AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37289

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37289.t1 MTR_1g053835 96.104 231 9 0 1 231 197 427 3.06e-163 458
MS.gene37289.t1 MTR_7g093030 67.281 217 66 2 9 224 159 371 4.03e-92 276
MS.gene37289.t1 MTR_7g098250 54.118 170 69 3 52 212 252 421 2.07e-57 189
MS.gene37289.t1 MTR_7g093030 69.767 129 39 0 9 137 159 287 1.14e-55 179
MS.gene37289.t1 MTR_1g080330 55.488 164 59 4 57 206 166 329 5.82e-53 175
MS.gene37289.t1 MTR_7g088070 51.316 152 65 2 53 195 33 184 3.89e-51 167
MS.gene37289.t1 MTR_2g027860 50.296 169 66 3 62 212 49 217 6.38e-51 168
MS.gene37289.t1 MTR_7g115530 52.727 165 66 4 61 217 217 377 4.00e-49 166
MS.gene37289.t1 MTR_1g053830 75.758 99 24 0 45 143 1 99 4.67e-49 156
MS.gene37289.t1 MTR_7g088070 50.000 156 65 3 53 195 33 188 5.92e-49 162
MS.gene37289.t1 MTR_1g080330 58.974 117 42 3 57 167 166 282 1.13e-40 140
MS.gene37289.t1 MTR_6g032990 45.562 169 66 3 58 204 38 202 2.61e-40 142
MS.gene37289.t1 MTR_2g086450 43.011 186 75 4 40 203 27 203 1.98e-39 140
MS.gene37289.t1 MTR_1g053800 44.271 192 99 4 4 193 124 309 2.08e-37 133
MS.gene37289.t1 MTR_7g068600 50.725 138 62 4 50 182 2 138 4.69e-37 130
MS.gene37289.t1 MTR_7g115530 56.881 109 45 2 61 167 217 325 5.34e-37 132
MS.gene37289.t1 MTR_5g027440 45.517 145 65 2 62 192 25 169 9.02e-37 130
MS.gene37289.t1 MTR_4g081710 42.953 149 70 3 58 192 13 160 1.62e-34 126
MS.gene37289.t1 MTR_5g041350 39.073 151 78 1 58 194 11 161 2.13e-34 126
MS.gene37289.t1 MTR_6g444980 40.606 165 72 3 58 209 31 182 3.49e-34 126
MS.gene37289.t1 MTR_2g027800 43.537 147 74 4 43 185 21 162 7.35e-34 123
MS.gene37289.t1 MTR_2g027800 40.373 161 73 4 43 185 21 176 2.42e-32 120
MS.gene37289.t1 MTR_6g444980 43.165 139 58 2 58 183 31 161 1.96e-31 118
MS.gene37289.t1 MTR_7g093010 42.515 167 86 3 22 185 180 339 1.49e-29 113
MS.gene37289.t1 MTR_1g090670 40.000 135 70 2 62 185 44 178 6.71e-27 105
MS.gene37289.t1 MTR_7g115530 61.972 71 27 0 61 131 217 287 1.63e-26 104
MS.gene37289.t1 MTR_7g115530 65.152 66 23 0 61 126 217 282 9.46e-26 103
MS.gene37289.t1 MTR_7g115530 67.925 53 17 0 61 113 217 269 4.71e-20 86.3
MS.gene37289.t1 MTR_7g115530 67.308 52 17 0 61 112 217 268 3.83e-19 84.3
MS.gene37289.t1 MTR_4g097835 87.805 41 5 0 127 167 8 48 8.82e-18 74.7
MS.gene37289.t1 MTR_2g023580 63.636 55 20 0 64 118 57 111 4.34e-17 77.8
MS.gene37289.t1 MTR_7g069660 52.055 73 34 1 64 136 73 144 1.31e-16 77.8
MS.gene37289.t1 MTR_8g086410 61.818 55 21 0 64 118 111 165 1.63e-16 78.2
MS.gene37289.t1 MTR_8g086410 61.818 55 21 0 64 118 113 167 1.65e-16 78.2
MS.gene37289.t1 MTR_2g084230 59.677 62 24 1 64 125 99 159 2.03e-16 77.0
MS.gene37289.t1 MTR_2g084230 59.677 62 24 1 64 125 99 159 2.39e-16 77.4
MS.gene37289.t1 MTR_6g071625 60.000 55 22 0 64 118 204 258 4.82e-16 76.3
MS.gene37289.t1 MTR_8g066310 60.000 55 22 0 64 118 175 229 8.12e-16 75.9
MS.gene37289.t1 MTR_3g064840 60.000 55 22 0 64 118 276 330 8.15e-16 76.3
MS.gene37289.t1 MTR_5g029470 60.000 55 22 0 64 118 221 275 1.01e-15 75.9
MS.gene37289.t1 MTR_0223s0040 63.462 52 19 0 64 115 20 71 1.55e-15 74.3
MS.gene37289.t1 MTR_2g016220 57.627 59 25 0 60 118 87 145 2.79e-15 74.3
MS.gene37289.t1 MTR_2g016220 57.627 59 25 0 60 118 87 145 2.99e-15 74.3
