AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37291

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37291.t1 MTR_1g053800 90.909 176 8 1 1 168 145 320 9.27e-111 318
MS.gene37291.t1 MTR_7g093010 54.545 165 66 3 3 161 187 348 1.46e-44 150
MS.gene37291.t1 MTR_1g053835 51.852 135 64 1 21 155 254 387 3.74e-35 127
MS.gene37291.t1 MTR_7g093030 50.758 132 65 0 24 155 211 342 3.51e-34 124
MS.gene37291.t1 MTR_1g080330 45.588 136 73 1 21 155 171 306 1.89e-32 119
MS.gene37291.t1 MTR_7g098250 46.715 137 70 2 21 155 258 393 2.21e-32 120
MS.gene37291.t1 MTR_2g027860 47.445 137 63 2 25 155 49 182 1.70e-31 115
MS.gene37291.t1 MTR_7g088070 40.299 134 80 0 22 155 47 180 4.45e-29 108
MS.gene37291.t1 MTR_7g115530 43.939 132 73 1 25 155 218 349 3.01e-28 108
MS.gene37291.t1 MTR_7g088070 39.437 142 74 2 22 155 47 184 2.87e-27 103
MS.gene37291.t1 MTR_6g444980 39.474 152 80 2 20 163 30 177 1.26e-25 100
MS.gene37291.t1 MTR_6g444980 41.912 136 67 2 20 147 30 161 9.81e-25 98.2
MS.gene37291.t1 MTR_6g032990 37.580 157 73 3 20 155 37 189 2.24e-24 97.8
MS.gene37291.t1 MTR_2g086450 41.830 153 68 6 20 151 40 192 5.91e-24 96.7
MS.gene37291.t1 MTR_1g080330 42.857 112 63 1 21 131 171 282 2.16e-23 93.6
MS.gene37291.t1 MTR_5g027440 35.294 170 88 4 15 165 12 178 2.26e-22 90.9
MS.gene37291.t1 MTR_5g041350 38.356 146 77 3 18 150 8 153 6.83e-22 90.5
MS.gene37291.t1 MTR_4g081710 37.931 145 74 3 20 150 12 154 9.23e-22 90.1
MS.gene37291.t1 MTR_2g027800 35.616 146 82 3 8 149 25 162 5.35e-21 87.4
MS.gene37291.t1 MTR_7g068600 41.538 130 72 2 21 146 9 138 8.42e-21 85.9
MS.gene37291.t1 MTR_7g115530 42.202 109 62 1 25 132 218 326 1.79e-20 86.3
MS.gene37291.t1 MTR_2g027800 33.548 155 87 4 8 149 25 176 1.94e-19 83.6
MS.gene37291.t1 MTR_7g093030 51.220 82 40 0 25 106 212 293 4.42e-19 82.0
MS.gene37291.t1 MTR_7g115530 54.412 68 31 0 25 92 218 285 5.49e-19 82.8
MS.gene37291.t1 MTR_7g115530 54.412 68 31 0 25 92 218 285 1.16e-18 81.3
MS.gene37291.t1 MTR_1g090670 35.821 134 81 3 11 143 33 162 2.04e-18 80.5
MS.gene37291.t1 MTR_7g115530 63.462 52 19 0 25 76 218 269 2.02e-16 74.7
MS.gene37291.t1 MTR_7g115530 62.745 51 19 0 25 75 218 268 1.45e-15 72.8
MS.gene37291.t1 MTR_0223s0040 62.264 53 20 0 27 79 20 72 1.59e-15 72.4
MS.gene37291.t1 MTR_1g053830 51.515 66 32 0 27 92 20 85 1.69e-15 68.6
MS.gene37291.t1 MTR_8g086410 51.429 70 26 1 27 96 113 174 4.21e-15 72.0
MS.gene37291.t1 MTR_8g086410 51.429 70 26 1 27 96 111 172 4.36e-15 72.0
MS.gene37291.t1 MTR_1g112370 41.304 92 40 2 27 106 24 113 9.14e-15 70.9
