Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37388.t1 | AET01618.1 | 68.7 | 259 | 34 | 4 | 1 | 225 | 1 | 246 | 2.40E-78 | 302.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37388.t1 | Q8LDF9 | 41.4 | 152 | 72 | 4 | 114 | 251 | 32 | 180 | 6.6e-16 | 86.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37388.t1 | G7LI68 | 68.7 | 259 | 34 | 4 | 1 | 225 | 1 | 246 | 1.8e-78 | 302.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene37388.t1 | TR | HMG |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37388.t1 | MTR_8g018100 | 74.131 | 259 | 20 | 4 | 1 | 225 | 1 | 246 | 1.33e-125 | 359 |
| MS.gene37388.t1 | MTR_1g115220 | 79.348 | 184 | 27 | 3 | 114 | 286 | 23 | 206 | 6.71e-85 | 254 |
| MS.gene37388.t1 | MTR_3g115580 | 53.933 | 89 | 41 | 0 | 172 | 260 | 32 | 120 | 4.77e-22 | 90.5 |
| MS.gene37388.t1 | MTR_5g024180 | 45.794 | 107 | 52 | 2 | 168 | 268 | 15 | 121 | 9.48e-20 | 84.0 |
| MS.gene37388.t1 | MTR_7g068280 | 54.054 | 74 | 34 | 0 | 181 | 254 | 47 | 120 | 4.89e-18 | 80.5 |
| MS.gene37388.t1 | MTR_8g073345 | 40.566 | 106 | 58 | 1 | 168 | 268 | 15 | 120 | 1.88e-17 | 77.8 |
| MS.gene37388.t1 | MTR_8g073345 | 40.566 | 106 | 58 | 1 | 168 | 268 | 15 | 120 | 2.02e-17 | 77.8 |
| MS.gene37388.t1 | MTR_4g094622 | 37.963 | 108 | 65 | 1 | 147 | 254 | 28 | 133 | 7.38e-14 | 68.2 |
| MS.gene37388.t1 | MTR_5g024180 | 43.902 | 82 | 41 | 2 | 192 | 268 | 3 | 84 | 4.95e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37388.t1 | AT5G23420 | 47.020 | 151 | 63 | 5 | 114 | 250 | 32 | 179 | 1.83e-27 | 107 |
| MS.gene37388.t1 | AT4G35570 | 46.739 | 92 | 49 | 0 | 176 | 267 | 25 | 116 | 6.13e-20 | 84.3 |
| MS.gene37388.t1 | AT4G35570 | 46.739 | 92 | 49 | 0 | 176 | 267 | 25 | 116 | 6.13e-20 | 84.3 |
| MS.gene37388.t1 | AT3G51880 | 44.954 | 109 | 54 | 2 | 159 | 267 | 28 | 130 | 1.49e-18 | 82.0 |
| MS.gene37388.t1 | AT3G51880 | 44.954 | 109 | 54 | 2 | 159 | 267 | 28 | 130 | 1.86e-18 | 81.3 |
| MS.gene37388.t1 | AT3G51880 | 39.552 | 134 | 75 | 2 | 134 | 267 | 3 | 130 | 2.66e-18 | 81.3 |
| MS.gene37388.t1 | AT3G51880 | 39.552 | 134 | 75 | 2 | 134 | 267 | 3 | 130 | 2.66e-18 | 81.3 |
| MS.gene37388.t1 | AT3G51880 | 39.552 | 134 | 75 | 2 | 134 | 267 | 3 | 130 | 2.66e-18 | 81.3 |
| MS.gene37388.t1 | AT1G20696 | 50.000 | 88 | 43 | 1 | 167 | 254 | 18 | 104 | 6.94e-17 | 76.3 |
| MS.gene37388.t1 | AT1G20693 | 48.193 | 83 | 42 | 1 | 173 | 254 | 25 | 107 | 1.33e-16 | 75.9 |
| MS.gene37388.t1 | AT1G20693 | 48.193 | 83 | 42 | 1 | 173 | 254 | 25 | 107 | 1.36e-16 | 75.9 |
| MS.gene37388.t1 | AT1G20693 | 48.193 | 83 | 42 | 1 | 173 | 254 | 25 | 107 | 1.70e-16 | 75.5 |
| MS.gene37388.t1 | AT1G20696 | 50.000 | 88 | 43 | 1 | 167 | 254 | 18 | 104 | 2.04e-16 | 75.1 |
