AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37244

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37244.t1 MTR_1g054265 95.266 169 8 0 1 169 1 169 6.57e-117 328
MS.gene37244.t1 MTR_1g063160 79.762 168 34 0 1 168 1 168 1.30e-96 277
MS.gene37244.t1 MTR_1g047550 77.381 168 38 0 1 168 1 168 3.75e-92 266
MS.gene37244.t1 MTR_4g131030 70.430 186 38 1 1 169 1 186 4.60e-89 259
MS.gene37244.t1 MTR_8g079502 76.647 167 39 0 1 167 1 167 2.28e-87 254
MS.gene37244.t1 MTR_8g051580 58.333 168 70 0 1 168 1 168 1.40e-66 201
MS.gene37244.t1 MTR_8g046350 50.595 168 77 3 1 168 1 162 6.71e-51 160
MS.gene37244.t1 MTR_3g080940 42.308 130 73 1 1 128 8 137 3.93e-29 106
MS.gene37244.t1 MTR_4g094632 39.080 174 74 4 1 164 1 152 3.51e-28 102
MS.gene37244.t1 MTR_3g052870 42.143 140 74 3 2 136 9 146 1.00e-26 100
MS.gene37244.t1 MTR_1g106070 45.299 117 54 2 2 112 9 121 1.08e-26 99.8
MS.gene37244.t1 MTR_1g105920 49.515 103 46 2 2 100 9 109 5.11e-26 99.4
MS.gene37244.t1 MTR_3g052920 47.573 103 48 2 2 100 9 109 1.95e-25 97.8
MS.gene37244.t1 MTR_1g105910 48.544 103 47 2 2 100 9 109 6.14e-25 96.7
MS.gene37244.t1 MTR_5g045560 52.500 80 38 0 1 80 8 87 1.24e-24 95.9
MS.gene37244.t1 MTR_1g012570 45.133 113 55 3 2 110 9 118 1.72e-24 95.5
MS.gene37244.t1 MTR_1g108510 44.554 101 54 1 2 100 9 109 2.40e-24 94.7
MS.gene37244.t1 MTR_1g077360 42.982 114 62 2 2 113 9 121 3.80e-24 94.7
MS.gene37244.t1 MTR_3g030770 44.554 101 54 1 2 100 9 109 4.79e-24 94.0
MS.gene37244.t1 MTR_0121s0100 45.631 103 50 2 2 100 9 109 7.89e-24 90.9
MS.gene37244.t1 MTR_2g030740 46.602 103 49 2 2 100 9 109 1.11e-23 93.2
MS.gene37244.t1 MTR_2g093190 44.554 101 54 1 2 100 9 109 1.37e-23 92.8
MS.gene37244.t1 MTR_8g043650 46.602 103 49 2 2 100 9 109 2.96e-23 92.4
MS.gene37244.t1 MTR_4g094638 57.143 70 30 0 1 70 1 70 3.81e-23 90.5
MS.gene37244.t1 MTR_1g108580 43.689 103 52 2 2 100 9 109 9.11e-23 90.9
MS.gene37244.t1 MTR_1g075600 51.899 79 38 0 2 80 9 87 3.19e-22 89.7
MS.gene37244.t1 MTR_2g105290 42.500 120 65 3 1 119 11 127 4.34e-22 87.8
MS.gene37244.t1 MTR_3g030780 41.964 112 59 2 2 109 9 118 4.44e-22 86.7
MS.gene37244.t1 MTR_2g085280 49.367 79 40 0 2 80 9 87 1.06e-21 88.2
MS.gene37244.t1 MTR_2g085250 49.367 79 40 0 2 80 9 87 1.11e-21 88.2
MS.gene37244.t1 MTR_0121s0080 43.636 110 60 1 2 109 9 118 1.51e-21 87.8
MS.gene37244.t1 MTR_5g053390 55.072 69 31 0 2 70 9 77 2.71e-21 87.0
MS.gene37244.t1 MTR_8g086290 47.059 85 43 1 2 84 12 96 3.80e-20 82.8
MS.gene37244.t1 MTR_5g055100 46.835 79 42 0 2 80 9 87 5.02e-20 84.0
MS.gene37244.t1 MTR_1g105905 46.154 104 49 3 13 112 4 104 8.19e-20 82.8
MS.gene37244.t1 MTR_0003s0590 52.113 71 34 0 1 71 1 71 1.91e-19 82.4
MS.gene37244.t1 MTR_7g028448 59.259 54 22 0 17 70 27 80 1.75e-18 78.2
MS.gene37244.t1 MTR_4g036915 59.259 54 22 0 17 70 27 80 1.75e-18 78.2
