AlfalfaGEDB | MS.gene37388

M. sativa cultivar XinJiangDaYe / MS.gene37388

KEGG: K25507
GO: -
PFAM: PF00505.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37388.t1	AET01618.1	68.7	259	34	4	1	225	1	246	2.40E-78	302.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37388.t1	Q8LDF9	41.4	152	72	4	114	251	32	180	6.6e-16	86.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37388.t1	G7LI68	68.7	259	34	4	1	225	1	246	1.8e-78	302.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene37388.t1	TR	HMG

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37388.t1	MTR_8g018100	74.131	259	20	4	1	225	1	246	1.33e-125	359
MS.gene37388.t1	MTR_1g115220	79.348	184	27	3	114	286	23	206	6.71e-85	254
MS.gene37388.t1	MTR_3g115580	53.933	89	41	0	172	260	32	120	4.77e-22	90.5
MS.gene37388.t1	MTR_5g024180	45.794	107	52	2	168	268	15	121	9.48e-20	84.0
MS.gene37388.t1	MTR_7g068280	54.054	74	34	0	181	254	47	120	4.89e-18	80.5
MS.gene37388.t1	MTR_8g073345	40.566	106	58	1	168	268	15	120	1.88e-17	77.8
MS.gene37388.t1	MTR_8g073345	40.566	106	58	1	168	268	15	120	2.02e-17	77.8
MS.gene37388.t1	MTR_4g094622	37.963	108	65	1	147	254	28	133	7.38e-14	68.2
MS.gene37388.t1	MTR_5g024180	43.902	82	41	2	192	268	3	84	4.95e-11	59.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37388.t1	AT5G23420	47.020	151	63	5	114	250	32	179	1.83e-27	107
MS.gene37388.t1	AT4G35570	46.739	92	49	0	176	267	25	116	6.13e-20	84.3
MS.gene37388.t1	AT4G35570	46.739	92	49	0	176	267	25	116	6.13e-20	84.3
MS.gene37388.t1	AT3G51880	44.954	109	54	2	159	267	28	130	1.49e-18	82.0
MS.gene37388.t1	AT3G51880	44.954	109	54	2	159	267	28	130	1.86e-18	81.3
MS.gene37388.t1	AT3G51880	39.552	134	75	2	134	267	3	130	2.66e-18	81.3
MS.gene37388.t1	AT3G51880	39.552	134	75	2	134	267	3	130	2.66e-18	81.3
MS.gene37388.t1	AT3G51880	39.552	134	75	2	134	267	3	130	2.66e-18	81.3
MS.gene37388.t1	AT1G20696	50.000	88	43	1	167	254	18	104	6.94e-17	76.3
MS.gene37388.t1	AT1G20693	48.193	83	42	1	173	254	25	107	1.33e-16	75.9

