Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37344.t1 | XP_024636348.1 | 44.1 | 801 | 219 | 5 | 1 | 599 | 1 | 774 | 3.20E-167 | 598.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37344.t1 | Q5UBY2 | 23.5 | 481 | 269 | 12 | 1 | 387 | 1 | 476 | 7.9e-29 | 130.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37344.t1 | A0A2K3LFG0 | 67.2 | 470 | 115 | 5 | 167 | 603 | 68 | 531 | 5.4e-164 | 587.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene37344.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37344.t1 | MTR_6g051425 | 74.566 | 173 | 40 | 1 | 1 | 169 | 1 | 173 | 1.55e-87 | 275 |
| MS.gene37344.t1 | MTR_3g465760 | 77.143 | 70 | 12 | 1 | 40 | 105 | 1 | 70 | 1.85e-29 | 111 |
| MS.gene37344.t1 | MTR_2g039370 | 74.648 | 71 | 18 | 0 | 49 | 119 | 98 | 168 | 2.75e-28 | 115 |
| MS.gene37344.t1 | MTR_0402s0040 | 23.984 | 246 | 162 | 8 | 29 | 270 | 38 | 262 | 2.46e-15 | 79.3 |
| MS.gene37344.t1 | MTR_2g098920 | 30.476 | 105 | 68 | 2 | 18 | 120 | 81 | 182 | 9.75e-14 | 72.0 |
| MS.gene37344.t1 | MTR_1g013060 | 28.481 | 158 | 104 | 3 | 19 | 169 | 26 | 181 | 5.63e-13 | 69.3 |
| MS.gene37344.t1 | MTR_4g067290 | 30.357 | 112 | 75 | 2 | 14 | 124 | 53 | 162 | 1.85e-12 | 67.8 |
| MS.gene37344.t1 | MTR_4g067290 | 30.357 | 112 | 75 | 2 | 14 | 124 | 53 | 162 | 2.09e-12 | 67.8 |
| MS.gene37344.t1 | MTR_4g067290 | 30.357 | 112 | 75 | 2 | 14 | 124 | 113 | 222 | 3.01e-12 | 68.2 |
| MS.gene37344.t1 | MTR_4g067290 | 30.357 | 112 | 75 | 2 | 14 | 124 | 71 | 180 | 3.21e-12 | 67.4 |
| MS.gene37344.t1 | MTR_4g067290 | 30.357 | 112 | 75 | 2 | 14 | 124 | 73 | 182 | 3.33e-12 | 67.4 |
| MS.gene37344.t1 | MTR_4g067290 | 30.357 | 112 | 75 | 2 | 14 | 124 | 73 | 182 | 3.40e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37344.t1 | AT4G38180 | 30.622 | 209 | 143 | 2 | 177 | 385 | 408 | 614 | 6.02e-28 | 119 |
| MS.gene37344.t1 | AT4G38180 | 29.944 | 177 | 115 | 3 | 2 | 174 | 62 | 233 | 1.61e-17 | 87.0 |
| MS.gene37344.t1 | AT4G38170 | 27.488 | 211 | 149 | 3 | 177 | 386 | 173 | 380 | 1.60e-25 | 111 |
| MS.gene37344.t1 | AT2G27110 | 30.476 | 210 | 140 | 4 | 177 | 385 | 210 | 414 | 1.83e-25 | 112 |
| MS.gene37344.t1 | AT2G27110 | 30.476 | 210 | 140 | 4 | 177 | 385 | 355 | 559 | 2.55e-25 | 111 |
| MS.gene37344.t1 | AT2G27110 | 30.476 | 210 | 140 | 4 | 177 | 385 | 355 | 559 | 2.55e-25 | 111 |
| MS.gene37344.t1 | AT1G76320 | 28.436 | 211 | 146 | 3 | 177 | 387 | 321 | 526 | 1.48e-23 | 105 |
| MS.gene37344.t1 | AT1G76320 | 28.436 | 211 | 146 | 3 | 177 | 387 | 321 | 526 | 1.71e-23 | 105 |
| MS.gene37344.t1 | AT1G76320 | 28.436 | 211 | 146 | 3 | 177 | 387 | 321 | 526 | 1.93e-23 | 105 |
| MS.gene37344.t1 | AT1G76320 | 28.436 | 211 | 146 | 3 | 177 | 387 | 321 | 526 | 1.93e-23 | 105 |
| MS.gene37344.t1 | AT4G19990 | 28.085 | 235 | 164 | 4 | 154 | 387 | 254 | 484 | 3.59e-22 | 101 |
| MS.gene37344.t1 | AT4G19990 | 28.085 | 235 | 164 | 4 | 154 | 387 | 311 | 541 | 4.57e-22 | 101 |
| MS.gene37344.t1 | AT4G19990 | 28.085 | 235 | 164 | 4 | 154 | 387 | 311 | 541 | 4.57e-22 | 101 |
| MS.gene37344.t1 | AT4G19990 | 28.085 | 235 | 164 | 4 | 154 | 387 | 311 | 541 | 4.69e-22 | 101 |
| MS.gene37344.t1 | AT4G19990 | 28.085 | 235 | 164 | 4 | 154 | 387 | 325 | 555 | 5.14e-22 | 101 |
| MS.gene37344.t1 | AT4G19990 | 28.085 | 235 | 164 | 4 | 154 | 387 | 311 | 541 | 5.43e-22 | 101 |
| MS.gene37344.t1 | AT4G19990 | 28.085 | 235 | 164 | 4 | 154 | 387 | 311 | 541 | 5.43e-22 | 101 |