MS.gene37291.t1 MTR_2g016220 62.264 53 20 0 27 79 91 143 9.40e-15 70.9
MS.gene37291.t1 MTR_2g016220 62.264 53 20 0 27 79 91 143 9.59e-15 70.9
MS.gene37291.t1 MTR_2g084230 51.429 70 26 1 27 96 99 160 2.35e-14 69.7
MS.gene37291.t1 MTR_2g023580 58.491 53 22 0 27 79 57 109 2.38e-14 68.6
MS.gene37291.t1 MTR_3g450310 60.377 53 21 0 27 79 21 73 2.79e-14 67.8
MS.gene37291.t1 MTR_2g084230 51.429 70 26 1 27 96 99 160 2.96e-14 69.3
MS.gene37291.t1 MTR_8g086410 47.143 70 36 1 27 96 113 181 3.97e-14 69.3
MS.gene37291.t1 MTR_7g069660 56.604 53 23 0 27 79 73 125 1.15e-13 67.8
MS.gene37291.t1 MTR_6g071625 47.059 68 34 1 27 94 204 269 1.48e-13 67.4
MS.gene37291.t1 MTR_1g021520 47.368 76 36 2 27 101 128 200 2.63e-13 66.2
MS.gene37291.t1 MTR_3g064840 38.532 109 51 3 27 135 276 368 4.48e-13 66.2
MS.gene37291.t1 MTR_8g066310 31.852 135 73 3 11 126 146 280 4.57e-13 66.2
MS.gene37291.t1 MTR_2g016220 57.895 57 20 1 27 79 91 147 9.30e-13 65.1
MS.gene37291.t1 MTR_5g029470 37.931 87 49 1 27 108 221 307 1.14e-12 65.1
MS.gene37291.t1 MTR_4g021790 50.820 61 29 1 21 81 164 223 1.85e-11 61.2
MS.gene37291.t1 MTR_4g021855 51.724 58 27 1 21 78 164 220 8.18e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37291.t1 AT5G06800 46.667 150 75 1 11 155 173 322 3.30e-34 124
MS.gene37291.t1 AT5G06800 45.806 155 74 2 11 155 173 327 3.77e-34 124
MS.gene37291.t1 AT2G01060 48.175 137 61 2 25 155 15 147 2.71e-31 114
MS.gene37291.t1 AT4G28610 45.926 135 71 1 22 154 222 356 4.40e-31 116
MS.gene37291.t1 AT5G29000 43.478 138 74 2 22 155 185 322 1.29e-29 111
MS.gene37291.t1 AT5G29000 43.478 138 74 2 22 155 185 322 1.29e-29 111
MS.gene37291.t1 AT5G29000 43.478 138 74 2 22 155 228 365 1.76e-29 112
MS.gene37291.t1 AT3G04450 41.176 136 76 1 24 155 197 332 2.43e-28 108
MS.gene37291.t1 AT3G04450 41.176 136 76 1 24 155 197 332 2.43e-28 108
MS.gene37291.t1 AT3G04450 41.176 136 76 1 24 155 237 372 3.70e-28 108
MS.gene37291.t1 AT4G13640 36.686 169 94 3 8 163 20 188 2.83e-25 98.6
MS.gene37291.t1 AT3G24120 37.278 169 93 2 8 163 24 192 2.92e-24 96.3
MS.gene37291.t1 AT3G13040 42.466 146 68 3 21 155 237 377 3.28e-24 97.8
MS.gene37291.t1 AT3G13040 42.466 146 68 3 21 155 237 377 3.28e-24 97.8
MS.gene37291.t1 AT3G13040 42.466 146 68 3 21 155 237 377 3.28e-24 97.8
MS.gene37291.t1 AT1G79430 39.735 151 79 2 20 162 29 175 3.34e-24 97.1
MS.gene37291.t1 AT5G18240 38.255 149 76 2 20 152 40 188 4.36e-24 97.1
MS.gene37291.t1 AT5G18240 38.255 149 76 2 20 152 40 188 4.36e-24 97.1
MS.gene37291.t1 AT3G04030 38.217 157 81 2 11 151 31 187 6.29e-24 96.7
