Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37382.t1 | GAU12189.1 | 67 | 179 | 46 | 4 | 234 | 404 | 29 | 202 | 2.70E-48 | 203 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37382.t1 | Q10MN5 | 38.6 | 127 | 66 | 2 | 119 | 234 | 315 | 440 | 4.6e-17 | 90.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37382.t1 | A0A2K3NX00 | 55.9 | 179 | 65 | 3 | 234 | 404 | 29 | 201 | 1.3e-36 | 163.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene37382.t1 | TR | HMG |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37382.t1 | MTR_1g115220 | 76.923 | 182 | 31 | 3 | 234 | 404 | 29 | 210 | 1.26e-80 | 247 |
| MS.gene37382.t1 | MTR_8g018100 | 79.439 | 107 | 10 | 2 | 234 | 339 | 151 | 246 | 2.99e-48 | 164 |
| MS.gene37382.t1 | MTR_7g112420 | 47.317 | 205 | 78 | 4 | 45 | 235 | 137 | 325 | 1.12e-38 | 148 |
| MS.gene37382.t1 | MTR_7g112420 | 47.317 | 205 | 78 | 4 | 45 | 235 | 267 | 455 | 1.76e-38 | 148 |
| MS.gene37382.t1 | MTR_1g083770 | 38.806 | 201 | 92 | 4 | 46 | 235 | 281 | 461 | 1.17e-27 | 115 |
| MS.gene37382.t1 | MTR_1g087880 | 40.541 | 148 | 76 | 2 | 99 | 235 | 301 | 447 | 6.43e-26 | 110 |
| MS.gene37382.t1 | MTR_7g109130 | 36.486 | 148 | 82 | 2 | 99 | 235 | 83 | 229 | 1.35e-21 | 97.4 |
| MS.gene37382.t1 | MTR_7g109130 | 36.486 | 148 | 82 | 2 | 99 | 235 | 4 | 150 | 1.46e-21 | 97.4 |
| MS.gene37382.t1 | MTR_7g109130 | 36.486 | 148 | 82 | 2 | 99 | 235 | 305 | 451 | 1.76e-21 | 97.4 |
| MS.gene37382.t1 | MTR_7g109130 | 36.486 | 148 | 82 | 2 | 99 | 235 | 305 | 451 | 1.78e-21 | 97.4 |
| MS.gene37382.t1 | MTR_3g115580 | 50.602 | 83 | 41 | 0 | 286 | 368 | 32 | 114 | 1.53e-20 | 88.2 |
| MS.gene37382.t1 | MTR_5g024180 | 41.905 | 105 | 57 | 1 | 283 | 383 | 16 | 120 | 4.49e-18 | 80.9 |
| MS.gene37382.t1 | MTR_7g068280 | 48.649 | 74 | 38 | 0 | 295 | 368 | 47 | 120 | 8.75e-17 | 77.8 |
| MS.gene37382.t1 | MTR_8g073345 | 38.679 | 106 | 58 | 3 | 283 | 382 | 16 | 120 | 7.01e-15 | 71.6 |
| MS.gene37382.t1 | MTR_8g073345 | 36.364 | 110 | 59 | 2 | 283 | 387 | 16 | 119 | 7.11e-14 | 68.9 |
| MS.gene37382.t1 | MTR_4g094622 | 44.595 | 74 | 41 | 0 | 295 | 368 | 60 | 133 | 1.77e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37382.t1 | AT5G23420 | 44.828 | 145 | 63 | 5 | 234 | 364 | 38 | 179 | 3.61e-22 | 95.1 |
| MS.gene37382.t1 | AT1G09170 | 37.008 | 127 | 69 | 1 | 120 | 235 | 360 | 486 | 1.50e-21 | 97.8 |
| MS.gene37382.t1 | AT1G09170 | 37.008 | 127 | 69 | 1 | 120 | 235 | 360 | 486 | 1.53e-21 | 97.8 |
| MS.gene37382.t1 | AT1G09170 | 37.008 | 127 | 69 | 1 | 120 | 235 | 360 | 486 | 2.23e-21 | 97.1 |
| MS.gene37382.t1 | AT1G09170 | 37.008 | 127 | 69 | 1 | 120 | 235 | 360 | 486 | 2.89e-21 | 96.7 |
| MS.gene37382.t1 | AT1G09170 | 37.008 | 127 | 69 | 1 | 120 | 235 | 360 | 486 | 2.89e-21 | 96.7 |
| MS.gene37382.t1 | AT1G09170 | 37.008 | 127 | 69 | 1 | 120 | 235 | 360 | 486 | 3.49e-21 | 96.7 |
| MS.gene37382.t1 | AT1G09170 | 37.008 | 127 | 69 | 1 | 120 | 235 | 360 | 486 | 4.07e-21 | 96.3 |
| MS.gene37382.t1 | AT1G09170 | 37.008 | 127 | 69 | 1 | 120 | 235 | 360 | 486 | 4.07e-21 | 96.3 |
| MS.gene37382.t1 | AT5G27000 | 33.333 | 156 | 84 | 5 | 99 | 235 | 293 | 447 | 1.32e-18 | 88.6 |
| MS.gene37382.t1 | AT3G51880 | 38.235 | 136 | 79 | 2 | 273 | 404 | 28 | 162 | 1.92e-18 | 83.2 |
| MS.gene37382.t1 | AT2G47500 | 34.965 | 143 | 80 | 3 | 105 | 235 | 309 | 450 | 3.03e-18 | 87.4 |
| MS.gene37382.t1 | AT2G47500 | 34.965 | 143 | 80 | 3 | 105 | 235 | 309 | 450 | 3.71e-18 | 87.4 |
| MS.gene37382.t1 | AT3G51880 | 39.496 | 119 | 71 | 1 | 273 | 391 | 28 | 145 | 4.77e-18 | 81.6 |
| MS.gene37382.t1 | AT3G51880 | 39.496 | 119 | 71 | 1 | 273 | 391 | 28 | 145 | 4.77e-18 | 81.6 |
| MS.gene37382.t1 | AT3G51880 | 39.496 | 119 | 71 | 1 | 273 | 391 | 28 | 145 | 4.77e-18 | 81.6 |