| MS.gene37344.t1 | AT4G15090 | 25.806 | 217 | 158 | 2 | 171 | 387 | 378 | 591 | 1.12e-18 | 90.9 |
| MS.gene37344.t1 | AT4G15090 | 25.806 | 217 | 158 | 2 | 171 | 387 | 378 | 591 | 1.12e-18 | 90.9 |
| MS.gene37344.t1 | AT4G15090 | 25.806 | 217 | 158 | 2 | 171 | 387 | 378 | 591 | 1.12e-18 | 90.9 |
| MS.gene37344.t1 | AT4G15090 | 25.806 | 217 | 158 | 2 | 171 | 387 | 378 | 591 | 1.12e-18 | 90.9 |
| MS.gene37344.t1 | AT4G15090 | 25.806 | 217 | 158 | 2 | 171 | 387 | 378 | 591 | 1.12e-18 | 90.9 |
| MS.gene37344.t1 | AT5G18960 | 26.809 | 235 | 145 | 5 | 166 | 390 | 496 | 713 | 2.05e-18 | 90.1 |
| MS.gene37344.t1 | AT5G18960 | 26.809 | 235 | 145 | 5 | 166 | 390 | 496 | 713 | 2.05e-18 | 90.1 |
| MS.gene37344.t1 | AT3G06250 | 25.738 | 237 | 145 | 6 | 166 | 390 | 472 | 689 | 2.75e-17 | 86.3 |
| MS.gene37344.t1 | AT3G06250 | 25.738 | 237 | 145 | 6 | 166 | 390 | 472 | 689 | 2.75e-17 | 86.3 |
| MS.gene37344.t1 | AT3G06250 | 25.738 | 237 | 145 | 6 | 166 | 390 | 472 | 689 | 2.75e-17 | 86.3 |
| MS.gene37344.t1 | AT1G52520 | 25.506 | 247 | 170 | 5 | 151 | 390 | 384 | 623 | 3.79e-17 | 85.9 |
| MS.gene37344.t1 | AT3G22170 | 25.000 | 220 | 157 | 4 | 166 | 382 | 381 | 595 | 3.07e-16 | 83.2 |
| MS.gene37344.t1 | AT3G22170 | 25.000 | 220 | 157 | 4 | 166 | 382 | 381 | 595 | 3.07e-16 | 83.2 |
| MS.gene37344.t1 | AT2G32250 | 25.118 | 211 | 151 | 3 | 174 | 382 | 284 | 489 | 4.78e-16 | 82.4 |
| MS.gene37344.t1 | AT2G32250 | 25.118 | 211 | 151 | 3 | 174 | 382 | 284 | 489 | 5.29e-16 | 82.0 |
| MS.gene37344.t1 | AT2G32250 | 24.766 | 214 | 154 | 3 | 171 | 382 | 322 | 530 | 5.45e-16 | 82.4 |
| MS.gene37344.t1 | AT2G32250 | 24.766 | 214 | 154 | 3 | 171 | 382 | 322 | 530 | 5.45e-16 | 82.4 |
| MS.gene37344.t1 | AT2G32250 | 24.766 | 214 | 154 | 3 | 171 | 382 | 322 | 530 | 5.45e-16 | 82.4 |
| MS.gene37344.t1 | AT2G32250 | 25.118 | 211 | 151 | 3 | 174 | 382 | 325 | 530 | 5.52e-16 | 82.0 |
| MS.gene37344.t1 | AT2G32250 | 24.766 | 214 | 154 | 3 | 171 | 382 | 322 | 530 | 5.99e-16 | 82.0 |
| MS.gene37344.t1 | AT2G32250 | 24.766 | 214 | 154 | 3 | 171 | 382 | 322 | 530 | 5.99e-16 | 82.0 |
| MS.gene37344.t1 | AT3G59470 | 34.286 | 105 | 64 | 2 | 18 | 120 | 71 | 172 | 5.47e-12 | 66.6 |
| MS.gene37344.t1 | AT3G59470 | 34.286 | 105 | 64 | 2 | 18 | 120 | 71 | 172 | 5.47e-12 | 66.6 |
| MS.gene37344.t1 | AT3G59470 | 34.286 | 105 | 64 | 2 | 18 | 120 | 83 | 184 | 6.77e-12 | 66.6 |
| MS.gene37344.t1 | AT1G10240 | 27.778 | 234 | 150 | 9 | 154 | 382 | 365 | 584 | 5.55e-11 | 66.2 |
| MS.gene37344.t1 | AT1G10240 | 27.778 | 234 | 150 | 9 | 154 | 382 | 365 | 584 | 5.55e-11 | 66.2 |
Find 84 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAAATATTTGGAGCTATT+TGG | 0.130199 | 8.4:+74930629 | MS.gene37344:CDS |
| TTTATTAGAATTTGAGAAAA+TGG | 0.183724 | 8.4:+74931478 | MS.gene37344:CDS |
| GTATAAAGGTTACAAATATT+TGG | 0.202805 | 8.4:+74930619 | MS.gene37344:CDS |
| ACAAATATTTGGAGCTATTT+GGG | 0.211764 | 8.4:+74930630 | MS.gene37344:CDS |
| ATTCTGTTAATTCCTCAAAT+TGG | 0.245595 | 8.4:+74932601 | MS.gene37344:CDS |
| TCAACAACATGCCTTCAAAA+TGG | 0.254016 | 8.4:+74930275 | MS.gene37344:CDS |
| TCATACGCCACTTCCCTTTC+CGG | 0.255369 | 8.4:-74930402 | None:intergenic |
| AACTTAAATCTAAATTCTTT+TGG | 0.257029 | 8.4:-74932835 | None:intergenic |
| TTGACCAACAAATATATCTT+TGG | 0.275301 | 8.4:-74930217 | None:intergenic |
| TGTCATAAGTTTGATTCTTT+AGG | 0.276142 | 8.4:+74931788 | MS.gene37344:CDS |
| ATTGTTCTTAAACCCTTGTT+TGG | 0.324595 | 8.4:-74930376 | None:intergenic |
