AlfalfaGEDB | MS.gene36800

M. sativa cultivar XinJiangDaYe / MS.gene36800

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36800.t1	AET01538.2	97.4	232	6	0	1	232	394	625	5.90E-85	323.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36800.t1	C0LGD6	57.1	238	89	6	1	232	395	625	2.5e-31	137.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36800.t1	A0A072TMZ0	97.4	232	6	0	1	232	401	632	4.3e-85	323.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36800.t1	MTR_8g014690	96.983	232	7	0	1	232	401	632	2.30e-160	460
MS.gene36800.t1	MTR_8g014690	96.983	232	7	0	1	232	394	625	2.76e-158	460
MS.gene36800.t1	MTR_8g014700	86.695	233	26	3	1	232	399	627	8.16e-136	396
MS.gene36800.t1	MTR_8g014700	86.695	233	26	3	1	232	399	627	1.31e-133	397
MS.gene36800.t1	MTR_8g014700	86.695	233	26	3	1	232	399	627	3.30e-133	397
MS.gene36800.t1	MTR_8g014790	85.837	233	28	3	1	232	396	624	1.65e-131	391
MS.gene36800.t1	MTR_8g014930	80.342	234	41	4	1	232	396	626	8.91e-127	374
MS.gene36800.t1	MTR_8g014930	80.342	234	41	4	1	232	391	621	1.07e-124	374
MS.gene36800.t1	MTR_8g014760	79.741	232	43	2	1	232	396	623	1.25e-124	369
MS.gene36800.t1	MTR_8g015150	82.833	233	32	3	1	232	146	371	1.44e-124	366

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36800.t1	AT2G19230	50.424	236	100	5	2	232	401	624	1.13e-65	218
MS.gene36800.t1	AT2G19230	48.305	236	106	4	2	232	401	625	4.65e-65	218
MS.gene36800.t1	AT1G05700	53.361	238	98	6	1	232	395	625	2.28e-63	211
MS.gene36800.t1	AT1G05700	47.348	264	105	5	1	232	395	656	2.45e-60	203
MS.gene36800.t1	AT2G19210	48.117	239	109	7	2	232	400	631	1.07e-58	199
MS.gene36800.t1	AT4G29990	47.257	237	117	4	2	232	395	629	3.25e-58	196
MS.gene36800.t1	AT4G29990	47.679	237	116	5	2	232	395	629	7.87e-58	196
MS.gene36800.t1	AT1G51850	43.028	251	121	4	1	232	387	634	1.53e-55	190
MS.gene36800.t1	AT1G51850	43.028	251	121	4	1	232	367	614	1.78e-55	190
MS.gene36800.t1	AT1G51800	40.562	249	128	4	2	232	395	641	1.88e-54	187

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Find 38 sgRNAs with CRISPR-Local

Find 82 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTATTATTGGAGAAGG+AGG	0.505118	8.1:-82651977	MS.gene36800:CDS
AAAATCCAAGAGAAATCAAA+AGG	0.491798	8.1:+82652460	None:intergenic
AAACAGGTTCACTATCACTG+AGG	0.702118	8.1:-82652778	MS.gene36800:intron
AAACTCAAGTCGCTGTCAAG+CGG	0.635994	8.1:-82651919	MS.gene36800:CDS
ACCAGGAATTTGTCTTCAAG+TGG	0.515998	8.1:-82653198	MS.gene36800:intron
ACTTACAAAGATGTAATTCT+TGG	0.307480	8.1:+82653299	None:intergenic
AGTGTGGATGATGATAACCT+TGG	0.685153	8.1:-82652561	MS.gene36800:CDS
ATTATTGGAGAAGGAGGATT+TGG	0.287014	8.1:-82651971	MS.gene36800:CDS
ATTCCGTCATACAAGGACCA+AGG	0.691805	8.1:+82652544	None:intergenic
CACTTGGAACTAACCCTGTA+AGG	0.476041	8.1:+82652819	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTATTATTGGAGAAGG+AGG	-	chr8.1:82653083-82653102	MS.gene36800:intron	30.0%
AAGAATTAGTATAGCAACAG+TGG	+	chr8.1:82652825-82652844	None:intergenic	30.0%
ATATATTTGCAAATGCAACC+AGG	-	chr8.1:82651845-82651864	MS.gene36800:intron	30.0%
ATCCACACTGAAAAAATCAA+AGG	+	chr8.1:82652488-82652507	None:intergenic	30.0%
GAAACAATGTTGATATTAGG+AGG	+	chr8.1:82652435-82652454	None:intergenic	30.0%
GGATTTGGAAAAGTTTACTT+TGG	-	chr8.1:82653104-82653123	MS.gene36800:intron	30.0%
AAGGTATGCATTCAAACCAA+TGG	+	chr8.1:82652684-82652703	None:intergenic	35.0%
ATTATTGGAGAAGGAGGATT+TGG	-	chr8.1:82653089-82653108	MS.gene36800:intron	35.0%
CTTCTTGAGAGATCAAAAAC+AGG	-	chr8.1:82652266-82652285	MS.gene36800:intron	35.0%
GGAGTAGTGTATTAATCCAT+TGG	-	chr8.1:82652665-82652684	MS.gene36800:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	82651719	82653363	82651719	ID=MS.gene36800
chr8.1	mRNA	82651719	82653363	82651719	ID=MS.gene36800.t1;Parent=MS.gene36800
chr8.1	exon	82653305	82653363	82653305	ID=MS.gene36800.t1.exon1;Parent=MS.gene36800.t1
chr8.1	CDS	82653305	82653363	82653305	ID=cds.MS.gene36800.t1;Parent=MS.gene36800.t1
chr8.1	exon	82653144	82653215	82653144	ID=MS.gene36800.t1.exon2;Parent=MS.gene36800.t1
chr8.1	CDS	82653144	82653215	82653144	ID=cds.MS.gene36800.t1;Parent=MS.gene36800.t1
chr8.1	exon	82652954	82653025	82652954	ID=MS.gene36800.t1.exon3;Parent=MS.gene36800.t1
chr8.1	CDS	82652954	82653025	82652954	ID=cds.MS.gene36800.t1;Parent=MS.gene36800.t1
chr8.1	exon	82652779	82652859	82652779	ID=MS.gene36800.t1.exon4;Parent=MS.gene36800.t1
chr8.1	CDS	82652779	82652859	82652779	ID=cds.MS.gene36800.t1;Parent=MS.gene36800.t1
chr8.1	exon	82652430	82652581	82652430	ID=MS.gene36800.t1.exon5;Parent=MS.gene36800.t1
chr8.1	CDS	82652430	82652581	82652430	ID=cds.MS.gene36800.t1;Parent=MS.gene36800.t1
chr8.1	exon	82651874	82652097	82651874	ID=MS.gene36800.t1.exon6;Parent=MS.gene36800.t1
chr8.1	CDS	82651874	82652097	82651874	ID=cds.MS.gene36800.t1;Parent=MS.gene36800.t1
chr8.1	exon	82651719	82651754	82651719	ID=MS.gene36800.t1.exon7;Parent=MS.gene36800.t1
chr8.1	CDS	82651719	82651754	82651719	ID=cds.MS.gene36800.t1;Parent=MS.gene36800.t1

