AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37249

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37249.t1 MTR_1g054265 96.774 124 4 0 1 124 1 124 4.49e-86 248
MS.gene37249.t1 MTR_1g063160 79.032 124 26 0 1 124 1 124 1.55e-69 206
MS.gene37249.t1 MTR_1g047550 77.419 124 28 0 1 124 1 124 2.27e-67 201
MS.gene37249.t1 MTR_8g079502 76.613 124 29 0 1 124 1 124 3.67e-64 193
MS.gene37249.t1 MTR_4g131030 68.571 140 27 1 1 123 1 140 8.28e-64 193
MS.gene37249.t1 MTR_8g051580 62.097 124 47 0 1 124 1 124 3.93e-50 157
MS.gene37249.t1 MTR_8g046350 52.500 120 54 1 1 120 1 117 3.19e-38 127
MS.gene37249.t1 MTR_3g080940 44.628 121 65 1 1 119 8 128 5.54e-30 107
MS.gene37249.t1 MTR_3g052870 46.018 113 59 1 2 112 9 121 2.17e-27 100
MS.gene37249.t1 MTR_1g106070 43.548 124 60 2 2 119 9 128 2.73e-27 99.8
MS.gene37249.t1 MTR_1g105920 46.018 113 59 1 2 112 9 121 3.12e-27 100
MS.gene37249.t1 MTR_1g105910 45.133 113 60 1 2 112 9 121 1.94e-26 99.0
MS.gene37249.t1 MTR_3g052920 44.248 113 61 2 2 112 9 121 2.54e-26 98.6
MS.gene37249.t1 MTR_5g045560 52.500 80 38 0 1 80 8 87 4.92e-26 97.8
MS.gene37249.t1 MTR_1g012570 44.144 111 59 2 2 110 9 118 5.65e-26 97.8
MS.gene37249.t1 MTR_1g077360 42.982 114 62 2 2 113 9 121 1.18e-25 96.7
MS.gene37249.t1 MTR_4g094632 45.872 109 59 0 1 109 1 109 1.28e-25 94.7
MS.gene37249.t1 MTR_1g108510 44.554 101 54 1 2 100 9 109 1.67e-25 96.3
MS.gene37249.t1 MTR_0121s0100 44.554 101 54 1 2 100 9 109 2.48e-25 93.2
MS.gene37249.t1 MTR_3g030770 44.554 101 54 1 2 100 9 109 3.65e-25 95.5
MS.gene37249.t1 MTR_2g030740 43.363 113 62 1 2 112 9 121 4.88e-25 95.1
MS.gene37249.t1 MTR_8g043650 43.363 113 62 1 2 112 9 121 7.72e-25 94.7
MS.gene37249.t1 MTR_2g093190 44.554 101 54 1 2 100 9 109 1.83e-24 93.6
MS.gene37249.t1 MTR_4g094638 47.525 101 48 2 1 97 1 100 4.88e-24 91.3
MS.gene37249.t1 MTR_1g108580 42.574 101 56 1 2 100 9 109 7.25e-24 92.0
MS.gene37249.t1 MTR_2g105290 39.496 119 70 1 1 119 11 127 7.73e-24 90.5
MS.gene37249.t1 MTR_1g075600 51.899 79 38 0 2 80 9 87 1.83e-23 91.3
MS.gene37249.t1 MTR_3g030780 39.024 123 73 1 2 122 9 131 3.04e-23 87.8
MS.gene37249.t1 MTR_2g085280 49.367 79 40 0 2 80 9 87 3.84e-23 90.1
MS.gene37249.t1 MTR_2g085250 49.367 79 40 0 2 80 9 87 3.92e-23 90.1
MS.gene37249.t1 MTR_0121s0080 43.636 110 60 1 2 109 9 118 4.42e-23 90.1
MS.gene37249.t1 MTR_5g053390 55.072 69 31 0 2 70 9 77 1.07e-22 89.0
MS.gene37249.t1 MTR_8g086290 46.512 86 44 1 2 85 12 97 1.65e-21 84.7
MS.gene37249.t1 MTR_5g055100 46.835 79 42 0 2 80 9 87 2.03e-21 85.9
MS.gene37249.t1 MTR_0003s0590 52.174 69 33 0 1 69 1 69 1.39e-20 84.0
MS.gene37249.t1 MTR_1g105905 45.361 97 51 1 18 112 8 104 1.60e-20 83.2
MS.gene37249.t1 MTR_7g028448 56.140 57 25 0 14 70 24 80 1.39e-19 79.3