MS.gene37289.t1 MTR_1g112370 63.462 52 19 0 64 115 24 75 3.70e-15 73.6
MS.gene37289.t1 MTR_1g021520 52.381 63 30 0 64 126 128 190 4.93e-15 72.8
MS.gene37289.t1 MTR_3g450310 54.237 59 27 0 60 118 17 75 4.93e-15 71.6
MS.gene37289.t1 MTR_8g086410 59.615 52 21 0 64 115 113 164 7.54e-15 73.2
MS.gene37289.t1 MTR_2g016220 58.491 53 22 0 60 112 87 139 1.76e-13 68.9
MS.gene37289.t1 MTR_4g113140 43.820 89 45 1 33 121 211 294 4.61e-13 68.2
MS.gene37289.t1 MTR_1g093080 51.667 60 29 0 62 121 211 270 8.08e-13 67.0
MS.gene37289.t1 MTR_4g021790 50.877 57 27 1 60 116 166 221 1.27e-12 65.9
MS.gene37289.t1 MTR_4g021855 47.826 69 33 2 50 116 154 221 3.18e-12 65.1
MS.gene37289.t1 MTR_1g013180 51.471 68 30 2 57 124 337 401 3.60e-12 65.9
MS.gene37289.t1 MTR_4g086835 53.448 58 27 0 59 116 271 328 3.97e-12 65.5
MS.gene37289.t1 MTR_4g131600 48.571 70 34 2 58 126 197 265 4.16e-12 65.5
MS.gene37289.t1 MTR_5g014040 45.570 79 39 2 43 118 289 366 6.58e-12 64.7
MS.gene37289.t1 MTR_2g450070 54.545 55 24 1 62 116 213 266 6.59e-12 64.7
MS.gene37289.t1 MTR_2g450070 54.545 55 24 1 62 116 213 266 7.38e-12 64.7
MS.gene37289.t1 MTR_5g054300 41.304 92 48 2 30 116 162 252 8.11e-12 64.3
MS.gene37289.t1 MTR_4g121020 51.667 60 28 1 57 116 106 164 8.19e-12 64.7
MS.gene37289.t1 MTR_5g017980 54.386 57 26 0 60 116 191 247 9.02e-12 63.9
MS.gene37289.t1 MTR_4g121020 51.667 60 28 1 57 116 210 268 9.84e-12 64.3
MS.gene37289.t1 MTR_4g121020 51.667 60 28 1 57 116 210 268 1.01e-11 64.3
MS.gene37289.t1 MTR_1g032570 50.847 59 28 1 58 116 127 184 2.38e-11 63.2
MS.gene37289.t1 MTR_1g032570 50.847 59 28 1 58 116 196 253 3.31e-11 62.8
MS.gene37289.t1 MTR_1g013170 56.364 55 23 1 62 116 191 244 4.47e-11 62.4
MS.gene37289.t1 MTR_2g034960 49.153 59 29 1 58 116 207 264 6.18e-11 62.0
MS.gene37289.t1 MTR_3g086100 51.667 60 28 1 57 116 123 181 7.08e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37289.t1 AT5G06800 67.045 176 50 4 25 195 154 326 9.49e-72 223
MS.gene37289.t1 AT5G06800 65.193 181 50 5 25 195 154 331 2.67e-69 217
MS.gene37289.t1 AT4G28610 56.522 161 63 5 45 202 212 368 1.53e-53 177
MS.gene37289.t1 AT5G29000 58.451 142 54 3 55 191 181 322 6.37e-53 175
MS.gene37289.t1 AT5G29000 58.451 142 54 3 55 191 181 322 6.37e-53 175
MS.gene37289.t1 AT5G29000 58.451 142 54 3 55 191 224 365 1.07e-52 175
MS.gene37289.t1 AT2G01060 52.663 169 71 5 53 215 3 168 1.04e-51 169
MS.gene37289.t1 AT3G04450 45.588 204 93 6 14 212 157 347 1.51e-51 172
MS.gene37289.t1 AT3G04450 45.588 204 93 6 14 212 157 347 1.51e-51 172
MS.gene37289.t1 AT3G04450 45.588 204 93 6 14 212 197 387 5.28e-51 171
MS.gene37289.t1 AT3G13040 46.597 191 90 5 35 214 211 400 2.33e-47 162
MS.gene37289.t1 AT3G13040 46.597 191 90 5 35 214 211 400 2.33e-47 162
MS.gene37289.t1 AT3G13040 46.597 191 90 5 35 214 211 400 2.33e-47 162
MS.gene37289.t1 AT2G20400 56.923 130 54 2 62 189 231 360 2.13e-44 153
MS.gene37289.t1 AT2G20400 56.489 131 54 3 62 189 231 361 1.24e-42 149
MS.gene37289.t1 AT5G18240 47.239 163 64 4 58 203 41 198 1.25e-40 143
MS.gene37289.t1 AT5G18240 47.239 163 64 4 58 203 41 198 1.25e-40 143
MS.gene37289.t1 AT3G04030 49.080 163 61 4 58 203 41 198 1.58e-39 140
MS.gene37289.t1 AT5G06800 90.769 65 6 0 62 126 192 256 4.50e-38 134
MS.gene37289.t1 AT1G69580 45.806 155 63 3 58 192 30 183 6.45e-38 135
