AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37200.t1 MTR_1g063160 79.888 179 35 1 1 178 1 179 1.16e-101 290
MS.gene37200.t1 MTR_1g047550 78.212 179 38 1 1 178 1 179 4.89e-99 283
MS.gene37200.t1 MTR_1g054265 82.738 168 28 1 1 167 1 168 2.82e-97 279
MS.gene37200.t1 MTR_8g079502 77.711 166 36 1 1 165 1 166 1.50e-89 259
MS.gene37200.t1 MTR_4g131030 68.085 188 42 1 1 170 1 188 3.42e-87 255
MS.gene37200.t1 MTR_8g051580 56.742 178 76 1 1 177 1 178 1.75e-66 201
MS.gene37200.t1 MTR_8g046350 53.293 167 73 2 1 167 1 162 3.49e-54 169
MS.gene37200.t1 MTR_4g094632 40.964 166 81 5 1 163 1 152 7.63e-31 110
MS.gene37200.t1 MTR_3g080940 39.053 169 85 4 1 156 8 171 1.25e-28 105
MS.gene37200.t1 MTR_3g052870 42.029 138 76 2 2 135 9 146 3.26e-28 105
MS.gene37200.t1 MTR_1g105920 47.525 101 50 1 2 99 9 109 2.84e-25 97.8
MS.gene37200.t1 MTR_1g106070 44.248 113 60 1 2 111 9 121 4.19e-25 95.9
MS.gene37200.t1 MTR_1g105910 45.946 111 56 2 2 109 9 118 1.15e-24 96.3
MS.gene37200.t1 MTR_5g045560 33.533 167 92 3 1 151 8 171 1.74e-24 95.9
MS.gene37200.t1 MTR_3g052920 45.045 111 57 2 2 109 9 118 3.09e-24 95.1
MS.gene37200.t1 MTR_1g077360 40.945 127 71 2 2 125 9 134 1.05e-23 93.6
MS.gene37200.t1 MTR_4g094638 43.925 107 56 1 1 103 1 107 1.19e-23 92.0
MS.gene37200.t1 MTR_0121s0100 44.660 103 50 2 2 99 9 109 1.40e-23 90.5
MS.gene37200.t1 MTR_1g012570 44.144 111 58 2 2 109 9 118 2.77e-23 92.8
MS.gene37200.t1 MTR_1g108510 43.564 101 54 1 2 99 9 109 2.95e-23 92.4
MS.gene37200.t1 MTR_3g030770 53.247 77 36 0 2 78 9 85 3.57e-23 92.0
MS.gene37200.t1 MTR_2g030740 54.545 77 35 0 2 78 9 85 4.10e-23 92.0
MS.gene37200.t1 MTR_8g043650 44.144 111 58 2 2 109 9 118 4.23e-23 92.0
MS.gene37200.t1 MTR_2g093190 43.243 111 59 2 2 109 9 118 1.40e-22 90.5
MS.gene37200.t1 MTR_3g030780 41.818 110 61 1 2 108 9 118 1.55e-22 87.8
MS.gene37200.t1 MTR_1g075600 36.424 151 81 3 2 138 9 158 2.62e-22 90.1
MS.gene37200.t1 MTR_2g105290 37.226 137 76 3 1 137 11 137 5.25e-22 87.8
MS.gene37200.t1 MTR_1g108580 42.574 101 55 1 2 99 9 109 6.19e-22 89.0
MS.gene37200.t1 MTR_7g028448 38.346 133 69 3 14 139 24 150 1.29e-21 86.7
MS.gene37200.t1 MTR_4g036915 38.346 133 69 3 14 139 24 150 1.29e-21 86.7
MS.gene37200.t1 MTR_0121s0080 42.149 121 66 2 2 119 9 128 3.72e-21 87.0
MS.gene37200.t1 MTR_2g085280 50.685 73 36 0 2 74 9 81 4.49e-21 86.7
MS.gene37200.t1 MTR_2g085250 50.685 73 36 0 2 74 9 81 4.83e-21 86.7
MS.gene37200.t1 MTR_5g053390 53.623 69 32 0 2 70 9 77 8.69e-21 86.3
MS.gene37200.t1 MTR_5g055100 49.315 73 37 0 2 74 9 81 2.05e-20 85.1
MS.gene37200.t1 MTR_1g105905 45.361 97 50 1 18 111 8 104 1.77e-19 82.4
MS.gene37200.t1 MTR_8g086290 40.909 110 59 3 2 109 12 117 2.62e-19 80.9
MS.gene37200.t1 MTR_0003s0590 50.725 69 34 0 1 69 1 69 2.25e-18 80.1