MS.gene37244.t1 MTR_7g062350 56.716 67 29 0 13 79 32 98 2.37e-18 79.7
MS.gene37244.t1 MTR_3g452380 41.346 104 57 1 1 100 16 119 6.78e-18 78.2
MS.gene37244.t1 MTR_2g009890 53.425 73 34 0 1 73 1 73 7.81e-18 78.6
MS.gene37244.t1 MTR_5g066180 49.275 69 35 0 1 69 1 69 8.05e-18 77.8
MS.gene37244.t1 MTR_5g066960 56.667 60 26 0 1 60 1 60 1.31e-17 72.8
MS.gene37244.t1 MTR_1g053070 49.275 69 35 0 1 69 1 69 3.53e-17 76.3
MS.gene37244.t1 MTR_3g005530 49.296 71 36 0 1 71 1 71 5.54e-17 75.5
MS.gene37244.t1 MTR_8g033270 49.275 69 35 0 1 69 1 69 7.25e-17 75.5
MS.gene37244.t1 MTR_2g017865 50.704 71 35 0 1 71 16 86 8.10e-17 75.5
MS.gene37244.t1 MTR_8g033220 38.462 104 62 1 1 104 1 102 9.57e-17 74.7
MS.gene37244.t1 MTR_3g067875 51.515 66 30 2 13 77 4 68 1.04e-16 70.9
MS.gene37244.t1 MTR_8g033220 38.462 104 62 1 1 104 1 102 1.10e-16 74.7
MS.gene37244.t1 MTR_4g127140 52.113 71 34 0 1 71 11 81 1.92e-16 73.2
MS.gene37244.t1 MTR_7g075870 37.037 108 59 2 1 105 1 102 1.96e-16 73.9
MS.gene37244.t1 MTR_4g102530 47.826 69 36 0 1 69 1 69 3.06e-16 73.2
MS.gene37244.t1 MTR_8g087860 49.296 71 36 0 1 71 17 87 3.76e-16 73.6
MS.gene37244.t1 MTR_5g031000 49.275 69 35 0 1 69 1 69 4.49e-16 73.2
MS.gene37244.t1 MTR_5g031000 49.275 69 35 0 1 69 1 69 4.97e-16 72.8
MS.gene37244.t1 MTR_1g101970 47.826 69 36 0 1 69 1 69 5.69e-16 72.0
MS.gene37244.t1 MTR_7g075870 55.172 58 26 0 1 58 1 58 9.04e-16 72.0
MS.gene37244.t1 MTR_5g021270 48.438 64 33 0 1 64 1 64 1.84e-15 71.6
MS.gene37244.t1 MTR_5g021270 48.438 64 33 0 1 64 1 64 1.91e-15 71.6
MS.gene37244.t1 MTR_3g113030 48.438 64 33 0 1 64 1 64 2.65e-15 70.9
MS.gene37244.t1 MTR_5g032150 37.374 99 53 2 1 99 1 90 2.70e-15 70.9
MS.gene37244.t1 MTR_5g032520 37.374 99 53 2 1 99 1 90 2.74e-15 70.9
MS.gene37244.t1 MTR_2g461710 50.877 57 28 0 1 57 1 57 3.35e-15 66.6
MS.gene37244.t1 MTR_4g093970 47.692 65 34 0 1 65 27 91 3.67e-15 70.9
MS.gene37244.t1 MTR_5g046790 50.000 58 29 0 1 58 1 58 4.16e-15 70.1
MS.gene37244.t1 MTR_1g108500 64.583 48 17 0 18 65 113 160 4.29e-15 71.6
MS.gene37244.t1 MTR_1g029670 37.975 79 47 1 1 77 1 79 4.88e-15 69.3
MS.gene37244.t1 MTR_1g038300 41.772 79 44 1 1 77 1 79 6.00e-15 70.1
MS.gene37244.t1 MTR_6g464720 38.614 101 56 3 1 97 1 99 7.51e-15 70.1
MS.gene37244.t1 MTR_4g109830 42.857 70 39 1 1 69 1 70 9.06e-15 69.7
MS.gene37244.t1 MTR_4g084740 46.575 73 38 1 1 72 1 73 1.05e-14 70.5
MS.gene37244.t1 MTR_4g093030 55.172 58 26 0 1 58 1 58 1.10e-14 68.2
MS.gene37244.t1 MTR_5g046870 52.632 57 27 0 1 57 1 57 1.11e-14 67.0
MS.gene37244.t1 MTR_3g067910 49.206 63 32 0 18 80 6 68 1.47e-14 66.2
MS.gene37244.t1 MTR_7g016630 30.345 145 90 3 1 144 1 135 1.49e-14 69.3
MS.gene37244.t1 MTR_7g016600 52.632 57 27 0 1 57 1 57 2.19e-14 68.9
