGGCTGCCATACAAGTGGTAAATCACGTCTTTCGCAGCTGCAACTTCGAGGGCAATCGAAAACAGTCCTTTTCCCATCTCATCACAATCTTACTGATTAGTAGTTTGTGGGTAGAACAATGAGATTTTGTACCTCTTTTTTCAGAAACATATAGAAAGTTAAAAACCCTTAGTCAGCCTCTCATGTTCAACCCCCAGAGCCCTTTTTTTCCCGAGCACACTGTTCACCGCATTGTTCCGGGCATAACATGCCGCACCTGCACGCGCACCCTATTCTTCACATGCTTGGTTTTCTGTTTCTGACTTTACAACCTCTATTCTTCATGTGCAGGTCTGTCCTTTTATGTTGTTCTGTCAAACTATTCTATTTCTAACCATAGGGCTTCTTTGAGTATTCCTTTATGTTGTTCTGTCAAACTATTCCATTTCTAACCGTAGGGCTTCTTTGAGTATTCCGACTCCTCATTGGTTACTAGTAATGATAATGATATTATCCTGTGTATTAACTCAAGACTTGTGCATTTTGATTTTGAATGCAAATTTAGTTTTAAATTAACTTTTTATTTTTTAAGCAATTATATATCTGTAGTATAAATTCTTTAACCTTTATCTAAAATTTCTGTATAGCAGCCTTATTGCTGTGTGTCATCTCACTGTAGCTTTTATGGGGTTGACTGTTACACATTTAATCTATTTATTACAACTTTGGAGTATTATAACTATGAGATTATCCCTTTCATTCTAGGATGACAGTGAAATTAATGTTATCTAAACATTTTTTTCGTTGTTTTCATGTTGTCTGAAGAAAAGTGCAGTGATTACCGAATAGGATTTTCCTAATCCTTCCTTTCTGAGTGGAAGAACATTAAGTTTTTTCTCCTTTTCACAGGGCCAAGAGATTGATCTAGCCATAAGAACTAAGAAGAATAGAAGTCTTGGCCCATAATTACTTCTTTTTTAATTCAATAGGAGCATACAGAACAATTATTTTCTCTTTGCTCTGTTGTCAAAAAGTTATTTGCGGGGTAAAAATTAAAAGATGGTGATCCTTTTGTAAGAGGTTTTACCCAACACAGTTTGTCCTCCTAACTATAGGAATTTAACTAAGTAGTTGTGATTGTGAGTTTGCTGATAAACACAAACTTAGGTTAAACGTAAAATATTATTACAATTTTACTACATTTAACTATTTATTAAGTCTGAACAAATAGCTGATTATAAGTGGGTGTTTACTTGCTGCTGCAGCTTCCACCTGCTCCGCCTCCGCCACCATTTCCAGAAGGGTATGTTCCACCTTCAACAGCAGAAACTGAGAAAGGCCCTGAAACTCAGGAAGCAGCTGAGTCAGTAGGACCTACTGTTGATCCCATACTTGATCAAGGTCCTGCAAAAAGAATGAAATTTTGA

Protein sequence

>MS.gene36706.t1

MATPGMGMLDGGVPTAQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTSNNEQLRMRSHHPLDSSQLTKMIGIEYVLSEVMEPHLFIMKKQKRDSPDKVTPMLAYYILDGSIYQAPQLSNVFAARIGRALYYIEKAFTTAASKLEKIGYVDSENETTIPEPKAAKETIDLKEIKRVDHILASLQRKLPPAPPPPPFPEGYVPPSTAETEKGPETQEAAESVGPTVDPILDQGPAKRMKF