MS.gene37249.t1 MTR_4g036915 56.140 57 25 0 14 70 24 80 1.39e-19 79.3
MS.gene37249.t1 MTR_7g062350 44.444 99 53 1 13 109 32 130 1.83e-19 80.9
MS.gene37249.t1 MTR_2g009890 41.818 110 63 1 1 110 1 109 2.19e-19 81.3
MS.gene37249.t1 MTR_5g066180 49.275 69 35 0 1 69 1 69 5.94e-19 79.0
MS.gene37249.t1 MTR_5g066960 56.667 60 26 0 1 60 1 60 6.26e-19 74.7
MS.gene37249.t1 MTR_3g452380 52.113 71 34 0 1 71 16 86 1.16e-18 78.6
MS.gene37249.t1 MTR_7g075870 37.963 108 58 2 1 105 1 102 2.46e-18 77.0
MS.gene37249.t1 MTR_1g053070 49.275 69 35 0 1 69 1 69 3.07e-18 77.8
MS.gene37249.t1 MTR_2g017865 50.704 71 35 0 1 71 16 86 4.03e-18 77.4
MS.gene37249.t1 MTR_8g033220 41.667 96 54 1 1 96 1 94 4.34e-18 76.6
MS.gene37249.t1 MTR_3g005530 49.296 71 36 0 1 71 1 71 4.84e-18 76.6
MS.gene37249.t1 MTR_8g033270 49.275 69 35 0 1 69 1 69 4.91e-18 77.0
MS.gene37249.t1 MTR_8g033220 41.667 96 54 1 1 96 1 94 5.43e-18 76.6
MS.gene37249.t1 MTR_8g087860 39.423 104 60 1 1 104 17 117 1.14e-17 75.9
MS.gene37249.t1 MTR_4g127140 52.113 71 34 0 1 71 11 81 1.97e-17 74.3
MS.gene37249.t1 MTR_5g031000 49.275 69 35 0 1 69 1 69 2.24e-17 75.1
MS.gene37249.t1 MTR_5g031000 49.275 69 35 0 1 69 1 69 2.45e-17 74.7
MS.gene37249.t1 MTR_1g101970 47.826 69 36 0 1 69 1 69 2.61e-17 73.9
MS.gene37249.t1 MTR_3g067875 52.459 61 28 1 18 77 8 68 3.45e-17 70.5
MS.gene37249.t1 MTR_4g102530 47.826 69 36 0 1 69 1 69 3.94e-17 73.9
MS.gene37249.t1 MTR_7g075870 55.172 58 26 0 1 58 1 58 4.34e-17 73.9
MS.gene37249.t1 MTR_6g464720 38.384 99 57 2 1 95 1 99 8.33e-17 73.9
MS.gene37249.t1 MTR_4g093970 45.588 68 37 0 1 68 27 94 1.67e-16 72.8
MS.gene37249.t1 MTR_1g038300 43.038 79 43 1 1 77 1 79 2.04e-16 72.4
MS.gene37249.t1 MTR_5g021270 50.000 62 31 0 1 62 1 62 2.13e-16 72.4
MS.gene37249.t1 MTR_5g021270 50.000 62 31 0 1 62 1 62 2.23e-16 72.4
MS.gene37249.t1 MTR_2g461710 50.877 57 28 0 1 57 1 57 2.26e-16 68.2
MS.gene37249.t1 MTR_4g093030 55.172 58 26 0 1 58 1 58 2.85e-16 70.9
MS.gene37249.t1 MTR_3g113030 50.000 62 31 0 1 62 1 62 2.91e-16 72.0
MS.gene37249.t1 MTR_5g046790 50.000 58 29 0 1 58 1 58 2.91e-16 71.6
MS.gene37249.t1 MTR_5g032520 38.384 99 52 3 1 99 1 90 2.97e-16 72.0
MS.gene37249.t1 MTR_4g109830 42.857 70 39 1 1 69 1 70 3.03e-16 72.0
MS.gene37249.t1 MTR_5g032150 43.478 69 39 0 1 69 1 69 3.46e-16 72.0
MS.gene37249.t1 MTR_4g084740 46.575 73 38 1 1 72 1 73 4.53e-16 72.8
MS.gene37249.t1 MTR_4g109810 34.848 132 69 5 1 116 1 131 5.13e-16 71.6
MS.gene37249.t1 MTR_5g046870 52.632 57 27 0 1 57 1 57 5.21e-16 68.9
MS.gene37249.t1 MTR_1g108500 59.649 57 21 1 18 72 113 169 5.71e-16 72.4
MS.gene37249.t1 MTR_1g029670 37.975 79 47 1 1 77 1 79 7.33e-16 70.1
MS.gene37249.t1 MTR_7g016630 33.333 96 63 1 1 95 1 96 8.09e-16 71.2