| MS.gene37382.t1 | AT3G51880 | 41.121 | 107 | 62 | 1 | 273 | 379 | 28 | 133 | 1.21e-17 | 80.1 |
| MS.gene37382.t1 | AT4G35570 | 45.000 | 80 | 44 | 0 | 290 | 369 | 25 | 104 | 1.80e-17 | 78.6 |
| MS.gene37382.t1 | AT4G35570 | 45.000 | 80 | 44 | 0 | 290 | 369 | 25 | 104 | 1.80e-17 | 78.6 |
| MS.gene37382.t1 | AT2G17560 | 39.785 | 93 | 55 | 1 | 290 | 381 | 25 | 117 | 1.75e-15 | 73.2 |
| MS.gene37382.t1 | AT2G17560 | 39.785 | 93 | 55 | 1 | 290 | 381 | 25 | 117 | 1.94e-15 | 73.2 |
| MS.gene37382.t1 | AT2G17560 | 39.785 | 93 | 55 | 1 | 290 | 381 | 25 | 117 | 1.94e-15 | 73.2 |
| MS.gene37382.t1 | AT1G20696 | 43.689 | 103 | 56 | 2 | 281 | 382 | 18 | 119 | 2.24e-15 | 73.2 |
| MS.gene37382.t1 | AT1G20693 | 42.857 | 98 | 54 | 2 | 287 | 382 | 25 | 122 | 2.62e-15 | 73.2 |
| MS.gene37382.t1 | AT1G20693 | 42.857 | 98 | 54 | 2 | 287 | 382 | 25 | 122 | 2.68e-15 | 73.2 |
| MS.gene37382.t1 | AT1G20693 | 42.857 | 98 | 54 | 2 | 287 | 382 | 25 | 122 | 4.34e-15 | 72.4 |
| MS.gene37382.t1 | AT1G20696 | 44.318 | 88 | 48 | 1 | 281 | 368 | 18 | 104 | 8.43e-15 | 71.2 |
| MS.gene37382.t1 | AT1G20696 | 44.318 | 88 | 48 | 1 | 281 | 368 | 18 | 104 | 3.44e-14 | 70.1 |
Find 84 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATCTTAGGCAATGAATT+TGG | 0.092469 | 8.4:+74461557 | MS.gene37382:CDS |
| CTTCCCCTCTTTCCCGTATT+TGG | 0.175158 | 8.4:-74462797 | None:intergenic |
| CTGCAGAGTTAGACCTTTCT+TGG | 0.250929 | 8.4:+74462728 | MS.gene37382:CDS |
| ATGACAGAACAATATATCTT+AGG | 0.324027 | 8.4:+74461545 | MS.gene37382:CDS |
| GGATGTTCCTATCTTGTTGT+TGG | 0.343196 | 8.4:-74462087 | None:intergenic |
| CAAAGCAGTGATAATGTAAA+TGG | 0.351518 | 8.4:-74461471 | None:intergenic |
| AATCAAGTGCAGGATCTTAA+AGG | 0.353043 | 8.4:+74462450 | MS.gene37382:CDS |
| TAAAGTTGGGAAAGGGAAAA+AGG | 0.356050 | 8.4:+74463318 | MS.gene37382:CDS |
| AGCCTAGCTTCTGATGCTTC+AGG | 0.368130 | 8.4:+74462391 | MS.gene37382:CDS |
| ATATCTTAGGCAATGAATTT+GGG | 0.373409 | 8.4:+74461558 | MS.gene37382:CDS |
| GATGTTCCTATCTTGTTGTT+GGG | 0.390616 | 8.4:-74462086 | None:intergenic |
| GTGATAATGTAAATGGTCTT+TGG | 0.390998 | 8.4:-74461464 | None:intergenic |
| AGGAGTTCAGTTTCTGCAAA+TGG | 0.392519 | 8.4:+74462234 | MS.gene37382:CDS |
| ATTGTCCATCAAACAAAATC+AGG | 0.396777 | 8.4:+74462214 | MS.gene37382:CDS |
| CTCGCAACGCCTTCCAAATA+CGG | 0.397359 | 8.4:+74462784 | MS.gene37382:CDS |
| TATCACTGCTTTGCGTGCTT+CGG | 0.401112 | 8.4:+74461481 | MS.gene37382:CDS |
| ATCTTGATTCAAAGGATGTT+AGG | 0.404379 | 8.4:+74463511 | MS.gene37382:CDS |
| TTAGATAGATGATCTCCTTC+TGG | 0.406024 | 8.4:-74462261 | None:intergenic |
| TCTTCCGTCTCTCCTGGTGC+AGG | 0.423182 | 8.4:-74464020 | None:intergenic |
| ACTGCTTTGCGTGCTTCGGC+TGG | 0.426108 | 8.4:+74461485 | MS.gene37382:CDS |
| GCAAGATAAACAAAAGAAGA+TGG | 0.442123 | 8.4:+74461952 | MS.gene37382:CDS |
| CCCTCTTTCCCGTATTTGGA+AGG | 0.444706 | 8.4:-74462793 | None:intergenic |
| CTTCCGTCTCTCCTGGTGCA+GGG | 0.453369 | 8.4:-74464019 | None:intergenic |
| AGTTAGCCCAACAACAAGAT+AGG | 0.454814 | 8.4:+74462080 | MS.gene37382:CDS |
| ACTTTAGTCCGTTTCGCAGT+TGG | 0.458641 | 8.4:-74463301 | None:intergenic |
| GTTAACTCTTCCGTCTCTCC+TGG | 0.463784 | 8.4:-74464026 | None:intergenic |
| ACAAAAGAAGATGGGAAAAG+AGG | 0.467579 | 8.4:+74461961 | MS.gene37382:CDS |
| GGAAGCTAATCTTGATTCAA+AGG | 0.468919 | 8.4:+74463503 | MS.gene37382:CDS |
| AGAAGGCCAATCTGATGATA+AGG | 0.473418 | 8.4:+74463992 | MS.gene37382:CDS |
| ACTGCGAAACGGACTAAAGT+TGG | 0.477591 | 8.4:+74463304 | MS.gene37382:CDS |
| TGCAGAGTTAGACCTTTCTT+GGG | 0.479185 | 8.4:+74462729 | MS.gene37382:CDS |
| GGGCTTCCTTATCATCAGAT+TGG | 0.481597 | 8.4:-74463998 | None:intergenic |