MS.gene37244.t1 MTR_8g066260 50.000 58 29 0 1 58 1 58 2.46e-14 68.6
MS.gene37244.t1 MTR_3g088615 41.538 65 38 0 1 65 1 65 2.47e-14 67.4
MS.gene37244.t1 MTR_4g036050 45.205 73 39 1 1 72 1 73 3.10e-14 67.4
MS.gene37244.t1 MTR_4g036050 45.205 73 39 1 1 72 1 73 3.22e-14 67.0
MS.gene37244.t1 MTR_4g036050 45.205 73 39 1 1 72 1 73 3.65e-14 67.4
MS.gene37244.t1 MTR_3g102570 43.836 73 40 1 1 72 1 73 3.71e-14 68.9
MS.gene37244.t1 MTR_4g109810 34.848 132 69 5 1 116 1 131 3.75e-14 68.2
MS.gene37244.t1 MTR_4g036050 45.205 73 39 1 1 72 1 73 4.19e-14 67.0
MS.gene37244.t1 MTR_3g084980 54.386 57 26 0 1 57 1 57 4.30e-14 68.2
MS.gene37244.t1 MTR_8g097090 52.632 57 27 0 1 57 1 57 5.94e-14 67.8
MS.gene37244.t1 MTR_3g109930 42.857 70 40 0 1 70 1 70 6.62e-14 66.2
MS.gene37244.t1 MTR_6g015975 52.632 57 27 0 1 57 1 57 7.15e-14 67.4
MS.gene37244.t1 MTR_5g041650 51.852 54 26 0 1 54 38 91 7.77e-14 68.6
MS.gene37244.t1 MTR_1g041615 68.182 44 14 0 15 58 19 62 2.34e-13 63.9
MS.gene37244.t1 MTR_7g075850 57.143 49 21 0 1 49 1 49 2.54e-13 65.9
MS.gene37244.t1 MTR_4g108720 38.961 77 45 1 1 75 1 77 1.29e-12 64.7
MS.gene37244.t1 MTR_8g022970 44.118 68 38 0 3 70 19 86 3.18e-12 62.0
MS.gene37244.t1 MTR_3g067870 49.123 57 28 1 13 69 88 143 9.13e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37244.t1 AT2G34440 43.103 174 83 4 1 161 1 171 2.01e-34 119
MS.gene37244.t1 AT3G66656 71.014 69 20 0 1 69 1 69 1.96e-31 112
MS.gene37244.t1 AT2G24840 44.800 125 61 4 1 121 62 182 2.04e-27 103
MS.gene37244.t1 AT5G60440 43.885 139 53 3 2 127 7 133 2.07e-25 99.4
MS.gene37244.t1 AT1G01530 41.007 139 78 2 1 139 6 140 9.33e-22 88.6
MS.gene37244.t1 AT1G65360 40.351 114 66 2 1 113 6 118 3.13e-21 86.7
MS.gene37244.t1 AT1G47760 56.061 66 28 1 1 65 1 66 1.39e-19 81.6
MS.gene37244.t1 AT5G13790 52.174 69 33 0 1 69 1 69 2.33e-19 82.8
MS.gene37244.t1 AT5G13790 52.174 69 33 0 1 69 1 69 2.42e-19 82.4
MS.gene37244.t1 AT4G36590 34.302 172 85 5 2 162 7 161 2.49e-19 82.0
MS.gene37244.t1 AT4G22950 42.391 92 49 1 1 92 1 88 3.15e-19 80.1
MS.gene37244.t1 AT2G45660 30.000 150 100 2 1 150 1 145 5.03e-19 79.3
MS.gene37244.t1 AT3G57230 52.174 69 33 0 1 69 1 69 5.92e-19 79.0
MS.gene37244.t1 AT4G37940 53.425 73 34 0 1 73 1 73 7.53e-19 80.5
MS.gene37244.t1 AT3G61120 47.297 74 39 0 1 74 1 74 7.99e-19 80.9
MS.gene37244.t1 AT4G37940 53.425 73 34 0 1 73 1 73 9.78e-19 80.1
MS.gene37244.t1 AT4G37940 53.425 73 34 0 1 73 1 73 1.34e-18 78.6
MS.gene37244.t1 AT3G57230 52.174 69 33 0 1 69 1 69 2.26e-18 79.3
MS.gene37244.t1 AT3G57230 52.174 69 33 0 1 69 1 69 2.26e-18 79.3
MS.gene37244.t1 AT2G45660 30.000 150 100 2 1 150 1 145 2.29e-18 79.0
MS.gene37244.t1 AT4G22950 45.783 83 41 1 1 83 1 79 3.26e-18 78.6
MS.gene37244.t1 AT4G22950 45.783 83 41 1 1 83 1 79 3.26e-18 78.6
MS.gene37244.t1 AT1G72350 51.282 78 36 1 2 79 43 118 4.25e-18 78.6