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Find 64 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACCAACTGTGAAAC+GGG	0.433899	8.4:+74365680	MS.gene37388:CDS
AAACGGGCTAAAGTTGGGAA+AGG	0.581260	8.4:+74365696	MS.gene37388:CDS
AAAGGTTAAGGATTCTAATG+CGG	0.688426	8.4:+74365722	MS.gene37388:CDS
AAATACTCGAATTTAACCGT+AGG	0.618437	8.4:+74364804	MS.gene37388:CDS
AACGGGCTAAAGTTGGGAAA+GGG	0.618034	8.4:+74365697	MS.gene37388:CDS
AACTAGGTTGGTAAGGAAGA+TGG	0.502121	8.4:+74366016	MS.gene37388:intron
AAGCCTCCTGCTGCTGTTCA+AGG	0.291500	8.4:-74365042	None:intergenic
AATCAAAGCTTCTTGGTTAA+TGG	0.174747	8.4:-74365181	None:intergenic
AATGCTCCTTGAAGCAAACA+AGG	0.617773	8.4:+74364742	MS.gene37388:CDS
ACTCATGGCAGAATATGAGA+AGG	0.674706	8.4:+74366204	MS.gene37388:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGTTAAGGATTCTAATG+CGG	+	chr8.4:74365722-74365741	MS.gene37388:CDS	30.0%
AAATACTCGAATTTAACCGT+AGG	+	chr8.4:74364804-74364823	MS.gene37388:CDS	30.0%
AATCAAAGCTTCTTGGTTAA+TGG	-	chr8.4:74365184-74365203	None:intergenic	30.0%
AATTTCTCCATCAACATGAT+GGG	-	chr8.4:74365130-74365149	None:intergenic	30.0%
ACTTGATTTCTCTGTTGAAA+CGG	+	chr8.4:74366471-74366490	MS.gene37388:CDS	30.0%
AGCAGTATTATACAATTCCA+TGG	-	chr8.4:74366230-74366249	None:intergenic	30.0%
ATGTATTGCAAAAACTAGGT+TGG	+	chr8.4:74366004-74366023	MS.gene37388:intron	30.0%
ATGTTTGTTCAGAATCAAGA+GGG	+	chr8.4:74366346-74366365	MS.gene37388:intron	30.0%
GCCAAAATCAAAATGAATCT+TGG	+	chr8.4:74365409-74365428	MS.gene37388:CDS	30.0%
GGATAAAGTTTATGAACTCA+TGG	+	chr8.4:74366189-74366208	MS.gene37388:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	74364698	74366498	74364698	ID=MS.gene37388
chr8.4	mRNA	74364698	74366498	74364698	ID=MS.gene37388.t1;Parent=MS.gene37388
chr8.4	exon	74364698	74364946	74364698	ID=MS.gene37388.t1.exon1;Parent=MS.gene37388.t1
chr8.4	CDS	74364698	74364946	74364698	ID=cds.MS.gene37388.t1;Parent=MS.gene37388.t1
chr8.4	exon	74365031	74365078	74365031	ID=MS.gene37388.t1.exon2;Parent=MS.gene37388.t1
chr8.4	CDS	74365031	74365078	74365031	ID=cds.MS.gene37388.t1;Parent=MS.gene37388.t1
chr8.4	exon	74365177	74365247	74365177	ID=MS.gene37388.t1.exon3;Parent=MS.gene37388.t1
chr8.4	CDS	74365177	74365247	74365177	ID=cds.MS.gene37388.t1;Parent=MS.gene37388.t1
chr8.4	exon	74365369	74365430	74365369	ID=MS.gene37388.t1.exon4;Parent=MS.gene37388.t1
chr8.4	CDS	74365369	74365430	74365369	ID=cds.MS.gene37388.t1;Parent=MS.gene37388.t1
chr8.4	exon	74365538	74365583	74365538	ID=MS.gene37388.t1.exon5;Parent=MS.gene37388.t1
chr8.4	CDS	74365538	74365583	74365538	ID=cds.MS.gene37388.t1;Parent=MS.gene37388.t1
chr8.4	exon	74365668	74365778	74365668	ID=MS.gene37388.t1.exon6;Parent=MS.gene37388.t1
chr8.4	CDS	74365668	74365778	74365668	ID=cds.MS.gene37388.t1;Parent=MS.gene37388.t1
chr8.4	exon	74365865	74365922	74365865	ID=MS.gene37388.t1.exon7;Parent=MS.gene37388.t1
chr8.4	CDS	74365865	74365922	74365865	ID=cds.MS.gene37388.t1;Parent=MS.gene37388.t1
chr8.4	exon	74366022	74366066	74366022	ID=MS.gene37388.t1.exon8;Parent=MS.gene37388.t1
chr8.4	CDS	74366022	74366066	74366022	ID=cds.MS.gene37388.t1;Parent=MS.gene37388.t1
chr8.4	exon	74366172	74366264	74366172	ID=MS.gene37388.t1.exon9;Parent=MS.gene37388.t1
chr8.4	CDS	74366172	74366264	74366172	ID=cds.MS.gene37388.t1;Parent=MS.gene37388.t1
chr8.4	exon	74366358	74366498	74366358	ID=MS.gene37388.t1.exon10;Parent=MS.gene37388.t1
chr8.4	CDS	74366358	74366498	74366358	ID=cds.MS.gene37388.t1;Parent=MS.gene37388.t1