MS.gene37200.t1 MTR_7g075870 41.121 107 53 3 1 103 1 101 2.82e-18 79.0
MS.gene37200.t1 MTR_3g452380 41.905 105 59 1 1 105 16 118 5.28e-18 79.0
MS.gene37200.t1 MTR_8g087860 44.231 104 54 2 1 103 17 117 8.51e-18 78.2
MS.gene37200.t1 MTR_7g062350 55.224 67 30 0 13 79 32 98 1.17e-17 77.8
MS.gene37200.t1 MTR_7g075870 41.121 107 54 3 1 103 1 102 1.49e-17 77.0
MS.gene37200.t1 MTR_5g066960 56.667 60 26 0 1 60 1 60 1.62e-17 72.8
MS.gene37200.t1 MTR_8g033220 41.489 94 51 1 1 94 1 90 4.05e-17 76.3
MS.gene37200.t1 MTR_8g033220 41.489 94 51 1 1 94 1 90 5.38e-17 75.9
MS.gene37200.t1 MTR_5g066180 40.708 113 52 5 1 104 1 107 6.78e-17 75.5
MS.gene37200.t1 MTR_5g032520 37.838 111 62 2 1 105 1 110 1.07e-16 75.1
MS.gene37200.t1 MTR_2g009890 52.174 69 33 0 1 69 1 69 1.24e-16 75.5
MS.gene37200.t1 MTR_2g017865 42.308 104 56 2 1 103 16 116 2.05e-16 74.7
MS.gene37200.t1 MTR_3g005530 53.226 62 29 0 1 62 1 62 2.64e-16 73.9
MS.gene37200.t1 MTR_1g053070 47.826 69 36 0 1 69 1 69 2.70e-16 74.3
MS.gene37200.t1 MTR_8g033270 53.226 62 29 0 1 62 1 62 4.15e-16 73.9
MS.gene37200.t1 MTR_4g127140 51.429 70 34 0 1 70 11 80 4.24e-16 72.8
MS.gene37200.t1 MTR_3g067875 52.542 59 27 1 18 75 8 66 6.72e-16 68.9
MS.gene37200.t1 MTR_5g032150 36.937 111 63 2 1 105 1 110 9.18e-16 72.4
MS.gene37200.t1 MTR_4g093970 42.857 77 44 0 1 77 27 103 1.56e-15 72.0
MS.gene37200.t1 MTR_5g031000 47.826 69 36 0 1 69 1 69 1.72e-15 71.6
MS.gene37200.t1 MTR_5g031000 47.826 69 36 0 1 69 1 69 1.84e-15 72.0
MS.gene37200.t1 MTR_1g108500 61.404 57 20 1 18 72 113 169 1.87e-15 73.2
MS.gene37200.t1 MTR_4g102530 46.377 69 37 0 1 69 1 69 2.55e-15 70.9
MS.gene37200.t1 MTR_1g101970 46.377 69 37 0 1 69 1 69 3.45e-15 70.1
MS.gene37200.t1 MTR_5g046790 35.577 104 64 2 1 103 1 102 3.84e-15 70.5
MS.gene37200.t1 MTR_3g113030 50.000 62 31 0 1 62 1 62 4.33e-15 70.9
MS.gene37200.t1 MTR_8g097090 34.752 141 55 3 1 104 1 141 5.18e-15 70.9
MS.gene37200.t1 MTR_2g461710 50.877 57 28 0 1 57 1 57 6.96e-15 66.2
MS.gene37200.t1 MTR_5g021270 48.387 62 32 0 1 62 1 62 7.87e-15 70.1
MS.gene37200.t1 MTR_5g021270 48.387 62 32 0 1 62 1 62 7.93e-15 70.1
MS.gene37200.t1 MTR_4g093030 56.140 57 25 0 1 57 1 57 1.18e-14 68.2
MS.gene37200.t1 MTR_5g046870 52.632 57 27 0 1 57 1 57 1.37e-14 67.0
MS.gene37200.t1 MTR_8g066260 33.333 153 78 5 1 144 1 138 1.60e-14 69.3
MS.gene37200.t1 MTR_7g016600 52.632 57 27 0 1 57 1 57 2.13e-14 69.3
MS.gene37200.t1 MTR_1g029670 32.727 110 64 2 1 104 1 106 2.33e-14 67.8
MS.gene37200.t1 MTR_1g038300 57.143 49 21 0 1 49 1 49 2.48e-14 68.9
MS.gene37200.t1 MTR_3g088615 41.538 65 38 0 1 65 1 65 3.68e-14 67.4
MS.gene37200.t1 MTR_3g109930 45.714 70 37 1 1 70 1 69 4.36e-14 67.0
MS.gene37200.t1 MTR_3g084980 54.386 57 26 0 1 57 1 57 4.73e-14 68.2
MS.gene37200.t1 MTR_7g016630 36.667 90 51 2 1 84 1 90 4.85e-14 68.2