| MS.gene37388.t1 | AT2G17560 | 44.086 | 93 | 51 | 1 | 176 | 267 | 25 | 117 | 2.98e-16 | 74.3 |
| MS.gene37388.t1 | AT2G17560 | 44.086 | 93 | 51 | 1 | 176 | 267 | 25 | 117 | 3.28e-16 | 74.3 |
| MS.gene37388.t1 | AT2G17560 | 44.086 | 93 | 51 | 1 | 176 | 267 | 25 | 117 | 3.28e-16 | 74.3 |
| MS.gene37388.t1 | AT1G20696 | 50.000 | 88 | 43 | 1 | 167 | 254 | 18 | 104 | 5.13e-16 | 74.3 |
| MS.gene37388.t1 | AT2G34450 | 40.000 | 85 | 48 | 1 | 186 | 267 | 64 | 148 | 2.95e-12 | 63.9 |
| MS.gene37388.t1 | AT2G34450 | 40.000 | 85 | 48 | 1 | 186 | 267 | 64 | 148 | 2.95e-12 | 63.9 |
| MS.gene37388.t1 | AT2G34450 | 40.000 | 85 | 48 | 1 | 186 | 267 | 64 | 148 | 2.95e-12 | 63.9 |
| MS.gene37388.t1 | AT2G34450 | 40.698 | 86 | 47 | 2 | 186 | 267 | 64 | 149 | 8.44e-11 | 59.7 |
Find 64 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCAAAGCTTCTTGGTTAA+TGG | 0.174747 | 8.4:-74365181 | None:intergenic |
| CTAGTTGAATCAAAGCTTCT+TGG | 0.226973 | 8.4:-74365188 | None:intergenic |
| GGCCAAAGCACTGCCATCTT+TGG | 0.263194 | 8.4:-74365220 | None:intergenic |
| GAGGAGTAGTGGTAGCATTT+TGG | 0.290072 | 8.4:+74366438 | MS.gene37388:CDS |
| AAGCCTCCTGCTGCTGTTCA+AGG | 0.291500 | 8.4:-74365042 | None:intergenic |
| TCATAAACTTTATCCCAAAA+AGG | 0.297956 | 8.4:-74366181 | None:intergenic |
| TAAAGTTGGGAAAGGGAAAA+AGG | 0.356731 | 8.4:+74365704 | MS.gene37388:CDS |
| TGTTGACCTTGTTTGCTTCA+AGG | 0.365012 | 8.4:-74364748 | None:intergenic |
| TCTTCAGGATCAGCGTTAAT+CGG | 0.386915 | 8.4:-74364773 | None:intergenic |
| TTGCAGACGAGGAGGAGATC+GGG | 0.399207 | 8.4:+74364828 | MS.gene37388:CDS |
| GCCAAAATCAAAATGAATCT+TGG | 0.400053 | 8.4:+74365409 | MS.gene37388:CDS |
| AGCCTCCTGCTGCTGTTCAA+GGG | 0.417728 | 8.4:-74365041 | None:intergenic |
| TTGATTCAAAGGATGTTAAG+AGG | 0.429062 | 8.4:+74365900 | MS.gene37388:CDS |
| ATGGCAGTGCTTTGGCCAAA+TGG | 0.432986 | 8.4:+74365226 | MS.gene37388:CDS |
| AAAAGAACCAACTGTGAAAC+GGG | 0.433899 | 8.4:+74365680 | MS.gene37388:CDS |
| CTTCGACCTCTCCTGGTGTA+GGG | 0.444977 | 8.4:-74366405 | None:intergenic |
| ACTTGATTTCTCTGTTGAAA+CGG | 0.447683 | 8.4:+74366471 | MS.gene37388:CDS |
| GCCTCCTGCTGCTGTTCAAG+GGG | 0.455833 | 8.4:-74365040 | None:intergenic |
| GGAAGGCCAATCTGATGATA+AGG | 0.467371 | 8.4:+74366378 | MS.gene37388:CDS |
| GGAAGCTAATCTTGATTCAA+AGG | 0.468919 | 8.4:+74365889 | MS.gene37388:CDS |
| TGTAACTCTTCGACCTCTCC+TGG | 0.473741 | 8.4:-74366412 | None:intergenic |
| TCTTCGACCTCTCCTGGTGT+AGG | 0.479230 | 8.4:-74366406 | None:intergenic |
| GGGCTTCCTTATCATCAGAT+TGG | 0.482008 | 8.4:-74366384 | None:intergenic |
| CAAAAGAACCAACTGTGAAA+CGG | 0.482796 | 8.4:+74365679 | MS.gene37388:CDS |
| GAATCAAGAGGGATCTGATA+AGG | 0.485382 | 8.4:+74366357 | MS.gene37388:intron |