| GAGAGTACAAATAGTGTATT+AGG | 0.329101 | 8.4:+74931419 | MS.gene37344:CDS |
| TATGGTGAATTCTGGTATAA+AGG | 0.335301 | 8.4:+74930605 | MS.gene37344:CDS |
| AGGTGGTCTTATAAAATCTA+TGG | 0.343739 | 8.4:+74930587 | MS.gene37344:CDS |
| ATAAAATCTATGGTGAATTC+TGG | 0.357961 | 8.4:+74930597 | MS.gene37344:CDS |
| ATGTAAGCAAAGATGGAGTA+TGG | 0.368773 | 8.4:+74930469 | MS.gene37344:CDS |
| TTGTGCTACTAATTCTTCAA+TGG | 0.370084 | 8.4:+74932409 | MS.gene37344:CDS |
| CTATCTTGAAGAATGTTACT+TGG | 0.379881 | 8.4:-74932804 | None:intergenic |
| GATAAATGAGTACAAGCTTC+AGG | 0.382563 | 8.4:+74931295 | MS.gene37344:CDS |
| TTAGCATCAGTGAAACAAAA+AGG | 0.388778 | 8.4:+74932377 | MS.gene37344:intron |
| AGAGCCTTTGTCCATGCAAT+TGG | 0.396932 | 8.4:-74932450 | None:intergenic |
| TAGATCGCAGCAAATGTCTT+TGG | 0.402988 | 8.4:-74930542 | None:intergenic |
| AGCTTGTTCCAAAGTCTTGC+TGG | 0.403603 | 8.4:-74931576 | None:intergenic |
| TCAACAAACTTTGAAACTTA+CGG | 0.408514 | 8.4:-74931214 | None:intergenic |
| GTAGGTGGATTTGATAATCT+TGG | 0.413208 | 8.4:+74930660 | MS.gene37344:CDS |
| CAACAACATGCCTTCAAAAT+GGG | 0.420203 | 8.4:+74930276 | MS.gene37344:CDS |
| TGGGAAAATTGTTGATGAAA+AGG | 0.422125 | 8.4:+74932147 | MS.gene37344:CDS |
| GGTAAAGAAGTGGCGGCAAT+TGG | 0.427481 | 8.4:+74931499 | MS.gene37344:CDS |
| TATAAACACCAGCAAGACTT+TGG | 0.430072 | 8.4:+74931568 | MS.gene37344:CDS |
| TGTACAAAATTCGTCACAAA+TGG | 0.433626 | 8.4:+74931339 | MS.gene37344:CDS |
| TGTGCTACTAATTCTTCAAT+GGG | 0.439423 | 8.4:+74932410 | MS.gene37344:CDS |
| TTCTAATGTTTCCAATTGCA+TGG | 0.443676 | 8.4:+74932439 | MS.gene37344:CDS |
| CAATTCAATGTAAGCAAAGA+TGG | 0.453054 | 8.4:+74930462 | MS.gene37344:CDS |
| CGCAGCAAATGTCTTTGGTC+TGG | 0.453204 | 8.4:-74930537 | None:intergenic |
| CTACAAGGAATGAGTTCATA+TGG | 0.461551 | 8.4:+74932660 | MS.gene37344:CDS |
| GAGTCCAAAGATATATTTGT+TGG | 0.461723 | 8.4:+74930213 | MS.gene37344:CDS |
| ATGCAATTGGAAACATTAGA+AGG | 0.477669 | 8.4:-74932437 | None:intergenic |
| AGTATGGAAAATTACAAAGT+TGG | 0.484176 | 8.4:+74930485 | MS.gene37344:CDS |
| AAGAAGAATTTGAAAACACT+TGG | 0.490715 | 8.4:+74931264 | MS.gene37344:CDS |
| GCTACGATATACTTCTTATG+AGG | 0.492294 | 8.4:-74931731 | None:intergenic |
| ATTCAAATGCAATGACCAAT+GGG | 0.493585 | 8.4:+74932128 | MS.gene37344:CDS |
| TGAGTTAAAACTCCAATTTG+AGG | 0.504719 | 8.4:-74932613 | None:intergenic |
| CTCAACAGATTATGTGGAAG+TGG | 0.505410 | 8.4:+74932053 | MS.gene37344:CDS |
| GATTCAAATGCAATGACCAA+TGG | 0.508753 | 8.4:+74932127 | MS.gene37344:CDS |
| AAGAAGCTCAACAGATTATG+TGG | 0.515069 | 8.4:+74932047 | MS.gene37344:CDS |
| TTGCGAATTTACAACATCAA+AGG | 0.519182 | 8.4:+74931830 | MS.gene37344:CDS |
| CCTTGTAGCATACTAGTGAA+TGG | 0.519313 | 8.4:-74932645 | None:intergenic |
| TCTTGAAGAATGTTACTTGG+AGG | 0.523121 | 8.4:-74932801 | None:intergenic |
| TTCATATGGTCATTTAAGCC+AGG | 0.526410 | 8.4:+74932674 | MS.gene37344:CDS |
| ACACAGTTGAATCTCTATAG+AGG | 0.530861 | 8.4:-74931669 | None:intergenic |
| ATGTGGAAGTGGCTTGATGT+TGG | 0.533265 | 8.4:+74932064 | MS.gene37344:CDS |
| TTGTTGAATCAATGCATGTC+AGG | 0.538960 | 8.4:+74931230 | MS.gene37344:CDS |
| CAATGATCCGGAAAGGGAAG+TGG | 0.539057 | 8.4:+74930395 | MS.gene37344:CDS |
| TAAGAACAATGATCCGGAAA+GGG | 0.539665 | 8.4:+74930389 | MS.gene37344:CDS |
| AGGGTTTAAGAACAATGATC+CGG | 0.540376 | 8.4:+74930383 | MS.gene37344:CDS |
| CAAATATTTGGAGCTATTTG+GGG | 0.544736 | 8.4:+74930631 | MS.gene37344:CDS |
| GGTCTGGTGGTGCAAAGTCA+TGG | 0.553579 | 8.4:-74930521 | None:intergenic |