MS.gene37244.t1 AT3G57390 50.725 69 34 0 1 69 1 69 7.70e-18 77.8
MS.gene37244.t1 AT4G09960 50.704 71 35 0 1 71 1 71 1.45e-17 77.0
MS.gene37244.t1 AT4G09960 50.704 71 35 0 1 71 2 72 1.49e-17 77.0
MS.gene37244.t1 AT4G09960 50.704 71 35 0 1 71 1 71 1.50e-17 77.0
MS.gene37244.t1 AT3G57390 50.725 69 34 0 1 69 1 69 1.53e-17 77.4
MS.gene37244.t1 AT2G22630 43.000 100 54 1 1 97 1 100 1.72e-17 77.0
MS.gene37244.t1 AT2G22630 43.000 100 54 1 1 97 1 100 1.72e-17 77.0
MS.gene37244.t1 AT4G09960 50.704 71 35 0 1 71 11 81 2.01e-17 77.0
MS.gene37244.t1 AT4G09960 50.704 71 35 0 1 71 27 97 2.84e-17 77.0
MS.gene37244.t1 AT4G09960 50.704 71 35 0 1 71 96 166 3.07e-17 77.8
MS.gene37244.t1 AT2G45650 49.275 69 35 0 1 69 1 69 3.23e-17 76.6
MS.gene37244.t1 AT2G14210 43.529 85 47 1 1 84 1 85 4.20e-17 75.9
MS.gene37244.t1 AT2G14210 43.529 85 47 1 1 84 1 85 4.83e-17 75.9
MS.gene37244.t1 AT2G22540 41.414 99 49 3 1 99 1 90 6.03e-17 75.9
MS.gene37244.t1 AT2G22540 41.414 99 49 3 1 99 1 90 6.03e-17 75.9
MS.gene37244.t1 AT1G29962 46.377 69 37 0 2 70 8 76 9.95e-17 73.9
MS.gene37244.t1 AT3G04100 47.692 65 34 0 2 66 14 78 1.07e-16 74.3
MS.gene37244.t1 AT5G20240 44.304 79 42 1 1 77 1 79 1.28e-16 72.8
MS.gene37244.t1 AT1G28460 46.377 69 37 0 2 70 8 76 1.41e-16 73.6
MS.gene37244.t1 AT4G24540 44.928 69 38 0 1 69 1 69 2.18e-16 73.9
MS.gene37244.t1 AT3G54340 40.909 88 37 1 1 73 1 88 2.95e-16 73.6
MS.gene37244.t1 AT5G20240 44.304 79 42 1 1 77 1 79 3.55e-16 73.2
MS.gene37244.t1 AT2G42830 49.296 71 36 0 1 71 16 86 5.51e-16 73.2
MS.gene37244.t1 AT2G42830 49.296 71 36 0 1 71 16 86 5.90e-16 73.2
MS.gene37244.t1 AT5G10140 54.386 57 26 0 1 57 1 57 6.27e-16 71.6
MS.gene37244.t1 AT5G65070 51.724 58 28 0 1 58 1 58 6.35e-16 70.9
MS.gene37244.t1 AT3G58780 49.296 71 36 0 1 71 16 86 7.03e-16 72.8
MS.gene37244.t1 AT5G51860 46.575 73 39 0 1 73 1 73 7.46e-16 72.0
MS.gene37244.t1 AT5G51860 46.575 73 39 0 1 73 1 73 7.52e-16 72.4
MS.gene37244.t1 AT5G51870 45.833 72 39 0 1 72 1 72 8.66e-16 71.2
MS.gene37244.t1 AT3G58780 49.296 71 36 0 1 71 22 92 8.78e-16 72.8
MS.gene37244.t1 AT5G51870 45.833 72 39 0 1 72 1 72 9.32e-16 72.0
MS.gene37244.t1 AT5G10140 53.448 58 27 0 1 58 1 58 9.52e-16 71.6
MS.gene37244.t1 AT5G10140 54.386 57 26 0 1 57 1 57 1.02e-15 71.2
MS.gene37244.t1 AT3G58780 49.296 71 36 0 1 71 16 86 1.14e-15 72.8
MS.gene37244.t1 AT1G46408 48.684 76 33 2 1 70 1 76 1.16e-15 72.8
MS.gene37244.t1 AT5G10140 53.448 58 27 0 1 58 1 58 1.17e-15 71.2
MS.gene37244.t1 AT4G11880 55.172 58 26 0 1 58 1 58 1.23e-15 70.9
MS.gene37244.t1 AT4G11880 55.172 58 26 0 1 58 1 58 1.23e-15 70.9
MS.gene37244.t1 AT3G30260 54.386 57 26 0 1 57 1 57 1.40e-15 72.0
MS.gene37244.t1 AT5G51870 45.833 72 39 0 1 72 24 95 1.44e-15 71.2
MS.gene37244.t1 AT5G65070 51.724 58 28 0 1 58 1 58 1.47e-15 71.2