| CTGTGAAACGGGCTAAAGTT+GGG | 0.495371 | 8.4:+74365691 | MS.gene37388:CDS |
| ACTGTGAAACGGGCTAAAGT+TGG | 0.495403 | 8.4:+74365690 | MS.gene37388:CDS |
| AACTAGGTTGGTAAGGAAGA+TGG | 0.502121 | 8.4:+74366016 | MS.gene37388:intron |
| ACTTTAGCCCGTTTCACAGT+TGG | 0.507638 | 8.4:-74365687 | None:intergenic |
| TGCCAAAGATGGCAGTGCTT+TGG | 0.509854 | 8.4:+74365218 | MS.gene37388:CDS |
| TTTGCAGACGAGGAGGAGAT+CGG | 0.510308 | 8.4:+74364827 | MS.gene37388:CDS |
| TAACCGTAGGTTTGCAGACG+AGG | 0.521173 | 8.4:+74364817 | MS.gene37388:CDS |
| CTAGCAAAATGTGCCAAAGA+TGG | 0.522404 | 8.4:+74365207 | MS.gene37388:CDS |
| GGATAAAGTTTATGAACTCA+TGG | 0.536760 | 8.4:+74366189 | MS.gene37388:CDS |
| ATGAAAACAAAGAAATCAGT+TGG | 0.551566 | 8.4:-74365756 | None:intergenic |
| CCTCCTGCTGCTGTTCAAGG+GGG | 0.558467 | 8.4:-74365039 | None:intergenic |
| GAGTTACAGATGAGGAGTAG+TGG | 0.559634 | 8.4:+74366427 | MS.gene37388:CDS |
| TGAAATAGAAGATCCTCGAC+AGG | 0.569010 | 8.4:+74364925 | MS.gene37388:CDS |
| GATAAGGAAGCCCCTACACC+AGG | 0.573340 | 8.4:+74366394 | MS.gene37388:CDS |
| AGCAGTATTATACAATTCCA+TGG | 0.577022 | 8.4:-74366227 | None:intergenic |
| GAAGTGGAAGTCTTTGACTG+AGG | 0.580242 | 8.4:+74366042 | MS.gene37388:CDS |
| TTCGACCTCTCCTGGTGTAG+GGG | 0.580908 | 8.4:-74366404 | None:intergenic |
| AAACGGGCTAAAGTTGGGAA+AGG | 0.581260 | 8.4:+74365696 | MS.gene37388:CDS |
| GTAAGGAAGATGGTGAGAAG+TGG | 0.583888 | 8.4:+74366026 | MS.gene37388:CDS |
| TGATTCAAAGGATGTTAAGA+GGG | 0.586389 | 8.4:+74365901 | MS.gene37388:CDS |
| CCTCCTCGTCTGCAAACCTA+CGG | 0.601229 | 8.4:-74364820 | None:intergenic |
| ATATAAGAGCATACCTGTCG+AGG | 0.602504 | 8.4:-74364938 | None:intergenic |
| CTCCTGCTGCTGTTCAAGGG+GGG | 0.607441 | 8.4:-74365038 | None:intergenic |
| TGCAGACGAGGAGGAGATCG+GGG | 0.608031 | 8.4:+74364829 | MS.gene37388:CDS |
| AATGCTCCTTGAAGCAAACA+AGG | 0.617773 | 8.4:+74364742 | MS.gene37388:CDS |
| CAAGAGGGATCTGATAAGGA+AGG | 0.618030 | 8.4:+74366361 | MS.gene37388:CDS |
| AACGGGCTAAAGTTGGGAAA+GGG | 0.618034 | 8.4:+74365697 | MS.gene37388:CDS |
| AAATACTCGAATTTAACCGT+AGG | 0.618437 | 8.4:+74364804 | MS.gene37388:CDS |
| GGCAGAATATGAGAAGGCCA+TGG | 0.621119 | 8.4:+74366210 | MS.gene37388:CDS |
| TATGTTTGTTCAGAATCAAG+AGG | 0.626066 | 8.4:+74366345 | MS.gene37388:intron |
| ATGTTTGTTCAGAATCAAGA+GGG | 0.634119 | 8.4:+74366346 | MS.gene37388:intron |
| AGCCAGACTACACAAAACTC+TGG | 0.634663 | 8.4:+74364711 | MS.gene37388:CDS |
| GGAAGCCCCTACACCAGGAG+AGG | 0.635398 | 8.4:+74366399 | MS.gene37388:CDS |
| AGGTCGAAGAGTTACAGATG+AGG | 0.646737 | 8.4:+74366419 | MS.gene37388:CDS |
| CCGTAGGTTTGCAGACGAGG+AGG | 0.664679 | 8.4:+74364820 | MS.gene37388:CDS |
| ACTCATGGCAGAATATGAGA+AGG | 0.674706 | 8.4:+74366204 | MS.gene37388:CDS |