| CCATTCACTAGTATGCTACA+AGG | 0.564851 | 8.4:+74932645 | MS.gene37344:CDS |
| AATGAATATCTTGAGGGTGC+TGG | 0.569300 | 8.4:+74931638 | MS.gene37344:CDS |
| GAAAATTGTTGATGAAAAGG+AGG | 0.573659 | 8.4:+74932150 | MS.gene37344:CDS |
| CATGTTGACTATCCAAAACA+AGG | 0.575687 | 8.4:-74932021 | None:intergenic |
| GAATATCTTGAGGGTGCTGG+TGG | 0.580714 | 8.4:+74931641 | MS.gene37344:CDS |
| GTTATAAAATGACTTCATGA+TGG | 0.580882 | 8.4:-74931999 | None:intergenic |
| AAGAACAGACTGCAAGGCGA+TGG | 0.582821 | 8.4:+74930437 | MS.gene37344:CDS |
| AGGGATCTAGCAACTACCAT+TGG | 0.582917 | 8.4:+74932775 | MS.gene37344:intron |
| AGCAAATGTCTTTGGTCTGG+TGG | 0.583572 | 8.4:-74930534 | None:intergenic |
| TTGAGAAAATGGTAAAGAAG+TGG | 0.587634 | 8.4:+74931489 | MS.gene37344:CDS |
| AGAAGAATTTGAAAACACTT+GGG | 0.589432 | 8.4:+74931265 | MS.gene37344:CDS |
| TTAAGAACAATGATCCGGAA+AGG | 0.594668 | 8.4:+74930388 | MS.gene37344:CDS |
| GTTTCCAATTGCATGGACAA+AGG | 0.602350 | 8.4:+74932446 | MS.gene37344:CDS |
| ACAAGCTTCAGGATCATAAG+TGG | 0.603659 | 8.4:+74931306 | MS.gene37344:CDS |
| TTGCTGGTGTTTATAACGCG+CGG | 0.625953 | 8.4:-74931560 | None:intergenic |
| GTGCTACTAATTCTTCAATG+GGG | 0.626637 | 8.4:+74932411 | MS.gene37344:CDS |
| TGATTCAAGAACAGACTGCA+AGG | 0.633611 | 8.4:+74930431 | MS.gene37344:CDS |
| GCGGCAATTGGAGAGTGAGA+AGG | 0.636149 | 8.4:+74931511 | MS.gene37344:CDS |
| GTACAACAACGCATCTACCT+CGG | 0.639434 | 8.4:+74931453 | MS.gene37344:CDS |
| AGAAAAGTCACTTTGAGACA+AGG | 0.642504 | 8.4:+74932239 | MS.gene37344:CDS |
| AGAAAATGGTAAAGAAGTGG+CGG | 0.645176 | 8.4:+74931492 | MS.gene37344:CDS |
| TGTTACTTGGAGGTAACCAA+TGG | 0.649777 | 8.4:-74932791 | None:intergenic |
| AGAAATGTATCACAAGCCAA+AGG | 0.650055 | 8.4:+74930567 | MS.gene37344:CDS |
| AATGTATCACAAGCCAAAGG+TGG | 0.657940 | 8.4:+74930570 | MS.gene37344:CDS |
| AAATATTTGGAGCTATTTGG+GGG | 0.663067 | 8.4:+74930632 | MS.gene37344:CDS |
| TGAAATGTCTAATAGTGATG+AGG | 0.668790 | 8.4:+74931955 | MS.gene37344:CDS |
| CTGGTGTTTATAACGCGCGG+AGG | 0.712128 | 8.4:-74931557 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATAACTTATTAAGAA+TGG | - | chr8.4:74932530-74932549 | None:intergenic | 10.0% |
| !! | TCAAATCATATTTATTTGTT+CGG | - | chr8.4:74930923-74930942 | None:intergenic | 15.0% |
| !! | TTTATTAGAATTTGAGAAAA+TGG | + | chr8.4:74931478-74931497 | MS.gene37344:CDS | 15.0% |
| !! | AAAACAATCATAATCAACTT+TGG | - | chr8.4:74930871-74930890 | None:intergenic | 20.0% |
| !! | GTATAAAGGTTACAAATATT+TGG | + | chr8.4:74930619-74930638 | MS.gene37344:CDS | 20.0% |
| !!! | AAAGTTGATTATGATTGTTT+TGG | + | chr8.4:74930870-74930889 | MS.gene37344:intron | 20.0% |
| !!! | ATTTTTATTGTTCCAAACAA+GGG | + | chr8.4:74930364-74930383 | MS.gene37344:CDS | 20.0% |
| !!! | TATTTTTATTGTTCCAAACA+AGG | + | chr8.4:74930363-74930382 | MS.gene37344:CDS | 20.0% |
| ! | AAGAAGAATTTGAAAACACT+TGG | + | chr8.4:74931264-74931283 | MS.gene37344:CDS | 25.0% |
| ! | AAGTCAAAATTAATTGAAGC+AGG | + | chr8.4:74930723-74930742 | MS.gene37344:intron | 25.0% |
| ! | AGAAGAATTTGAAAACACTT+GGG | + | chr8.4:74931265-74931284 | MS.gene37344:CDS | 25.0% |
| ! | AGTATGGAAAATTACAAAGT+TGG | + | chr8.4:74930485-74930504 | MS.gene37344:CDS | 25.0% |
| ! | AGTCAAAATTAATTGAAGCA+GGG | + | chr8.4:74930724-74930743 | MS.gene37344:intron | 25.0% |
| ! | ATAAAATCTATGGTGAATTC+TGG | + | chr8.4:74930597-74930616 | MS.gene37344:CDS | 25.0% |
| ! | ATATTGATCATTTGTATACC+TGG | - | chr8.4:74932695-74932714 | None:intergenic | 25.0% |