Gene Sequence

>MS.gene36800

ATGTGGGAAGGCCTAAACTGTAGTATCGATGGCAATAACATCCCAAGAATTACATCTTTGTAAGTTTATAATTCCTTAAATAAACCATATGCATAAACTCAAAAACTACAATTATCCTCTAAAATTATATATTTGCAAATGCAACCAGGAATTTGTCTTCAAGTGGATTGACAGGAGAGATATCATCTGCCATATCAAAGCTCACTATGTTACAGTACTTGTGAGTTCCTAATCTCATTTGGTTAAATGTTGAAATCAAATCTATTCAATTTTGAAATTATTCTCTCTTTATTGGAGATTCAAAATTGTAACTCAGCATTTAAATTGTTTTCTTTCAGGGATTTGTCAAACAATAGCTTAAATGGTTCTATACCTGATTTTCTGATGCAACTCCGGTCACTAAAAGTCTTGTAAGTCCCATGTTGATCCATCAAATGTAATTTCATTGTTTATTAGTATAAAAAATAAAATAAAAAGTGTCATGTATTTGTCCTTTCATGGCAGAAACCTGGGGAAGAACAACCTTACAGGGTTAGTTCCAAGTGGACTTCTTGAGAGATCAAAAACAGGTTCACTATCACTGAGGTATCCTCATACTCAAAGCTATATTAATTCACATTATATTCAAGAAAACGACATATTTTCAATGAGGATTTGTTTTCTTCCTGTTATGTTAATAATAATAAGTTCAGCAAAGATAATTGAGTTTTCTTCCTCCTAATATCAACATTGTTTCACACATAATATGACAATTAATATATAAGCGCCTTTGATTTTTTCAGTGTGGATGATGATAACCTTGGTCCTTGTATGACGGAATCTTGCAAAAAGAAGAACATTGCTGTACCACTTGTTGCATCGTTTTCAGCATTAGTTCTAATCCTTTTGATTTCTCTTGGATTTTGGTTATTCAGAAGACAAAAAAGACAAAAAGGTACTTCTCAGAGGAGTAGTGTATTAATCCATTGGTTTGAATGCATACCTTATAGGTTGTATTAATCACACCAAACACACAAAAAGTGTTTATTTATGAAATCAGTTTTTGTTATATTGTATTGCGAATTGCAGTGATGCCATATTGCGTCCCCATCCGCAATTTAAATCCACTGTTGCTATACTAATTCTTCATGCTTCATGTCTTATAAACAAATTTTATATTTTGTCATTAAAAGGAGTATTTATTTCTGAAATCATATTTTTCTCATAACATGAATTAGAGTTGACTCTCCATAAAACTTTAGCTATATATTGTTTTATTTATCACAGCTGTAGTTACGCCTTCAAATTCTAAGAAAAGGAGTTCAATGAAATCAAAACATCAAAAATTCAGTTACACTGAAATTGTCAATATTACCGATAACTTCAAAACTATTATTGGAGAAGGAGGATTTGGAAAAGTTTACTTTGGCACTCTACAAGACCAAACTCAAGTCGCTGTCAAGCGGCTTTCACCATCATCGATGCAAGGTTATAATGAATTTCAATCAGAGGTTAGACACTGCATTGAAGTTAAAAAACAATATATTTAATTTTTATTTAAGTAATAAATAGATTGCTGCATTATTTTCACAGTTAACTTTGGTAGAGATAATATTAACTCAAAATGCAGGCACAACTTCTAATGATTGTTCATCATAGAAATTTG

Protein sequence

>MS.gene36800.t1

MWEGLNCSIDGNNIPRITSLNLSSSGLTGEISSAISKLTMLQYLDLSNNSLNGSIPDFLMQLRSLKVLNLGKNNLTGLVPSGLLERSKTGSLSLSVDDDNLGPCMTESCKKKNIAVPLVASFSALVLILLISLGFWLFRRQKRQKAVVTPSNSKKRSSMKSKHQKFSYTEIVNITDNFKTIIGEGGFGKVYFGTLQDQTQVAVKRLSPSSMQGYNEFQSEAQLLMIVHHRNL