MS.gene37200.t1 MTR_4g109830 49.123 57 29 0 1 57 1 57 5.87e-14 67.8
MS.gene37200.t1 MTR_3g067910 47.541 61 32 0 18 78 6 66 7.43e-14 64.7
MS.gene37200.t1 MTR_6g015975 52.632 57 27 0 1 57 1 57 8.01e-14 67.8
MS.gene37200.t1 MTR_6g464720 34.783 138 81 5 1 133 1 134 8.96e-14 67.4
MS.gene37200.t1 MTR_4g084740 55.769 52 23 0 1 52 1 52 1.01e-13 68.2
MS.gene37200.t1 MTR_5g041650 51.852 54 26 0 1 54 38 91 1.34e-13 68.2
MS.gene37200.t1 MTR_3g102570 41.026 78 45 1 1 77 1 78 1.88e-13 67.4
MS.gene37200.t1 MTR_7g075850 57.143 49 21 0 1 49 1 49 1.95e-13 66.6
MS.gene37200.t1 MTR_4g109810 50.877 57 28 0 1 57 1 57 2.06e-13 66.2
MS.gene37200.t1 MTR_1g041615 68.182 44 14 0 15 58 19 62 3.97e-13 63.5
MS.gene37200.t1 MTR_4g036050 47.541 61 32 0 1 61 1 61 8.76e-13 63.9
MS.gene37200.t1 MTR_4g036050 47.541 61 32 0 1 61 1 61 8.76e-13 63.9
MS.gene37200.t1 MTR_4g036050 47.541 61 32 0 1 61 1 61 8.78e-13 63.9
MS.gene37200.t1 MTR_4g036050 47.541 61 32 0 1 61 1 61 8.94e-13 63.5
MS.gene37200.t1 MTR_8g022970 43.478 69 39 0 3 71 19 87 1.55e-12 63.2
MS.gene37200.t1 MTR_4g108720 39.241 79 46 1 1 77 1 79 2.87e-12 63.9
MS.gene37200.t1 MTR_3g437790 36.170 94 58 2 19 111 30 122 2.50e-11 59.7
MS.gene37200.t1 MTR_3g067870 52.083 48 23 0 18 65 92 139 3.72e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37200.t1 AT2G34440 41.758 182 73 5 1 160 1 171 1.07e-34 120
MS.gene37200.t1 AT3G66656 74.242 66 17 0 1 66 1 66 8.13e-32 113
MS.gene37200.t1 AT2G24840 41.935 124 65 2 1 120 62 182 5.67e-28 105
MS.gene37200.t1 AT5G60440 40.764 157 73 4 2 153 7 148 6.83e-26 100
MS.gene37200.t1 AT1G01530 41.727 139 76 3 1 138 6 140 6.00e-24 94.7
MS.gene37200.t1 AT1G65360 38.053 113 69 1 1 112 6 118 9.86e-21 85.9
MS.gene37200.t1 AT1G47760 42.424 99 46 1 1 99 1 88 1.30e-20 84.3
MS.gene37200.t1 AT4G36590 39.062 128 65 3 2 119 7 131 3.83e-20 84.7
MS.gene37200.t1 AT3G57230 33.758 157 92 5 1 157 1 145 1.41e-19 80.9
MS.gene37200.t1 AT5G13790 32.022 178 74 4 1 135 1 174 2.09e-19 83.2
MS.gene37200.t1 AT5G13790 31.492 181 74 4 1 135 1 177 5.78e-19 82.0
MS.gene37200.t1 AT3G57230 32.738 168 101 5 1 168 1 156 5.91e-19 81.3
MS.gene37200.t1 AT3G57230 32.738 168 101 5 1 168 1 156 5.91e-19 81.3
MS.gene37200.t1 AT2G45660 40.187 107 62 2 1 107 1 105 1.03e-18 79.0
MS.gene37200.t1 AT2G22630 58.065 62 26 0 1 62 1 62 2.82e-18 79.3
MS.gene37200.t1 AT2G22630 58.065 62 26 0 1 62 1 62 2.82e-18 79.3
MS.gene37200.t1 AT2G45660 32.886 149 96 3 1 149 1 145 5.93e-18 78.2
MS.gene37200.t1 AT3G61120 54.839 62 28 0 1 62 1 62 5.95e-18 78.6
MS.gene37200.t1 AT4G37940 52.174 69 33 0 1 69 1 69 1.02e-17 77.8
MS.gene37200.t1 AT4G37940 52.174 69 33 0 1 69 1 69 1.43e-17 77.0
MS.gene37200.t1 AT4G37940 52.174 69 33 0 1 69 1 69 1.48e-17 76.3
MS.gene37200.t1 AT4G09960 38.532 109 55 2 1 104 1 102 1.84e-17 77.0