| ! | ATATTTATTTGTTCGGTAAG+TGG | - | chr8.4:74930916-74930935 | None:intergenic | 25.0% |
| ! | ATTCTGTTAATTCCTCAAAT+TGG | + | chr8.4:74932601-74932620 | MS.gene37344:CDS | 25.0% |
| ! | CACTTTAAACAACCAATTAA+AGG | - | chr8.4:74931030-74931049 | None:intergenic | 25.0% |
| ! | GTTATAAAATGACTTCATGA+TGG | - | chr8.4:74932002-74932021 | None:intergenic | 25.0% |
| ! | TAAGTTATTCACCAAAGATT+GGG | - | chr8.4:74930754-74930773 | None:intergenic | 25.0% |
| ! | TCAAATTCTAATAAAAACCG+AGG | - | chr8.4:74931473-74931492 | None:intergenic | 25.0% |
| ! | TGTCATAAGTTTGATTCTTT+AGG | + | chr8.4:74931788-74931807 | MS.gene37344:CDS | 25.0% |
| ! | TTGACCAACAAATATATCTT+TGG | - | chr8.4:74930220-74930239 | None:intergenic | 25.0% |
| !! | AAATCACTTCTTTTTATTGC+AGG | + | chr8.4:74932755-74932774 | MS.gene37344:intron | 25.0% |
| !! | AATCACTTCTTTTTATTGCA+GGG | + | chr8.4:74932756-74932775 | MS.gene37344:intron | 25.0% |
| !! | ACAAATATTTGGAGCTATTT+GGG | + | chr8.4:74930630-74930649 | MS.gene37344:CDS | 25.0% |
| !! | TACAAATATTTGGAGCTATT+TGG | + | chr8.4:74930629-74930648 | MS.gene37344:CDS | 25.0% |
| !! | TGATCTGTAAAGATTGTTTT+TGG | - | chr8.4:74931080-74931099 | None:intergenic | 25.0% |
| !! | TTTTCGAATGAATATCTTGA+GGG | + | chr8.4:74931632-74931651 | MS.gene37344:CDS | 25.0% |
| !!! | ATCAATACTTTTTGAAACGA+TGG | + | chr8.4:74931870-74931889 | MS.gene37344:intron | 25.0% |
| !!! | CATAATCGATGATTTGTTTT+TGG | - | chr8.4:74931140-74931159 | None:intergenic | 25.0% |
| !!! | GTCATTTTATAACCTTGTTT+TGG | + | chr8.4:74932009-74932028 | MS.gene37344:CDS | 25.0% |
| !!! | GTTGTTTTATATCCTTTGAT+AGG | + | chr8.4:74932572-74932591 | MS.gene37344:intron | 25.0% |
| !!! | TCAACAAACTTTGAAACTTA+CGG | - | chr8.4:74931217-74931236 | None:intergenic | 25.0% |
| AAAAATGCTCCTTCTCATTT+AGG | + | chr8.4:74931176-74931195 | MS.gene37344:intron | 30.0% | |
| AATCCTCAACTTCCTTTAAT+TGG | + | chr8.4:74931015-74931034 | MS.gene37344:intron | 30.0% | |
| AGTCAAGCAAAATAAATGTG+AGG | + | chr8.4:74932279-74932298 | MS.gene37344:intron | 30.0% | |
| ATGCAATTGGAAACATTAGA+AGG | - | chr8.4:74932440-74932459 | None:intergenic | 30.0% | |
| ATTCAAATGCAATGACCAAT+GGG | + | chr8.4:74932128-74932147 | MS.gene37344:CDS | 30.0% | |
| ATTGTTCTTAAACCCTTGTT+TGG | - | chr8.4:74930379-74930398 | None:intergenic | 30.0% | |
| ATTTATGAGCATACTTGTGA+AGG | + | chr8.4:74931914-74931933 | MS.gene37344:intron | 30.0% | |
| CAATTCAATGTAAGCAAAGA+TGG | + | chr8.4:74930462-74930481 | MS.gene37344:CDS | 30.0% | |
| CAGAATGATATTCCTATCAA+AGG | - | chr8.4:74932587-74932606 | None:intergenic | 30.0% | |
| CTATCTTGAAGAATGTTACT+TGG | - | chr8.4:74932807-74932826 | None:intergenic | 30.0% | |
| GAGTCCAAAGATATATTTGT+TGG | + | chr8.4:74930213-74930232 | MS.gene37344:CDS | 30.0% | |
| GTAAGTTATTCACCAAAGAT+TGG | - | chr8.4:74930755-74930774 | None:intergenic | 30.0% | |
| GTCAAAATTAATTGAAGCAG+GGG | + | chr8.4:74930725-74930744 | MS.gene37344:intron | 30.0% | |
| TATGGTGAATTCTGGTATAA+AGG | + | chr8.4:74930605-74930624 | MS.gene37344:CDS | 30.0% | |
| TGAAATGTCTAATAGTGATG+AGG | + | chr8.4:74931955-74931974 | MS.gene37344:CDS | 30.0% | |
| TGAGTTAAAACTCCAATTTG+AGG | - | chr8.4:74932616-74932635 | None:intergenic | 30.0% | |
| TGTACAAAATTCGTCACAAA+TGG | + | chr8.4:74931339-74931358 | MS.gene37344:CDS | 30.0% | |
| TTAGCATCAGTGAAACAAAA+AGG | + | chr8.4:74932377-74932396 | MS.gene37344:intron | 30.0% | |
| TTCTAATGTTTCCAATTGCA+TGG | + | chr8.4:74932439-74932458 | MS.gene37344:CDS | 30.0% | |
