AlfalfaGEDB | MS.gene37252

M. sativa cultivar XinJiangDaYe / MS.gene37252

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0046983 GO:0097159 GO:1901363
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37252.t1	RHN79279.1	96.1	180	6	1	1	179	1	180	6.00E-85	323.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37252.t1	O64703	42.1	171	89	3	1	161	1	171	2.3e-24	113.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37252.t1	A0A396JLY3	96.1	180	6	1	1	179	1	180	4.3e-85	323.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene37252.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37252.t1	MTR_1g063160	81.006	179	34	0	1	179	1	179	1.06e-104	298
MS.gene37252.t1	MTR_1g047550	79.330	179	37	0	1	179	1	179	1.59e-102	292
MS.gene37252.t1	MTR_1g054265	85.119	168	25	0	1	168	1	168	2.66e-102	291
MS.gene37252.t1	MTR_8g079502	79.518	166	34	0	1	166	1	166	2.57e-93	269
MS.gene37252.t1	MTR_4g131030	69.681	188	40	1	1	171	1	188	5.63e-90	262
MS.gene37252.t1	MTR_8g051580	57.865	178	75	0	1	178	1	178	5.20e-70	210
MS.gene37252.t1	MTR_8g046350	52.381	168	74	2	1	168	1	162	1.74e-53	167
MS.gene37252.t1	MTR_4g094632	39.634	164	87	3	1	164	1	152	6.42e-31	110
MS.gene37252.t1	MTR_3g080940	39.053	169	86	4	1	157	8	171	3.64e-29	107
MS.gene37252.t1	MTR_3g052870	42.029	138	77	2	2	136	9	146	4.96e-29	107

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37252.t1	AT2G34440	41.667	180	77	5	1	161	1	171	2.71e-35	122
MS.gene37252.t1	AT3G66656	74.242	66	17	0	1	66	1	66	2.61e-31	112
MS.gene37252.t1	AT2G24840	40.800	125	66	2	1	121	62	182	5.26e-28	105
MS.gene37252.t1	AT5G60440	40.127	157	75	3	2	154	7	148	1.16e-26	102
MS.gene37252.t1	AT1G01530	41.007	139	78	2	1	139	6	140	3.15e-24	95.5
MS.gene37252.t1	AT1G65360	37.168	113	71	0	1	113	6	118	6.59e-21	86.3
MS.gene37252.t1	AT3G57230	33.544	158	92	5	1	158	1	145	2.11e-20	82.8
MS.gene37252.t1	AT3G57230	33.136	169	100	5	1	169	1	156	1.24e-19	83.2
MS.gene37252.t1	AT3G57230	33.136	169	100	5	1	169	1	156	1.24e-19	83.2
MS.gene37252.t1	AT1G47760	42.000	100	46	2	1	100	1	88	1.29e-19	82.0

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Find 31 sgRNAs with CRISPR-Local

Find 37 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGTAAGGATTGTCACC+TGG	0.657655	1.2:+40472853	None:intergenic
ACATTCTCAAAGCGTCGGAC+GGG	0.532546	1.2:-40472943	MS.gene37252:CDS
AGGCTTTAGTTCAAGGTGCT+TGG	0.460931	1.2:+40472801	None:intergenic
AGGTCACATTCTCAAAGCGT+CGG	0.637904	1.2:-40472948	MS.gene37252:CDS
ATATTGGAAGAATCAGAAGA+GGG	0.595456	1.2:+40472754	None:intergenic
ATGTATGATGCTTCTAGCTC+AGG	0.444160	1.2:-40472539	MS.gene37252:CDS
CACATTCTCAAAGCGTCGGA+CGG	0.538823	1.2:-40472944	MS.gene37252:CDS
CAGAATCTCATCATGAGTCT+CGG	0.564344	1.2:+40472669	None:intergenic
CAGCAACAACATCAACTCCT+GGG	0.611229	1.2:+40472824	None:intergenic
CATATTGGAAGAATCAGAAG+AGG	0.623619	1.2:+40472753	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATTGGAAGAATCAGAAGA+GGG	+	chr1.2:40472732-40472751	None:intergenic	30.0%
GTCGCAAAATTAAAATTGAG+AGG	-	chr1.2:40472490-40472509	MS.gene37252:CDS	30.0%
CATATTGGAAGAATCAGAAG+AGG	+	chr1.2:40472733-40472752	None:intergenic	35.0%
CTCTTCTGATTCTTCCAATA+TGG	-	chr1.2:40472731-40472750	MS.gene37252:CDS	35.0%
TATTGGAAGAATCAGAAGAG+GGG	+	chr1.2:40472731-40472750	None:intergenic	35.0%
TTGAACTAAAGCCTAAACGT+AGG	-	chr1.2:40472691-40472710	MS.gene37252:CDS	35.0%
AAAGAGTAAGGATTGTCACC+TGG	+	chr1.2:40472633-40472652	None:intergenic	40.0%
CAGAATCTCATCATGAGTCT+CGG	+	chr1.2:40472817-40472836	None:intergenic	40.0%
AGGTCACATTCTCAAAGCGT+CGG	-	chr1.2:40472535-40472554	MS.gene37252:CDS	45.0%
CAGCAACAACATCAACTCCT+GGG	+	chr1.2:40472662-40472681	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	40472483	40473022	40472483	ID=MS.gene37252
chr1.2	mRNA	40472483	40473022	40472483	ID=MS.gene37252.t1;Parent=MS.gene37252
chr1.2	exon	40472483	40473022	40472483	ID=MS.gene37252.t1.exon1;Parent=MS.gene37252.t1
chr1.2	CDS	40472483	40473022	40472483	ID=cds.MS.gene37252.t1;Parent=MS.gene37252.t1

Gene Sequence

>MS.gene37252

ATGGGTCGTCGCAAAATTAAAATTGAGAGGGTGAAAGACTCCAATACGAGGCAGGTCACATTCTCAAAGCGTCGGACGGGCTTATTCAAGAAAGCAAATGAATTGTCGATTTTGTGCGGAGCAGAAGTGGCTATTGTTGTGTTCTCTCCAGGTGACAATCCTTACTCTTTTGGTCACCCAGGAGTTGATGTTGTTGCTGCCAAGCACCTTGAACTAAAGCCTAAACGTAGGAACTCTGAAGGAAACCCCTCTTCTGATTCTTCCAATATGGAAAAATTGAATCAAGAACTTGCTGAGCTGTTGGCACAAATCCGAGAAGGTGAAAAGAAAGCCGAGACTCATGATGAGATTCTGAAGCAAAATGATGTGGCAAAACTCTCAGAGCTTAAAGAATTGAGAGATTCGTACAAAGATCTTCAAGATTGCATAAAATTGCGTCTTAGTGATATTGAGATATCAGAATGTATGATGCTTCTAGCTCAGGATCCAGTGGTGGGAAGAAAAGCGAAAACGTCAAAAAAGAAAAGAAGAAAAAATTGA

Protein sequence

>MS.gene37252.t1

MGRRKIKIERVKDSNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGDNPYSFGHPGVDVVAAKHLELKPKRRNSEGNPSSDSSNMEKLNQELAELLAQIREGEKKAETHDEILKQNDVAKLSELKELRDSYKDLQDCIKLRLSDIEISECMMLLAQDPVVGRKAKTSKKKRRKN