MS.gene37200.t1 AT4G09960 38.532 109 55 2 1 104 2 103 1.91e-17 77.0
MS.gene37200.t1 AT4G09960 38.532 109 55 2 1 104 1 102 1.96e-17 76.6
MS.gene37200.t1 AT5G51860 37.864 103 63 1 1 103 1 102 2.04e-17 76.6
MS.gene37200.t1 AT5G51860 37.864 103 63 1 1 103 1 102 2.19e-17 76.6
MS.gene37200.t1 AT1G72350 53.425 73 32 1 2 74 43 113 2.80e-17 76.6
MS.gene37200.t1 AT4G09960 38.532 109 55 2 1 104 11 112 3.36e-17 76.6
MS.gene37200.t1 AT4G22950 47.826 69 36 0 1 69 1 69 3.72e-17 75.1
MS.gene37200.t1 AT4G09960 38.532 109 55 2 1 104 96 197 3.78e-17 77.8
MS.gene37200.t1 AT3G57390 49.275 69 35 0 1 69 1 69 4.02e-17 76.3
MS.gene37200.t1 AT4G09960 38.532 109 55 2 1 104 27 128 4.46e-17 76.6
MS.gene37200.t1 AT2G22540 39.167 120 58 2 1 120 1 105 5.46e-17 76.3
MS.gene37200.t1 AT2G22540 39.167 120 58 2 1 120 1 105 5.46e-17 76.3
MS.gene37200.t1 AT3G57390 49.275 69 35 0 1 69 1 69 7.16e-17 75.9
MS.gene37200.t1 AT5G62165 33.981 103 66 1 1 103 1 101 1.31e-16 73.2
MS.gene37200.t1 AT5G62165 33.981 103 66 1 1 103 1 101 1.31e-16 73.2
MS.gene37200.t1 AT5G62165 33.981 103 66 1 1 103 1 101 1.31e-16 73.2
MS.gene37200.t1 AT2G45650 47.826 69 36 0 1 69 1 69 1.78e-16 75.1
MS.gene37200.t1 AT2G14210 58.621 58 24 0 1 58 1 58 1.97e-16 74.3
MS.gene37200.t1 AT5G62165 33.981 103 66 1 1 103 1 101 2.46e-16 72.4
MS.gene37200.t1 AT5G62165 33.981 103 66 1 1 103 1 101 2.46e-16 72.4
MS.gene37200.t1 AT5G62165 33.981 103 66 1 1 103 1 101 2.46e-16 72.4
MS.gene37200.t1 AT5G62165 33.981 103 66 1 1 103 1 101 2.46e-16 72.4
MS.gene37200.t1 AT5G62165 33.981 103 66 1 1 103 1 101 2.46e-16 72.4
MS.gene37200.t1 AT2G14210 58.621 58 24 0 1 58 1 58 2.54e-16 74.3
MS.gene37200.t1 AT4G22950 47.826 69 36 0 1 69 1 69 2.87e-16 73.9
MS.gene37200.t1 AT4G22950 47.826 69 36 0 1 69 1 69 2.87e-16 73.9
MS.gene37200.t1 AT3G04100 46.154 65 35 0 2 66 14 78 3.07e-16 73.6
MS.gene37200.t1 AT1G29962 46.377 69 37 0 2 70 8 76 3.35e-16 72.8
MS.gene37200.t1 AT1G28460 46.377 69 37 0 2 70 8 76 3.51e-16 72.8
MS.gene37200.t1 AT3G58780 40.566 106 59 2 1 105 16 118 5.34e-16 73.6
MS.gene37200.t1 AT5G62165 33.981 103 66 1 1 103 1 101 6.53e-16 72.4
MS.gene37200.t1 AT5G62165 33.981 103 66 1 1 103 1 101 6.53e-16 72.4
MS.gene37200.t1 AT3G58780 40.566 106 59 2 1 105 22 124 6.81e-16 73.6
MS.gene37200.t1 AT5G62165 33.981 103 66 1 1 103 1 101 7.14e-16 72.4
MS.gene37200.t1 AT5G62165 33.981 103 66 1 1 103 1 101 7.14e-16 72.4
MS.gene37200.t1 AT5G62165 33.981 103 66 1 1 103 1 101 7.14e-16 72.4
MS.gene37200.t1 AT5G65070 45.205 73 38 1 1 71 1 73 7.50e-16 70.9
MS.gene37200.t1 AT2G42830 41.121 107 57 2 1 105 16 118 7.80e-16 73.2
MS.gene37200.t1 AT2G42830 41.121 107 57 2 1 105 16 118 8.08e-16 73.2
MS.gene37200.t1 AT3G58780 40.566 106 59 2 1 105 16 118 8.87e-16 73.6