Gene Sequence

>MS.gene37388

ATGGTGAAGATGCAGCCAGACTACACAAAACTCTGGACTTTTGAAATGCTCCTTGAAGCAAACAAGGTCAACACTCCGATTAACGCTGATCCTGAAGAAGAAAAGAAAATACTCGAATTTAACCGTAGGTTTGCAGACGAGGAGGAGATCGGGGAATCTAAATGTGGTTGTATGTTTGATGATGAAGTAGATTTTGACGAAATAGATGGGGAATCTAGAGATTTCAATGAAATAGAAGATCCTCGACAGGTATGCTCTTATATATTTTTATTTTTCGAAACAAAGCAAGTGCTATTGAATTTGTTGTTGATTTGATTTTGTTTATTATCGAAGATGCCGGCCCCCCTTGAACAGCAGCAGGAGGCTTGTGCAGTATACAATGTTTTTGAAGAAATGATTCAGTACCTGCATCAAAGAAGATTTGTGATGCCCATCATGTTGATGGAGAAATTCTGACGAAAGTCTTGGAGAATTTGAAGAATTCCATTAACCAAGAAGCTTTGATTCAACTAGCAAAATGTGCCAAAGATGGCAGTGCTTTGGCCAAATGGTTCGTTCTTCTCTTCTACACCATTTCGTTCGCACTCTTTTTTTCTCAAATTCTTCAATAGTTCATTTTTTTTATTTTCTAATTTTATGATTTTATTTTTTCTGTTTGTAAATATTTTCAGTGATGAGTGTAACATGCACATGCACAATTGTAGCCTTGAAGCCAAAATCAAAATGAATCTTGGTAATCAACGTTATTACTCATAAACCCTAATTAGTAATTATTATCAAAATCTAAATAACTGTGCTTGTTTATTTTCGTATTTGATTTTATTTAATTTGGTTGTTTAGATTCTCATGCTGTTGAGCAAGCTGCTGAAGTGAAGAAACCCGAGAGGTGAAATTTTTTCCCCAATTTTAGTTTGTGAATATTGGACTCTTGTTACTATTTAAGTTTATTTATTTTTTTGGAATTTTGTAGGAAGCCAAATTCAAAAGAACCAACTGTGAAACGGGCTAAAGTTGGGAAAGGGAAAAAGGTTAAGGATTCTAATGCGGCGAAGCGTTCACCAACTGATTTCTTTGTTTTCATGTAAGGGTTTGTTTTGTTTGTGCTGTTTTGTAATGTTTTGGTTCTATAGTTTGAGGGTTTTAGTTGATTGGTTTGATTCGTTGCAGGGATGAGTTTAGAAAGACTTTTAAGGAAGCTAATCTTGATTCAAAGGATGTTAAGAGGGTACTGAAAAATTTGTTTAGTTGAATTGTGTTTGGTATTGTTTGATTAACTTATCTAAGGATTATTTATTGATCATGTTACATGTATTGCAAAAACTAGGTTGGTAAGGAAGATGGTGAGAAGTGGAAGTCTTTGACTGAGGAAGTAAGTTTTATTACAACGTTTGCTTCGGTTTTGATTGGATTTGGTGCAAAGTGTTATGCTTATGTGATGCTGATCTAATGGTATGATATGGTTAAAATTGTTTAGGAGAAGAAGCCTTTTTGGGATAAAGTTTATGAACTCATGGCAGAATATGAGAAGGCCATGGAATTGTATAATACTGCTACTGCTGAAAATGAAGTATGTTTTCTTTTGGGCTTCTAAGTTTGTTTCATAATATGCTTTTGTTTAATTTTCCCTCTTTTCTGAAGCTGGTGCTATATGTTTGTTCAGAATCAAGAGGGATCTGATAAGGAAGGCCAATCTGATGATAAGGAAGCCCCTACACCAGGAGAGGTCGAAGAGTTACAGATGAGGAGTAGTGGTAGCATTTTGGTGCTCTTCAAACTTGATTTCTCTGTTGAAACGGCTTGA

Protein sequence

>MS.gene37388.t1

MVKMQPDYTKLWTFEMLLEANKVNTPINADPEEEKKILEFNRRFADEEEIGESKCGCMFDDEVDFDEIDGESRDFNEIEDPRQMPAPLEQQQEACAVYNNSINQEALIQLAKCAKDGSALAKCDECNMHMHNCSLEAKIKMNLDSHAVEQAAEVKKPERKPNSKEPTVKRAKVGKGKKVKDSNAAKRSPTDFFVFMDEFRKTFKEANLDSKDVKRVGKEDGEKWKSLTEEEKKPFWDKVYELMAEYEKAMELYNTATAENENQEGSDKEGQSDDKEAPTPGEVEELQMRSSGSILVLFKLDFSVETA