MS.gene37289.t1 AT5G18240 46.626 163 63 5 58 203 41 196 1.29e-37 135
MS.gene37289.t1 AT1G69580 44.516 155 66 2 58 192 30 184 2.42e-37 133
MS.gene37289.t1 AT4G13640 41.916 167 81 3 41 191 14 180 1.16e-36 130
MS.gene37289.t1 AT3G24120 42.515 167 75 3 47 192 26 192 1.37e-36 130
MS.gene37289.t1 AT3G04030 47.853 163 62 5 58 203 41 197 2.16e-36 132
MS.gene37289.t1 AT1G79430 41.111 180 85 5 22 192 2 169 6.16e-36 130
MS.gene37289.t1 AT5G18240 44.785 163 62 5 58 203 41 192 3.56e-35 129
MS.gene37289.t1 AT5G18240 44.785 163 62 5 58 203 41 192 3.56e-35 129
MS.gene37289.t1 AT4G13640 41.176 170 81 4 41 191 14 183 1.54e-34 125
MS.gene37289.t1 AT3G24120 41.765 170 75 4 47 192 26 195 1.86e-34 125
MS.gene37289.t1 AT5G45580 43.125 160 61 4 62 196 7 161 1.98e-34 124
MS.gene37289.t1 AT5G45580 43.125 160 61 4 62 196 23 177 2.34e-34 124
MS.gene37289.t1 AT3G04030 46.626 163 59 5 58 203 41 192 4.26e-34 126
MS.gene37289.t1 AT2G01060 51.639 122 53 4 97 215 1 119 1.49e-31 115
MS.gene37289.t1 AT3G04450 55.556 90 34 2 33 122 215 298 1.07e-27 107
MS.gene37289.t1 AT3G12730 39.645 169 85 7 62 213 23 191 2.90e-27 104
MS.gene37289.t1 AT5G29000 63.768 69 25 0 57 125 226 294 1.19e-26 104
MS.gene37289.t1 AT3G04030 44.882 127 48 4 94 203 1 122 1.31e-19 85.9
MS.gene37289.t1 AT1G79430 42.857 105 53 3 94 192 1 104 6.91e-19 83.6
MS.gene37289.t1 AT4G04605 55.385 65 29 0 51 115 3 67 9.99e-18 79.3
MS.gene37289.t1 AT2G42660 53.731 67 31 0 60 126 48 114 2.04e-17 79.0
MS.gene37289.t1 AT2G06020 46.053 76 40 1 43 118 68 142 1.44e-16 77.4
MS.gene37289.t1 AT2G02060 49.383 81 33 1 43 115 2 82 2.25e-16 76.3
MS.gene37289.t1 AT2G02060 49.383 81 33 1 43 115 2 82 2.25e-16 76.3
MS.gene37289.t1 AT2G38300 55.556 63 27 1 64 126 56 117 3.63e-16 76.6
MS.gene37289.t1 AT5G16560 60.000 55 22 0 64 118 221 275 6.88e-16 76.3
MS.gene37289.t1 AT1G14600 63.462 52 19 0 64 115 25 76 7.61e-16 74.7
MS.gene37289.t1 AT1G32240 60.000 55 22 0 64 118 215 269 9.58e-16 75.5
MS.gene37289.t1 AT1G32240 60.000 55 22 0 64 118 215 269 1.04e-15 75.5
MS.gene37289.t1 AT5G18240 39.370 127 49 5 94 203 1 116 1.10e-15 75.1
MS.gene37289.t1 AT2G40260 53.623 69 27 1 55 118 70 138 2.16e-15 74.7
MS.gene37289.t1 AT4G17695 60.000 55 22 0 64 118 166 220 2.68e-15 73.9
MS.gene37289.t1 AT5G42630 44.828 87 42 1 64 144 107 193 3.11e-15 72.4
MS.gene37289.t1 AT5G42630 44.828 87 42 1 64 144 107 193 3.77e-15 73.2
MS.gene37289.t1 AT4G04580 49.231 65 33 0 51 115 3 67 1.73e-14 69.3
MS.gene37289.t1 AT3G04030 41.732 127 46 5 94 203 1 116 1.95e-14 71.6
MS.gene37289.t1 AT4G37180 62.264 53 20 0 64 116 212 264 2.43e-14 71.6
MS.gene37289.t1 AT4G37180 62.264 53 20 0 64 116 219 271 3.35e-14 71.2
MS.gene37289.t1 AT4G04555 50.746 67 28 1 54 115 1 67 2.88e-13 64.3
MS.gene37289.t1 AT2G03500 50.000 70 32 1 62 128 233 302 5.44e-13 67.8
MS.gene37289.t1 AT5G58080 53.226 62 28 1 55 116 187 247 8.23e-13 67.8
MS.gene37289.t1 AT3G16857 58.182 55 22 1 62 116 167 220 1.38e-12 67.0
MS.gene37289.t1 AT3G16857 58.182 55 22 1 62 116 237 290 1.81e-12 66.6
MS.gene37289.t1 AT3G16857 58.182 55 22 1 62 116 237 290 1.93e-12 66.6
MS.gene37289.t1 AT4G37180 61.224 49 19 0 64 112 212 260 1.24e-11 63.2
MS.gene37289.t1 AT3G25790 50.000 58 29 0 67 124 201 258 1.61e-11 63.5