| AGCCCCTGCACCAGGAGAGA+CGG | 0.488358 | 8.4:+74464016 | MS.gene37382:CDS |
| AAATGCTTAGAATGATTCTT+CGG | 0.497238 | 8.4:-74461511 | None:intergenic |
| GCCAAAATCAAAATGAATCT+CGG | 0.501868 | 8.4:+74463016 | MS.gene37382:CDS |
| AGTTGCTTCTGTTGATGAAG+AGG | 0.504083 | 8.4:+74461791 | MS.gene37382:CDS |
| AGGACGATGAGGAAGCAATC+AGG | 0.504732 | 8.4:+74462038 | MS.gene37382:CDS |
| GATTATTAAGATGGGAAAAG+AGG | 0.511336 | 8.4:+74461913 | MS.gene37382:intron |
| CTGCGAAACGGACTAAAGTT+GGG | 0.511483 | 8.4:+74463305 | MS.gene37382:CDS |
| AGTTAACAGATGAGGAGTAG+TGG | 0.515594 | 8.4:+74464042 | MS.gene37382:CDS |
| GATAAGGAAGCCCCTGCACC+AGG | 0.518868 | 8.4:+74464008 | MS.gene37382:CDS |
| GGGAAAAGAGGAGGATGGAG+AGG | 0.520888 | 8.4:+74461925 | MS.gene37382:CDS |
| GGGAAAAGAGGAGGATGGAG+AGG | 0.520888 | 8.4:+74461973 | MS.gene37382:CDS |
| TTCCGTCTCTCCTGGTGCAG+GGG | 0.527055 | 8.4:-74464018 | None:intergenic |
| CCTTCCAAATACGGGAAAGA+GGG | 0.531653 | 8.4:+74462793 | MS.gene37382:CDS |
| CGGGAGGAATCTGATAAAGA+AGG | 0.539570 | 8.4:+74463975 | MS.gene37382:CDS |
| GCACTTGATTGTACAACTTG+CGG | 0.541107 | 8.4:-74462437 | None:intergenic |
| GTAAGGAAGATTGCGAGAAG+TGG | 0.541777 | 8.4:+74463640 | MS.gene37382:CDS |
| TTCTTGGGTTATCAATAACA+TGG | 0.543407 | 8.4:+74462744 | MS.gene37382:CDS |
| ATGAAAAGAAAGAAATCAGT+TGG | 0.544749 | 8.4:-74463370 | None:intergenic |
| CAAGATAAACAAAAGAAGAT+GGG | 0.546923 | 8.4:+74461953 | MS.gene37382:CDS |
| GCCTTCCAAATACGGGAAAG+AGG | 0.548287 | 8.4:+74462792 | MS.gene37382:CDS |
| CAAAAGAACCAACTGCGAAA+CGG | 0.556686 | 8.4:+74463293 | MS.gene37382:CDS |
| GAAGTGGAGGTCTTTGACTG+AGG | 0.557902 | 8.4:+74463656 | MS.gene37382:CDS |
| TGTTATTGATAACCCAAGAA+AGG | 0.559110 | 8.4:-74462741 | None:intergenic |
| GGTTATCAATAACATGGAGG+AGG | 0.560184 | 8.4:+74462750 | MS.gene37382:CDS |
| TCGCAACGCCTTCCAAATAC+GGG | 0.563827 | 8.4:+74462785 | MS.gene37382:CDS |
| AAGATGGGAAAAGAGGAGGA+TGG | 0.566674 | 8.4:+74461968 | MS.gene37382:CDS |
| AAGATGGGAAAAGAGGAGGA+TGG | 0.567584 | 8.4:+74461920 | MS.gene37382:intron |
| TTGATTCAAAGGATGTTAGG+AGG | 0.570900 | 8.4:+74463514 | MS.gene37382:CDS |
| GACGGAAGAGTTAACAGATG+AGG | 0.573003 | 8.4:+74464034 | MS.gene37382:CDS |
| AGCAACATTATACAATTCCA+TGG | 0.578280 | 8.4:-74463841 | None:intergenic |
| ATCCTGAAGCATCAGAAGCT+AGG | 0.580552 | 8.4:-74462393 | None:intergenic |
| AAAGAAGATGGGAAAAGAGG+AGG | 0.581326 | 8.4:+74461964 | MS.gene37382:CDS |
| AACGGACTAAAGTTGGGAAA+GGG | 0.587037 | 8.4:+74463311 | MS.gene37382:CDS |
| AAACGGACTAAAGTTGGGAA+AGG | 0.588435 | 8.4:+74463310 | MS.gene37382:CDS |
| TGATTCAAAGGATGTTAGGA+GGG | 0.600809 | 8.4:+74463515 | MS.gene37382:CDS |
| ACAACAAGATAGGAACATCC+AGG | 0.609391 | 8.4:+74462090 | MS.gene37382:CDS |
| TATTAAGATGGGAAAAGAGG+AGG | 0.610551 | 8.4:+74461916 | MS.gene37382:intron |
| CAAGTTGTACAATCAAGTGC+AGG | 0.611186 | 8.4:+74462440 | MS.gene37382:CDS |
| AGGAAGATTGCGAGAAGTGG+AGG | 0.614149 | 8.4:+74463643 | MS.gene37382:CDS |
| GGACTTGCAAGATAAACAAG+AGG | 0.614181 | 8.4:+74461994 | MS.gene37382:CDS |
| AGATAGTGATGAGAATTCAA+AGG | 0.615424 | 8.4:+74462018 | MS.gene37382:CDS |
| GGCAGAATATGAGAAGGCCA+TGG | 0.621119 | 8.4:+74463824 | MS.gene37382:CDS |
| TCTGCAAATGGAATACCAGA+AGG | 0.624242 | 8.4:+74462246 | MS.gene37382:CDS |
| GTTATCAATAACATGGAGGA+GGG | 0.637178 | 8.4:+74462751 | MS.gene37382:CDS |
| TATGTTTGTTCAGGATCGGG+AGG | 0.638946 | 8.4:+74463959 | MS.gene37382:intron |
| CTTCCAAATACGGGAAAGAG+GGG | 0.639028 | 8.4:+74462794 | MS.gene37382:CDS |
| TGAGAATTCAAAGGACGATG+AGG | 0.660180 | 8.4:+74462027 | MS.gene37382:CDS |
| ACTCATGGCAGAATATGAGA+AGG | 0.674706 | 8.4:+74463818 | MS.gene37382:CDS |
| AAAACAAACTCAAGAAGACA+AGG | 0.683712 | 8.4:+74461737 | MS.gene37382:CDS |