MS.gene37244.t1 AT5G51870 45.833 72 39 0 1 72 1 72 1.55e-15 71.6
MS.gene37244.t1 AT1G77980 47.945 73 37 1 1 72 1 73 1.75e-15 72.8
MS.gene37244.t1 AT4G18960 50.000 70 35 0 2 71 18 87 2.00e-15 71.6
MS.gene37244.t1 AT5G51870 45.833 72 39 0 1 72 11 82 2.04e-15 71.2
MS.gene37244.t1 AT5G65070 49.231 65 31 1 1 63 1 65 2.46e-15 71.2
MS.gene37244.t1 AT1G71692 47.222 72 37 1 1 71 1 72 2.91e-15 70.9
MS.gene37244.t1 AT4G11880 55.172 58 26 0 1 58 1 58 3.07e-15 70.9
MS.gene37244.t1 AT4G11880 55.172 58 26 0 1 58 1 58 3.07e-15 70.9
MS.gene37244.t1 AT1G22130 46.753 77 39 2 1 76 1 76 3.33e-15 72.0
MS.gene37244.t1 AT5G65070 51.724 58 28 0 1 58 1 58 3.86e-15 70.9
MS.gene37244.t1 AT2G22540 60.000 50 20 0 1 50 1 50 4.04e-15 70.9
MS.gene37244.t1 AT5G65070 51.724 58 28 0 1 58 1 58 4.76e-15 70.1
MS.gene37244.t1 AT4G37435 29.050 179 90 4 1 150 1 171 6.15e-15 69.3
MS.gene37244.t1 AT3G58780 54.237 59 27 0 1 59 16 74 6.21e-15 70.5
MS.gene37244.t1 AT1G17310 49.296 71 33 2 17 86 63 131 7.56e-15 69.7
MS.gene37244.t1 AT3G58780 54.237 59 27 0 1 59 16 74 8.21e-15 70.5
MS.gene37244.t1 AT5G62165 42.254 71 41 0 1 71 1 71 8.25e-15 68.2
MS.gene37244.t1 AT5G62165 42.254 71 41 0 1 71 1 71 8.25e-15 68.2
MS.gene37244.t1 AT5G62165 42.254 71 41 0 1 71 1 71 8.25e-15 68.2
MS.gene37244.t1 AT1G17310 56.897 58 23 1 17 74 74 129 9.95e-15 69.7
MS.gene37244.t1 AT1G18750 41.558 77 43 1 1 75 1 77 1.08e-14 70.9
MS.gene37244.t1 AT1G18750 41.558 77 43 1 1 75 1 77 1.11e-14 70.9
MS.gene37244.t1 AT1G18750 41.558 77 43 1 1 75 1 77 1.13e-14 70.9
MS.gene37244.t1 AT5G62165 42.254 71 41 0 1 71 1 71 1.23e-14 67.8
MS.gene37244.t1 AT5G62165 42.254 71 41 0 1 71 1 71 1.23e-14 67.8
MS.gene37244.t1 AT5G62165 42.254 71 41 0 1 71 1 71 1.23e-14 67.8
MS.gene37244.t1 AT5G62165 42.254 71 41 0 1 71 1 71 1.23e-14 67.8
MS.gene37244.t1 AT5G62165 42.254 71 41 0 1 71 1 71 1.23e-14 67.8
MS.gene37244.t1 AT1G77950 43.902 82 44 2 1 80 1 82 1.33e-14 69.7
MS.gene37244.t1 AT1G77950 43.902 82 44 2 1 80 1 82 1.33e-14 69.7
MS.gene37244.t1 AT1G77950 43.902 82 44 2 1 80 1 82 1.33e-14 69.7
MS.gene37244.t1 AT1G77950 43.902 82 44 2 1 80 1 82 1.33e-14 69.7
MS.gene37244.t1 AT1G69120 51.724 58 28 0 1 58 1 58 1.63e-14 68.9
MS.gene37244.t1 AT1G69540 44.737 76 41 1 1 75 1 76 1.77e-14 70.1
MS.gene37244.t1 AT1G69540 44.737 76 41 1 1 75 1 76 1.90e-14 70.1
MS.gene37244.t1 AT5G62165 42.254 71 41 0 1 71 1 71 2.10e-14 68.6
MS.gene37244.t1 AT5G62165 42.254 71 41 0 1 71 1 71 2.10e-14 68.6
MS.gene37244.t1 AT5G62165 42.254 71 41 0 1 71 1 71 2.10e-14 68.6
MS.gene37244.t1 AT5G62165 42.254 71 41 0 1 71 1 71 2.12e-14 68.2
MS.gene37244.t1 AT5G62165 42.254 71 41 0 1 71 1 71 2.12e-14 68.2
MS.gene37244.t1 AT2G03710 52.632 57 27 0 1 57 1 57 2.17e-14 67.8
MS.gene37244.t1 AT5G60910 50.877 57 28 0 1 57 1 57 2.17e-14 68.9