MS.gene37200.t1 AT1G77980 46.154 78 41 1 1 77 1 78 9.26e-16 73.9
MS.gene37200.t1 AT4G24540 34.545 110 65 2 1 104 1 109 9.62e-16 72.4
MS.gene37200.t1 AT4G11880 55.172 58 26 0 1 58 1 58 9.86e-16 71.6
MS.gene37200.t1 AT4G11880 55.172 58 26 0 1 58 1 58 9.86e-16 71.6
MS.gene37200.t1 AT5G20240 31.757 148 97 2 1 146 1 146 1.06e-15 70.9
MS.gene37200.t1 AT1G22130 46.250 80 42 1 1 79 1 80 1.11e-15 73.6
MS.gene37200.t1 AT5G10140 54.386 57 26 0 1 57 1 57 1.14e-15 71.2
MS.gene37200.t1 AT5G65070 45.205 73 38 1 1 71 1 73 1.46e-15 71.6
MS.gene37200.t1 AT5G10140 54.386 57 26 0 1 57 1 57 1.62e-15 70.9
MS.gene37200.t1 AT5G10140 53.448 58 27 0 1 58 1 58 1.77e-15 70.9
MS.gene37200.t1 AT5G10140 54.386 57 26 0 1 57 1 57 2.10e-15 70.9
MS.gene37200.t1 AT4G11880 55.172 58 26 0 1 58 1 58 2.93e-15 71.2
MS.gene37200.t1 AT4G11880 55.172 58 26 0 1 58 1 58 2.93e-15 71.2
MS.gene37200.t1 AT5G65070 49.231 65 31 1 1 63 1 65 3.48e-15 71.2
MS.gene37200.t1 AT4G18960 42.157 102 57 1 2 103 18 117 4.10e-15 71.2
MS.gene37200.t1 AT5G20240 46.970 66 35 0 1 66 1 66 4.29e-15 70.5
MS.gene37200.t1 AT5G65070 51.724 58 28 0 1 58 1 58 4.82e-15 70.9
MS.gene37200.t1 AT3G58780 54.237 59 27 0 1 59 16 74 4.94e-15 70.9
MS.gene37200.t1 AT1G77950 43.590 78 43 1 1 77 1 78 5.18e-15 70.9
MS.gene37200.t1 AT1G77950 43.590 78 43 1 1 77 1 78 5.18e-15 70.9
MS.gene37200.t1 AT1G77950 43.590 78 43 1 1 77 1 78 5.18e-15 70.9
MS.gene37200.t1 AT1G77950 43.590 78 43 1 1 77 1 78 5.18e-15 70.9
MS.gene37200.t1 AT2G22540 60.000 50 20 0 1 50 1 50 5.42e-15 70.5
MS.gene37200.t1 AT3G54340 48.387 62 32 0 1 62 1 62 6.06e-15 70.5
MS.gene37200.t1 AT5G65070 51.724 58 28 0 1 58 1 58 6.78e-15 70.1
MS.gene37200.t1 AT3G58780 54.237 59 27 0 1 59 16 74 7.65e-15 70.9
MS.gene37200.t1 AT1G69120 61.224 49 19 0 1 49 1 49 1.12e-14 69.7
MS.gene37200.t1 AT3G30260 52.632 57 27 0 1 57 1 57 1.15e-14 70.1
MS.gene37200.t1 AT1G46408 48.684 76 33 2 1 70 1 76 1.17e-14 70.1
MS.gene37200.t1 AT2G03710 40.230 87 50 1 1 87 1 85 1.38e-14 68.6
MS.gene37200.t1 AT1G69540 44.872 78 42 1 1 77 1 78 1.41e-14 70.9
MS.gene37200.t1 AT1G69540 44.872 78 42 1 1 77 1 78 1.60e-14 70.5
MS.gene37200.t1 AT5G51870 34.951 103 66 1 1 103 1 102 1.62e-14 68.2
MS.gene37200.t1 AT5G51870 32.576 132 84 3 1 131 24 151 1.74e-14 68.6
MS.gene37200.t1 AT5G51870 54.386 57 26 0 1 57 1 57 1.88e-14 68.6
MS.gene37200.t1 AT1G69120 61.224 49 19 0 1 49 1 49 2.24e-14 69.3
MS.gene37200.t1 AT3G02310 34.286 140 56 3 1 104 1 140 2.48e-14 68.2
MS.gene37200.t1 AT1G18750 41.772 79 44 1 1 77 1 79 2.87e-14 70.1
MS.gene37200.t1 AT1G18750 41.772 79 44 1 1 77 1 79 2.91e-14 70.1
MS.gene37200.t1 AT5G51870 34.951 103 66 1 1 103 1 102 2.92e-14 68.6
MS.gene37200.t1 AT1G18750 41.772 79 44 1 1 77 1 79 2.97e-14 70.1
MS.gene37200.t1 AT1G17310 52.055 73 33 1 2 74 48 118 3.55e-14 68.2