| TTGAGAAAATGGTAAAGAAG+TGG | + | chr8.4:74931489-74931508 | MS.gene37344:CDS | 30.0% | |
| TTGCGAATTTACAACATCAA+AGG | + | chr8.4:74931830-74931849 | MS.gene37344:CDS | 30.0% | |
| TTTAGATCACCTAAATGAGA+AGG | - | chr8.4:74931188-74931207 | None:intergenic | 30.0% | |
| ! | AAATATTTGGAGCTATTTGG+GGG | + | chr8.4:74930632-74930651 | MS.gene37344:CDS | 30.0% |
| ! | AGATTTTATAAGACCACCTT+TGG | - | chr8.4:74930586-74930605 | None:intergenic | 30.0% |
| ! | CAAATATTTGGAGCTATTTG+GGG | + | chr8.4:74930631-74930650 | MS.gene37344:CDS | 30.0% |
| ! | CAAATCATCGATTATGTTTG+TGG | + | chr8.4:74931144-74931163 | MS.gene37344:intron | 30.0% |
| ! | CTTTTCGAATGAATATCTTG+AGG | + | chr8.4:74931631-74931650 | MS.gene37344:CDS | 30.0% |
| ! | GAAAATTGTTGATGAAAAGG+AGG | + | chr8.4:74932150-74932169 | MS.gene37344:CDS | 30.0% |
| ! | GAGAGTACAAATAGTGTATT+AGG | + | chr8.4:74931419-74931438 | MS.gene37344:CDS | 30.0% |
| ! | TGGGAAAATTGTTGATGAAA+AGG | + | chr8.4:74932147-74932166 | MS.gene37344:CDS | 30.0% |
| ! | TGTGCTACTAATTCTTCAAT+GGG | + | chr8.4:74932410-74932429 | MS.gene37344:CDS | 30.0% |
| ! | TTCATCAACAATTTTCCCAT+TGG | - | chr8.4:74932146-74932165 | None:intergenic | 30.0% |
| ! | TTGGTTGTTTAAAGTGTTTC+TGG | + | chr8.4:74931034-74931053 | MS.gene37344:intron | 30.0% |
| ! | TTGTGCTACTAATTCTTCAA+TGG | + | chr8.4:74932409-74932428 | MS.gene37344:CDS | 30.0% |
| !! | AGGTGGTCTTATAAAATCTA+TGG | + | chr8.4:74930587-74930606 | MS.gene37344:CDS | 30.0% |
| !! | CGTTTCAAAAAGTATTGATC+AGG | - | chr8.4:74931869-74931888 | None:intergenic | 30.0% |
| !!! | ATTCCTTTTGTTTTTGCTTG+AGG | - | chr8.4:74932205-74932224 | None:intergenic | 30.0% |
| AAGAAGCTCAACAGATTATG+TGG | + | chr8.4:74932047-74932066 | MS.gene37344:CDS | 35.0% | |
| ACACAGTTGAATCTCTATAG+AGG | - | chr8.4:74931672-74931691 | None:intergenic | 35.0% | |
| AGAAAATGGTAAAGAAGTGG+CGG | + | chr8.4:74931492-74931511 | MS.gene37344:CDS | 35.0% | |
| AGAAATGTATCACAAGCCAA+AGG | + | chr8.4:74930567-74930586 | MS.gene37344:CDS | 35.0% | |
| AGGGTTTAAGAACAATGATC+CGG | + | chr8.4:74930383-74930402 | MS.gene37344:CDS | 35.0% | |
| ATGATGATTCACACCAACAA+AGG | - | chr8.4:74930955-74930974 | None:intergenic | 35.0% | |
| ATGTAAGCAAAGATGGAGTA+TGG | + | chr8.4:74930469-74930488 | MS.gene37344:CDS | 35.0% | |
| CAACAACATGCCTTCAAAAT+GGG | + | chr8.4:74930276-74930295 | MS.gene37344:CDS | 35.0% | |
| CAACCAATTAAAGGAAGTTG+AGG | - | chr8.4:74931021-74931040 | None:intergenic | 35.0% | |
| CATTGGCAAAATGTCATGTT+TGG | + | chr8.4:74930972-74930991 | MS.gene37344:intron | 35.0% | |
| CCAAAAATAGAAACCTGAGA+TGG | - | chr8.4:74932503-74932522 | None:intergenic | 35.0% | |
| CTACAAGGAATGAGTTCATA+TGG | + | chr8.4:74932660-74932679 | MS.gene37344:CDS | 35.0% | |
| GATAAATGAGTACAAGCTTC+AGG | + | chr8.4:74931295-74931314 | MS.gene37344:CDS | 35.0% | |
| GATTCAAATGCAATGACCAA+TGG | + | chr8.4:74932127-74932146 | MS.gene37344:CDS | 35.0% | |
| GCTACGATATACTTCTTATG+AGG | - | chr8.4:74931734-74931753 | None:intergenic | 35.0% | |
| TAAGAACAATGATCCGGAAA+GGG | + | chr8.4:74930389-74930408 | MS.gene37344:CDS | 35.0% | |
| TATAAACACCAGCAAGACTT+TGG | + | chr8.4:74931568-74931587 | MS.gene37344:CDS | 35.0% | |
| TCAACAACATGCCTTCAAAA+TGG | + | chr8.4:74930275-74930294 | MS.gene37344:CDS | 35.0% | |
| TGATGATTCACACCAACAAA+GGG | - | chr8.4:74930954-74930973 | None:intergenic | 35.0% | |
| TTAAGAACAATGATCCGGAA+AGG | + | chr8.4:74930388-74930407 | MS.gene37344:CDS | 35.0% | |