| GAGATCGGGGAATCTAAATG+TGG | 0.687874 | 8.4:+74364842 | MS.gene37388:CDS |
| AAAGGTTAAGGATTCTAATG+CGG | 0.688426 | 8.4:+74365722 | MS.gene37388:CDS |
| CTGAAGTGAAGAAACCCGAG+AGG | 0.719762 | 8.4:+74365562 | MS.gene37388:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATTTGATTTTATTTAATT+TGG | + | chr8.4:74365507-74365526 | MS.gene37388:intron | 10.0% |
| !!! | TTGATAATAATTACTAATTA+GGG | - | chr8.4:74365458-74365477 | None:intergenic | 10.0% |
| !!! | TTTGATAATAATTACTAATT+AGG | - | chr8.4:74365459-74365478 | None:intergenic | 10.0% |
| !! | AATATTCACAAACTAAAATT+GGG | - | chr8.4:74365600-74365619 | None:intergenic | 15.0% |
| !!! | TTATTTTTTTGGAATTTTGT+AGG | + | chr8.4:74365646-74365665 | MS.gene37388:intron | 15.0% |
| !! | ATATTCACAAACTAAAATTG+GGG | - | chr8.4:74365599-74365618 | None:intergenic | 20.0% |
| !! | CAATATTCACAAACTAAAAT+TGG | - | chr8.4:74365601-74365620 | None:intergenic | 20.0% |
| !! | TGATATGGTTAAAATTGTTT+AGG | + | chr8.4:74366150-74366169 | MS.gene37388:intron | 20.0% |
| !! | TTGTTTGATTAACTTATCTA+AGG | + | chr8.4:74365960-74365979 | MS.gene37388:intron | 20.0% |
| !!! | AAATGAAGTATGTTTTCTTT+TGG | + | chr8.4:74366258-74366277 | MS.gene37388:intron | 20.0% |
| !!! | AATGAAGTATGTTTTCTTTT+GGG | + | chr8.4:74366259-74366278 | MS.gene37388:intron | 20.0% |
| !!! | ATTTCTTTGTTTTCATGTAA+GGG | + | chr8.4:74365763-74365782 | MS.gene37388:intron | 20.0% |
| !!! | CAATTTTAGTTTGTGAATAT+TGG | + | chr8.4:74365599-74365618 | MS.gene37388:intron | 20.0% |
| ! | ATGAAAACAAAGAAATCAGT+TGG | - | chr8.4:74365759-74365778 | None:intergenic | 25.0% |
| ! | TCATAAACTTTATCCCAAAA+AGG | - | chr8.4:74366184-74366203 | None:intergenic | 25.0% |
| ! | TTACATGTATTGCAAAAACT+AGG | + | chr8.4:74366000-74366019 | MS.gene37388:intron | 25.0% |
| ! | TTGTTTAGTTGAATTGTGTT+TGG | + | chr8.4:74365935-74365954 | MS.gene37388:intron | 25.0% |
| !! | AGTATTTTCTTTTCTTCTTC+AGG | - | chr8.4:74364791-74364810 | None:intergenic | 25.0% |
| !! | TGAGTTTAGAAAGACTTTTA+AGG | + | chr8.4:74365868-74365887 | MS.gene37388:CDS | 25.0% |
| !! | TTTTATTACAACGTTTGCTT+CGG | + | chr8.4:74366072-74366091 | MS.gene37388:intron | 25.0% |
| !!! | ACCAAGATTCATTTTGATTT+TGG | - | chr8.4:74365413-74365432 | None:intergenic | 25.0% |
| !!! | GATTTCTTTGTTTTCATGTA+AGG | + | chr8.4:74365762-74365781 | MS.gene37388:intron | 25.0% |
| !!! | TAGATTTTGACGAAATAGAT+GGG | + | chr8.4:74364885-74364904 | MS.gene37388:CDS | 25.0% |
| AAAGGTTAAGGATTCTAATG+CGG | + | chr8.4:74365722-74365741 | MS.gene37388:CDS | 30.0% | |
| AAATACTCGAATTTAACCGT+AGG | + | chr8.4:74364804-74364823 | MS.gene37388:CDS | 30.0% | |
| AATCAAAGCTTCTTGGTTAA+TGG | - | chr8.4:74365184-74365203 | None:intergenic | 30.0% | |
| AATTTCTCCATCAACATGAT+GGG | - | chr8.4:74365130-74365149 | None:intergenic | 30.0% | |
