AlfalfaGEDB | MS.gene37428

M. sativa cultivar XinJiangDaYe / MS.gene37428

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37428.t1	XP_003603145.1	95	140	7	0	1	140	91	230	4.70E-72	280.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37428.t1	Q9LVS0	70.3	64	16	1	2	65	97	157	2.3e-19	96.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37428.t1	G7J7M5	95.0	140	7	0	1	140	91	230	3.4e-72	280.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene37428.t1	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37428.t1	MTR_3g104370	95.000	140	7	0	1	140	91	230	1.41e-95	275
MS.gene37428.t1	MTR_4g100630	54.545	88	36	2	2	88	96	180	8.51e-26	99.8
MS.gene37428.t1	MTR_6g092540	58.333	84	31	2	1	83	97	177	2.34e-25	97.8
MS.gene37428.t1	MTR_8g101650	61.111	72	25	1	1	72	105	173	2.13e-24	95.1
MS.gene37428.t1	MTR_2g100930	66.154	65	19	1	1	65	109	170	1.42e-23	94.4
MS.gene37428.t1	MTR_5g069710	49.485	97	42	2	1	97	132	221	2.91e-23	92.8
MS.gene37428.t1	MTR_3g462790	56.410	78	27	2	1	78	147	217	1.70e-21	88.2
MS.gene37428.t1	MTR_7g067080	67.797	59	19	0	1	59	140	198	1.74e-21	88.2
MS.gene37428.t1	MTR_4g111975	57.353	68	26	1	1	68	138	202	2.95e-21	87.4
MS.gene37428.t1	MTR_1g111830	69.492	59	16	1	2	60	125	181	3.31e-21	86.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37428.t1	AT5G56840	46.617	133	67	2	1	133	91	219	2.68e-25	96.7
MS.gene37428.t1	AT5G47390	55.952	84	25	2	2	85	97	168	5.50e-25	98.2
MS.gene37428.t1	AT2G38090	66.102	59	20	0	1	59	141	199	5.00e-22	89.4
MS.gene37428.t1	AT5G58900	66.102	59	20	0	1	59	141	199	5.51e-22	89.0
MS.gene37428.t1	AT5G01200	64.407	59	21	0	1	59	146	204	1.16e-21	87.8
MS.gene37428.t1	AT5G61620	60.000	70	25	1	2	71	109	175	1.17e-21	88.6
MS.gene37428.t1	AT1G70000	78.723	47	10	0	2	48	99	145	1.83e-21	87.4
MS.gene37428.t1	AT1G70000	78.723	47	10	0	2	48	99	145	1.83e-21	87.4
MS.gene37428.t1	AT1G49010	60.294	68	24	2	1	68	134	198	2.65e-21	87.8
MS.gene37428.t1	AT3G16350	75.000	48	12	0	1	48	137	184	4.49e-21	87.8

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Find 34 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATCATGTGCTCCTCCT+CGG	0.585344	3.4:-91410952	None:intergenic
AAATCAGGTGCTGCACTATG+AGG	0.523156	3.4:-91411403	None:intergenic
AATTTCTACTTCCACTTAGT+TGG	0.375503	3.4:-91411303	None:intergenic
ACACTACTGGTTAGCTTAAG+GGG	0.538405	3.4:-91411476	None:intergenic
AGAAGCTTGGGAAGGGTAAC+TGG	0.328316	3.4:+91410988	MS.gene37428:CDS
AGCTGCATAAGCCAACTAAG+TGG	0.584599	3.4:+91411292	MS.gene37428:CDS
AGGACTTGAGAAGCTTGGGA+AGG	0.598172	3.4:+91410980	MS.gene37428:CDS
AGGTATGCCGTGGACCGAGG+AGG	0.665092	3.4:+91410938	None:intergenic
ATCAGGTATGCCGTGGACCG+AGG	0.606863	3.4:+91410935	None:intergenic
ATGTGCTCCTCCTCGGTCCA+CGG	0.572063	3.4:-91410945	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTTCTACTTCCACTTAGT+TGG	-	chr3.4:91411306-91411325	None:intergenic	30.0%
CTCAACATTCAATACTGAAA+TGG	+	chr3.4:91411350-91411369	MS.gene37428:CDS	30.0%
CTTATGCAGCTGATATCATT+TGG	-	chr3.4:91411283-91411302	None:intergenic	35.0%
GAGCACATGATATTTCTTAG+AGG	+	chr3.4:91410960-91410979	MS.gene37428:CDS	35.0%
AAATATCATGTGCTCCTCCT+CGG	-	chr3.4:91410955-91410974	None:intergenic	40.0%
AACAACAAAAACACCAACCC+AGG	+	chr3.4:91411034-91411053	MS.gene37428:CDS	40.0%
GCCTAACTCTTCAACATCAA+CGG	+	chr3.4:91411372-91411391	MS.gene37428:CDS	40.0%
TCCGTTGATGTTGAAGAGTT+AGG	-	chr3.4:91411376-91411395	None:intergenic	40.0%
TTAGAGGACTTGAGAAGCTT+GGG	+	chr3.4:91410976-91410995	MS.gene37428:CDS	40.0%
AGCTGCATAAGCCAACTAAG+TGG	+	chr3.4:91411292-91411311	MS.gene37428:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	91410942	91411483	91410942	ID=MS.gene37428
chr3.4	mRNA	91410942	91411483	91410942	ID=MS.gene37428.t1;Parent=MS.gene37428
chr3.4	exon	91410942	91411142	91410942	ID=MS.gene37428.t1.exon1;Parent=MS.gene37428.t1
chr3.4	CDS	91410942	91411142	91410942	ID=cds.MS.gene37428.t1;Parent=MS.gene37428.t1
chr3.4	exon	91411247	91411483	91411247	ID=MS.gene37428.t1.exon2;Parent=MS.gene37428.t1
chr3.4	CDS	91411247	91411483	91411247	ID=cds.MS.gene37428.t1;Parent=MS.gene37428.t1

Gene Sequence

>MS.gene37428

ATGCCGTGGACCGAGGAGGAGCACATGATATTTCTTAGAGGACTTGAGAAGCTTGGGAAGGGTAACTGGAGAGGTATATCTAGAGATTTTGTAACAACAAAAACACCAACCCAGGTAGCTAGTCATGCACAAAAACATTTTCTCCGCCAGTCTCAGAATAGCTTGATCAATAGAAGAAAACACCATCTTAGCCTCCATTATGTAAGTAAATTAAAATATCTCTCCATATAAAAATAGTTACGTGCACAAACCTTACTTTAAACTTCTTTAATTTTCACCATCTTATTCTATATTTAATTTGGCAGGTGGGATGTGAAAAACCAGGAATAAATTTGACTCCAAATGATATCAGCTGCATAAGCCAACTAAGTGGAAGTAGAAATTTTCTTCCTCAGTGGCTTTCTCATCCTCAACATTCAATACTGAAATGGCCTAACTCTTCAACATCAACGGATTGTACTCCTCATAGTGCAGCACCTGATTTAGAACTCAAACTTGCAACTCCCATGCCATTAGAGCTAACAGAGGCATGCTCCCCTTAA

Protein sequence

>MS.gene37428.t1

MPWTEEEHMIFLRGLEKLGKGNWRGISRDFVTTKTPTQVASHAQKHFLRQSQNSLINRRKHHLSLHYVGCEKPGINLTPNDISCISQLSGSRNFLPQWLSHPQHSILKWPNSSTSTDCTPHSAAPDLELKLATPMPLELTEACSP