MS.gene37291.t1 AT2G20400 41.667 132 75 1 25 154 231 362 1.88e-23 95.5
MS.gene37291.t1 AT4G13640 36.047 172 94 4 8 163 20 191 2.81e-23 93.6
MS.gene37291.t1 AT2G20400 42.424 132 73 2 25 154 231 361 6.09e-23 94.0
MS.gene37291.t1 AT3G24120 36.628 172 93 3 8 163 24 195 3.67e-22 90.5
MS.gene37291.t1 AT5G18240 37.584 149 75 3 20 152 40 186 1.57e-21 90.1
MS.gene37291.t1 AT3G04030 36.943 157 82 3 11 151 31 186 5.25e-21 88.6
MS.gene37291.t1 AT1G69580 36.913 149 76 2 20 150 29 177 1.01e-20 87.4
MS.gene37291.t1 AT3G12730 35.211 142 83 2 20 152 18 159 3.38e-20 84.3
MS.gene37291.t1 AT1G69580 35.065 154 73 2 20 150 29 178 7.06e-20 85.1
MS.gene37291.t1 AT5G45580 32.278 158 82 3 20 155 2 156 2.51e-19 82.4
MS.gene37291.t1 AT5G18240 34.899 149 75 3 20 152 40 182 2.76e-19 84.0
MS.gene37291.t1 AT5G18240 34.899 149 75 3 20 152 40 182 2.76e-19 84.0
MS.gene37291.t1 AT5G45580 32.278 158 82 3 20 155 18 172 3.46e-19 82.4
MS.gene37291.t1 AT3G04030 33.735 166 70 4 11 151 31 181 4.46e-19 83.2
MS.gene37291.t1 AT5G29000 59.322 59 24 0 22 80 228 286 4.88e-18 79.7
MS.gene37291.t1 AT3G04450 57.143 56 24 0 25 80 238 293 4.18e-17 77.0
MS.gene37291.t1 AT5G06800 63.636 55 20 0 24 78 191 245 4.20e-17 76.6
MS.gene37291.t1 AT2G42660 58.491 53 22 0 27 79 52 104 1.36e-15 72.4
MS.gene37291.t1 AT4G04605 61.538 52 20 0 27 78 16 67 3.69e-15 70.5
MS.gene37291.t1 AT2G40260 60.377 53 21 0 27 79 84 136 4.02e-15 72.0
MS.gene37291.t1 AT2G06020 46.269 67 33 1 12 78 76 139 4.60e-15 71.2
MS.gene37291.t1 AT4G04580 58.491 53 22 0 27 79 16 68 5.71e-15 68.9
MS.gene37291.t1 AT5G16560 41.111 90 53 0 27 116 221 310 1.06e-14 70.9
MS.gene37291.t1 AT1G14600 61.111 54 21 0 27 80 25 78 1.19e-14 69.7
MS.gene37291.t1 AT5G42630 47.887 71 32 2 27 96 107 173 1.34e-14 68.9
MS.gene37291.t1 AT5G42630 47.887 71 32 2 27 96 107 173 1.67e-14 69.7
MS.gene37291.t1 AT2G01060 45.098 102 46 2 60 155 1 98 4.80e-14 67.8
MS.gene37291.t1 AT1G32240 37.143 105 60 2 27 125 215 319 8.08e-14 68.6
MS.gene37291.t1 AT1G32240 37.143 105 60 2 27 125 215 319 9.44e-14 68.2
MS.gene37291.t1 AT2G02060 59.615 52 21 0 27 78 31 82 2.04e-13 66.2
MS.gene37291.t1 AT2G02060 59.615 52 21 0 27 78 31 82 2.04e-13 66.2
MS.gene37291.t1 AT2G38300 46.575 73 31 1 27 99 56 120 2.16e-13 67.0
MS.gene37291.t1 AT4G17695 50.000 70 32 2 19 85 155 224 3.55e-13 66.2
MS.gene37291.t1 AT4G04555 58.824 51 21 0 29 79 18 68 5.26e-13 62.4
MS.gene37291.t1 AT4G37180 44.156 77 38 1 23 94 208 284 3.73e-12 63.5
MS.gene37291.t1 AT4G37180 44.156 77 38 1 23 94 215 291 4.75e-12 63.2
MS.gene37291.t1 AT2G25180 48.000 75 35 2 22 96 192 262 6.45e-11 60.1

