AlfalfaGEDB | MS.gene36768

M. sativa cultivar XinJiangDaYe / MS.gene36768

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36768.t1	XP_003627012.2	91.9	480	15	1	102	557	212	691	2.10E-213	751.9

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36768.t1	Q852L0	71.9	480	108	4	102	556	229	706	2.1e-161	570.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36768.t1	G7LFZ2	91.9	480	15	1	102	557	212	691	1.5e-213	751.9

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36768.t1	MTR_8g014050	92.083	480	14	1	102	557	212	691	0.0	921
MS.gene36768.t1	MTR_3g110240	77.273	484	82	3	102	557	198	681	0.0	783
MS.gene36768.t1	MTR_1g007150	75.826	484	89	3	102	557	201	684	0.0	767
MS.gene36768.t1	MTR_7g006030	71.250	480	112	3	102	556	120	598	0.0	726
MS.gene36768.t1	MTR_7g085540	69.167	480	122	3	102	556	229	707	0.0	700
MS.gene36768.t1	MTR_1g116210	68.333	480	126	3	102	556	197	675	0.0	698
MS.gene36768.t1	MTR_2g039930	37.436	195	92	4	103	270	1	192	5.87e-32	127
MS.gene36768.t1	MTR_2g039930	37.245	196	93	4	102	270	81	273	8.53e-32	128
MS.gene36768.t1	MTR_4g126010	37.245	196	93	5	102	270	81	273	9.98e-32	128
MS.gene36768.t1	MTR_8g102930	41.667	156	85	3	118	270	121	273	1.58e-31	127

Showing 1 to 10 of 31 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36768.t1	AT2G25760	75.155	483	93	2	102	557	191	673	0.0	777
MS.gene36768.t1	AT2G25760	74.280	486	95	3	102	557	191	676	0.0	767
MS.gene36768.t1	AT3G13670	68.595	484	124	3	102	557	220	703	0.0	704
MS.gene36768.t1	AT3G03940	68.542	480	125	3	102	556	222	700	0.0	702
MS.gene36768.t1	AT5G18190	69.167	480	122	3	102	556	212	690	0.0	698
MS.gene36768.t1	AT5G18190	69.167	480	122	3	102	556	212	690	0.0	698
MS.gene36768.t1	AT3G03930	65.714	245	83	1	313	556	43	287	2.46e-117	349
MS.gene36768.t1	AT4G28860	37.313	201	96	5	97	270	76	273	6.83e-33	130
MS.gene36768.t1	AT4G28880	37.811	201	95	5	97	270	76	273	7.97e-33	130
MS.gene36768.t1	AT4G28880	37.811	201	95	5	97	270	76	273	7.97e-33	130

Showing 1 to 10 of 30 entries

Previous1 2 3Next

Find 127 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGCATAGGTTCTCTGG+AGG	0.707203	8.2:+78980222	None:intergenic
AAATACATTTCTCTATTTGA+TGG	0.352583	8.2:-78980126	MS.gene36768:CDS
AAATGGCGGGATAGTACAAC+TGG	0.491011	8.2:-78980623	MS.gene36768:CDS
AAATTGTTCCTGGTAGATCT+TGG	0.375545	8.2:-78980757	MS.gene36768:CDS
AACAAACTCTTTAAAAGGCT+GGG	0.435906	8.2:+78980194	None:intergenic
AAGCTTGTTGGTCATAAAAG+AGG	0.502392	8.2:-78979956	MS.gene36768:CDS
AATAAATACCTGAAAAGATC+AGG	0.451526	8.2:+78980575	None:intergenic
AATACATTTCTCTATTTGAT+GGG	0.458420	8.2:-78980125	MS.gene36768:CDS
ACAAACTCTTTAAAAGGCTG+GGG	0.575409	8.2:+78980195	None:intergenic
ACAAAGGATATCAAGTTTGC+AGG	0.398279	8.2:-78980260	MS.gene36768:CDS

Showing 1 to 10 of 127 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAGCAGTGTCAAAGAT+TGG	+	chr8.2:78980510-78980529	None:intergenic	30.0%
AACATACCATGATATAGTAG+CGG	+	chr8.2:78979051-78979070	None:intergenic	30.0%
AAGACTTATTGGTGTATGAT+GGG	+	chr8.2:78980849-78980868	None:intergenic	30.0%
ACAACCATTGTTTACATTGA+TGG	-	chr8.2:78978290-78978309	MS.gene36768:CDS	30.0%
ACTTTCATATGTGCAGATTA+TGG	-	chr8.2:78979215-78979234	MS.gene36768:CDS	30.0%
AGATGAGAAAAAATTGTTCC+TGG	-	chr8.2:78979732-78979751	MS.gene36768:intron	30.0%
AGGTATTTGAGTAGTTAGTA+GGG	+	chr8.2:78980728-78980747	None:intergenic	30.0%
ATAGATTCACACATATGGTA+TGG	+	chr8.2:78980975-78980994	None:intergenic	30.0%
ATGAAAGTAGTAAGACAAAC+AGG	+	chr8.2:78979203-78979222	None:intergenic	30.0%
ATGCAACATATACACACAAA+AGG	+	chr8.2:78981004-78981023	None:intergenic	30.0%