MS.gene37249.t1 MTR_8g066260 36.264 91 57 1 1 90 1 91 1.09e-15 70.9
MS.gene37249.t1 MTR_7g016600 52.632 57 27 0 1 57 1 57 1.17e-15 70.9
MS.gene37249.t1 MTR_3g102570 43.836 73 40 1 1 72 1 73 2.43e-15 70.5
MS.gene37249.t1 MTR_3g084980 54.386 57 26 0 1 57 1 57 2.47e-15 69.7
MS.gene37249.t1 MTR_3g067910 49.206 63 32 0 18 80 6 68 2.51e-15 67.0
MS.gene37249.t1 MTR_3g088615 41.538 65 38 0 1 65 1 65 2.61e-15 68.6
MS.gene37249.t1 MTR_8g097090 52.632 57 27 0 1 57 1 57 3.39e-15 69.3
MS.gene37249.t1 MTR_4g036050 45.205 73 39 1 1 72 1 73 3.66e-15 68.6
MS.gene37249.t1 MTR_4g036050 45.205 73 39 1 1 72 1 73 4.06e-15 68.2
MS.gene37249.t1 MTR_6g015975 52.632 57 27 0 1 57 1 57 4.23e-15 69.3
MS.gene37249.t1 MTR_4g036050 45.205 73 39 1 1 72 1 73 4.54e-15 68.6
MS.gene37249.t1 MTR_4g036050 45.205 73 39 1 1 72 1 73 4.97e-15 68.2
MS.gene37249.t1 MTR_5g041650 51.852 54 26 0 1 54 38 91 7.62e-15 69.7
MS.gene37249.t1 MTR_7g075850 57.143 49 21 0 1 49 1 49 1.57e-14 67.8
MS.gene37249.t1 MTR_1g041615 68.182 44 14 0 15 58 19 62 2.26e-14 65.1
MS.gene37249.t1 MTR_3g109930 42.857 70 40 0 1 70 1 70 3.00e-14 65.9
MS.gene37249.t1 MTR_4g108720 38.961 77 45 1 1 75 1 77 4.00e-14 67.4
MS.gene37249.t1 MTR_8g022970 44.118 68 38 0 3 70 19 86 7.25e-13 62.4
MS.gene37249.t1 MTR_3g067870 50.000 52 26 0 18 69 92 143 2.09e-12 60.5
MS.gene37249.t1 MTR_3g437790 49.057 53 26 1 19 70 30 82 1.15e-11 59.3
MS.gene37249.t1 MTR_6g018920 40.000 60 36 0 1 60 1 60 5.08e-11 58.5
MS.gene37249.t1 MTR_2g016210 37.838 74 44 1 1 72 1 74 8.22e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37249.t1 AT3G66656 72.464 69 19 0 1 69 1 69 4.93e-33 114
MS.gene37249.t1 AT2G34440 51.351 111 52 2 1 110 1 110 6.26e-32 111
MS.gene37249.t1 AT2G24840 41.322 121 71 0 1 121 62 182 9.27e-29 105
MS.gene37249.t1 AT5G60440 45.902 122 59 3 2 119 7 125 1.80e-26 100
MS.gene37249.t1 AT1G01530 42.735 117 64 1 1 117 6 119 3.80e-23 90.5
MS.gene37249.t1 AT1G65360 39.450 109 66 0 1 109 6 114 7.74e-22 86.7
MS.gene37249.t1 AT1G47760 43.269 104 51 2 1 96 1 104 7.88e-21 83.2
MS.gene37249.t1 AT4G22950 43.820 89 46 1 1 89 1 85 1.21e-20 82.4
MS.gene37249.t1 AT5G13790 52.174 69 33 0 1 69 1 69 1.39e-20 84.3
MS.gene37249.t1 AT5G13790 52.174 69 33 0 1 69 1 69 1.50e-20 84.3
MS.gene37249.t1 AT4G36590 41.525 118 57 3 2 110 7 121 1.65e-20 83.6
MS.gene37249.t1 AT3G61120 46.154 78 42 0 1 78 1 78 1.70e-20 83.6
MS.gene37249.t1 AT4G37940 41.818 110 63 1 1 110 1 109 2.41e-20 82.4
MS.gene37249.t1 AT4G37940 41.818 110 63 1 1 110 1 109 2.72e-20 82.8
MS.gene37249.t1 AT4G37940 41.818 110 63 1 1 110 1 109 2.90e-20 81.3
MS.gene37249.t1 AT3G57230 52.174 69 33 0 1 69 1 69 3.56e-20 80.5
MS.gene37249.t1 AT2G45660 36.111 108 66 1 1 108 1 105 1.09e-19 79.3
MS.gene37249.t1 AT4G22950 43.820 89 46 1 1 89 1 85 1.33e-19 80.9