| ACTTGATTTCTCTGTTGAAA+CGG | + | chr8.4:74366471-74366490 | MS.gene37388:CDS | 30.0% | |
| AGCAGTATTATACAATTCCA+TGG | - | chr8.4:74366230-74366249 | None:intergenic | 30.0% | |
| ATGTATTGCAAAAACTAGGT+TGG | + | chr8.4:74366004-74366023 | MS.gene37388:intron | 30.0% | |
| ATGTTTGTTCAGAATCAAGA+GGG | + | chr8.4:74366346-74366365 | MS.gene37388:intron | 30.0% | |
| GCCAAAATCAAAATGAATCT+TGG | + | chr8.4:74365409-74365428 | MS.gene37388:CDS | 30.0% | |
| GGATAAAGTTTATGAACTCA+TGG | + | chr8.4:74366189-74366208 | MS.gene37388:CDS | 30.0% | |
| TATGTTTGTTCAGAATCAAG+AGG | + | chr8.4:74366345-74366364 | MS.gene37388:intron | 30.0% | |
| TGATTCAAAGGATGTTAAGA+GGG | + | chr8.4:74365901-74365920 | MS.gene37388:CDS | 30.0% | |
| TTGATTCAAAGGATGTTAAG+AGG | + | chr8.4:74365900-74365919 | MS.gene37388:CDS | 30.0% | |
| TTGTTTATTATCGAAGATGC+CGG | + | chr8.4:74365015-74365034 | MS.gene37388:intron | 30.0% | |
| !! | ACAGTTGGTTCTTTTGAATT+TGG | - | chr8.4:74365675-74365694 | None:intergenic | 30.0% |
| !! | AGATTTTGACGAAATAGATG+GGG | + | chr8.4:74364886-74364905 | MS.gene37388:CDS | 30.0% |
| !! | GTAGATTTTGACGAAATAGA+TGG | + | chr8.4:74364884-74364903 | MS.gene37388:CDS | 30.0% |
| !!! | GTTTTGGTTCTATAGTTTGA+GGG | + | chr8.4:74365813-74365832 | MS.gene37388:intron | 30.0% |
| !!! | TCATTTTGATTTTGGCTTCA+AGG | - | chr8.4:74365405-74365424 | None:intergenic | 30.0% |
| !!! | TGTGCTGTTTTGTAATGTTT+TGG | + | chr8.4:74365797-74365816 | MS.gene37388:intron | 30.0% |
| !!! | TGTTTTGGTTCTATAGTTTG+AGG | + | chr8.4:74365812-74365831 | MS.gene37388:intron | 30.0% |
| AAAAGAACCAACTGTGAAAC+GGG | + | chr8.4:74365680-74365699 | MS.gene37388:CDS | 35.0% | |
| AGAAATTCTGACGAAAGTCT+TGG | + | chr8.4:74365143-74365162 | MS.gene37388:intron | 35.0% | |
| CAAAAGAACCAACTGTGAAA+CGG | + | chr8.4:74365679-74365698 | MS.gene37388:CDS | 35.0% | |
| CTAGTTGAATCAAAGCTTCT+TGG | - | chr8.4:74365191-74365210 | None:intergenic | 35.0% | |
| CTTATGTGATGCTGATCTAA+TGG | + | chr8.4:74366125-74366144 | MS.gene37388:intron | 35.0% | |
| GAATTTCTCCATCAACATGA+TGG | - | chr8.4:74365131-74365150 | None:intergenic | 35.0% | |
| GCTGATCTAATGGTATGATA+TGG | + | chr8.4:74366135-74366154 | MS.gene37388:intron | 35.0% | |
| GGAAGCTAATCTTGATTCAA+AGG | + | chr8.4:74365889-74365908 | MS.gene37388:CDS | 35.0% | |
| TAAAGTTGGGAAAGGGAAAA+AGG | + | chr8.4:74365704-74365723 | MS.gene37388:CDS | 35.0% | |
| TCACAAATCTTCTTTGATGC+AGG | - | chr8.4:74365105-74365124 | None:intergenic | 35.0% | |
| ! | AAAAAAGAGTGCGAACGAAA+TGG | - | chr8.4:74365271-74365290 | None:intergenic | 35.0% |
| ! | TTAGGAGAAGAAGCCTTTTT+GGG | + | chr8.4:74366168-74366187 | MS.gene37388:intron | 35.0% |