| TTCATATGGTCATTTAAGCC+AGG | + | chr8.4:74932674-74932693 | MS.gene37344:CDS | 35.0% | |
| TTGCACACTATAGTAGAACA+TGG | - | chr8.4:74930799-74930818 | None:intergenic | 35.0% | |
| TTGTTGAATCAATGCATGTC+AGG | + | chr8.4:74931230-74931249 | MS.gene37344:CDS | 35.0% | |
| TTGTTGGTGTGAATCATCAT+TGG | + | chr8.4:74930955-74930974 | MS.gene37344:intron | 35.0% | |
| ! | CACACTAAAACCCATTTTGA+AGG | - | chr8.4:74930289-74930308 | None:intergenic | 35.0% |
| ! | CATGTTGACTATCCAAAACA+AGG | - | chr8.4:74932024-74932043 | None:intergenic | 35.0% |
| ! | CCATCTCAGGTTTCTATTTT+TGG | + | chr8.4:74932500-74932519 | MS.gene37344:intron | 35.0% |
| ! | GTAGGTGGATTTGATAATCT+TGG | + | chr8.4:74930660-74930679 | MS.gene37344:CDS | 35.0% |
| ! | GTGCTACTAATTCTTCAATG+GGG | + | chr8.4:74932411-74932430 | MS.gene37344:CDS | 35.0% |
| ! | TCTTGAAGAATGTTACTTGG+AGG | - | chr8.4:74932804-74932823 | None:intergenic | 35.0% |
| ! | TTTTAGTGTGAGAAAAGGGA+AGG | + | chr8.4:74930299-74930318 | MS.gene37344:CDS | 35.0% |
| !! | AAAGTGTTTCTGGAGAGTAT+GGG | + | chr8.4:74931044-74931063 | MS.gene37344:intron | 35.0% |
| !! | AGAAAAGTCACTTTGAGACA+AGG | + | chr8.4:74932239-74932258 | MS.gene37344:CDS | 35.0% |
| !! | ATGGGTTTTAGTGTGAGAAA+AGG | + | chr8.4:74930294-74930313 | MS.gene37344:CDS | 35.0% |
| !! | GTGACTTTTCTTTCTAGTAC+TGG | - | chr8.4:74932230-74932249 | None:intergenic | 35.0% |
| !! | TAAAGTGTTTCTGGAGAGTA+TGG | + | chr8.4:74931043-74931062 | MS.gene37344:intron | 35.0% |
| !! | TGGGTTTTAGTGTGAGAAAA+GGG | + | chr8.4:74930295-74930314 | MS.gene37344:CDS | 35.0% |
| !!! | TGATTGTTTTGGAGATGTTG+TGG | + | chr8.4:74930881-74930900 | MS.gene37344:intron | 35.0% |
| AATGTATCACAAGCCAAAGG+TGG | + | chr8.4:74930570-74930589 | MS.gene37344:CDS | 40.0% | |
| ACAAGCTTCAGGATCATAAG+TGG | + | chr8.4:74931306-74931325 | MS.gene37344:CDS | 40.0% | |
| CATTACATCCGCAATTGCTT+TGG | - | chr8.4:74931117-74931136 | None:intergenic | 40.0% | |
| CCATTCACTAGTATGCTACA+AGG | + | chr8.4:74932645-74932664 | MS.gene37344:CDS | 40.0% | |
| CCTCCTCAAGCAAAAACAAA+AGG | + | chr8.4:74932199-74932218 | MS.gene37344:CDS | 40.0% | |
| CCTTGTAGCATACTAGTGAA+TGG | - | chr8.4:74932648-74932667 | None:intergenic | 40.0% | |
| CTCAACAGATTATGTGGAAG+TGG | + | chr8.4:74932053-74932072 | MS.gene37344:CDS | 40.0% | |
| GTTTCCAATTGCATGGACAA+AGG | + | chr8.4:74932446-74932465 | MS.gene37344:CDS | 40.0% | |
| TAGATCGCAGCAAATGTCTT+TGG | - | chr8.4:74930545-74930564 | None:intergenic | 40.0% | |
| TGATTCAAGAACAGACTGCA+AGG | + | chr8.4:74930431-74930450 | MS.gene37344:CDS | 40.0% | |
| ! | AATGAATATCTTGAGGGTGC+TGG | + | chr8.4:74931638-74931657 | MS.gene37344:CDS | 40.0% |
| ! | GTCTTTTATAGCACCATCTC+AGG | + | chr8.4:74932487-74932506 | MS.gene37344:CDS | 40.0% |
| ! | TGTTACTTGGAGGTAACCAA+TGG | - | chr8.4:74932794-74932813 | None:intergenic | 40.0% |
| !! | TTGATTTGTGCTCCCTTTGT+TGG | + | chr8.4:74930939-74930958 | MS.gene37344:intron | 40.0% |
| !!! | ACGAATGTGTTTTGGAGAGA+TGG | + | chr8.4:74930840-74930859 | MS.gene37344:intron | 40.0% |
| !!! | CCTTTTGTTTTTGCTTGAGG+AGG | - | chr8.4:74932202-74932221 | None:intergenic | 40.0% |
| AGAGCCTTTGTCCATGCAAT+TGG | - | chr8.4:74932453-74932472 | None:intergenic | 45.0% | |
| AGCAAATGTCTTTGGTCTGG+TGG | - | chr8.4:74930537-74930556 | None:intergenic | 45.0% | |
| AGGGATCTAGCAACTACCAT+TGG | + | chr8.4:74932775-74932794 | MS.gene37344:intron | 45.0% | |
| ATGTGGAAGTGGCTTGATGT+TGG | + | chr8.4:74932064-74932083 | MS.gene37344:CDS | 45.0% | |