Showing 1 to 10 of 307 entries

Previous1 2 3 4 5…31Next

Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	78978284	78982237	78978284	ID=MS.gene36768
chr8.2	mRNA	78978284	78982237	78978284	ID=MS.gene36768.t1;Parent=MS.gene36768
chr8.2	exon	78982088	78982237	78982088	ID=MS.gene36768.t1.exon1;Parent=MS.gene36768.t1
chr8.2	CDS	78982088	78982237	78982088	ID=cds.MS.gene36768.t1;Parent=MS.gene36768.t1
chr8.2	exon	78981641	78981793	78981641	ID=MS.gene36768.t1.exon2;Parent=MS.gene36768.t1
chr8.2	CDS	78981641	78981793	78981641	ID=cds.MS.gene36768.t1;Parent=MS.gene36768.t1
chr8.2	exon	78981235	78981290	78981235	ID=MS.gene36768.t1.exon3;Parent=MS.gene36768.t1
chr8.2	CDS	78981235	78981290	78981235	ID=cds.MS.gene36768.t1;Parent=MS.gene36768.t1
chr8.2	exon	78980752	78980846	78980752	ID=MS.gene36768.t1.exon4;Parent=MS.gene36768.t1
chr8.2	CDS	78980752	78980846	78980752	ID=cds.MS.gene36768.t1;Parent=MS.gene36768.t1
chr8.2	exon	78980584	78980650	78980584	ID=MS.gene36768.t1.exon5;Parent=MS.gene36768.t1
chr8.2	CDS	78980584	78980650	78980584	ID=cds.MS.gene36768.t1;Parent=MS.gene36768.t1
chr8.2	exon	78980365	78980494	78980365	ID=MS.gene36768.t1.exon6;Parent=MS.gene36768.t1
chr8.2	CDS	78980365	78980494	78980365	ID=cds.MS.gene36768.t1;Parent=MS.gene36768.t1
chr8.2	exon	78980071	78980289	78980071	ID=MS.gene36768.t1.exon7;Parent=MS.gene36768.t1
chr8.2	CDS	78980071	78980289	78980071	ID=cds.MS.gene36768.t1;Parent=MS.gene36768.t1
chr8.2	exon	78979845	78979975	78979845	ID=MS.gene36768.t1.exon8;Parent=MS.gene36768.t1
chr8.2	CDS	78979845	78979975	78979845	ID=cds.MS.gene36768.t1;Parent=MS.gene36768.t1
chr8.2	exon	78979193	78979367	78979193	ID=MS.gene36768.t1.exon9;Parent=MS.gene36768.t1
chr8.2	CDS	78979193	78979367	78979193	ID=cds.MS.gene36768.t1;Parent=MS.gene36768.t1
chr8.2	exon	78978954	78979044	78978954	ID=MS.gene36768.t1.exon10;Parent=MS.gene36768.t1
chr8.2	CDS	78978954	78979044	78978954	ID=cds.MS.gene36768.t1;Parent=MS.gene36768.t1
chr8.2	exon	78978708	78978865	78978708	ID=MS.gene36768.t1.exon11;Parent=MS.gene36768.t1
chr8.2	CDS	78978708	78978865	78978708	ID=cds.MS.gene36768.t1;Parent=MS.gene36768.t1
chr8.2	exon	78978424	78978612	78978424	ID=MS.gene36768.t1.exon12;Parent=MS.gene36768.t1
chr8.2	CDS	78978424	78978612	78978424	ID=cds.MS.gene36768.t1;Parent=MS.gene36768.t1
chr8.2	exon	78978284	78978343	78978284	ID=MS.gene36768.t1.exon13;Parent=MS.gene36768.t1
chr8.2	CDS	78978284	78978343	78978284	ID=cds.MS.gene36768.t1;Parent=MS.gene36768.t1