MS.gene37244.t1 AT5G62165 42.254 71 41 0 1 71 1 71 2.18e-14 65.9
MS.gene37244.t1 AT5G23260 61.224 49 19 0 1 49 1 49 3.05e-14 68.6
MS.gene37244.t1 AT1G69120 51.724 58 28 0 1 58 1 58 3.24e-14 68.6
MS.gene37244.t1 AT5G23260 61.224 49 19 0 1 49 1 49 3.36e-14 68.6
MS.gene37244.t1 AT1G26310 50.000 58 29 0 1 58 1 58 3.85e-14 68.2
MS.gene37244.t1 AT5G23260 61.224 49 19 0 1 49 17 65 4.07e-14 68.6
MS.gene37244.t1 AT5G23260 61.224 49 19 0 1 49 17 65 4.28e-14 68.6
MS.gene37244.t1 AT5G15800 52.632 57 27 0 1 57 1 57 4.79e-14 68.2
MS.gene37244.t1 AT5G65060 52.727 55 26 0 1 55 1 55 5.19e-14 67.0
MS.gene37244.t1 AT3G02310 52.632 57 27 0 1 57 1 57 6.68e-14 67.0
MS.gene37244.t1 AT5G15800 52.632 57 27 0 1 57 1 57 7.02e-14 67.8
MS.gene37244.t1 AT1G24260 52.632 57 27 0 1 57 1 57 7.18e-14 67.4
MS.gene37244.t1 AT1G24260 52.632 57 27 0 1 57 1 57 7.80e-14 67.4
MS.gene37244.t1 AT5G65060 52.727 55 26 0 1 55 1 55 7.96e-14 66.2
MS.gene37244.t1 AT1G24260 52.632 57 27 0 1 57 1 57 8.13e-14 67.4
MS.gene37244.t1 AT5G65060 52.727 55 26 0 1 55 1 55 8.81e-14 66.6
MS.gene37244.t1 AT2G03710 52.632 57 27 0 1 57 1 57 9.04e-14 67.4
MS.gene37244.t1 AT2G03710 52.632 57 27 0 1 57 1 57 9.32e-14 67.4
MS.gene37244.t1 AT5G65050 50.909 55 27 0 1 55 1 55 9.41e-14 65.9
MS.gene37244.t1 AT3G02310 52.632 57 27 0 1 57 1 57 9.66e-14 67.0
MS.gene37244.t1 AT5G65080 50.909 55 27 0 1 55 8 62 1.47e-13 65.9
MS.gene37244.t1 AT5G65080 44.928 69 37 1 1 69 8 75 1.75e-13 65.9
MS.gene37244.t1 AT5G65050 50.909 55 27 0 1 55 1 55 2.18e-13 65.1
MS.gene37244.t1 AT5G65050 50.909 55 27 0 1 55 1 55 2.43e-13 65.1
MS.gene37244.t1 AT5G65050 50.909 55 27 0 1 55 1 55 2.53e-13 65.1
MS.gene37244.t1 AT2G03060 42.857 77 42 2 1 75 1 77 5.26e-13 66.2
MS.gene37244.t1 AT2G03060 42.857 77 42 2 1 75 1 77 5.90e-13 65.9
MS.gene37244.t1 AT2G03060 42.857 77 42 2 1 75 1 77 5.90e-13 65.9
MS.gene37244.t1 AT2G03060 42.857 77 42 2 1 75 1 77 5.90e-13 65.9
MS.gene37244.t1 AT1G28450 30.061 163 94 4 2 146 8 168 1.15e-12 63.2
MS.gene37244.t1 AT1G60920 42.466 73 37 2 3 70 5 77 2.33e-12 62.4
MS.gene37244.t1 AT5G49490 43.056 72 37 1 3 70 46 117 2.41e-12 63.5
MS.gene37244.t1 AT2G26320 43.103 58 33 0 1 58 17 74 5.06e-12 59.7
MS.gene37244.t1 AT1G77080 66.667 39 13 0 1 39 1 39 4.37e-11 58.9
MS.gene37244.t1 AT3G05860 47.273 55 28 1 1 54 1 55 4.53e-11 59.7
MS.gene37244.t1 AT3G05860 47.273 55 28 1 1 54 1 55 5.13e-11 59.3
MS.gene37244.t1 AT3G05860 47.273 55 28 1 1 54 1 55 5.51e-11 59.7
MS.gene37244.t1 AT1G77080 66.667 39 13 0 1 39 1 39 5.67e-11 58.5
MS.gene37244.t1 AT1G77080 66.667 39 13 0 1 39 1 39 5.79e-11 57.8
MS.gene37244.t1 AT1G77080 66.667 39 13 0 1 39 1 39 9.09e-11 58.2

Find 28 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAACAATCCTTATTCTTT+TGG 0.231068 1.2:-40543069 MS.gene37244:CDS