Find 24 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGATTCTTCTATTTGCATT+TGG 0.336254 1.2:+39674178 None:intergenic
TCATGTCAAAAGTCATTTGC+AGG 0.353917 1.2:-39675372 MS.gene37291:intron
ATTATATAAACTTACTTTCT+GGG 0.366001 1.2:+39675526 None:intergenic
ACAAAAGAAAAGAACCAAAC+AGG 0.442809 1.2:-39673790 MS.gene37291:CDS
ATCATTTGTAGTATAGCCTT+AGG 0.450838 1.2:+39675419 None:intergenic
TAAGGCTATACTACAAATGA+TGG 0.452684 1.2:-39675417 MS.gene37291:CDS
TACTTTCTGGGCCACCAAGC+TGG 0.476548 1.2:+39675538 None:intergenic
ATTATTATTGTCAACCAGCT+TGG 0.483051 1.2:-39675552 MS.gene37291:CDS
GATGCAGCGAAATTTGCAAC+TGG 0.519384 1.2:-39673856 MS.gene37291:CDS
ATTATTGTCAACCAGCTTGG+TGG 0.523219 1.2:-39675549 MS.gene37291:CDS
CACACGCACAAATGTTTGAA+AGG 0.526179 1.2:-39675081 MS.gene37291:intron
GAGGAAGGACAGATAACAGA+TGG 0.535680 1.2:-39674362 MS.gene37291:CDS
AGGGTAAAAGAAGATTAAGA+TGG 0.538823 1.2:-39675599 MS.gene37291:CDS
TTAATCAGAGGCAAAGCCTA+AGG 0.566249 1.2:-39675435 MS.gene37291:intron
GAGCAATCAACGACAATTCG+AGG 0.567446 1.2:-39674130 MS.gene37291:intron
AACTACAACTTGAGGTTGAG+AGG 0.574473 1.2:-39674152 MS.gene37291:CDS
GACAAACAATCTTCACCTTG+TGG 0.605075 1.2:-39675645 MS.gene37291:CDS
AAGGCTATACTACAAATGAT+GGG 0.610409 1.2:-39675416 MS.gene37291:CDS
CTGTGTTGCAGGAGTATCTG+AGG 0.610708 1.2:-39674381 MS.gene37291:intron
AGGAAGGACAGATAACAGAT+GGG 0.621828 1.2:-39674361 MS.gene37291:CDS
ATCACGACAACTACAACTTG+AGG 0.638258 1.2:-39674160 MS.gene37291:CDS
TATACTACAAATGATGGGTG+TGG 0.647886 1.2:-39675411 MS.gene37291:CDS
GTTGCAGGAGTATCTGAGGA+AGG 0.655805 1.2:-39674377 MS.gene37291:intron
ATCTTAAAATCAAAGCCACA+AGG 0.681713 1.2:+39675630 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATTAAAAATAGAGA+AGG - chr1.2:39674591-39674610 MS.gene37291:intron 10.0%
!! AAATATTTGACAAAAAAAAA+GGG + chr1.2:39674790-39674809 None:intergenic 10.0%
!! TAAATATTTGACAAAAAAAA+AGG + chr1.2:39674791-39674810 None:intergenic 10.0%
!!! ATATTTTATATCAAGAATTA+AGG - chr1.2:39675392-39675411 MS.gene37291:CDS 10.0%
!!! GTTTATATAATTCATTTTAT+AGG - chr1.2:39673913-39673932 MS.gene37291:intron 10.0%
!!! TTTTTTTTTATCAGTAAATA+TGG + chr1.2:39674940-39674959 None:intergenic 10.0%
!! AAAAAATAATGCATTTATTC+AGG + chr1.2:39674864-39674883 None:intergenic 15.0%
!! AAAAATAATGCATTTATTCA+GGG + chr1.2:39674863-39674882 None:intergenic 15.0%
!! AATTATATAAACTTACTTTC+TGG + chr1.2:39673905-39673924 None:intergenic 15.0%
!! ATTATATAAACTTACTTTCT+GGG + chr1.2:39673904-39673923 None:intergenic 15.0%
!! TAATAATTTATTAGCGATAT+GGG - chr1.2:39674247-39674266 MS.gene37291:intron 15.0%