MS.gene37289.t1 AT4G31920 53.571 56 25 1 62 117 183 237 1.77e-11 63.5
MS.gene37289.t1 AT1G49190 45.070 71 33 2 62 126 215 285 3.63e-11 62.4
MS.gene37289.t1 AT2G01760 50.877 57 27 1 60 116 133 188 3.95e-11 62.0
MS.gene37289.t1 AT1G25550 46.667 75 36 1 62 136 209 279 4.19e-11 62.0
MS.gene37289.t1 AT2G01760 50.877 57 27 1 60 116 198 253 7.08e-11 61.6
MS.gene37289.t1 AT2G40970 42.105 76 41 2 43 116 84 158 8.17e-11 60.5
MS.gene37289.t1 AT2G01760 50.877 57 27 1 60 116 226 281 8.82e-11 61.2
MS.gene37289.t1 AT3G10760 39.785 93 54 2 25 116 67 158 9.81e-11 60.8

Find 31 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATTGAACACTCAAAATT+TGG 0.191936 1.2:-39698263 MS.gene37289:CDS
TCAATATCTTTAGGACTAAT+TGG 0.223277 1.2:+39698217 None:intergenic
TTTCCATTAGAATGAATTAA+TGG 0.240080 1.2:+39701068 None:intergenic
TCCATTACAAGCAGGGTTTC+CGG 0.258363 1.2:+39700829 None:intergenic
AGTCCATTAATTCATTCTAA+TGG 0.307810 1.2:-39701071 MS.gene37289:CDS
TACTACTTGTCTTCTGTTGT+TGG 0.310590 1.2:+39698290 None:intergenic
CCCTGCTTGTAATGGATCTT+CGG 0.348408 1.2:-39700822 MS.gene37289:CDS
AAATTACCTTGAGCTTGTTC+TGG 0.349173 1.2:+39700293 None:intergenic
GGAAATGTCTCAACGAATTC+CGG 0.350677 1.2:-39700848 MS.gene37289:CDS
CAACACCGAAAGCGATATTA+AGG 0.350678 1.2:-39700391 MS.gene37289:CDS
ACATTTCCTGTTGACATAGT+TGG 0.376397 1.2:+39700863 None:intergenic
ATGGTAACCTCAATATCTTT+AGG 0.378705 1.2:+39698208 None:intergenic
ATCAGCCTTAATATCGCTTT+CGG 0.385906 1.2:+39700386 None:intergenic
CTCTCTCCAACTATGTCAAC+AGG 0.402161 1.2:-39700869 MS.gene37289:CDS
AAAATTACAATTGCGAATAG+AGG 0.460707 1.2:-39698344 MS.gene37289:CDS
TCCGGAAACCCTGCTTGTAA+TGG 0.462303 1.2:-39700830 MS.gene37289:CDS
AATTAGTCCTAAAGATATTG+AGG 0.504863 1.2:-39698215 MS.gene37289:CDS
GTTGAGTGTGTGAATCGCCT+TGG 0.509079 1.2:-39700749 MS.gene37289:CDS
CAAGTAAAACACGAATAAGA+TGG 0.534054 1.2:-39700796 MS.gene37289:CDS
ACCGAAGATCCATTACAAGC+AGG 0.535701 1.2:+39700821 None:intergenic
CAGTGGCTTGCAAATTAGAG+AGG 0.550038 1.2:-39699218 MS.gene37289:CDS
CCGAAGATCCATTACAAGCA+GGG 0.557698 1.2:+39700822 None:intergenic
AGCTGCAGCTAGACGTTCAG+AGG 0.587380 1.2:-39699189 MS.gene37289:CDS
GAAAGCGATATTAAGGCTGA+TGG 0.589838 1.2:-39700384 MS.gene37289:CDS
GAGTGTGTGAATCGCCTTGG+TGG 0.595652 1.2:-39700746 MS.gene37289:CDS
TTAAGGCTGATGGATTCAGA+TGG 0.601499 1.2:-39700374 MS.gene37289:CDS
CAACAGAAGACAAGTAGTAG+TGG 0.631876 1.2:-39698286 MS.gene37289:CDS
GCGTCTTCATGAACAACTAG+AGG 0.636358 1.2:-39699167 MS.gene37289:intron
TATATGCCAGAACAAGCTCA+AGG 0.643937 1.2:-39700299 MS.gene37289:intron
ACTTACTCTCGGCACCACCA+AGG 0.691778 1.2:+39700732 None:intergenic
CAATTGCGAATAGAGGAACA+AGG 0.704087 1.2:-39698337 MS.gene37289:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATAAAAGTAAATTATA+AGG + chr1.2:39698244-39698263 None:intergenic 10.0%
!! AATTATTAAATGATAAATAG+AGG - chr1.2:39699705-39699724 MS.gene37289:intron 10.0%
!! TAATAAGAAAAAAAAATCAA+AGG - chr1.2:39700612-39700631 MS.gene37289:intron 10.0%
!! TATTATAATAAACAATCACT+CGG - chr1.2:39700550-39700569 MS.gene37289:intron 15.0%
!! TCTAAGAAAATAAAAAACTT+CGG - chr1.2:39700643-39700662 MS.gene37289:intron 15.0%
!! TTAGAATTTATATTCAGTAA+GGG + chr1.2:39699832-39699851 None:intergenic 15.0%
!!! AATTTTCTTACATTAATTTC+TGG - chr1.2:39700870-39700889 MS.gene37289:CDS 15.0%