| GTACAACAACGCATCTACCT+CGG | + | chr8.4:74931453-74931472 | MS.gene37344:CDS | 45.0% | |
| TACAGATCAAGATGCAGCCA+TGG | + | chr8.4:74931091-74931110 | MS.gene37344:intron | 45.0% | |
| TTGCTGGTGTTTATAACGCG+CGG | - | chr8.4:74931563-74931582 | None:intergenic | 45.0% | |
| ! | AGCTTGTTCCAAAGTCTTGC+TGG | - | chr8.4:74931579-74931598 | None:intergenic | 45.0% |
| ! | CATTCGTCAAACGCGACTTT+TGG | - | chr8.4:74930827-74930846 | None:intergenic | 45.0% |
| ! | CGCGTTTGACGAATGTGTTT+TGG | + | chr8.4:74930832-74930851 | MS.gene37344:intron | 45.0% |
| !! | TATATATAACATTATATTAT+AGG | + | chr8.4:74932542-74932561 | MS.gene37344:intron | 5.0% |
| AAGAACAGACTGCAAGGCGA+TGG | + | chr8.4:74930437-74930456 | MS.gene37344:CDS | 50.0% | |
| AGCCATGGCCAAAGCAATTG+CGG | + | chr8.4:74931106-74931125 | MS.gene37344:intron | 50.0% | |
| AGCTATTTGGGGGAAGAGGT+AGG | + | chr8.4:74930642-74930661 | MS.gene37344:CDS | 50.0% | |
| ATCCGCAATTGCTTTGGCCA+TGG | - | chr8.4:74931111-74931130 | None:intergenic | 50.0% | |
| CAATGATCCGGAAAGGGAAG+TGG | + | chr8.4:74930395-74930414 | MS.gene37344:CDS | 50.0% | |
| CGCAGCAAATGTCTTTGGTC+TGG | - | chr8.4:74930540-74930559 | None:intergenic | 50.0% | |
| GGTAAAGAAGTGGCGGCAAT+TGG | + | chr8.4:74931499-74931518 | MS.gene37344:CDS | 50.0% | |
| TATTTGGGGGAAGAGGTAGG+TGG | + | chr8.4:74930645-74930664 | MS.gene37344:CDS | 50.0% | |
| TCATACGCCACTTCCCTTTC+CGG | - | chr8.4:74930405-74930424 | None:intergenic | 50.0% | |
| TTGGAGCTATTTGGGGGAAG+AGG | + | chr8.4:74930638-74930657 | MS.gene37344:CDS | 50.0% | |
| !! | GAATATCTTGAGGGTGCTGG+TGG | + | chr8.4:74931641-74931660 | MS.gene37344:CDS | 50.0% |
| AGCAGGGGATGCCCAATCTT+TGG | + | chr8.4:74930740-74930759 | MS.gene37344:intron | 55.0% | |
| CTGGTGTTTATAACGCGCGG+AGG | - | chr8.4:74931560-74931579 | None:intergenic | 55.0% | |
| GCGGCAATTGGAGAGTGAGA+AGG | + | chr8.4:74931511-74931530 | MS.gene37344:CDS | 55.0% | |
| ! | GGTCTGGTGGTGCAAAGTCA+TGG | - | chr8.4:74930524-74930543 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 74930177 | 74932848 | 74930177 | ID=MS.gene37344 |
| chr8.4 | mRNA | 74930177 | 74932848 | 74930177 | ID=MS.gene37344.t1;Parent=MS.gene37344 |
| chr8.4 | exon | 74930177 | 74930681 | 74930177 | ID=MS.gene37344.t1.exon1;Parent=MS.gene37344.t1 |
| chr8.4 | CDS | 74930177 | 74930681 | 74930177 | ID=cds.MS.gene37344.t1;Parent=MS.gene37344.t1 |
| chr8.4 | exon | 74931198 | 74931851 | 74931198 | ID=MS.gene37344.t1.exon2;Parent=MS.gene37344.t1 |
| chr8.4 | CDS | 74931198 | 74931851 | 74931198 | ID=cds.MS.gene37344.t1;Parent=MS.gene37344.t1 |
| chr8.4 | exon | 74931936 | 74932295 | 74931936 | ID=MS.gene37344.t1.exon3;Parent=MS.gene37344.t1 |
| chr8.4 | CDS | 74931936 | 74932295 | 74931936 | ID=cds.MS.gene37344.t1;Parent=MS.gene37344.t1 |
| chr8.4 | exon | 74932387 | 74932508 | 74932387 | ID=MS.gene37344.t1.exon4;Parent=MS.gene37344.t1 |
| chr8.4 | CDS | 74932387 | 74932508 | 74932387 | ID=cds.MS.gene37344.t1;Parent=MS.gene37344.t1 |
| chr8.4 | exon | 74932594 | 74932695 | 74932594 | ID=MS.gene37344.t1.exon5;Parent=MS.gene37344.t1 |
| chr8.4 | CDS | 74932594 | 74932695 | 74932594 | ID=cds.MS.gene37344.t1;Parent=MS.gene37344.t1 |
| chr8.4 | exon | 74932777 | 74932848 | 74932777 | ID=MS.gene37344.t1.exon6;Parent=MS.gene37344.t1 |
| chr8.4 | CDS | 74932777 | 74932848 | 74932777 | ID=cds.MS.gene37344.t1;Parent=MS.gene37344.t1 |
| Gene Sequence |
| Protein sequence |