| ! | TTTAGGAGAAGAAGCCTTTT+TGG | + | chr8.4:74366167-74366186 | MS.gene37388:intron | 35.0% |
| !! | TTGCAAAAACTAGGTTGGTA+AGG | + | chr8.4:74366009-74366028 | MS.gene37388:intron | 35.0% |
| !!! | GTTTGAGGGTTTTAGTTGAT+TGG | + | chr8.4:74365827-74365846 | MS.gene37388:intron | 35.0% |
| AATGCTCCTTGAAGCAAACA+AGG | + | chr8.4:74364742-74364761 | MS.gene37388:CDS | 40.0% | |
| ACTCATGGCAGAATATGAGA+AGG | + | chr8.4:74366204-74366223 | MS.gene37388:CDS | 40.0% | |
| CTAGCAAAATGTGCCAAAGA+TGG | + | chr8.4:74365207-74365226 | MS.gene37388:CDS | 40.0% | |
| GAAGAGAAGAACGAACCATT+TGG | - | chr8.4:74365244-74365263 | None:intergenic | 40.0% | |
| GAATCAAGAGGGATCTGATA+AGG | + | chr8.4:74366357-74366376 | MS.gene37388:intron | 40.0% | |
| GGGAAAAAATTTCACCTCTC+GGG | - | chr8.4:74365579-74365598 | None:intergenic | 40.0% | |
| GGGGAAAAAATTTCACCTCT+CGG | - | chr8.4:74365580-74365599 | None:intergenic | 40.0% | |
| TCTTCAGGATCAGCGTTAAT+CGG | - | chr8.4:74364776-74364795 | None:intergenic | 40.0% | |
| TGAAATAGAAGATCCTCGAC+AGG | + | chr8.4:74364925-74364944 | MS.gene37388:CDS | 40.0% | |
| TGGGAAAGGGAAAAAGGTTA+AGG | + | chr8.4:74365710-74365729 | MS.gene37388:CDS | 40.0% | |
| ! | ATATAAGAGCATACCTGTCG+AGG | - | chr8.4:74364941-74364960 | None:intergenic | 40.0% |
| ! | TGTTGACCTTGTTTGCTTCA+AGG | - | chr8.4:74364751-74364770 | None:intergenic | 40.0% |
| !! | AACTAGGTTGGTAAGGAAGA+TGG | + | chr8.4:74366016-74366035 | MS.gene37388:intron | 40.0% |
| !! | ACGTTTGCTTCGGTTTTGAT+TGG | + | chr8.4:74366082-74366101 | MS.gene37388:intron | 40.0% |
| !! | GATTGGTTTGATTCGTTGCA+GGG | + | chr8.4:74365844-74365863 | MS.gene37388:intron | 40.0% |
| !! | TGATTGGTTTGATTCGTTGC+AGG | + | chr8.4:74365843-74365862 | MS.gene37388:intron | 40.0% |
| !!! | GCTTCGGTTTTGATTGGATT+TGG | + | chr8.4:74366088-74366107 | MS.gene37388:intron | 40.0% |
| !!! | TTTTCCCTCTTTTCTGAAGC+TGG | + | chr8.4:74366317-74366336 | MS.gene37388:intron | 40.0% |
| ACTTTAGCCCGTTTCACAGT+TGG | - | chr8.4:74365690-74365709 | None:intergenic | 45.0% | |
| AGCACCAGCTTCAGAAAAGA+GGG | - | chr8.4:74366324-74366343 | None:intergenic | 45.0% | |
| AGCCAGACTACACAAAACTC+TGG | + | chr8.4:74364711-74364730 | MS.gene37388:CDS | 45.0% | |
| AGGTCGAAGAGTTACAGATG+AGG | + | chr8.4:74366419-74366438 | MS.gene37388:CDS | 45.0% | |
| CAAGAGGGATCTGATAAGGA+AGG | + | chr8.4:74366361-74366380 | MS.gene37388:CDS | 45.0% | |
| GAAGTGGAAGTCTTTGACTG+AGG | + | chr8.4:74366042-74366061 | MS.gene37388:CDS | 45.0% | |
| GAGATCGGGGAATCTAAATG+TGG | + | chr8.4:74364842-74364861 | MS.gene37388:CDS | 45.0% | |
| GAGTTACAGATGAGGAGTAG+TGG | + | chr8.4:74366427-74366446 | MS.gene37388:CDS | 45.0% | |
| GGAAGGCCAATCTGATGATA+AGG | + | chr8.4:74366378-74366397 | MS.gene37388:CDS | 45.0% | |