| TTGGGTTATCAATAACATGG+AGG | 0.686554 | 8.4:+74462747 | MS.gene37382:CDS |
| AAAGGTTAAGGATTCTAATG+CGG | 0.688426 | 8.4:+74463336 | MS.gene37382:CDS |
| CTGAAGTGAAGAAACCCGAG+AGG | 0.719762 | 8.4:+74463169 | MS.gene37382:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATTTGATTTTATTTAATT+TGG | + | chr8.4:74463114-74463133 | MS.gene37382:intron | 10.0% |
| !!! | TTGATAATAATTACTAATTA+GGG | - | chr8.4:74463065-74463084 | None:intergenic | 10.0% |
| !!! | TTTGATAATAATTACTAATT+AGG | - | chr8.4:74463066-74463085 | None:intergenic | 10.0% |
| !! | AATATTCACAAACTAAAATT+GGG | - | chr8.4:74463208-74463227 | None:intergenic | 15.0% |
| !!! | TTAAGAAGCATTATTTTAAA+TGG | - | chr8.4:74462497-74462516 | None:intergenic | 15.0% |
| !!! | TTATTTTTTTGGAATTTTGT+AGG | + | chr8.4:74463260-74463279 | MS.gene37382:intron | 15.0% |
| !!! | TTTTCATTCATAATTATTTC+TGG | - | chr8.4:74461832-74461851 | None:intergenic | 15.0% |
| !! | ATATTCACAAACTAAAATTG+GGG | - | chr8.4:74463207-74463226 | None:intergenic | 20.0% |
| !! | CAATATTCACAAACTAAAAT+TGG | - | chr8.4:74463209-74463228 | None:intergenic | 20.0% |
| !! | TGAAAATGATATGTTTAGAT+TGG | + | chr8.4:74461846-74461865 | MS.gene37382:intron | 20.0% |
| !! | TGATATGGTTAAAATTGTTT+AGG | + | chr8.4:74463764-74463783 | MS.gene37382:intron | 20.0% |
| !! | TTATGAACAAAAAATTGTAG+AGG | - | chr8.4:74461708-74461727 | None:intergenic | 20.0% |
| !!! | AATGAAGTATGTTTTCTTTT+AGG | + | chr8.4:74463873-74463892 | MS.gene37382:intron | 20.0% |
| !!! | ATTCATGTGAACAATTTTTT+AGG | + | chr8.4:74462180-74462199 | MS.gene37382:intron | 20.0% |
| !!! | ATTTCTTTCTTTTCATGTAA+GGG | + | chr8.4:74463377-74463396 | MS.gene37382:intron | 20.0% |
| !!! | CAATTTTAGTTTGTGAATAT+TGG | + | chr8.4:74463207-74463226 | MS.gene37382:intron | 20.0% |
| !!! | CTACAATTTTTTGTTCATAA+TGG | + | chr8.4:74461708-74461727 | MS.gene37382:intron | 20.0% |
| !!! | GTTTGTTTCATAATATGTTT+TGG | + | chr8.4:74463903-74463922 | MS.gene37382:intron | 20.0% |
| !!! | TGTTTTGATTAACTTATCTA+AGG | + | chr8.4:74463574-74463593 | MS.gene37382:intron | 20.0% |
| !!! | TTATATATATGAGCAGTTTT+TGG | + | chr8.4:74462579-74462598 | MS.gene37382:intron | 20.0% |
| !!! | TTCACTAAACTTTTTTATCT+GGG | + | chr8.4:74461890-74461909 | MS.gene37382:intron | 20.0% |
| ! | AAATGCTTAGAATGATTCTT+CGG | - | chr8.4:74461514-74461533 | None:intergenic | 25.0% |
| ! | AGAAACTTGGAATTTAGTAA+AGG | - | chr8.4:74461597-74461616 | None:intergenic | 25.0% |
| ! | ATATCTTAGGCAATGAATTT+GGG | + | chr8.4:74461558-74461577 | MS.gene37382:CDS | 25.0% |
| ! | ATGAAAAGAAAGAAATCAGT+TGG | - | chr8.4:74463373-74463392 | None:intergenic | 25.0% |
| ! | ATGACAGAACAATATATCTT+AGG | + | chr8.4:74461545-74461564 | MS.gene37382:CDS | 25.0% |
| ! | ATGTAATGCAAAAACTAGAT+TGG | + | chr8.4:74463618-74463637 | MS.gene37382:intron | 25.0% |
| ! | CAAGATAAACAAAAGAAGAT+GGG | + | chr8.4:74461953-74461972 | MS.gene37382:CDS | 25.0% |
| ! | GACATTGTAGTAAATATTGA+AGG | - | chr8.4:74462320-74462339 | None:intergenic | 25.0% |
| ! | TATATCTTAGGCAATGAATT+TGG | + | chr8.4:74461557-74461576 | MS.gene37382:CDS | 25.0% |
| ! | TCAAAAACTTTATCCGAAAA+AGG | - | chr8.4:74463798-74463817 | None:intergenic | 25.0% |
| ! | TTGTTTAGTTGAATTGTGTT+TGG | + | chr8.4:74463548-74463567 | MS.gene37382:intron | 25.0% |
| !! | ACATTGTTTGGTAATTGATA+AGG | + | chr8.4:74462145-74462164 | MS.gene37382:intron | 25.0% |
| !! | GATTTCTTTCTTTTCATGTA+AGG | + | chr8.4:74463376-74463395 | MS.gene37382:intron | 25.0% |
| !! | TGAGTTTAGAAAGACTTTTA+AGG | + | chr8.4:74463482-74463501 | MS.gene37382:CDS | 25.0% |
| !!! | AAGTTGATGAAAACATTGTT+TGG | + | chr8.4:74462133-74462152 | MS.gene37382:intron | 25.0% |