!!! TTCTTGATTGTTTATTTTAT+CGG + chr1.2:39698588-39698607 None:intergenic 15.0%
!!! TTGTTTCTATTTTCATTTAT+TGG - chr1.2:39698259-39698278 MS.gene37289:CDS 15.0%
!!! TTTAGAATTTATATTCAGTA+AGG + chr1.2:39699833-39699852 None:intergenic 15.0%
!! ATTGTTATGTTCTATAATTC+CGG - chr1.2:39699951-39699970 MS.gene37289:intron 20.0%
!! GAATTATAGAACATAACAAT+CGG + chr1.2:39699951-39699970 None:intergenic 20.0%
!! TATCTATAATGTAAAGTACA+TGG - chr1.2:39699025-39699044 MS.gene37289:intron 20.0%
!! TCGATAAGATAAAATAAACT+AGG - chr1.2:39699419-39699438 MS.gene37289:intron 20.0%
!! TGAACTTTAAATTTCATAGA+TGG + chr1.2:39700361-39700380 None:intergenic 20.0%
!! TGTCACAAAATAATGTATAA+AGG + chr1.2:39700125-39700144 None:intergenic 20.0%
!! TTTCCATTAGAATGAATTAA+TGG + chr1.2:39698186-39698205 None:intergenic 20.0%
!!! AATTCAACTATAGATGATTT+TGG + chr1.2:39700496-39700515 None:intergenic 20.0%
!!! AGTTTTTTATTTTCTTAGAC+TGG + chr1.2:39700642-39700661 None:intergenic 20.0%
! AAAAAGCTCAAAACAACTTA+TGG - chr1.2:39699519-39699538 MS.gene37289:intron 25.0%
! AAAATTACAATTGCGAATAG+AGG - chr1.2:39700907-39700926 MS.gene37289:CDS 25.0%
! AAAGAGAAGATGAAAGATAA+CGG + chr1.2:39698727-39698746 None:intergenic 25.0%
! AAGAAACATATCCGATATTA+TGG - chr1.2:39700688-39700707 MS.gene37289:intron 25.0%
! AATTAGTCCTAAAGATATTG+AGG - chr1.2:39701036-39701055 MS.gene37289:intron 25.0%
! ACTGAAATTCTCCATAATAT+CGG + chr1.2:39700702-39700721 None:intergenic 25.0%
! AGAAAATACAAATACTAAGC+AGG + chr1.2:39700831-39700850 None:intergenic 25.0%
! AGTCCATTAATTCATTCTAA+TGG - chr1.2:39698180-39698199 MS.gene37289:CDS 25.0%
! ATATCGGATATGTTTCTTTA+AGG + chr1.2:39700686-39700705 None:intergenic 25.0%
! ATTATGAGTACGTTGAAATA+CGG + chr1.2:39700283-39700302 None:intergenic 25.0%
! GGAGTTTAAAAAAATGTCTA+TGG + chr1.2:39700810-39700829 None:intergenic 25.0%
! TAAAAAAATGTCTATGGATG+CGG + chr1.2:39700804-39700823 None:intergenic 25.0%
! TATCGTAATATCAAGTTTCA+TGG + chr1.2:39700212-39700231 None:intergenic 25.0%
! TGTGGTTATAAACTAATCTA+AGG - chr1.2:39699122-39699141 MS.gene37289:intron 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr1.2:39699298-39699317 MS.gene37289:intron 25.0%
!! CAACTTTTCTAACATATGAA+AGG + chr1.2:39699685-39699704 None:intergenic 25.0%
!! CTTCTTTATTACAACTTTTC+AGG + chr1.2:39699647-39699666 None:intergenic 25.0%
!!! TCAATATCTTTAGGACTAAT+TGG + chr1.2:39701037-39701056 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG - chr1.2:39699285-39699304 MS.gene37289:intron 25.0%
!!! TTTCTTTTCATAATTTGCAG+TGG - chr1.2:39700016-39700035 MS.gene37289:intron 25.0%
AAAACAATGGAGAGAGAAAA+AGG - chr1.2:39699311-39699330 MS.gene37289:intron 30.0%
AAGTAAGTAGCATTACGATT+TGG + chr1.2:39699922-39699941 None:intergenic 30.0%
AAGTGAAGATTAAGACTAAC+TGG + chr1.2:39699770-39699789 None:intergenic 30.0%
ACAAACTGTTAACATGTTTC+AGG - chr1.2:39699852-39699871 MS.gene37289:intron 30.0%
ACATGGTGTATGAATTTAAC+AGG - chr1.2:39699042-39699061 MS.gene37289:intron 30.0%
AGTCTTAATCTTCACTTCAA+TGG - chr1.2:39699773-39699792 MS.gene37289:intron 30.0%
ATGGTAACCTCAATATCTTT+AGG + chr1.2:39701046-39701065 None:intergenic 30.0%
CAAACTGTTAACATGTTTCA+GGG - chr1.2:39699853-39699872 MS.gene37289:intron 30.0%
CAAGTAAAACACGAATAAGA+TGG - chr1.2:39698455-39698474 MS.gene37289:intron 30.0%