| GGGCTTCCTTATCATCAGAT+TGG | - | chr8.4:74366387-74366406 | None:intergenic | 45.0% | |
| GTAAGGAAGATGGTGAGAAG+TGG | + | chr8.4:74366026-74366045 | MS.gene37388:CDS | 45.0% | |
| TAGCACCAGCTTCAGAAAAG+AGG | - | chr8.4:74366325-74366344 | None:intergenic | 45.0% | |
| TGTGATGCCCATCATGTTGA+TGG | + | chr8.4:74365120-74365139 | MS.gene37388:intron | 45.0% | |
| ! | GAGGAGTAGTGGTAGCATTT+TGG | + | chr8.4:74366438-74366457 | MS.gene37388:CDS | 45.0% |
| !! | AAACGGGCTAAAGTTGGGAA+AGG | + | chr8.4:74365696-74365715 | MS.gene37388:CDS | 45.0% |
| !! | AACGGGCTAAAGTTGGGAAA+GGG | + | chr8.4:74365697-74365716 | MS.gene37388:CDS | 45.0% |
| !! | ACTGTGAAACGGGCTAAAGT+TGG | + | chr8.4:74365690-74365709 | MS.gene37388:CDS | 45.0% |
| !! | CTGTGAAACGGGCTAAAGTT+GGG | + | chr8.4:74365691-74365710 | MS.gene37388:CDS | 45.0% |
| !! | GTCCAGAGTTTTGTGTAGTC+TGG | - | chr8.4:74364716-74364735 | None:intergenic | 45.0% |
| !!! | TTTAAGTTTATTTATTTTTT+TGG | + | chr8.4:74365635-74365654 | MS.gene37388:intron | 5.0% |
| ATGGCAGTGCTTTGGCCAAA+TGG | + | chr8.4:74365226-74365245 | MS.gene37388:CDS | 50.0% | |
| CTGAAGTGAAGAAACCCGAG+AGG | + | chr8.4:74365562-74365581 | MS.gene37388:CDS | 50.0% | |
| GGCAGAATATGAGAAGGCCA+TGG | + | chr8.4:74366210-74366229 | MS.gene37388:CDS | 50.0% | |
| TAACCGTAGGTTTGCAGACG+AGG | + | chr8.4:74364817-74364836 | MS.gene37388:CDS | 50.0% | |
| TGCCAAAGATGGCAGTGCTT+TGG | + | chr8.4:74365218-74365237 | MS.gene37388:CDS | 50.0% | |
| TGTAACTCTTCGACCTCTCC+TGG | - | chr8.4:74366415-74366434 | None:intergenic | 50.0% | |
| TTTGCAGACGAGGAGGAGAT+CGG | + | chr8.4:74364827-74364846 | MS.gene37388:CDS | 50.0% | |
| AAGCCTCCTGCTGCTGTTCA+AGG | - | chr8.4:74365045-74365064 | None:intergenic | 55.0% | |
| AGCCTCCTGCTGCTGTTCAA+GGG | - | chr8.4:74365044-74365063 | None:intergenic | 55.0% | |
| CCTCCTCGTCTGCAAACCTA+CGG | - | chr8.4:74364823-74364842 | None:intergenic | 55.0% | |
| CTTCGACCTCTCCTGGTGTA+GGG | - | chr8.4:74366408-74366427 | None:intergenic | 55.0% | |
| GATAAGGAAGCCCCTACACC+AGG | + | chr8.4:74366394-74366413 | MS.gene37388:CDS | 55.0% | |
| TCTTCGACCTCTCCTGGTGT+AGG | - | chr8.4:74366409-74366428 | None:intergenic | 55.0% | |
| TTCGACCTCTCCTGGTGTAG+GGG | - | chr8.4:74366407-74366426 | None:intergenic | 55.0% | |
| TTGCAGACGAGGAGGAGATC+GGG | + | chr8.4:74364828-74364847 | MS.gene37388:CDS | 55.0% | |
| !! | GGCCAAAGCACTGCCATCTT+TGG | - | chr8.4:74365223-74365242 | None:intergenic | 55.0% |
| CCGTAGGTTTGCAGACGAGG+AGG | + | chr8.4:74364820-74364839 | MS.gene37388:CDS | 60.0% | |
| CCTCCTGCTGCTGTTCAAGG+GGG | - | chr8.4:74365042-74365061 | None:intergenic | 60.0% | |
| CTCCTGCTGCTGTTCAAGGG+GGG | - | chr8.4:74365041-74365060 | None:intergenic | 60.0% | |