MS.gene37249.t1 AT4G22950 43.820 89 46 1 1 89 1 85 1.33e-19 80.9
MS.gene37249.t1 AT3G57230 52.174 69 33 0 1 69 1 69 1.47e-19 80.9
MS.gene37249.t1 AT3G57230 52.174 69 33 0 1 69 1 69 1.47e-19 80.9
MS.gene37249.t1 AT3G57390 50.725 69 34 0 1 69 1 69 1.89e-19 80.5
MS.gene37249.t1 AT1G72350 51.282 78 36 1 2 79 43 118 2.15e-19 80.1
MS.gene37249.t1 AT3G57390 50.725 69 34 0 1 69 1 69 3.73e-19 80.1
MS.gene37249.t1 AT2G45660 36.111 108 66 1 1 108 1 105 4.23e-19 79.3
MS.gene37249.t1 AT2G22630 50.725 69 34 0 1 69 1 69 5.11e-19 79.3
MS.gene37249.t1 AT2G22630 50.725 69 34 0 1 69 1 69 5.11e-19 79.3
MS.gene37249.t1 AT4G09960 50.704 71 35 0 1 71 1 71 1.10e-18 78.2
MS.gene37249.t1 AT4G09960 50.704 71 35 0 1 71 2 72 1.15e-18 78.6
MS.gene37249.t1 AT4G09960 50.704 71 35 0 1 71 1 71 1.17e-18 78.6
MS.gene37249.t1 AT2G22540 41.414 99 49 3 1 99 1 90 1.48e-18 78.6
MS.gene37249.t1 AT2G22540 41.414 99 49 3 1 99 1 90 1.48e-18 78.6
MS.gene37249.t1 AT4G09960 50.704 71 35 0 1 71 11 81 1.61e-18 78.2
MS.gene37249.t1 AT2G45650 49.275 69 35 0 1 69 1 69 1.65e-18 78.6
MS.gene37249.t1 AT2G14210 43.529 85 47 1 1 84 1 85 2.14e-18 77.8
MS.gene37249.t1 AT4G09960 50.704 71 35 0 1 71 27 97 2.39e-18 78.2
MS.gene37249.t1 AT2G14210 43.529 85 47 1 1 84 1 85 2.83e-18 77.4
MS.gene37249.t1 AT4G09960 44.944 89 38 1 1 89 96 173 2.99e-18 79.0
MS.gene37249.t1 AT4G24540 38.947 95 57 1 1 95 1 94 5.64e-18 76.6
MS.gene37249.t1 AT1G29962 46.377 69 37 0 2 70 8 76 7.77e-18 75.5
MS.gene37249.t1 AT3G04100 47.692 65 34 0 2 66 14 78 9.04e-18 75.9
MS.gene37249.t1 AT5G20240 44.304 79 42 1 1 77 1 79 9.63e-18 74.3
MS.gene37249.t1 AT5G20240 44.304 79 42 1 1 77 1 79 2.01e-17 74.7
MS.gene37249.t1 AT1G28460 46.377 69 37 0 2 70 8 76 2.15e-17 74.3
MS.gene37249.t1 AT5G10140 54.386 57 26 0 1 57 1 57 2.99e-17 73.6
MS.gene37249.t1 AT5G65070 51.724 58 28 0 1 58 1 58 3.29e-17 72.8
MS.gene37249.t1 AT2G42830 49.296 71 36 0 1 71 16 86 3.50e-17 74.7
MS.gene37249.t1 AT2G42830 49.296 71 36 0 1 71 16 86 3.52e-17 74.7
MS.gene37249.t1 AT3G58780 49.296 71 36 0 1 71 16 86 4.05e-17 74.7
MS.gene37249.t1 AT3G54340 40.909 88 37 1 1 73 1 88 4.09e-17 74.3
MS.gene37249.t1 AT5G10140 54.386 57 26 0 1 57 1 57 4.38e-17 73.2
MS.gene37249.t1 AT3G58780 49.296 71 36 0 1 71 22 92 5.09e-17 74.7
MS.gene37249.t1 AT4G11880 55.172 58 26 0 1 58 1 58 5.22e-17 73.2
MS.gene37249.t1 AT4G11880 55.172 58 26 0 1 58 1 58 5.22e-17 73.2
MS.gene37249.t1 AT5G10140 53.448 58 27 0 1 58 1 58 5.26e-17 73.2
MS.gene37249.t1 AT5G10140 54.386 57 26 0 1 57 1 57 5.31e-17 73.6
MS.gene37249.t1 AT5G51860 46.575 73 39 0 1 73 1 73 5.43e-17 73.6
MS.gene37249.t1 AT1G77980 47.945 73 37 1 1 72 1 73 6.13e-17 75.1
MS.gene37249.t1 AT5G51860 46.575 73 39 0 1 73 1 73 6.16e-17 73.6