GCTATTGTTGTGTTCTCTCC+TGG 0.333083 1.2:-40543090 MS.gene37244:CDS
CCTGGGTGACCAAAAGAATA+AGG 0.337629 1.2:+40543060 None:intergenic
AACTTCAGCTCCGCACAAAA+TGG 0.384079 1.2:+40543113 None:intergenic
CTATTGTTGTGTTCTCTCCT+GGG 0.390579 1.2:-40543089 MS.gene37244:CDS
CCTATGGAATTCATGCGTTT+AGG 0.407607 1.2:+40543000 None:intergenic
CTAGAACTTGTTGAGGTGTT+GGG 0.408328 1.2:-40542937 MS.gene37244:CDS
ATGTTTGATTCTTCTAGCTC+AGG 0.408765 1.2:-40542758 MS.gene37244:CDS
AGGCTTTAGTTTCAAATACT+TGG 0.421254 1.2:+40543020 None:intergenic
ACTTTCTCAAAGCGTCGAAC+GGG 0.442601 1.2:-40543162 MS.gene37244:CDS
GCAGCAACAACATCAACTCC+TGG 0.473203 1.2:+40543042 None:intergenic
CACTTTCTCAAAGCGTCGAA+CGG 0.490261 1.2:-40543163 MS.gene37244:CDS
ATCAAAAGAGGAGTTTCCTA+TGG 0.504141 1.2:+40542984 None:intergenic
CTCTCAATTCTTTAAGCTCG+AGG 0.514790 1.2:+40542842 None:intergenic
CTAGCTCAGGATCCAGTTGT+GGG 0.528788 1.2:-40542745 MS.gene37244:CDS
TCTAGCTCAGGATCCAGTTG+TGG 0.537185 1.2:-40542746 MS.gene37244:CDS
GAAAGACTCCAACATGAGGC+AGG 0.540964 1.2:-40543187 MS.gene37244:CDS
TCTAGAACTTGTTGAGGTGT+TGG 0.548141 1.2:-40542938 MS.gene37244:CDS
CATATTCGGAGAATCAAAAG+AGG 0.557761 1.2:+40542972 None:intergenic
CCTAAACGCATGAATTCCAT+AGG 0.557834 1.2:-40543000 MS.gene37244:CDS
GTCGCAAAATTAAAATAGAG+AGG 0.572448 1.2:-40543212 MS.gene37244:CDS
ATTGAATCTAGAACTTGTTG+AGG 0.572715 1.2:-40542944 MS.gene37244:CDS
AAAGAATAAGGATTGTTCCC+AGG 0.586421 1.2:+40543072 None:intergenic
CAGCAACAACATCAACTCCT+GGG 0.611229 1.2:+40543043 None:intergenic
TCGCAAAATTAAAATAGAGA+GGG 0.620927 1.2:-40543211 MS.gene37244:CDS
GAAAGTGACCTGCCTCATGT+TGG 0.647978 1.2:+40543179 None:intergenic
GTGTTGGGACAAGTTCAAGA+AGG 0.657260 1.2:-40542922 MS.gene37244:CDS
GGGTGAAAGACTCCAACATG+AGG 0.676362 1.2:-40543191 MS.gene37244:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATTCAATTTTTCCATATT+CGG + chr1.2:40542996-40543015 None:intergenic 20.0%
! TCGCAAAATTAAAATAGAGA+GGG - chr1.2:40542740-40542759 MS.gene37244:CDS 25.0%
GTCGCAAAATTAAAATAGAG+AGG - chr1.2:40542739-40542758 MS.gene37244:CDS 30.0%
! AATGAATTGTCCATTTTGTG+CGG - chr1.2:40542828-40542847 MS.gene37244:CDS 30.0%
! AGGCTTTAGTTTCAAATACT+TGG + chr1.2:40542934-40542953 None:intergenic 30.0%
!! ATTGAATCTAGAACTTGTTG+AGG - chr1.2:40543007-40543026 MS.gene37244:CDS 30.0%
!! TTTGTCACATTGTTTTGCTT+CGG + chr1.2:40543086-40543105 None:intergenic 30.0%
AAAGAATAAGGATTGTTCCC+AGG + chr1.2:40542882-40542901 None:intergenic 35.0%
ATCAAAAGAGGAGTTTCCTA+TGG + chr1.2:40542970-40542989 None:intergenic 35.0%
CATATTCGGAGAATCAAAAG+AGG + chr1.2:40542982-40543001 None:intergenic 35.0%
! GGGAACAATCCTTATTCTTT+TGG - chr1.2:40542882-40542901 MS.gene37244:CDS 35.0%
! TACTCTTTTATTCCCACAAC+TGG + chr1.2:40543221-40543240 None:intergenic 35.0%