Gene Sequence

>MS.gene36768

ATGTTGACAACCATTGTTTACATTGATGGTAAAAGAATGGTAACCTTAATATTAAGTGATGATGGCAACTTGCAAAATGTAGTGGACTGGTGGAAGAAGCAATGTTTCGTTGGGATTAAACATTTAGTGTTGAGTTGTTCAACAGCAACGGTATAATTTTTTGAAAGTTTTTTTTATTGATATTTATTATCATAGTTTATATTGTTAATGATTGATGTATTTCACTAATCAAATACACGTATACAAGTATTCAAATCCAATTCTTCAACTAAATATTCTCAATATCAGAGTAACAAGTATCCAAAGATAGCAAAGTTAAAGACTTGATTGAATATAAAAAGAAACATAGGAAATTATGGTATAATATCTTCATCCTTTAGTTTTGTTTGTACTAGCCAGTAGCCTAGTATTACATCATTACTACTTGTCGTCGTGTACAAGCAGCATCTACCGGGTGGCCCCATTGATCTACGTTTTCCGAAATTTCAACATTTACTTCATCTTGAACTCATTCTTCCTTGGTTTGACTCAAGTTTTCTACTGAGCCTGCTTCACAGATGTCATTTGCTTCAAGTTCTCATTGTTAAAAATGACAAGGTTTGTTTAGTTCTTGAAGCTTTGGTTTATTTAACCTTTTTTCTAAGGAAGTTTATTTAATTTTTTGGTGTAAACCGGATATCCTCCGCCGCACTCAATTGCGGAGACGAGGGGCGGACCTGGACTTGCAATATCACTGTGGCAAAAAAAAATTCCGTCGGTTTACACCGCTACTATATCATGGTATGTTATTGGGTTTTATTTTTTAATCATTTGGGTTTGATTGTTTTTTAATTATTAATTAGTTTGAATGATAATGTAACATTTCTTTTATTTGATGTAACATTTCTTTTATTTGAGTTTGGTTTGTTTGAAGGTTCCTGTTTGTCTTACTACTTTCATATGTGCAGATTATGGATATTCTAGGACCTAGCTTGTATGATGAATGGAATAATAAATCTCACCAGTAAGTCTTTTGTAAGTTATTTGTTAGATGTGCATTAAAGTATATTCCCTGTTGTTAATTTTGACTGTCAATTGTTATGTTAATGTTTCTTTTATCAATTCCAGTATGTCCACTGAAATGGTTGCTTGTATTGCCATTGAAGCAATATCCATATTGGAGAAGATGCACTCTCGAGGGTAATTTGTTACCACTCAATTTCCGTTCATTTCTTTGGGTTATGCCTATGAATAGTGGATAGACACTTTTTGCAAAGCTAGACATTTTCTCTCATTTTCCTATTCTTCCGCTGACATTAGCAATTTACATAAGAATATGTGAATTAAGTTATTTTATAATAAAAATAATTGGACTTATGTTTCTTACACTATATGGTGATGTATATGGGTAGGTATGTGCATGGAGATGTGAAGCCGGAAAATTTTCTGCTTGGCGCCTCTGGGACACCAGATGAGAAAAAATTGTTCCTGGTAGATCTTGGATTGGGTATGTTTTTGATTGATTATTTATTGGTCACATGTAATATTTTCATTTTTGCATCATTTAATTATTCTGTTGGCTTTTTCTGTGCAATTTCGGGCTTGCAGCTACTAAATGGCGGGATAGTACAACTGGTTTGCATAAGGACTATGACCAAAAGCCTGATCTTTTCAGGTATTTATTAGTTTGGGGTTGTGTAGAAAATGTTTAAATATCTGTTCTCCATATTATATTAACTCGTATCATATGAAAAATATTTTCAGGGGCACAGTCCGCTATGCAAGTGTGCATGCACATTTGGGGAGAAATGTAAGCAGGAGGGATGATTTGGAATCTCTTGCATATACACTGATTTTTCTTCTTCGAAGTCGTCTTCCTTGGCAAGGATACCAGGTTTGTCATATTTTAACAACTTTTAGTTTTTACTCTCATATTAAGAATGTCGTTCTTAGACATTTTTTTTCTCAGGGAGAAAACAAAGGATATCAAGTTTGCAGGAAGAAGATGGGAACACCTCCAGAGAACCTATGCTGTTTTTGTCCCCAGCCTTTTAAAGAGTTTGTTGAACATGTAGTGACCTTAAAGTACGATGAAGAGCCCAACTATGCAAAATACATTTCTCTATTTGATGGGATTGTTGGTCCAAACCCAGACATTAGGCCACTGAATACAGAAGGTGCACAAAAGGTATCGATTTTGCCACCACTTGTGTTTTTTTTTAATGTATATACGAAGTTTGTTTTCCAATCTTTGACACTGCTATTTTTTTCTTCTTCTTAAAGCTTGTTGGTCATAAAAGAGGCCGATTGGCTTCAGAAGATGATGATGAACAACCCAAAAAGAAGGTTCGAGTGGGTTTACCAGCGAACCAGTGGATTAGTGTTTACAATGCTCGTAGACCGATGAAACAAAGGTATACACTAATGAAGTATTCTTATAAAATATTCTGACTGCTAAGACACCCTACTAACTACTCAAATACCTCACTAGTAAACTTAGTCACTAGTCTTCTTAGCTTTCCGTTCATTAACCCTCCATATCCTGGGTTTGCCATAATACCCTTATTTGTCATCAGTTGCCTTCCCATCATACACCAATAAGTCTTAAAACTTGTTATATCACATGTGTGATTCTATGCTTATGTGTTTTAAAATTGATGCAAGGGGATGACTTCCATTTCCTCATCTTTAAGATTGTGATTTTTCAACCCATACCATATGTGTGAATCTATTTACACCCTTTTGTGTGTATATGTTGCATCATATGTTTGAATTTCGTTACATTTTTTAATCTTTTGGTTACAAAAGTTGGATGCTAAGGGTTATCCGGGTTTAAAACTTATAGATGAAAGGGGATTTCTACGCATTAAGAGTGGTTTTCTGTGTTGTAGATATCACTACAATGTGTCAAGTACAAGACTATCACAGCACATTGACAAAGGAAATGAGGATGGCTTATATATTAGCAGTGTTGCTTCATCTCAGGGCCTGTGGGCCTTAATAATGGATGCAGGGACAGGTTTCACTTCCCAAGTTTACGAATTCTCCCCCCAATTTTTCCATAAGGTAAATTTAAATCTATTGCCATACATTCTTCTACTTGTGAATTATTAAAATTTCCTGTATAGCACACCAGATATATGCTTGTAGAAATTTTAATCCTAGTTTCAAGGCATGCTTATTATTAACTTAGGGTTTTCTGTTTTTTTTAAAGGAATGGATCATGGAGCAGTGGGAAAAAAAATACTATATCACTGCAGTTGCAGGAATTGCAAATGGGAGTTCATTAGTAGTAATGTCTGAAGGTTGGTTCCTTTTAAGTTGTATATATTGGCTTATGTACTTTGGTAATTCTCCATTTTGCTCTCCGCTAACTTAGGCCATGGATTTCAGGCACCCAGTATTTGCAGCAATCATACAAAGTTAGTGATTCATTTCCTTTCAAATGGATTAAAAAAAAGTGGGATGAGAAATTTTTTGTAACTTCAATGGCCACAGCAGGGCCCAAATGGGGAGTAGTTATGTCTAAAAAGGCAGGGTTTTCAAAACAGGTCATCTTTGGATTGAACTTTTATCTGTCAGTACTTTAGTCATAATGCAACTTAATAGTGTGAATAAATACTTACTTTATGTTTATGTATAATAGGCGGTCGAATTAGATTTTCTGTACCCTAGTGAAGGGATTCACAAGCGGTGGGAGTCTGGTTACCGAATCACATCGACTGCTGCAACTTGGGACCAAGCTGCTTTTGTTCTGAGTATTCCAGAAAAGAAGCTGCAGGACGAAACTCAAGAAACACTAAGGACTACTACTTTTCCTAGTACTCATGTTAAGGTGGGTCATATATATTCACATTTGTTGTCTATGCACATGATTTTCAGTTAATTGCAGTCTGATGATACTTGATTTTACAGGAGAAGTGGGCTAAGAACCTCTACATTGCCTCTATTTGCTATGGACGAACCGTTTCTTGA