CCAATTGAACACTCAAAATT+TGG - chr1.2:39700988-39701007 MS.gene37289:intron 30.0%
CGAAAATTTGATTGTGTTCT+TGG - chr1.2:39698820-39698839 MS.gene37289:intron 30.0%
GTCAAAAAGTTGTCAAAAAG+TGG - chr1.2:39699378-39699397 MS.gene37289:CDS 30.0%
TAATATCAAGTTTCATGGAG+CGG + chr1.2:39700207-39700226 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG + chr1.2:39699260-39699279 None:intergenic 30.0%
! TCTGCAAATGACTTTTAACA+TGG + chr1.2:39698915-39698934 None:intergenic 30.0%
! TGTGGTTCATATGATTTTCA+TGG - chr1.2:39698325-39698344 MS.gene37289:CDS 30.0%
! TTATCGAGGTGTTATAATCA+GGG - chr1.2:39700306-39700325 MS.gene37289:CDS 30.0%
!! ATTGAGGTTACCATTTTTGA+AGG - chr1.2:39701052-39701071 MS.gene37289:intron 30.0%
!! CCAAATTTTGAGTGTTCAAT+TGG + chr1.2:39700991-39701010 None:intergenic 30.0%
!! GTACTCATAATTTGTTATCG+AGG - chr1.2:39700292-39700311 MS.gene37289:intron 30.0%
!! TTGAGGTTACCATTTTTGAA+GGG - chr1.2:39701053-39701072 MS.gene37289:intron 30.0%
!!! TTTTTTATGTTTAGCGACAG+CGG + chr1.2:39700760-39700779 None:intergenic 30.0%
AACAGTTTCATAAGTGCTTG+TGG - chr1.2:39699575-39699594 MS.gene37289:intron 35.0%
ACAAGCACTTATGAAACTGT+TGG + chr1.2:39699576-39699595 None:intergenic 35.0%
ACATTTCCTGTTGACATAGT+TGG + chr1.2:39698391-39698410 None:intergenic 35.0%
AGAATGAGACCCTTCAAAAA+TGG + chr1.2:39701065-39701084 None:intergenic 35.0%
ATCAGCCTTAATATCGCTTT+CGG + chr1.2:39698868-39698887 None:intergenic 35.0%
CCATGTTTGGATTTGATTAG+AGG - chr1.2:39700335-39700354 MS.gene37289:CDS 35.0%
CCTCTAATCAAATCCAAACA+TGG + chr1.2:39700338-39700357 None:intergenic 35.0%
CTTATGAAACTGTTGGAGAT+TGG + chr1.2:39699569-39699588 None:intergenic 35.0%
TACTACTTGTCTTCTGTTGT+TGG + chr1.2:39700964-39700983 None:intergenic 35.0%
! AAACTGTTGGAGATTGGTTA+TGG + chr1.2:39699563-39699582 None:intergenic 35.0%
! AAATTACCTTGAGCTTGTTC+TGG + chr1.2:39698961-39698980 None:intergenic 35.0%
! CTCTACATGAGTTCTTTTCT+CGG + chr1.2:39699883-39699902 None:intergenic 35.0%
! GTTATCGAGGTGTTATAATC+AGG - chr1.2:39700305-39700324 MS.gene37289:CDS 35.0%
! TCGAATCTTTCGTGTTTTGT+AGG - chr1.2:39698297-39698316 MS.gene37289:CDS 35.0%
! TCTACATGAGTTCTTTTCTC+GGG + chr1.2:39699882-39699901 None:intergenic 35.0%
!! AAACTAATCTAAGGCACTGT+TGG - chr1.2:39699131-39699150 MS.gene37289:intron 35.0%
!! TAAATGCATCGGTTTACTTC+TGG - chr1.2:39698541-39698560 MS.gene37289:intron 35.0%
ACATAGAGCTTAGAACACAG+GGG - chr1.2:39699098-39699117 MS.gene37289:intron 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG - chr1.2:39699321-39699340 MS.gene37289:intron 40.0%
ATCAGGGACATATCCATGTT+TGG - chr1.2:39700322-39700341 MS.gene37289:CDS 40.0%
CAACACCGAAAGCGATATTA+AGG - chr1.2:39698860-39698879 MS.gene37289:intron 40.0%
CAACAGAAGACAAGTAGTAG+TGG - chr1.2:39700965-39700984 MS.gene37289:intron 40.0%
CAATTGCGAATAGAGGAACA+AGG - chr1.2:39700914-39700933 MS.gene37289:CDS 40.0%
CCGAGAGTAAGTAAATGCAT+CGG - chr1.2:39698530-39698549 MS.gene37289:intron 40.0%
CCGATGCATTTACTTACTCT+CGG + chr1.2:39698533-39698552 None:intergenic 40.0%
GAAAGCGATATTAAGGCTGA+TGG - chr1.2:39698867-39698886 MS.gene37289:intron 40.0%
GACATAGAGCTTAGAACACA+GGG - chr1.2:39699097-39699116 MS.gene37289:intron 40.0%
GCTCAAAACAACTTATGGAC+AGG - chr1.2:39699524-39699543 MS.gene37289:intron 40.0%
GGAAATGTCTCAACGAATTC+CGG - chr1.2:39698403-39698422 MS.gene37289:intron 40.0%