!! TATAAGTAACAAAAATAAGA+AGG + chr1.2:39674720-39674739 None:intergenic 15.0%
!! TTAAGTATAATTATATGTGT+CGG + chr1.2:39674216-39674235 None:intergenic 15.0%
!! TTAATAATTTATTAGCGATA+TGG - chr1.2:39674246-39674265 MS.gene37291:intron 15.0%
!! TTGAAATTGAAAACTAAATT+TGG + chr1.2:39674446-39674465 None:intergenic 15.0%
!!! ATCTTAATCACATAATTTTA+AGG + chr1.2:39675138-39675157 None:intergenic 15.0%
!!! TAATTAATTATTTTGTCTTG+TGG - chr1.2:39675545-39675564 MS.gene37291:CDS 15.0%
!!! TTTTTTTGTCAAATATTTAG+TGG - chr1.2:39674792-39674811 MS.gene37291:intron 15.0%
!! AAGTAAAATATATAGAAGAG+TGG + chr1.2:39674749-39674768 None:intergenic 20.0%
!! AGTAAAATATATAGAAGAGT+GGG + chr1.2:39674748-39674767 None:intergenic 20.0%
!! ATTATTGACATCAAGAATTT+AGG - chr1.2:39675334-39675353 MS.gene37291:intron 20.0%
!! CTTTAATTGTTCATATTCAT+TGG - chr1.2:39675162-39675181 MS.gene37291:intron 20.0%
!! GAATTAAGGAAATATTATGT+TGG - chr1.2:39675406-39675425 MS.gene37291:CDS 20.0%
!! TAATAGTAGAATAATGAACA+AGG + chr1.2:39674394-39674413 None:intergenic 20.0%
!! TGAATATGAACAATTAAAGA+AGG + chr1.2:39675161-39675180 None:intergenic 20.0%
!!! ATGATAATGTATAAGATTCT+TGG + chr1.2:39674684-39674703 None:intergenic 20.0%
!!! TTTAATCATTGATTAATCAG+AGG - chr1.2:39673980-39673999 MS.gene37291:intron 20.0%
! AAATAAGAAGGTAAAAATCG+TGG + chr1.2:39674708-39674727 None:intergenic 25.0%
! CAACACAGGTAAATTAATAT+TGG + chr1.2:39675034-39675053 None:intergenic 25.0%
! GGTTAAAATGCATTTCATAA+AGG + chr1.2:39674425-39674444 None:intergenic 25.0%
! TAGCTTCTTCAAAAAGATTA+AGG - chr1.2:39675506-39675525 MS.gene37291:intron 25.0%
! TTATACTTTACCCTCAAAAT+AGG + chr1.2:39674123-39674142 None:intergenic 25.0%
!!! GATTTTAAGATAACTGCAAA+GGG - chr1.2:39673809-39673828 MS.gene37291:CDS 25.0%
!!! TGATTTTAAGATAACTGCAA+AGG - chr1.2:39673808-39673827 MS.gene37291:CDS 25.0%
AAGGCTATACTACAAATGAT+GGG - chr1.2:39674011-39674030 MS.gene37291:intron 30.0%
AATAATGCATTTATTCAGGG+TGG + chr1.2:39674860-39674879 None:intergenic 30.0%
AATATTATGTTGGCCGATAT+TGG - chr1.2:39675416-39675435 MS.gene37291:CDS 30.0%
ACAAAAGAAAAGAACCAAAC+AGG - chr1.2:39675637-39675656 MS.gene37291:CDS 30.0%
AGGGTAAAAGAAGATTAAGA+TGG - chr1.2:39673828-39673847 MS.gene37291:CDS 30.0%
ATAATGCATTTATTCAGGGT+GGG + chr1.2:39674859-39674878 None:intergenic 30.0%
ATCATTTGTAGTATAGCCTT+AGG + chr1.2:39674011-39674030 None:intergenic 30.0%
ATCTTAAAATCAAAGCCACA+AGG + chr1.2:39673800-39673819 None:intergenic 30.0%
ATTATTATTGTCAACCAGCT+TGG - chr1.2:39673875-39673894 MS.gene37291:intron 30.0%