MS.gene37249.t1 AT5G65070 51.724 58 28 0 1 58 1 58 6.69e-17 73.2
MS.gene37249.t1 AT5G51870 46.377 69 37 0 1 69 1 69 7.09e-17 72.4
MS.gene37249.t1 AT5G51870 46.377 69 37 0 1 69 1 69 7.33e-17 73.2
MS.gene37249.t1 AT3G58780 49.296 71 36 0 1 71 16 86 9.08e-17 74.3
MS.gene37249.t1 AT5G51870 46.377 69 37 0 1 69 24 92 1.23e-16 72.4
MS.gene37249.t1 AT5G51870 46.377 69 37 0 1 69 1 69 1.32e-16 72.8
MS.gene37249.t1 AT5G65070 49.231 65 31 1 1 63 1 65 1.33e-16 73.2
MS.gene37249.t1 AT4G18960 50.000 70 35 0 2 71 18 87 1.34e-16 73.6
MS.gene37249.t1 AT1G22130 46.753 77 39 2 1 76 1 76 1.37e-16 74.3
MS.gene37249.t1 AT4G11880 55.172 58 26 0 1 58 1 58 1.47e-16 72.8
MS.gene37249.t1 AT4G11880 55.172 58 26 0 1 58 1 58 1.47e-16 72.8
MS.gene37249.t1 AT5G51870 46.377 69 37 0 1 69 11 79 1.68e-16 72.8
MS.gene37249.t1 AT3G30260 54.386 57 26 0 1 57 1 57 1.84e-16 72.8
MS.gene37249.t1 AT5G65070 51.724 58 28 0 1 58 1 58 1.98e-16 72.8
MS.gene37249.t1 AT1G71692 47.222 72 37 1 1 71 1 72 2.32e-16 72.0
MS.gene37249.t1 AT5G65070 51.724 58 28 0 1 58 1 58 2.48e-16 72.0
MS.gene37249.t1 AT3G58780 55.172 58 26 0 1 58 16 73 2.78e-16 72.4
MS.gene37249.t1 AT2G22540 52.632 57 27 0 1 57 1 57 3.15e-16 72.0
MS.gene37249.t1 AT1G46408 48.684 76 33 2 1 70 1 76 3.15e-16 72.4
MS.gene37249.t1 AT1G77950 45.205 73 39 1 1 72 1 73 3.24e-16 72.4
MS.gene37249.t1 AT1G77950 45.205 73 39 1 1 72 1 73 3.24e-16 72.4
MS.gene37249.t1 AT1G77950 45.205 73 39 1 1 72 1 73 3.24e-16 72.4
MS.gene37249.t1 AT1G77950 45.205 73 39 1 1 72 1 73 3.24e-16 72.4
MS.gene37249.t1 AT3G58780 55.172 58 26 0 1 58 16 73 3.59e-16 72.4
MS.gene37249.t1 AT1G17310 46.512 86 43 2 2 86 48 131 3.73e-16 71.6
MS.gene37249.t1 AT5G62165 42.254 71 41 0 1 71 1 71 4.34e-16 70.1
MS.gene37249.t1 AT5G62165 42.254 71 41 0 1 71 1 71 4.34e-16 70.1
MS.gene37249.t1 AT5G62165 42.254 71 41 0 1 71 1 71 4.34e-16 70.1
MS.gene37249.t1 AT1G17310 46.512 86 43 2 2 86 59 142 5.16e-16 71.6
MS.gene37249.t1 AT5G62165 42.254 71 41 0 1 71 1 71 6.67e-16 69.7
MS.gene37249.t1 AT5G62165 42.254 71 41 0 1 71 1 71 6.67e-16 69.7
MS.gene37249.t1 AT5G62165 42.254 71 41 0 1 71 1 71 6.67e-16 69.7
MS.gene37249.t1 AT5G62165 42.254 71 41 0 1 71 1 71 6.67e-16 69.7
MS.gene37249.t1 AT5G62165 42.254 71 41 0 1 71 1 71 6.67e-16 69.7
MS.gene37249.t1 AT5G62165 42.254 71 41 0 1 71 1 71 7.39e-16 68.2
MS.gene37249.t1 AT1G69540 44.737 76 41 1 1 75 1 76 1.12e-15 72.0
MS.gene37249.t1 AT1G69120 51.724 58 28 0 1 58 1 58 1.13e-15 70.5
MS.gene37249.t1 AT5G62165 42.254 71 41 0 1 71 1 71 1.16e-15 70.1
MS.gene37249.t1 AT5G62165 42.254 71 41 0 1 71 1 71 1.16e-15 70.1
MS.gene37249.t1 AT5G62165 42.254 71 41 0 1 71 1 71 1.19e-15 70.1
MS.gene37249.t1 AT5G62165 42.254 71 41 0 1 71 1 71 1.19e-15 70.1