MS.gene37200.t1 AT5G60910 50.877 57 28 0 1 57 1 57 4.06e-14 68.6
MS.gene37200.t1 AT5G51870 34.951 103 66 1 1 103 11 112 4.30e-14 68.2
MS.gene37200.t1 AT1G17310 52.055 73 33 1 2 74 59 129 4.60e-14 68.2
MS.gene37200.t1 AT5G62165 37.975 79 49 0 1 79 1 79 4.70e-14 65.5
MS.gene37200.t1 AT5G15800 52.632 57 27 0 1 57 1 57 4.96e-14 68.2
MS.gene37200.t1 AT5G65060 52.727 55 26 0 1 55 1 55 5.84e-14 67.0
MS.gene37200.t1 AT5G15800 52.632 57 27 0 1 57 1 57 7.42e-14 67.8
MS.gene37200.t1 AT1G24260 52.632 57 27 0 1 57 1 57 8.84e-14 67.4
MS.gene37200.t1 AT1G24260 52.632 57 27 0 1 57 1 57 8.92e-14 67.4
MS.gene37200.t1 AT1G24260 52.632 57 27 0 1 57 1 57 9.08e-14 67.4
MS.gene37200.t1 AT5G65060 52.727 55 26 0 1 55 1 55 9.22e-14 66.2
MS.gene37200.t1 AT2G03710 52.632 57 27 0 1 57 1 57 9.25e-14 67.8
MS.gene37200.t1 AT2G03710 52.632 57 27 0 1 57 1 57 9.44e-14 67.8
MS.gene37200.t1 AT5G65050 50.909 55 27 0 1 55 1 55 9.91e-14 66.2
MS.gene37200.t1 AT5G65060 52.727 55 26 0 1 55 1 55 1.01e-13 66.6
MS.gene37200.t1 AT3G02310 52.632 57 27 0 1 57 1 57 1.14e-13 67.4
MS.gene37200.t1 AT1G26310 57.143 49 21 0 1 49 1 49 1.14e-13 67.4
MS.gene37200.t1 AT1G71692 58.000 50 21 0 1 50 1 50 1.18e-13 66.6
MS.gene37200.t1 AT5G23260 59.184 49 20 0 1 49 1 49 1.56e-13 66.6
MS.gene37200.t1 AT5G23260 59.184 49 20 0 1 49 1 49 1.59e-13 67.0
MS.gene37200.t1 AT5G65080 50.909 55 27 0 1 55 8 62 1.81e-13 65.9
MS.gene37200.t1 AT5G23260 59.184 49 20 0 1 49 17 65 1.82e-13 67.0
MS.gene37200.t1 AT5G23260 59.184 49 20 0 1 49 17 65 1.91e-13 67.0
MS.gene37200.t1 AT5G65080 50.909 55 27 0 1 55 8 62 2.27e-13 65.9
MS.gene37200.t1 AT5G65050 50.909 55 27 0 1 55 1 55 2.71e-13 65.1
MS.gene37200.t1 AT5G65050 50.909 55 27 0 1 55 1 55 2.76e-13 65.5
MS.gene37200.t1 AT5G65050 50.909 55 27 0 1 55 1 55 3.04e-13 65.1
MS.gene37200.t1 AT2G03060 43.038 79 43 2 1 77 1 79 9.54e-13 65.5
MS.gene37200.t1 AT2G03060 43.038 79 43 2 1 77 1 79 1.17e-12 65.5
MS.gene37200.t1 AT2G03060 43.038 79 43 2 1 77 1 79 1.17e-12 65.5
MS.gene37200.t1 AT2G03060 43.038 79 43 2 1 77 1 79 1.17e-12 65.5
MS.gene37200.t1 AT4G37435 29.480 173 96 4 1 149 1 171 1.93e-12 62.8
MS.gene37200.t1 AT1G28450 40.580 69 41 0 2 70 8 76 2.48e-12 62.8
MS.gene37200.t1 AT2G26320 43.103 58 33 0 1 58 17 74 4.09e-12 60.5
MS.gene37200.t1 AT5G26650 28.947 152 96 4 4 149 2 147 2.88e-11 61.2
MS.gene37200.t1 AT1G77080 66.667 39 13 0 1 39 1 39 5.48e-11 58.9
MS.gene37200.t1 AT1G77080 66.667 39 13 0 1 39 1 39 6.20e-11 58.2
MS.gene37200.t1 AT1G77080 66.667 39 13 0 1 39 1 39 6.29e-11 58.5
MS.gene37200.t1 AT1G60920 29.801 151 78 5 3 148 5 132 7.01e-11 58.9

Find 28 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGACAATCCTTACTCTTT+TGG 0.280846 1.1:-41141384 MS.gene37200:CDS
TATGTTTAGGCTTTAGTTCA+AGG 0.313600 1.1:+41141328 None:intergenic