TAAGCGAGAAATGATTGCAC+CGG + chr1.2:39699973-39699992 None:intergenic 40.0%
TATATGCCAGAACAAGCTCA+AGG - chr1.2:39698952-39698971 MS.gene37289:intron 40.0%
TCAGTCAAATGTGACTGATG+TGG - chr1.2:39700717-39700736 MS.gene37289:intron 40.0%
TGACATAGAGCTTAGAACAC+AGG - chr1.2:39699096-39699115 MS.gene37289:intron 40.0%
! CGTGTTTTGTAGGTTTCTTG+TGG - chr1.2:39698307-39698326 MS.gene37289:CDS 40.0%
!! TTAAGGCTGATGGATTCAGA+TGG - chr1.2:39698877-39698896 MS.gene37289:intron 40.0%
AAATGTCTATGGATGCGGTC+TGG + chr1.2:39700799-39700818 None:intergenic 45.0%
ACCGAAGATCCATTACAAGC+AGG + chr1.2:39698433-39698452 None:intergenic 45.0%
AGACTACACTTCGCAACTAG+AGG + chr1.2:39700588-39700607 None:intergenic 45.0%
CCGAAGATCCATTACAAGCA+GGG + chr1.2:39698432-39698451 None:intergenic 45.0%
CTCTCTCCAACTATGTCAAC+AGG - chr1.2:39698382-39698401 MS.gene37289:intron 45.0%
GACTGATGTGGCCTCAATTA+TGG - chr1.2:39700729-39700748 MS.gene37289:intron 45.0%
GCGTCTTCATGAACAACTAG+AGG - chr1.2:39700084-39700103 MS.gene37289:intron 45.0%
TCCATTACAAGCAGGGTTTC+CGG + chr1.2:39698425-39698444 None:intergenic 45.0%
TCTTGGCTGCTTGATTGTAG+AGG - chr1.2:39698837-39698856 MS.gene37289:intron 45.0%
! CAGTGGCTTGCAAATTAGAG+AGG - chr1.2:39700033-39700052 MS.gene37289:intron 45.0%
!! CCCTGCTTGTAATGGATCTT+CGG - chr1.2:39698429-39698448 MS.gene37289:intron 45.0%
AGCTTAGAACACAGGGGATG+TGG - chr1.2:39699104-39699123 MS.gene37289:intron 50.0%
GTTGAGTGTGTGAATCGCCT+TGG - chr1.2:39698502-39698521 MS.gene37289:intron 50.0%
TCCGGAAACCCTGCTTGTAA+TGG - chr1.2:39698421-39698440 MS.gene37289:intron 50.0%
ACTTACTCTCGGCACCACCA+AGG + chr1.2:39698522-39698541 None:intergenic 55.0%
AGCTGCAGCTAGACGTTCAG+AGG - chr1.2:39700062-39700081 MS.gene37289:intron 55.0%
GAGTGTGTGAATCGCCTTGG+TGG - chr1.2:39698505-39698524 MS.gene37289:intron 55.0%
TATGTTTAGCGACAGCGGCG+TGG + chr1.2:39700755-39700774 None:intergenic 55.0%
CAGCGGCGTGGCCATAATTG+AGG + chr1.2:39700743-39700762 None:intergenic 60.0%
CGGTCTGGACTGCAACAGCG+AGG + chr1.2:39700784-39700803 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 39698177 39701096 39698177 ID=MS.gene37289
chr1.2 mRNA 39698177 39701096 39698177 ID=MS.gene37289.t1;Parent=MS.gene37289
chr1.2 exon 39701055 39701096 39701055 ID=MS.gene37289.t1.exon1;Parent=MS.gene37289.t1
chr1.2 CDS 39701055 39701096 39701055 ID=cds.MS.gene37289.t1;Parent=MS.gene37289.t1
chr1.2 exon 39700738 39700954 39700738 ID=MS.gene37289.t1.exon2;Parent=MS.gene37289.t1
chr1.2 CDS 39700738 39700954 39700738 ID=cds.MS.gene37289.t1;Parent=MS.gene37289.t1
chr1.2 exon 39700300 39700416 39700300 ID=MS.gene37289.t1.exon3;Parent=MS.gene37289.t1
chr1.2 CDS 39700300 39700416 39700300 ID=cds.MS.gene37289.t1;Parent=MS.gene37289.t1
chr1.2 exon 39699348 39699399 39699348 ID=MS.gene37289.t1.exon4;Parent=MS.gene37289.t1
chr1.2 CDS 39699348 39699399 39699348 ID=cds.MS.gene37289.t1;Parent=MS.gene37289.t1
chr1.2 exon 39699168 39699237 39699168 ID=MS.gene37289.t1.exon5;Parent=MS.gene37289.t1
chr1.2 CDS 39699168 39699237 39699168 ID=cds.MS.gene37289.t1;Parent=MS.gene37289.t1
chr1.2 exon 39698177 39698374 39698177 ID=MS.gene37289.t1.exon6;Parent=MS.gene37289.t1
chr1.2 CDS 39698177 39698374 39698177 ID=cds.MS.gene37289.t1;Parent=MS.gene37289.t1
Gene Sequence