MS.gene37249.t1 AT5G62165 42.254 71 41 0 1 71 1 71 1.19e-15 70.1
MS.gene37249.t1 AT2G03710 52.632 57 27 0 1 57 1 57 1.20e-15 69.7
MS.gene37249.t1 AT1G69540 44.737 76 41 1 1 75 1 76 1.40e-15 71.6
MS.gene37249.t1 AT5G60910 50.877 57 28 0 1 57 1 57 1.52e-15 70.5
MS.gene37249.t1 AT1G69120 51.724 58 28 0 1 58 1 58 2.21e-15 70.1
MS.gene37249.t1 AT5G15800 52.632 57 27 0 1 57 1 57 2.62e-15 70.1
MS.gene37249.t1 AT1G26310 50.000 58 29 0 1 58 1 58 2.77e-15 70.1
MS.gene37249.t1 AT5G15800 52.632 57 27 0 1 57 1 57 3.80e-15 69.7
MS.gene37249.t1 AT2G03710 52.632 57 27 0 1 57 1 57 3.99e-15 69.3
MS.gene37249.t1 AT2G03710 52.632 57 27 0 1 57 1 57 4.12e-15 69.3
MS.gene37249.t1 AT5G65060 52.727 55 26 0 1 55 1 55 4.17e-15 68.6
MS.gene37249.t1 AT1G24260 52.632 57 27 0 1 57 1 57 4.23e-15 69.3
MS.gene37249.t1 AT3G02310 52.632 57 27 0 1 57 1 57 4.60e-15 68.6
MS.gene37249.t1 AT1G24260 52.632 57 27 0 1 57 1 57 4.91e-15 69.3
MS.gene37249.t1 AT5G23260 61.224 49 19 0 1 49 1 49 4.96e-15 68.9
MS.gene37249.t1 AT1G24260 52.632 57 27 0 1 57 1 57 4.97e-15 69.3
MS.gene37249.t1 AT5G23260 61.224 49 19 0 1 49 1 49 5.52e-15 68.9
MS.gene37249.t1 AT3G02310 52.632 57 27 0 1 57 1 57 5.92e-15 68.9
MS.gene37249.t1 AT5G65060 52.727 55 26 0 1 55 1 55 6.10e-15 67.8
MS.gene37249.t1 AT5G65060 52.727 55 26 0 1 55 1 55 6.23e-15 68.2
MS.gene37249.t1 AT5G65050 50.909 55 27 0 1 55 1 55 6.64e-15 67.4
MS.gene37249.t1 AT5G23260 61.224 49 19 0 1 49 17 65 6.69e-15 68.9
MS.gene37249.t1 AT5G23260 61.224 49 19 0 1 49 17 65 6.96e-15 68.9
MS.gene37249.t1 AT5G65080 50.909 55 27 0 1 55 8 62 8.63e-15 67.4
MS.gene37249.t1 AT5G65080 50.909 55 27 0 1 55 8 62 1.14e-14 67.4
MS.gene37249.t1 AT1G18750 41.558 77 43 1 1 75 1 77 1.66e-14 68.9
MS.gene37249.t1 AT5G65050 50.909 55 27 0 1 55 1 55 1.68e-14 66.6
MS.gene37249.t1 AT5G65050 50.909 55 27 0 1 55 1 55 1.81e-14 66.6
MS.gene37249.t1 AT5G65050 50.909 55 27 0 1 55 1 55 1.92e-14 66.6
MS.gene37249.t1 AT1G18750 41.558 77 43 1 1 75 1 77 2.33e-14 68.2
MS.gene37249.t1 AT2G03060 42.857 77 42 2 1 75 1 77 3.17e-14 67.8
MS.gene37249.t1 AT2G03060 42.857 77 42 2 1 75 1 77 3.17e-14 67.8
MS.gene37249.t1 AT2G03060 42.857 77 42 2 1 75 1 77 3.17e-14 67.8
MS.gene37249.t1 AT2G03060 42.857 77 42 2 1 75 1 77 3.20e-14 67.8
MS.gene37249.t1 AT1G18750 41.558 77 43 1 1 75 1 77 3.52e-14 67.8
MS.gene37249.t1 AT4G37435 29.530 149 70 3 1 120 1 143 5.57e-14 65.5
MS.gene37249.t1 AT1G28450 40.580 69 41 0 2 70 8 76 1.21e-13 64.3
MS.gene37249.t1 AT5G49490 43.056 72 37 1 3 70 46 117 4.81e-13 64.3
MS.gene37249.t1 AT2G26320 43.860 57 32 0 1 57 17 73 5.44e-13 60.8
MS.gene37249.t1 AT1G60920 42.466 73 37 2 3 70 5 77 6.63e-13 62.4
MS.gene37249.t1 AT5G04640 44.444 72 36 2 3 70 5 76 2.47e-12 62.4
MS.gene37249.t1 AT5G38620 40.278 72 39 1 3 70 6 77 2.95e-12 62.4