CACAGGTAAATTAATATTGG+AGG + chr1.2:39675031-39675050 None:intergenic 30.0%
GATTAAATTAAGCACTAGCT+AGG + chr1.2:39673967-39673986 None:intergenic 30.0%
GTAATTCACTTTAATCTGTG+TGG - chr1.2:39674368-39674387 MS.gene37291:CDS 30.0%
GTGATTCTTCTATTTGCATT+TGG + chr1.2:39675252-39675271 None:intergenic 30.0%
TAAGGCTATACTACAAATGA+TGG - chr1.2:39674010-39674029 MS.gene37291:intron 30.0%
TAGAGAAGGAAAAATGTGAA+AGG - chr1.2:39674605-39674624 MS.gene37291:intron 30.0%
TATATTGAGTGAATTCAGTG+TGG + chr1.2:39674554-39674573 None:intergenic 30.0%
TATTAATTTACCTGTGTTGC+AGG - chr1.2:39675035-39675054 MS.gene37291:intron 30.0%
TCTCATGAGTATAGTTCAAT+TGG + chr1.2:39674912-39674931 None:intergenic 30.0%
! ATATGCATGTACCTATTTTG+AGG - chr1.2:39674109-39674128 MS.gene37291:intron 30.0%
! ATGACTTTTGACATGAGAAA+TGG + chr1.2:39674051-39674070 None:intergenic 30.0%
!! TATGCATGTACCTATTTTGA+GGG - chr1.2:39674110-39674129 MS.gene37291:intron 30.0%
AAAGGATGGAGTAGGAAATT+TGG + chr1.2:39675225-39675244 None:intergenic 35.0%
CTATTTGCATTTGGCTACAA+AGG + chr1.2:39675243-39675262 None:intergenic 35.0%
GAAGGAAAAATGTGAAAGGA+AGG - chr1.2:39674609-39674628 MS.gene37291:intron 35.0%
TAATGCATTTATTCAGGGTG+GGG + chr1.2:39674858-39674877 None:intergenic 35.0%
TATAAAGCACAAACACTCCT+CGG - chr1.2:39674138-39674157 MS.gene37291:CDS 35.0%
TCATGTCAAAAGTCATTTGC+AGG - chr1.2:39674055-39674074 MS.gene37291:intron 35.0%
! CCGATTTAAGACGAAAATGA+TGG - chr1.2:39675669-39675688 MS.gene37291:CDS 35.0%
! CTTGGTTCTTAATGTGTCTA+CGG + chr1.2:39674666-39674685 None:intergenic 35.0%
!! AAGGTTTGCTAAGTAGAGAA+GGG - chr1.2:39674628-39674647 MS.gene37291:intron 35.0%
!! TATACTACAAATGATGGGTG+TGG - chr1.2:39674016-39674035 MS.gene37291:intron 35.0%
AACTACAACTTGAGGTTGAG+AGG - chr1.2:39675275-39675294 MS.gene37291:intron 40.0%
AATGCATTTATTCAGGGTGG+GGG + chr1.2:39674857-39674876 None:intergenic 40.0%
AGGAAGGACAGATAACAGAT+GGG - chr1.2:39675066-39675085 MS.gene37291:intron 40.0%
ATCAACGACAATTCGAGGTA+CGG - chr1.2:39675302-39675321 MS.gene37291:intron 40.0%
ATCACGACAACTACAACTTG+AGG - chr1.2:39675267-39675286 MS.gene37291:intron 40.0%
ATTATTGTCAACCAGCTTGG+TGG - chr1.2:39673878-39673897 MS.gene37291:intron 40.0%
CACACGCACAAATGTTTGAA+AGG - chr1.2:39674346-39674365 MS.gene37291:CDS 40.0%
GACAAACAATCTTCACCTTG+TGG - chr1.2:39673782-39673801 MS.gene37291:CDS 40.0%
GATTAGACGTGTCCTGATAT+CGG - chr1.2:39674160-39674179 MS.gene37291:CDS 40.0%
TTAATCAGAGGCAAAGCCTA+AGG - chr1.2:39673992-39674011 MS.gene37291:intron 40.0%
TTGCATTTGGCTACAAAGGA+TGG + chr1.2:39675239-39675258 None:intergenic 40.0%