| !!! | CTTCACTAAACTTTTTTATC+TGG | + | chr8.4:74461889-74461908 | MS.gene37382:intron | 25.0% |
| !!! | TCACTAAACTTTTTTATCTG+GGG | + | chr8.4:74461891-74461910 | MS.gene37382:intron | 25.0% |
| AAAACAAACTCAAGAAGACA+AGG | + | chr8.4:74461737-74461756 | MS.gene37382:CDS | 30.0% | |
| AAAGGTTAAGGATTCTAATG+CGG | + | chr8.4:74463336-74463355 | MS.gene37382:CDS | 30.0% | |
| AGATAGTGATGAGAATTCAA+AGG | + | chr8.4:74462018-74462037 | MS.gene37382:CDS | 30.0% | |
| AGCAACATTATACAATTCCA+TGG | - | chr8.4:74463844-74463863 | None:intergenic | 30.0% | |
| ATCTTGATTCAAAGGATGTT+AGG | + | chr8.4:74463511-74463530 | MS.gene37382:CDS | 30.0% | |
| ATGCAAAAACTAGATTGGTA+AGG | + | chr8.4:74463623-74463642 | MS.gene37382:intron | 30.0% | |
| ATTGTCCATCAAACAAAATC+AGG | + | chr8.4:74462214-74462233 | MS.gene37382:CDS | 30.0% | |
| CATGTTCATGGGAAATATTA+AGG | + | chr8.4:74462699-74462718 | MS.gene37382:intron | 30.0% | |
| GATTATTAAGATGGGAAAAG+AGG | + | chr8.4:74461913-74461932 | MS.gene37382:intron | 30.0% | |
| GCAAGATAAACAAAAGAAGA+TGG | + | chr8.4:74461952-74461971 | MS.gene37382:CDS | 30.0% | |
| GCCAAAATCAAAATGAATCT+CGG | + | chr8.4:74463016-74463035 | MS.gene37382:CDS | 30.0% | |
| TATCTGGGGATTATTAAGAT+GGG | + | chr8.4:74461905-74461924 | MS.gene37382:intron | 30.0% | |
| TGAACAACTAATAGCATGTT+TGG | - | chr8.4:74462640-74462659 | None:intergenic | 30.0% | |
| TGCACCAAATTCAATCAAAA+CGG | - | chr8.4:74463709-74463728 | None:intergenic | 30.0% | |
| TGTATATATTGCAAGTTACC+TGG | - | chr8.4:74462111-74462130 | None:intergenic | 30.0% | |
| TTATCTGGGGATTATTAAGA+TGG | + | chr8.4:74461904-74461923 | MS.gene37382:intron | 30.0% | |
| TTCTTGGGTTATCAATAACA+TGG | + | chr8.4:74462744-74462763 | MS.gene37382:CDS | 30.0% | |
| ! | CAAACTTTTTGCATGTTCAT+GGG | + | chr8.4:74462688-74462707 | MS.gene37382:intron | 30.0% |
| ! | CAAAGCAGTGATAATGTAAA+TGG | - | chr8.4:74461474-74461493 | None:intergenic | 30.0% |
| ! | GGATAAAGTTTTTGAACTCA+TGG | + | chr8.4:74463803-74463822 | MS.gene37382:CDS | 30.0% |
| ! | GTGATAATGTAAATGGTCTT+TGG | - | chr8.4:74461467-74461486 | None:intergenic | 30.0% |
| ! | TGTTATTGATAACCCAAGAA+AGG | - | chr8.4:74462744-74462763 | None:intergenic | 30.0% |
| !! | TTTTTCCTCAGAATCGATTT+TGG | - | chr8.4:74462608-74462627 | None:intergenic | 30.0% |
| !!! | ACAGAAGCAACTTTTGAAAT+TGG | - | chr8.4:74461783-74461802 | None:intergenic | 30.0% |
| !!! | ACCGAGATTCATTTTGATTT+TGG | - | chr8.4:74463020-74463039 | None:intergenic | 30.0% |
| !!! | TCATTTTGATTTTGGCTTCA+AGG | - | chr8.4:74463012-74463031 | None:intergenic | 30.0% |
| !!! | TGTTCCGTTTTGATTGAATT+TGG | + | chr8.4:74463702-74463721 | MS.gene37382:intron | 30.0% |
| !!! | TTGTTTGTGCTGTTTTGTAA+TGG | + | chr8.4:74463406-74463425 | MS.gene37382:intron | 30.0% |
| AATCAAGTGCAGGATCTTAA+AGG | + | chr8.4:74462450-74462469 | MS.gene37382:CDS | 35.0% | |
| AATGCTTCTTAATGCATGTG+TGG | + | chr8.4:74462505-74462524 | MS.gene37382:intron | 35.0% | |
| ACAAAAGAAGATGGGAAAAG+AGG | + | chr8.4:74461961-74461980 | MS.gene37382:CDS | 35.0% | |
| ACTTGTCAGCTACTCTTAAT+AGG | + | chr8.4:74462355-74462374 | MS.gene37382:intron | 35.0% | |
| AGTTTGTGAATATTGGACTC+TGG | + | chr8.4:74463214-74463233 | MS.gene37382:intron | 35.0% | |
| CAAGTTTCTTCTCCAGAAAT+TGG | + | chr8.4:74461608-74461627 | MS.gene37382:intron | 35.0% | |
| CCATGAACATGCAAAAAGTT+TGG | - | chr8.4:74462690-74462709 | None:intergenic | 35.0% | |
| CTATATGTTTGTTCAGGATC+GGG | + | chr8.4:74463956-74463975 | MS.gene37382:intron | 35.0% | |
| GCTATATGTTTGTTCAGGAT+CGG | + | chr8.4:74463955-74463974 | MS.gene37382:intron | 35.0% | |
| GGAAAAAAATTTCACCTCTC+GGG | - | chr8.4:74463186-74463205 | None:intergenic | 35.0% | |
| GGAAGCTAATCTTGATTCAA+AGG | + | chr8.4:74463503-74463522 | MS.gene37382:CDS | 35.0% | |