MS.gene37249.t1 AT5G49420 40.278 72 39 1 3 70 8 79 3.32e-12 62.0
MS.gene37249.t1 AT1G77080 66.667 39 13 0 1 39 1 39 3.35e-12 60.5
MS.gene37249.t1 AT1G77080 66.667 39 13 0 1 39 1 39 4.10e-12 60.1
MS.gene37249.t1 AT1G77080 66.667 39 13 0 1 39 1 39 4.55e-12 59.7
MS.gene37249.t1 AT1G77080 66.667 39 13 0 1 39 1 39 7.16e-12 60.1
MS.gene37249.t1 AT1G77080 66.667 39 13 0 1 39 1 39 9.25e-12 59.7
MS.gene37249.t1 AT1G77080 66.667 39 13 0 1 39 1 39 1.39e-11 59.7
MS.gene37249.t1 AT1G65300 40.278 72 41 2 3 72 2 73 5.09e-11 58.5

Find 25 sgRNAs with CRISPR-Local

Find 29 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCTGATTCTCCGAATA+TGG 0.233220 1.2:-40509205 MS.gene37249:CDS
GGGAACAATCCTTATTCTTT+TGG 0.240671 1.2:-40509303 MS.gene37249:CDS
CCTGGGTGACCAAAAGAATA+AGG 0.337629 1.2:+40509294 None:intergenic
GCTATTGTTGTGTTCTCTCC+AGG 0.379882 1.2:-40509324 MS.gene37249:CDS
AACTTCAGCTCCGCACAAAA+TGG 0.384079 1.2:+40509347 None:intergenic
CCTATGGAATTCATGCGTTT+AGG 0.407607 1.2:+40509234 None:intergenic
CTAGAACTTGTTGAGGTGTT+GGG 0.408328 1.2:-40509171 MS.gene37249:CDS
AGGCTTTAGTTTCAAATACT+TGG 0.421254 1.2:+40509254 None:intergenic
ACTTTCTCAAAGCGTCGAAC+GGG 0.442601 1.2:-40509396 MS.gene37249:CDS
GCAGCAACAACATCAACTCC+TGG 0.473203 1.2:+40509276 None:intergenic
CTATTGTTGTGTTCTCTCCA+GGG 0.489839 1.2:-40509323 MS.gene37249:CDS
CACTTTCTCAAAGCGTCGAA+CGG 0.490261 1.2:-40509397 MS.gene37249:CDS
ATCAGAAGAGGAGTTTCCTA+TGG 0.510389 1.2:+40509218 None:intergenic
TCTAGAACTTGTTGAGGTGT+TGG 0.548141 1.2:-40509172 MS.gene37249:CDS
GAAAGACTCCAACACGAGGC+AGG 0.554822 1.2:-40509421 MS.gene37249:CDS
CCTAAACGCATGAATTCCAT+AGG 0.557834 1.2:-40509234 MS.gene37249:CDS
AAAGAATAAGGATTGTTCCC+TGG 0.565551 1.2:+40509306 None:intergenic
GTCGCAAAATTAAAATAGAG+AGG 0.572448 1.2:-40509446 MS.gene37249:CDS
ATTGAATCTAGAACTTGTTG+AGG 0.572715 1.2:-40509178 MS.gene37249:CDS
CAGCAACAACATCAACTCCT+GGG 0.611229 1.2:+40509277 None:intergenic
TCGCAAAATTAAAATAGAGA+GGG 0.620927 1.2:-40509445 MS.gene37249:CDS
GAAAGTGACCTGCCTCGTGT+TGG 0.631102 1.2:+40509413 None:intergenic
CATATTCGGAGAATCAGAAG+AGG 0.656024 1.2:+40509206 None:intergenic
GTGTTGGGACAAGTTCAAGA+AGG 0.657260 1.2:-40509156 MS.gene37249:CDS
GGGTGAAAGACTCCAACACG+AGG 0.715970 1.2:-40509425 MS.gene37249:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATTCAATTTTTCCATATT+CGG + chr1.2:40509365-40509384 None:intergenic 20.0%
! TCGCAAAATTAAAATAGAGA+GGG - chr1.2:40509109-40509128 MS.gene37249:CDS 25.0%
GTCGCAAAATTAAAATAGAG+AGG - chr1.2:40509108-40509127 MS.gene37249:CDS 30.0%
! AATGAATTGTCCATTTTGTG+CGG - chr1.2:40509197-40509216 MS.gene37249:CDS 30.0%
! AGGCTTTAGTTTCAAATACT+TGG + chr1.2:40509303-40509322 None:intergenic 30.0%