| GCCTCCTGCTGCTGTTCAAG+GGG | - | chr8.4:74365043-74365062 | None:intergenic | 60.0% | |
| TGCAGACGAGGAGGAGATCG+GGG | + | chr8.4:74364829-74364848 | MS.gene37388:CDS | 60.0% | |
| CCCCCTTGAACAGCAGCAGG+AGG | + | chr8.4:74365039-74365058 | MS.gene37388:CDS | 65.0% | |
| GGAAGCCCCTACACCAGGAG+AGG | + | chr8.4:74366399-74366418 | MS.gene37388:CDS | 65.0% | |
| TGCTGCTGTTCAAGGGGGGC+CGG | - | chr8.4:74365037-74365056 | None:intergenic | 65.0% | |
| GGCCCCCCTTGAACAGCAGC+AGG | + | chr8.4:74365036-74365055 | MS.gene37388:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 74364698 | 74366498 | 74364698 | ID=MS.gene37388 |
| chr8.4 | mRNA | 74364698 | 74366498 | 74364698 | ID=MS.gene37388.t1;Parent=MS.gene37388 |
| chr8.4 | exon | 74364698 | 74364946 | 74364698 | ID=MS.gene37388.t1.exon1;Parent=MS.gene37388.t1 |
| chr8.4 | CDS | 74364698 | 74364946 | 74364698 | ID=cds.MS.gene37388.t1;Parent=MS.gene37388.t1 |
| chr8.4 | exon | 74365031 | 74365078 | 74365031 | ID=MS.gene37388.t1.exon2;Parent=MS.gene37388.t1 |
| chr8.4 | CDS | 74365031 | 74365078 | 74365031 | ID=cds.MS.gene37388.t1;Parent=MS.gene37388.t1 |
| chr8.4 | exon | 74365177 | 74365247 | 74365177 | ID=MS.gene37388.t1.exon3;Parent=MS.gene37388.t1 |
| chr8.4 | CDS | 74365177 | 74365247 | 74365177 | ID=cds.MS.gene37388.t1;Parent=MS.gene37388.t1 |
| chr8.4 | exon | 74365369 | 74365430 | 74365369 | ID=MS.gene37388.t1.exon4;Parent=MS.gene37388.t1 |
| chr8.4 | CDS | 74365369 | 74365430 | 74365369 | ID=cds.MS.gene37388.t1;Parent=MS.gene37388.t1 |
| chr8.4 | exon | 74365538 | 74365583 | 74365538 | ID=MS.gene37388.t1.exon5;Parent=MS.gene37388.t1 |
| chr8.4 | CDS | 74365538 | 74365583 | 74365538 | ID=cds.MS.gene37388.t1;Parent=MS.gene37388.t1 |
| chr8.4 | exon | 74365668 | 74365778 | 74365668 | ID=MS.gene37388.t1.exon6;Parent=MS.gene37388.t1 |
| chr8.4 | CDS | 74365668 | 74365778 | 74365668 | ID=cds.MS.gene37388.t1;Parent=MS.gene37388.t1 |
| chr8.4 | exon | 74365865 | 74365922 | 74365865 | ID=MS.gene37388.t1.exon7;Parent=MS.gene37388.t1 |
| chr8.4 | CDS | 74365865 | 74365922 | 74365865 | ID=cds.MS.gene37388.t1;Parent=MS.gene37388.t1 |
| chr8.4 | exon | 74366022 | 74366066 | 74366022 | ID=MS.gene37388.t1.exon8;Parent=MS.gene37388.t1 |
| chr8.4 | CDS | 74366022 | 74366066 | 74366022 | ID=cds.MS.gene37388.t1;Parent=MS.gene37388.t1 |
| chr8.4 | exon | 74366172 | 74366264 | 74366172 | ID=MS.gene37388.t1.exon9;Parent=MS.gene37388.t1 |
| chr8.4 | CDS | 74366172 | 74366264 | 74366172 | ID=cds.MS.gene37388.t1;Parent=MS.gene37388.t1 |
| chr8.4 | exon | 74366358 | 74366498 | 74366358 | ID=MS.gene37388.t1.exon10;Parent=MS.gene37388.t1 |
| chr8.4 | CDS | 74366358 | 74366498 | 74366358 | ID=cds.MS.gene37388.t1;Parent=MS.gene37388.t1 |
| Gene Sequence |
| Protein sequence |