!! ATGTTTGATTCTTCTAGCTC+AGG - chr1.2:40543193-40543212 MS.gene37244:CDS 35.0%
!! CTCTTTTGATTCTCCGAATA+TGG - chr1.2:40542980-40542999 MS.gene37244:CDS 35.0%
CCTAAACGCATGAATTCCAT+AGG - chr1.2:40542951-40542970 MS.gene37244:CDS 40.0%
CCTATGGAATTCATGCGTTT+AGG + chr1.2:40542954-40542973 None:intergenic 40.0%
CTATTGTTGTGTTCTCTCCT+GGG - chr1.2:40542862-40542881 MS.gene37244:CDS 40.0%
CTCTCAATTCTTTAAGCTCG+AGG + chr1.2:40543112-40543131 None:intergenic 40.0%
!! CTAGAACTTGTTGAGGTGTT+GGG - chr1.2:40543014-40543033 MS.gene37244:CDS 40.0%
!! TCTAGAACTTGTTGAGGTGT+TGG - chr1.2:40543013-40543032 MS.gene37244:CDS 40.0%
AACTTCAGCTCCGCACAAAA+TGG + chr1.2:40542841-40542860 None:intergenic 45.0%
CAGCAACAACATCAACTCCT+GGG + chr1.2:40542911-40542930 None:intergenic 45.0%
CCTGGGTGACCAAAAGAATA+AGG + chr1.2:40542894-40542913 None:intergenic 45.0%
GCTATTGTTGTGTTCTCTCC+TGG - chr1.2:40542861-40542880 MS.gene37244:CDS 45.0%
GTGTTGGGACAAGTTCAAGA+AGG - chr1.2:40543029-40543048 MS.gene37244:CDS 45.0%
! CCTTATTCTTTTGGTCACCC+AGG - chr1.2:40542891-40542910 MS.gene37244:CDS 45.0%
!! ACTTTCTCAAAGCGTCGAAC+GGG - chr1.2:40542789-40542808 MS.gene37244:CDS 45.0%
!! CACTTTCTCAAAGCGTCGAA+CGG - chr1.2:40542788-40542807 MS.gene37244:CDS 45.0%
CTAGCTCAGGATCCAGTTGT+GGG - chr1.2:40543206-40543225 MS.gene37244:CDS 50.0%
GAAAGACTCCAACATGAGGC+AGG - chr1.2:40542764-40542783 MS.gene37244:CDS 50.0%
GAAAGTGACCTGCCTCATGT+TGG + chr1.2:40542775-40542794 None:intergenic 50.0%
GCAGCAACAACATCAACTCC+TGG + chr1.2:40542912-40542931 None:intergenic 50.0%
GGGTGAAAGACTCCAACATG+AGG - chr1.2:40542760-40542779 MS.gene37244:CDS 50.0%
! TCTAGCTCAGGATCCAGTTG+TGG - chr1.2:40543205-40543224 MS.gene37244:CDS 50.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 40542732 40543241 40542732 ID=MS.gene37244
chr1.2 mRNA 40542732 40543241 40542732 ID=MS.gene37244.t1;Parent=MS.gene37244
chr1.2 exon 40542732 40543241 40542732 ID=MS.gene37244.t1.exon1;Parent=MS.gene37244.t1
chr1.2 CDS 40542732 40543241 40542732 ID=cds.MS.gene37244.t1;Parent=MS.gene37244.t1
Gene Sequence

>MS.gene37244

ATGGGTCGTCGCAAAATTAAAATAGAGAGGGTGAAAGACTCCAACATGAGGCAGGTCACTTTCTCAAAGCGTCGAACGGGCTTATTCAAGAAAGCAAATGAATTGTCCATTTTGTGCGGAGCTGAAGTTGCTATTGTTGTGTTCTCTCCTGGGAACAATCCTTATTCTTTTGGTCACCCAGGAGTTGATGTTGTTGCTGCCAAGTATTTGAAACTAAAGCCTAAACGCATGAATTCCATAGGAAACTCCTCTTTTGATTCTCCGAATATGGAAAAATTGAATCTAGAACTTGTTGAGGTGTTGGGACAAGTTCAAGAAGGTGAAAAGCAAGCTGAGAATCATGATGAGATTCCGAAGCAAAACAATGTGACAAAACTCCTCGAGCTTAAAGAATTGAGAGATTCATATCAAGAGCTTCAAGATTGCATAAAATTGCGTCTTAGTGATATCGAGATATCAGAATGTTTGATTCTTCTAGCTCAGGATCCAGTTGTGGGAATAAAAGAGTAA
Protein sequence

>MS.gene37244.t1

MGRRKIKIERVKDSNMRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNNPYSFGHPGVDVVAAKYLKLKPKRMNSIGNSSFDSPNMEKLNLELVEVLGQVQEGEKQAENHDEIPKQNNVTKLLELKELRDSYQELQDCIKLRLSDIEISECLILLAQDPVVGIKE