| GGAGATCATCTATCTAAGTA+TGG | + | chr8.4:74462267-74462286 | MS.gene37382:intron | 35.0% | |
| GGGAAAAAAATTTCACCTCT+CGG | - | chr8.4:74463187-74463206 | None:intergenic | 35.0% | |
| GTGTTATGTTTATGTGATGC+TGG | + | chr8.4:74463731-74463750 | MS.gene37382:intron | 35.0% | |
| GTTATCAATAACATGGAGGA+GGG | + | chr8.4:74462751-74462770 | MS.gene37382:CDS | 35.0% | |
| TAAAGTTGGGAAAGGGAAAA+AGG | + | chr8.4:74463318-74463337 | MS.gene37382:CDS | 35.0% | |
| TATTAAGATGGGAAAAGAGG+AGG | + | chr8.4:74461916-74461935 | MS.gene37382:intron | 35.0% | |
| TGATTCAAAGGATGTTAGGA+GGG | + | chr8.4:74463515-74463534 | MS.gene37382:CDS | 35.0% | |
| TGGAATTTAGTAAAGGAGTG+TGG | - | chr8.4:74461590-74461609 | None:intergenic | 35.0% | |
| TTAGATAGATGATCTCCTTC+TGG | - | chr8.4:74462264-74462283 | None:intergenic | 35.0% | |
| TTGATTCAAAGGATGTTAGG+AGG | + | chr8.4:74463514-74463533 | MS.gene37382:CDS | 35.0% | |
| TTGGGTTATCAATAACATGG+AGG | + | chr8.4:74462747-74462766 | MS.gene37382:CDS | 35.0% | |
| ! | AAAAAAGAGTGCGAACGAAA+TGG | - | chr8.4:74462878-74462897 | None:intergenic | 35.0% |
| ! | CAATTTCTGGAGAAGAAACT+TGG | - | chr8.4:74461610-74461629 | None:intergenic | 35.0% |
| ! | CCAAACTTTTTGCATGTTCA+TGG | + | chr8.4:74462687-74462706 | MS.gene37382:intron | 35.0% |
| ! | TCTGTTGATGAAGAGGTAAA+AGG | + | chr8.4:74461798-74461817 | MS.gene37382:intron | 35.0% |
| ! | TTAGGAGAAGAAGCCTTTTT+CGG | + | chr8.4:74463782-74463801 | MS.gene37382:intron | 35.0% |
| ! | TTTATGTGATGCTGGTCTAA+TGG | + | chr8.4:74463739-74463758 | MS.gene37382:intron | 35.0% |
| !! | GAACTCCTGATTTTGTTTGA+TGG | - | chr8.4:74462222-74462241 | None:intergenic | 35.0% |
| !! | GATGTTCCTATCTTGTTGTT+GGG | - | chr8.4:74462089-74462108 | None:intergenic | 35.0% |
| !! | GATTGGTTTGATTTGTTGCA+GGG | + | chr8.4:74463458-74463477 | MS.gene37382:intron | 35.0% |
| !! | GCAGTTGGTTCTTTTGAATT+TGG | - | chr8.4:74463289-74463308 | None:intergenic | 35.0% |
| !! | GGTTTGGTTCTATAGTTTGA+GGG | + | chr8.4:74463427-74463446 | MS.gene37382:intron | 35.0% |
| !! | TGATTGGTTTGATTTGTTGC+AGG | + | chr8.4:74463457-74463476 | MS.gene37382:intron | 35.0% |
| !! | TGGTTTGGTTCTATAGTTTG+AGG | + | chr8.4:74463426-74463445 | MS.gene37382:intron | 35.0% |
| !!! | GTTTGAGGGTTTTAGTTGAT+TGG | + | chr8.4:74463441-74463460 | MS.gene37382:intron | 35.0% |
| !!! | TGTGCTGTTTTGTAATGGTT+TGG | + | chr8.4:74463411-74463430 | MS.gene37382:intron | 35.0% |
| AAAGAAGATGGGAAAAGAGG+AGG | + | chr8.4:74461964-74461983 | MS.gene37382:CDS | 40.0% | |
| ACAACAAGATAGGAACATCC+AGG | + | chr8.4:74462090-74462109 | MS.gene37382:CDS | 40.0% | |
| ACTCATGGCAGAATATGAGA+AGG | + | chr8.4:74463818-74463837 | MS.gene37382:CDS | 40.0% | |
| AGAAGGAAATGCTGCAATAC+GGG | - | chr8.4:74461678-74461697 | None:intergenic | 40.0% | |
| AGAAGGCCAATCTGATGATA+AGG | + | chr8.4:74463992-74464011 | MS.gene37382:CDS | 40.0% | |
| AGGAGTTCAGTTTCTGCAAA+TGG | + | chr8.4:74462234-74462253 | MS.gene37382:CDS | 40.0% | |
| AGTTAGCCCAACAACAAGAT+AGG | + | chr8.4:74462080-74462099 | MS.gene37382:CDS | 40.0% | |
| CAAAAGAACCAACTGCGAAA+CGG | + | chr8.4:74463293-74463312 | MS.gene37382:CDS | 40.0% | |
| CAAGTTGTACAATCAAGTGC+AGG | + | chr8.4:74462440-74462459 | MS.gene37382:CDS | 40.0% | |
| GAAGAGAAGAACGAACCATT+TGG | - | chr8.4:74462851-74462870 | None:intergenic | 40.0% | |
| GAGAAGGAAATGCTGCAATA+CGG | - | chr8.4:74461679-74461698 | None:intergenic | 40.0% | |
| GCACTTGATTGTACAACTTG+CGG | - | chr8.4:74462440-74462459 | None:intergenic | 40.0% | |
| GGACTTGCAAGATAAACAAG+AGG | + | chr8.4:74461994-74462013 | MS.gene37382:CDS | 40.0% | |
| GGTTATCAATAACATGGAGG+AGG | + | chr8.4:74462750-74462769 | MS.gene37382:CDS | 40.0% | |