CCCGTCTGATTCTTCCAATA+TGG 0.339521 1.1:-41141289 MS.gene37200:CDS
CCTTCAGAGTTCCTATGTTT+AGG 0.343836 1.1:+41141315 None:intergenic
ATGTATGATGCTTCTAGCTC+AGG 0.444160 1.1:-41141076 MS.gene37200:CDS
AGGCTTTAGTTCAAGGTGCT+TGG 0.460931 1.1:+41141335 None:intergenic
GCAGCAACAACATCAACTCC+TGG 0.473203 1.1:+41141357 None:intergenic
GCTATTGTTGTGTTCTCTCC+AGG 0.475407 1.1:-41141405 MS.gene37200:CDS
CACATTCTCAAAGCGTCGGA+TGG 0.502803 1.1:-41141478 MS.gene37200:CDS
CCTGGGTGACCAAAAGAGTA+AGG 0.526567 1.1:+41141375 None:intergenic
TCAAGAACTTGCTGAGCTGT+TGG 0.539928 1.1:-41141256 MS.gene37200:CDS
GAAAGACTCCAACACGAGGC+AGG 0.554822 1.1:-41141502 MS.gene37200:CDS
CCATATTGGAAGAATCAGAC+GGG 0.569719 1.1:+41141289 None:intergenic
TTGAACTAAAGCCTAAACAT+AGG 0.572895 1.1:-41141326 MS.gene37200:CDS
TCCATATTGGAAGAATCAGA+CGG 0.577881 1.1:+41141288 None:intergenic
CCTAAACATAGGAACTCTGA+AGG 0.578874 1.1:-41141315 MS.gene37200:CDS
ACATTCTCAAAGCGTCGGAT+GGG 0.580374 1.1:-41141477 MS.gene37200:CDS
GTCGCAAAATTAAGATTGAG+AGG 0.585479 1.1:-41141527 MS.gene37200:CDS
GCTTCTAGCTCAGGATCCAG+TGG 0.592947 1.1:-41141067 MS.gene37200:CDS
TCTAGCTCAGGATCCAGTGG+TGG 0.596669 1.1:-41141064 MS.gene37200:CDS
CAGCAACAACATCAACTCCT+GGG 0.611229 1.1:+41141358 None:intergenic
GAATGTGACCTGCCTCGTGT+TGG 0.614175 1.1:+41141494 None:intergenic
AGGTCACATTCTCAAAGCGT+CGG 0.615764 1.1:-41141482 MS.gene37200:CDS
CTAGCTCAGGATCCAGTGGT+GGG 0.626580 1.1:-41141063 MS.gene37200:CDS
CTGTTGGCACAAATCCGAGA+AGG 0.647867 1.1:-41141240 MS.gene37200:CDS
AAAGAGTAAGGATTGTCACC+TGG 0.657655 1.1:+41141387 None:intergenic
TCGCAAAATTAAGATTGAGA+GGG 0.676979 1.1:-41141526 MS.gene37200:CDS
GGGTGAAAGACTCCAACACG+AGG 0.715970 1.1:-41141506 MS.gene37200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATTCAATTTTTCCATAT+TGG + chr1.1:41141282-41141301 None:intergenic 20.0%
TCGCAAAATTAAGATTGAGA+GGG - chr1.1:41141028-41141047 MS.gene37200:CDS 30.0%
TTGAACTAAAGCCTAAACAT+AGG - chr1.1:41141228-41141247 MS.gene37200:CDS 30.0%
! GATTCTGAAGAAAAATGATG+TGG - chr1.1:41141364-41141383 MS.gene37200:CDS 30.0%
! TATGTTTAGGCTTTAGTTCA+AGG + chr1.1:41141229-41141248 None:intergenic 30.0%
!!! AATGAATTGTCGATTTTGTG+CGG - chr1.1:41141116-41141135 MS.gene37200:CDS 30.0%
GTCGCAAAATTAAGATTGAG+AGG - chr1.1:41141027-41141046 MS.gene37200:CDS 35.0%
TCCATATTGGAAGAATCAGA+CGG + chr1.1:41141269-41141288 None:intergenic 35.0%
AAAGAGTAAGGATTGTCACC+TGG + chr1.1:41141170-41141189 None:intergenic 40.0%
CCATATTGGAAGAATCAGAC+GGG + chr1.1:41141268-41141287 None:intergenic 40.0%
CCTAAACATAGGAACTCTGA+AGG - chr1.1:41141239-41141258 MS.gene37200:CDS 40.0%
CCTTCAGAGTTCCTATGTTT+AGG + chr1.1:41141242-41141261 None:intergenic 40.0%
! CAGCTTTCTTTTCACCTTCT+CGG + chr1.1:41141331-41141350 None:intergenic 40.0%
! GGTGACAATCCTTACTCTTT+TGG - chr1.1:41141170-41141189 MS.gene37200:CDS 40.0%