!! ATTGAATCTAGAACTTGTTG+AGG - chr1.2:40509376-40509395 MS.gene37249:CDS 30.0%
!! TATGTCACATTGTTTTGCTT+CGG + chr1.2:40509455-40509474 None:intergenic 30.0%
AAAGAATAAGGATTGTTCCC+TGG + chr1.2:40509251-40509270 None:intergenic 35.0%
! GGGAACAATCCTTATTCTTT+TGG - chr1.2:40509251-40509270 MS.gene37249:CDS 35.0%
ATCAGAAGAGGAGTTTCCTA+TGG + chr1.2:40509339-40509358 None:intergenic 40.0%
CATATTCGGAGAATCAGAAG+AGG + chr1.2:40509351-40509370 None:intergenic 40.0%
CCTAAACGCATGAATTCCAT+AGG - chr1.2:40509320-40509339 MS.gene37249:CDS 40.0%
CCTATGGAATTCATGCGTTT+AGG + chr1.2:40509323-40509342 None:intergenic 40.0%
CTATTGTTGTGTTCTCTCCA+GGG - chr1.2:40509231-40509250 MS.gene37249:CDS 40.0%
CTCTTCTGATTCTCCGAATA+TGG - chr1.2:40509349-40509368 MS.gene37249:CDS 40.0%
!! CTAGAACTTGTTGAGGTGTT+GGG - chr1.2:40509383-40509402 MS.gene37249:CDS 40.0%
!! TCTAGAACTTGTTGAGGTGT+TGG - chr1.2:40509382-40509401 MS.gene37249:CDS 40.0%
AACTTCAGCTCCGCACAAAA+TGG + chr1.2:40509210-40509229 None:intergenic 45.0%
CAGCAACAACATCAACTCCT+GGG + chr1.2:40509280-40509299 None:intergenic 45.0%
CCTGGGTGACCAAAAGAATA+AGG + chr1.2:40509263-40509282 None:intergenic 45.0%
GCTATTGTTGTGTTCTCTCC+AGG - chr1.2:40509230-40509249 MS.gene37249:CDS 45.0%
GTGTTGGGACAAGTTCAAGA+AGG - chr1.2:40509398-40509417 MS.gene37249:CDS 45.0%
! CCTTATTCTTTTGGTCACCC+AGG - chr1.2:40509260-40509279 MS.gene37249:CDS 45.0%
!! ACTTTCTCAAAGCGTCGAAC+GGG - chr1.2:40509158-40509177 MS.gene37249:CDS 45.0%
!! CACTTTCTCAAAGCGTCGAA+CGG - chr1.2:40509157-40509176 MS.gene37249:CDS 45.0%
GCAGCAACAACATCAACTCC+TGG + chr1.2:40509281-40509300 None:intergenic 50.0%
GAAAGACTCCAACACGAGGC+AGG - chr1.2:40509133-40509152 MS.gene37249:CDS 55.0%
GAAAGTGACCTGCCTCGTGT+TGG + chr1.2:40509144-40509163 None:intergenic 55.0%
GGGTGAAAGACTCCAACACG+AGG - chr1.2:40509129-40509148 MS.gene37249:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 40509101 40509475 40509101 ID=MS.gene37249
chr1.2 mRNA 40509101 40509475 40509101 ID=MS.gene37249.t1;Parent=MS.gene37249
chr1.2 exon 40509101 40509475 40509101 ID=MS.gene37249.t1.exon1;Parent=MS.gene37249.t1
chr1.2 CDS 40509101 40509475 40509101 ID=cds.MS.gene37249.t1;Parent=MS.gene37249.t1
Gene Sequence

>MS.gene37249

ATGGGTCGTCGCAAAATTAAAATAGAGAGGGTGAAAGACTCCAACACGAGGCAGGTCACTTTCTCAAAGCGTCGAACGGGCTTATTCAAGAAAGCAAATGAATTGTCCATTTTGTGCGGAGCTGAAGTTGCTATTGTTGTGTTCTCTCCAGGGAACAATCCTTATTCTTTTGGTCACCCAGGAGTTGATGTTGTTGCTGCCAAGTATTTGAAACTAAAGCCTAAACGCATGAATTCCATAGGAAACTCCTCTTCTGATTCTCCGAATATGGAAAAATTGAATCTAGAACTTGTTGAGGTGTTGGGACAAGTTCAAGAAGGTGAAAAGCAAGCTGAGAATCATGATGAGATTCCGAAGCAAAACAATGTGACATAA
Protein sequence

>MS.gene37249.t1

MGRRKIKIERVKDSNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNNPYSFGHPGVDVVAAKYLKLKPKRMNSIGNSSSDSPNMEKLNLELVEVLGQVQEGEKQAENHDEIPKQNNVT