!! ATCGGTCATTTTCTCCTGTT+TGG + chr1.2:39675654-39675673 None:intergenic 40.0%
!! GAAGGTTTGCTAAGTAGAGA+AGG - chr1.2:39674627-39674646 MS.gene37291:intron 40.0%
CATTGAAACCTGAGACCTTG+AGG + chr1.2:39675466-39675485 None:intergenic 45.0%
GAGCAATCAACGACAATTCG+AGG - chr1.2:39675297-39675316 MS.gene37291:intron 45.0%
GAGGAAGGACAGATAACAGA+TGG - chr1.2:39675065-39675084 MS.gene37291:intron 45.0%
GATGCAGCGAAATTTGCAAC+TGG - chr1.2:39675571-39675590 MS.gene37291:CDS 45.0%
TTGGCTACAAAGGATGGAGT+AGG + chr1.2:39675233-39675252 None:intergenic 45.0%
! TATGTTGGCCGATATTGGCT+TGG - chr1.2:39675421-39675440 MS.gene37291:CDS 45.0%
!! TATATGTGTCGGTGTCGTGT+CGG + chr1.2:39674205-39674224 None:intergenic 45.0%
ATCAGGACACGTCTAATCCG+AGG + chr1.2:39674158-39674177 None:intergenic 50.0%
CCCAGGTTCCAAGCCAATAT+CGG + chr1.2:39675432-39675451 None:intergenic 50.0%
CTCAGATACTCCTGCAACAC+AGG + chr1.2:39675048-39675067 None:intergenic 50.0%
TACGACACGTGTCCGATATC+AGG + chr1.2:39674175-39674194 None:intergenic 50.0%
!! CCGATATTGGCTTGGAACCT+GGG - chr1.2:39675429-39675448 MS.gene37291:CDS 50.0%
!! CTGTGTTGCAGGAGTATCTG+AGG - chr1.2:39675046-39675065 MS.gene37291:intron 50.0%
!! GTTGCAGGAGTATCTGAGGA+AGG - chr1.2:39675050-39675069 MS.gene37291:intron 50.0%
CAGGGTGGGGGTTCAAACTT+TGG + chr1.2:39674845-39674864 None:intergenic 55.0%
GTGCTCATCCTCAAGGTCTC+AGG - chr1.2:39675455-39675474 MS.gene37291:intron 55.0%
TACTTTCTGGGCCACCAAGC+TGG + chr1.2:39673892-39673911 None:intergenic 55.0%
TTGAGGATGAGCACACTCCC+AGG + chr1.2:39675449-39675468 None:intergenic 55.0%
! TGGGAGTGTGCTCATCCTCA+AGG - chr1.2:39675448-39675467 MS.gene37291:intron 55.0%
!! GCCGATATTGGCTTGGAACC+TGG - chr1.2:39675428-39675447 MS.gene37291:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 39673761 39675688 39673761 ID=MS.gene37291
chr1.2 mRNA 39673761 39675688 39673761 ID=MS.gene37291.t1;Parent=MS.gene37291
chr1.2 exon 39675541 39675688 39675541 ID=MS.gene37291.t1.exon1;Parent=MS.gene37291.t1
chr1.2 CDS 39675541 39675688 39675541 ID=cds.MS.gene37291.t1;Parent=MS.gene37291.t1
chr1.2 exon 39675373 39675449 39675373 ID=MS.gene37291.t1.exon2;Parent=MS.gene37291.t1
chr1.2 CDS 39675373 39675449 39675373 ID=cds.MS.gene37291.t1;Parent=MS.gene37291.t1
chr1.2 exon 39675082 39675121 39675082 ID=MS.gene37291.t1.exon3;Parent=MS.gene37291.t1
chr1.2 CDS 39675082 39675121 39675082 ID=cds.MS.gene37291.t1;Parent=MS.gene37291.t1
chr1.2 exon 39674338 39674392 39674338 ID=MS.gene37291.t1.exon4;Parent=MS.gene37291.t1
chr1.2 CDS 39674338 39674392 39674338 ID=cds.MS.gene37291.t1;Parent=MS.gene37291.t1