| TCTGCAAATGGAATACCAGA+AGG | + | chr8.4:74462246-74462265 | MS.gene37382:CDS | 40.0% | |
| TGAGAATTCAAAGGACGATG+AGG | + | chr8.4:74462027-74462046 | MS.gene37382:CDS | 40.0% | |
| TGCAGAGTTAGACCTTTCTT+GGG | + | chr8.4:74462729-74462748 | MS.gene37382:CDS | 40.0% | |
| TGGGAAAGGGAAAAAGGTTA+AGG | + | chr8.4:74463324-74463343 | MS.gene37382:CDS | 40.0% | |
| ! | AGTTGCTTCTGTTGATGAAG+AGG | + | chr8.4:74461791-74461810 | MS.gene37382:CDS | 40.0% |
| ! | GCTGGTCTAATGGTATGATA+TGG | + | chr8.4:74463749-74463768 | MS.gene37382:intron | 40.0% |
| ! | GGATGTTCCTATCTTGTTGT+TGG | - | chr8.4:74462090-74462109 | None:intergenic | 40.0% |
| ! | GGTTTCCAAAATCGATTCTG+AGG | + | chr8.4:74462600-74462619 | MS.gene37382:intron | 40.0% |
| !! | AAACGGACTAAAGTTGGGAA+AGG | + | chr8.4:74463310-74463329 | MS.gene37382:CDS | 40.0% |
| !! | AACGGACTAAAGTTGGGAAA+GGG | + | chr8.4:74463311-74463330 | MS.gene37382:CDS | 40.0% |
| !! | CTGGTGCTATATGTTTGTTC+AGG | + | chr8.4:74463950-74463969 | MS.gene37382:intron | 40.0% |
| !! | TCACACTCTTTTTCGCCAAA+TGG | + | chr8.4:74462833-74462852 | MS.gene37382:CDS | 40.0% |
| !!! | TTTGCTCTCTTTTCTGAAGC+TGG | + | chr8.4:74463931-74463950 | MS.gene37382:intron | 40.0% |
| AAGATGGGAAAAGAGGAGGA+TGG | + | chr8.4:74461920-74461939 | MS.gene37382:intron | 45.0% | |
| ACTTTAGTCCGTTTCGCAGT+TGG | - | chr8.4:74463304-74463323 | None:intergenic | 45.0% | |
| CACGAGTTGCATCCAATTTC+TGG | - | chr8.4:74461623-74461642 | None:intergenic | 45.0% | |
| CCTTCCAAATACGGGAAAGA+GGG | + | chr8.4:74462793-74462812 | MS.gene37382:CDS | 45.0% | |
| CGGGAGGAATCTGATAAAGA+AGG | + | chr8.4:74463975-74463994 | MS.gene37382:CDS | 45.0% | |
| CTGCAGAGTTAGACCTTTCT+TGG | + | chr8.4:74462728-74462747 | MS.gene37382:CDS | 45.0% | |
| CTTCCAAATACGGGAAAGAG+GGG | + | chr8.4:74462794-74462813 | MS.gene37382:CDS | 45.0% | |
| GACGGAAGAGTTAACAGATG+AGG | + | chr8.4:74464034-74464053 | MS.gene37382:CDS | 45.0% | |
| GGGCTTCCTTATCATCAGAT+TGG | - | chr8.4:74464001-74464020 | None:intergenic | 45.0% | |
| GTAAGGAAGATTGCGAGAAG+TGG | + | chr8.4:74463640-74463659 | MS.gene37382:CDS | 45.0% | |
| TATCACTGCTTTGCGTGCTT+CGG | + | chr8.4:74461481-74461500 | MS.gene37382:CDS | 45.0% | |
| TATGTTTGTTCAGGATCGGG+AGG | + | chr8.4:74463959-74463978 | MS.gene37382:intron | 45.0% | |
| ! | ATCCTGAAGCATCAGAAGCT+AGG | - | chr8.4:74462396-74462415 | None:intergenic | 45.0% |
| !! | ACTGCGAAACGGACTAAAGT+TGG | + | chr8.4:74463304-74463323 | MS.gene37382:CDS | 45.0% |
| !! | ATTGTAGAGGCACTCAGAGA+AGG | - | chr8.4:74461695-74461714 | None:intergenic | 45.0% |
| !! | CTGCGAAACGGACTAAAGTT+GGG | + | chr8.4:74463305-74463324 | MS.gene37382:CDS | 45.0% |
| !!! | TTTAAGTTTATTTATTTTTT+TGG | + | chr8.4:74463249-74463268 | MS.gene37382:intron | 5.0% |
| AGCCTAGCTTCTGATGCTTC+AGG | + | chr8.4:74462391-74462410 | MS.gene37382:CDS | 50.0% | |
| AGGAAGATTGCGAGAAGTGG+AGG | + | chr8.4:74463643-74463662 | MS.gene37382:CDS | 50.0% | |
| AGGACGATGAGGAAGCAATC+AGG | + | chr8.4:74462038-74462057 | MS.gene37382:CDS | 50.0% | |
| CCCTCTTTCCCGTATTTGGA+AGG | - | chr8.4:74462796-74462815 | None:intergenic | 50.0% | |
| CTCGCAACGCCTTCCAAATA+CGG | + | chr8.4:74462784-74462803 | MS.gene37382:CDS | 50.0% | |
| CTGAAGTGAAGAAACCCGAG+AGG | + | chr8.4:74463169-74463188 | MS.gene37382:CDS | 50.0% | |
| CTTCCCCTCTTTCCCGTATT+TGG | - | chr8.4:74462800-74462819 | None:intergenic | 50.0% | |
| GAAGTGGAGGTCTTTGACTG+AGG | + | chr8.4:74463656-74463675 | MS.gene37382:CDS | 50.0% | |
| GCCTTCCAAATACGGGAAAG+AGG | + | chr8.4:74462792-74462811 | MS.gene37382:CDS | 50.0% | |
| GGAAATGCTGCAATACGGGA+AGG | - | chr8.4:74461674-74461693 | None:intergenic | 50.0% | |