>MS.gene37289

ATGAGTCCATTAATTCATTCTAATGGAAATCAAGATCATAAAGTAAGTATTGTTTTTATGCATACCTTATAATTTACTTTTATTGTTTCTATTTTCATTTATTGGTTCGCTTAAACTTTGTCGAATCTTTCGTGTTTTGTAGGTTTCTTGTGGTTCATATGATTTTCATGGTTCACAGCTGAATTTCTCTTATCAGCAAGATAAACTCTCTCCAACTATGTCAACAGGAAATGTCTCAACGAATTCCGGAAACCCTGCTTGTAATGGATCTTCGGTTTCAAGTAAAACACGAATAAGATGGACTCAAGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGTGGTGCCGAGAGTAAGTAAATGCATCGGTTTACTTCTGGCGTTTTCTGTTTCTATTTCTACCGATAAAATAAACAATCAAGAATACATCATGAAAGTTATTGAAAATGTATTTTAAAAATACAGTGAATATTTTTCTTTTTCTAAATTCTGAAAAATTTCAAAACATTGTTTTCAATGTTTCGAAAAATGCATTGACTTCCGTTATCTTTCATCTTCTCTTTGTGAAATTTAAAAAGAAAAATTTATAACTTAACAAAGTAAAAATTGTTAATGTTGTTAGAAAGTAAACAGATGCGAAAATTTGATTGTGTTCTTGGCTGCTTGATTGTAGAGGCAACACCGAAAGCGATATTAAGGCTGATGGATTCAGATGGATTGACAATTTTCCATGTTAAAAGTCATTTGCAGAAGTATAGAATTGCAAAATATATGCCAGAACAAGCTCAAGGTAATTTTGTTATCATACTCAGTGTTTTTTTTTTTTTTTATATATTTTTTTTATCTATAATGTAAAGTACATGGTGTATGAATTTAACAGGACTCATGTAATAAATTGTGTACAGAACATTATGACATAGAGCTTAGAACACAGGGGATGTGGTTATAAACTAATCTAAGGCACTGTTGGATAGACAATTTAATTAAGTGCTTATAGCATAAGTACTTATCATGTAACTGCTTAAATGTAAGTAACTTTATGAAAAAAGATAAGAGTAATGATATTTTGACATCCATTTGATGACAACTTTGTTGACAATCTTGTTTTTCTCACTTCTTATTGGTCAAAAACAATGGAGAGAGAAAAAGGAAGAGAGAGGATAACAACATCATGTGAGTATGAGAGATAAAGTTGTCAAAAAGTTGTCAAAAAGTGGTTGTCAAAATATCACTTCTCGATAAGATAAAATAAACTAGGACTGTTTTCAATAAACTATAAGTTGTTTCATAAGCTATCAAAACAAGTAAATAGTTTCATAAGTGCTATTATTAGAAAAAAAGCTCAAAACAACTTATGGACAGGTCATAAGCTGATTCCATAACCAATCTCCAACAGTTTCATAAGTGCTTGTGGCAGTAAATAGTTTGATTGTTGATCTACTTAAACTTAGATTGCTAAACCTGAAAAGTTGTAATAAAGAAGTTTTTACATTTATATCCTTTCATATGTTAGAAAAGTTGAATTATTAAATGATAAATAGAGGTTTACTTTCTATGTTACAAGAAAATTATCAACTTATTCACCAGTTAGTCTTAATCTTCACTTCAATGGATACTATTCACTCTAAAAACATCAATTTTACTTCCCTTACTGAATATAAATTCTAAACAAACTGTTAACATGTTTCAGGGAAACCCGAGAAAAGAACTCATGTAGAGAATGTGAATCTTGATGCCAAATCGTAATGCTACTTACTTATTTTTCCGATTGTTATGTTCTATAATTCCGGTGCAATCATTTCTCGCTTACTTTCATATTGTAACAAACTATGTTTCTTTTCATAATTTGCAGTGGCTTGCAAATTAGAGAGGCACTTCAGCTGCAGCTAGACGTTCAGAGGCGTCTTCATGAACAACTAGAGGTATATCTTTCAATTTCCTTTATACATTATTTTGTGACACTGCATAATTCATAGCTTATACTTAAGAACAACTAGAGCTTATACTTAAATTGCTGTCGCCGCTCCATGAAACTTGATATTACGATATTTGACTCTTCTAATACAAATAGTTAGTAAAGTGAGAAAATCAATGATCCGTATTTCAACGTACTCATAATTTGTTATCGAGGTGTTATAATCAGGGACATATCCATGTTTGGATTTGATTAGAGGCCATCTATGAAATTTAAAGTTCATTCAATAAATATGTACTCATCAAATTTCTTACAAAATATTTATAATTATGTATTTTAAATATTAGTTACATTATAAATTTATCAAAACATATAATGTCTCTTTTGCATGTTACCAAAATCATCTATAGTTGAATTTAGACTCAACTTTTCAGCAATTTTCTTTTCATTGTATTATAATAAACAATCACTCGGAAAAACATATTTCCTCTAGTTGCGAAGTGTAGTCTTTACTAATAAGAAAAAAAAATCAAAGGTTTTCCAGTCTAAGAAAATAAAAAACTTCGGATTCAATGAGTTTCTCACCTTAAAGAAACATATCCGATATTATGGAGAATTTCAGTCAAATGTGACTGATGTGGCCTCAATTATGGCCACGCCGCTGTCGCTAAACATAAAAAAACCTCGCTGTTGCAGTCCAGACCGCATCCATAGACATTTTTTTAAACTCCTGCTTAGTATTTGTATTTTCTTCGTTCTATTCTGAAATAAAATTTTCTTACATTAATTTCTGGTTGCAGATTCAGAGAAAATTACAATTGCGAATAGAGGAACAAGGAAAGCAGTTGAAGATGATGTTTGACCAACAACAGAAGACAAGTAGTAGTGGCCAATTGAACACTCAAAATTTGGACAATACAACAAACAATGATATACCAATTAGTCCTAAAGATATTGAGGTTACCATTTTTGAAGGGTCTCATTCTCAATGCTCATAA
Protein sequence

>MS.gene37289.t1

MSPLIHSNGNQDHKVSCGSYDFHGSQLNFSYQQDKLSPTMSTGNVSTNSGNPACNGSSVSSKTRIRWTQDLHEKFVECVNRLGGAEKATPKAILRLMDSDGLTIFHVKSHLQKYRIAKYMPEQAQGKPEKRTHVENVNLDAKSGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTSSSGQLNTQNLDNTTNNDIPISPKDIEVTIFEGSHSQCS