chr1.2 exon 39674131 39674200 39674131 ID=MS.gene37291.t1.exon5;Parent=MS.gene37291.t1
chr1.2 CDS 39674131 39674200 39674131 ID=cds.MS.gene37291.t1;Parent=MS.gene37291.t1
chr1.2 exon 39673761 39673877 39673761 ID=MS.gene37291.t1.exon6;Parent=MS.gene37291.t1
chr1.2 CDS 39673761 39673877 39673761 ID=cds.MS.gene37291.t1;Parent=MS.gene37291.t1
Gene Sequence

>MS.gene37291

TGGGAATCATGTACAAAGCAAGACAAACAATCTTCACCTTGTGGCTTTGATTTTAAGATAACTGCAAAGGGTAAAAGAAGATTAAGATGGACAAAAGAATTGAATGAGTCATTTATTATTATTGTCAACCAGCTTGGTGGCCCAGAAAGTAAGTTTATATAATTCATTTTATAGGTAACAAAATAGTTTGAAATTGCATGTTACCTAGCTAGTGCTTAATTTAATCATTGATTAATCAGAGGCAAAGCCTAAGGCTATACTACAAATGATGGGTGTGGATGTGTTGACCATTTCTCATGTCAAAAGTCATTTGCAGGTCAGTTTATTTTCATGAGACAATTGTTATATATATGCATGTACCTATTTTGAGGGTAAAGTATAAAGCACAAACACTCCTCGGATTAGACGTGTCCTGATATCGGACACGTGTCGTATCTAACACCGACACGACACCGACACATATAATTATACTTAATTATGTGATTTTAATAATTTATTAGCGATATGGGCGTGTTACTGCAAACTACTAAGTTGCTTTCTAATATTTCTATTATAATTTTCATGCAGAAATATCGTTCTACATTACACACGCACAAATGTTTGAAAGGTAATTCACTTTAATCTGTGTGGCCTTGTTCATTATTCTACTATTAATAATAGTCCTTTATGAAATGCATTTTAACCAAATTTAGTTTTCAATTTCAATTCTGAGATTTGATTTTCAGTTGAGTTTCAATTATGAATTAAGTTTCTGTTTTTATTTTTGAGTTAAGTCACTCTATTTACTTCACCACACTGAATTCACTCAATATAAGAAAATATTGACAAAAAAAATAATTAAAAATAGAGAAGGAAAAATGTGAAAGGAAGGTTTGCTAAGTAGAGAAGGGAAAATTGAAATACCGTAGACACATTAAGAACCAAGAATCTTATACATTATCATTCCACGATTTTTACCTTCTTATTTTTGTTACTTATACTAATCCCACTCTTCTATATATTTTACTTTTGATATGTTAGTCATAACCCTTTTTTTTTGTCAAATATTTAGTGGTTAGAAATTCATGAATAAACGCAGAGTCCAAAGTTTGAACCCCCACCCTGAATAAATGCATTATTTTTTTGAGTAACAAAATGCATTGTTTTTACCAATTGAACTATACTCATGAGAACAAACCATATTTACTGATAAAAAAAAAAAACAAATTTTACTTATATAAATCATACACTTCTAGTAGTAAATTAAATCATTGTTCTATCATCTTAACCTCCAATATTAATTTACCTGTGTTGCAGGAGTATCTGAGGAAGGACAGATAACAGATGGGATTAATGAGCTTCAAGTTAAAATGTAACATCATTTAGCTATGATAACCTTAAAATTATGTGATTAAGATCCTTCTTTAATTGTTCATATTCATTGGCACTACAATGTCGATGCAAAATGTATAAATGTTTTTACCAAATTTCCTACTCCATCCTTTGTAGCCAAATGCAAATAGAAGAATCACGACAACTACAACTTGAGGTTGAGAGGAGCAATCAACGACAATTCGAGGTACGGAATACTGTAATTATTGACATCAAGAATTTAGGAAACATTATATATATGTTTTTAATTATTTTACATTATATTTTATATCAAGAATTAAGGAAATATTATGTTGGCCGATATTGGCTTGGAACCTGGGAGTGTGCTCATCCTCAAGGTCTCAGGTTTCAATGTCAATTTGAGTGAGCTATTTTAGCTTCTTCAAAAAGATTAAGGAAATATTATATGTTTTTAATTAATTATTTTGTCTTGTGGTCAGATGCAGCGAAATTTGCAACTGGTGATTGAACAGCAGAAGAAGCAGCTCAAGTTAATGTTAGATCAACAAAAGAAAAGAACCAAACAGGAGAAAATGACCGATTTAAGACGAAAATGA
Protein sequence

>MS.gene37291.t1

WESCTKQDKQSSPCGFDFKITAKGKRRLRWTKELNESFIIIVNQLGGPEKAKPKAILQMMGVDVLTISHVKSHLQKYRSTLHTHKCLKGVSEEGQITDGINELQVKIQMQIEESRQLQLEVERSNQRQFEMQRNLQLVIEQQKKQLKLMLDQQKKRTKQEKMTDLRRK