!! ATGTATGATGCTTCTAGCTC+AGG - chr1.1:41141478-41141497 MS.gene37200:CDS 40.0%
AGGTCACATTCTCAAAGCGT+CGG - chr1.1:41141072-41141091 MS.gene37200:CDS 45.0%
CAGCAACAACATCAACTCCT+GGG + chr1.1:41141199-41141218 None:intergenic 45.0%
CCCGTCTGATTCTTCCAATA+TGG - chr1.1:41141265-41141284 MS.gene37200:CDS 45.0%
GCTATTGTTGTGTTCTCTCC+AGG - chr1.1:41141149-41141168 MS.gene37200:CDS 45.0%
! AGGCTTTAGTTCAAGGTGCT+TGG + chr1.1:41141222-41141241 None:intergenic 45.0%
!! ACATTCTCAAAGCGTCGGAT+GGG - chr1.1:41141077-41141096 MS.gene37200:CDS 45.0%
!! TCAAGAACTTGCTGAGCTGT+TGG - chr1.1:41141298-41141317 MS.gene37200:CDS 45.0%
CCTGGGTGACCAAAAGAGTA+AGG + chr1.1:41141182-41141201 None:intergenic 50.0%
CTGTTGGCACAAATCCGAGA+AGG - chr1.1:41141314-41141333 MS.gene37200:CDS 50.0%
GCAGCAACAACATCAACTCC+TGG + chr1.1:41141200-41141219 None:intergenic 50.0%
! CCTTACTCTTTTGGTCACCC+AGG - chr1.1:41141179-41141198 MS.gene37200:CDS 50.0%
! GATTTTGTGCGGAGCAGAAG+TGG - chr1.1:41141127-41141146 MS.gene37200:CDS 50.0%
!! CACATTCTCAAAGCGTCGGA+TGG - chr1.1:41141076-41141095 MS.gene37200:CDS 50.0%
!! TTCGCTTTTCTTCCCACCAC+TGG + chr1.1:41141506-41141525 None:intergenic 50.0%
CTAGCTCAGGATCCAGTGGT+GGG - chr1.1:41141491-41141510 MS.gene37200:CDS 55.0%
GAAAGACTCCAACACGAGGC+AGG - chr1.1:41141052-41141071 MS.gene37200:CDS 55.0%
GAATGTGACCTGCCTCGTGT+TGG + chr1.1:41141063-41141082 None:intergenic 55.0%
GGGTGAAAGACTCCAACACG+AGG - chr1.1:41141048-41141067 MS.gene37200:CDS 55.0%
! TCTAGCTCAGGATCCAGTGG+TGG - chr1.1:41141490-41141509 MS.gene37200:CDS 55.0%
!! GCTTCTAGCTCAGGATCCAG+TGG - chr1.1:41141487-41141506 MS.gene37200:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 41141020 41141556 41141020 ID=MS.gene37200
chr1.1 mRNA 41141020 41141556 41141020 ID=MS.gene37200.t1;Parent=MS.gene37200
chr1.1 exon 41141020 41141556 41141020 ID=MS.gene37200.t1.exon1;Parent=MS.gene37200.t1
chr1.1 CDS 41141020 41141556 41141020 ID=cds.MS.gene37200.t1;Parent=MS.gene37200.t1
Gene Sequence

>MS.gene37200

ATGGGTCGTCGCAAAATTAAGATTGAGAGGGTGAAAGACTCCAACACGAGGCAGGTCACATTCTCAAAGCGTCGGATGGGCTTATTCAAAAAAGCAAATGAATTGTCGATTTTGTGCGGAGCAGAAGTGGCTATTGTTGTGTTCTCTCCAGGTGACAATCCTTACTCTTTTGGTCACCCAGGAGTTGATGTTGTTGCTGCCAAGCACCTTGAACTAAAGCCTAAACATAGGAACTCTGAAGGAAACCCGTCTGATTCTTCCAATATGGAAAAATTGAATCAAGAACTTGCTGAGCTGTTGGCACAAATCCGAGAAGGTGAAAAGAAAGCTGAGACTCATGATGAGATTCTGAAGAAAAATGATGTGGCAAAACTCTCAGAGCTTAAAGAATTGAGAGATTCGTACAAAGATCTTCAAGATTGCATAAAATTGCGTCTCAGTGATATTGAGATATCAGAATGTATGATGCTTCTAGCTCAGGATCCAGTGGTGGGAAGAAAAGCGAAAACGTCAAAAAAGAAAAGAAGAAAAAATTGA
Protein sequence

>MS.gene37200.t1

MGRRKIKIERVKDSNTRQVTFSKRRMGLFKKANELSILCGAEVAIVVFSPGDNPYSFGHPGVDVVAAKHLELKPKHRNSEGNPSDSSNMEKLNQELAELLAQIREGEKKAETHDEILKKNDVAKLSELKELRDSYKDLQDCIKLRLSDIEISECMMLLAQDPVVGRKAKTSKKKRRKN