Protein sequence

>MS.gene36768.t1

MLTTIVYIDGKRMVTLILSDDGNLQNVVDWWKKQCFVGIKHLVLSCSTATHLPGGPIDLRFPKFQHLLHLELILPWFDSSFLLSLLHRCHLLQVLIVKNDKIMDILGPSLYDEWNNKSHQYVHGDVKPENFLLGASGTPDEKKLFLVDLGLATKWRDSTTGLHKDYDQKPDLFRGTVRYASVHAHLGRNVSRRDDLESLAYTLIFLLRSRLPWQGYQGENKGYQVCRKKMGTPPENLCCFCPQPFKEFVEHVVTLKYDEEPNYAKYISLFDGIVGPNPDIRPLNTEGAQKLVGHKRGRLASEDDDEQPKKKVRVGLPANQWISVYNARRPMKQRYHYNVSSTRLSQHIDKGNEDGLYISSVASSQGLWALIMDAGTGFTSQVYEFSPQFFHKEWIMEQWEKKYYITAVAGIANGSSLVVMSEGTQYLQQSYKVSDSFPFKWIKKKWDEKFFVTSMATAGPKWGVVMSKKAGFSKQAVELDFLYPSEGIHKRWESGYRITSTAATWDQAAFVLSIPEKKLQDETQETLRTTTFPSTHVKEKWAKNLYIASICYGRTVS