| GGCAGAATATGAGAAGGCCA+TGG | + | chr8.4:74463824-74463843 | MS.gene37382:CDS | 50.0% | |
| GTTAACTCTTCCGTCTCTCC+TGG | - | chr8.4:74464029-74464048 | None:intergenic | 50.0% | |
| TCGCAACGCCTTCCAAATAC+GGG | + | chr8.4:74462785-74462804 | MS.gene37382:CDS | 50.0% | |
| GGGAAAAGAGGAGGATGGAG+AGG | + | chr8.4:74461925-74461944 | MS.gene37382:CDS | 55.0% | |
| ACTGCTTTGCGTGCTTCGGC+TGG | + | chr8.4:74461485-74461504 | MS.gene37382:CDS | 60.0% | |
| CTTCCGTCTCTCCTGGTGCA+GGG | - | chr8.4:74464022-74464041 | None:intergenic | 60.0% | |
| GATAAGGAAGCCCCTGCACC+AGG | + | chr8.4:74464008-74464027 | MS.gene37382:CDS | 60.0% | |
| TCTTCCGTCTCTCCTGGTGC+AGG | - | chr8.4:74464023-74464042 | None:intergenic | 60.0% | |
| TTCCGTCTCTCCTGGTGCAG+GGG | - | chr8.4:74464021-74464040 | None:intergenic | 60.0% | |
| AGCCCCTGCACCAGGAGAGA+CGG | + | chr8.4:74464016-74464035 | MS.gene37382:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 74461449 | 74464061 | 74461449 | ID=MS.gene37382 |
| chr8.4 | mRNA | 74461449 | 74464061 | 74461449 | ID=MS.gene37382.t1;Parent=MS.gene37382 |
| chr8.4 | exon | 74461449 | 74461579 | 74461449 | ID=MS.gene37382.t1.exon1;Parent=MS.gene37382.t1 |
| chr8.4 | CDS | 74461449 | 74461579 | 74461449 | ID=cds.MS.gene37382.t1;Parent=MS.gene37382.t1 |
| chr8.4 | exon | 74461734 | 74461812 | 74461734 | ID=MS.gene37382.t1.exon2;Parent=MS.gene37382.t1 |
| chr8.4 | CDS | 74461734 | 74461812 | 74461734 | ID=cds.MS.gene37382.t1;Parent=MS.gene37382.t1 |
| chr8.4 | exon | 74461923 | 74462111 | 74461923 | ID=MS.gene37382.t1.exon3;Parent=MS.gene37382.t1 |
| chr8.4 | CDS | 74461923 | 74462111 | 74461923 | ID=cds.MS.gene37382.t1;Parent=MS.gene37382.t1 |
| chr8.4 | exon | 74462202 | 74462283 | 74462202 | ID=MS.gene37382.t1.exon4;Parent=MS.gene37382.t1 |
| chr8.4 | CDS | 74462202 | 74462283 | 74462202 | ID=cds.MS.gene37382.t1;Parent=MS.gene37382.t1 |
| chr8.4 | exon | 74462377 | 74462471 | 74462377 | ID=MS.gene37382.t1.exon5;Parent=MS.gene37382.t1 |
| chr8.4 | CDS | 74462377 | 74462471 | 74462377 | ID=cds.MS.gene37382.t1;Parent=MS.gene37382.t1 |
| chr8.4 | exon | 74462721 | 74462854 | 74462721 | ID=MS.gene37382.t1.exon6;Parent=MS.gene37382.t1 |
| chr8.4 | CDS | 74462721 | 74462854 | 74462721 | ID=cds.MS.gene37382.t1;Parent=MS.gene37382.t1 |
| chr8.4 | exon | 74462976 | 74463037 | 74462976 | ID=MS.gene37382.t1.exon7;Parent=MS.gene37382.t1 |
| chr8.4 | CDS | 74462976 | 74463037 | 74462976 | ID=cds.MS.gene37382.t1;Parent=MS.gene37382.t1 |
| chr8.4 | exon | 74463145 | 74463190 | 74463145 | ID=MS.gene37382.t1.exon8;Parent=MS.gene37382.t1 |
| chr8.4 | CDS | 74463145 | 74463190 | 74463145 | ID=cds.MS.gene37382.t1;Parent=MS.gene37382.t1 |
| chr8.4 | exon | 74463282 | 74463392 | 74463282 | ID=MS.gene37382.t1.exon9;Parent=MS.gene37382.t1 |
| chr8.4 | CDS | 74463282 | 74463392 | 74463282 | ID=cds.MS.gene37382.t1;Parent=MS.gene37382.t1 |
| chr8.4 | exon | 74463479 | 74463536 | 74463479 | ID=MS.gene37382.t1.exon10;Parent=MS.gene37382.t1 |
| chr8.4 | CDS | 74463479 | 74463536 | 74463479 | ID=cds.MS.gene37382.t1;Parent=MS.gene37382.t1 |
| chr8.4 | exon | 74463636 | 74463680 | 74463636 | ID=MS.gene37382.t1.exon11;Parent=MS.gene37382.t1 |
| chr8.4 | CDS | 74463636 | 74463680 | 74463636 | ID=cds.MS.gene37382.t1;Parent=MS.gene37382.t1 |
| chr8.4 | exon | 74463786 | 74463878 | 74463786 | ID=MS.gene37382.t1.exon12;Parent=MS.gene37382.t1 |
| chr8.4 | CDS | 74463786 | 74463878 | 74463786 | ID=cds.MS.gene37382.t1;Parent=MS.gene37382.t1 |
| chr8.4 | exon | 74463972 | 74464061 | 74463972 | ID=MS.gene37382.t1.exon13;Parent=MS.gene37382.t1 |
| chr8.4 | CDS | 74463972 | 74464061 | 74463972 | ID=cds.MS.gene37382.t1;Parent=MS.gene37382.t1 |
| Gene Sequence |
| Protein sequence |
