AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37449

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37449.t1 MTR_3g103590 84.818 303 27 5 1 294 12 304 2.44e-157 441
MS.gene37449.t1 MTR_1g017090 50.171 293 120 11 6 290 11 285 3.51e-76 234
MS.gene37449.t1 MTR_5g014890 60.736 163 57 4 124 286 114 269 8.76e-59 189
MS.gene37449.t1 MTR_7g093430 69.841 126 35 2 123 248 150 272 9.15e-56 182
MS.gene37449.t1 MTR_1g054285 50.746 201 89 4 50 250 78 268 4.40e-55 180
MS.gene37449.t1 MTR_4g097600 66.142 127 40 2 122 248 116 239 2.11e-53 175
MS.gene37449.t1 MTR_2g061030 65.116 129 42 2 124 252 191 316 4.73e-51 171
MS.gene37449.t1 MTR_4g100550 54.967 151 64 2 123 272 110 257 2.66e-50 167
MS.gene37449.t1 MTR_5g013010 52.326 172 77 3 95 265 99 266 4.14e-50 167
MS.gene37449.t1 MTR_8g006705 68.376 117 33 2 132 247 145 258 3.10e-49 166
MS.gene37449.t1 MTR_4g084750 55.118 127 54 1 124 247 56 182 3.59e-42 144
MS.gene37449.t1 MTR_2g038625 49.102 167 74 4 104 264 50 211 2.31e-39 137
MS.gene37449.t1 MTR_2g038580 49.102 167 74 4 104 264 50 211 2.31e-39 137
MS.gene37449.t1 MTR_4g126900 56.557 122 36 4 135 247 90 203 2.63e-32 119
MS.gene37449.t1 MTR_5g013010 69.355 62 19 0 123 184 126 187 9.87e-22 90.9
MS.gene37449.t1 MTR_1g061660 43.820 89 50 0 133 221 59 147 1.62e-18 82.8
MS.gene37449.t1 MTR_6g007647 48.352 91 47 0 130 220 30 120 2.19e-18 82.8
MS.gene37449.t1 MTR_6g007647 48.352 91 47 0 130 220 64 154 2.63e-18 83.2
MS.gene37449.t1 MTR_5g039000 40.351 114 58 2 121 224 62 175 5.22e-17 79.7
MS.gene37449.t1 MTR_7g010020 40.952 105 55 1 123 220 70 174 6.39e-17 79.3
MS.gene37449.t1 MTR_7g103340 39.604 101 60 1 121 220 50 150 2.28e-16 77.0
MS.gene37449.t1 MTR_5g038280 45.745 94 44 1 133 219 87 180 2.28e-16 78.6
MS.gene37449.t1 MTR_4g107650 37.879 132 77 1 89 220 56 182 3.94e-16 77.8
MS.gene37449.t1 MTR_8g469430 46.809 94 43 1 133 219 89 182 5.58e-16 76.6
MS.gene37449.t1 MTR_8g468210 40.000 100 57 1 124 220 65 164 9.77e-16 75.9
MS.gene37449.t1 MTR_3g086790 45.361 97 46 1 131 220 58 154 9.91e-16 76.3
MS.gene37449.t1 MTR_3g080100 36.567 134 72 3 133 259 20 147 6.14e-15 72.8
MS.gene37449.t1 MTR_3g080100 36.567 134 72 3 133 259 59 186 7.27e-15 73.2
MS.gene37449.t1 MTR_6g011610 44.681 94 45 1 133 219 96 189 8.81e-15 73.2
MS.gene37449.t1 MTR_8g089895 40.909 110 61 1 121 226 42 151 1.37e-14 73.2
MS.gene37449.t1 MTR_6g011610 44.681 94 45 1 133 219 77 170 1.66e-14 72.0
MS.gene37449.t1 MTR_8g026960 37.000 100 60 1 137 236 38 134 1.58e-12 66.2
MS.gene37449.t1 MTR_3g092150 43.529 85 48 0 136 220 41 125 4.50e-12 65.1
MS.gene37449.t1 MTR_5g019650 43.158 95 49 1 123 217 48 137 8.84e-12 63.9
MS.gene37449.t1 MTR_5g019680 39.423 104 58 1 123 226 48 146 4.97e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37449.t1 AT5G06710 58.788 165 60 4 89 253 151 307 5.85e-56 184
MS.gene37449.t1 AT4G37790 69.291 127 36 2 122 248 115 238 6.03e-55 179
MS.gene37449.t1 AT2G22800 68.800 125 36 2 124 248 104 225 5.68e-53 174
MS.gene37449.t1 AT4G16780 41.154 260 110 4 42 266 9 260 1.89e-52 173
MS.gene37449.t1 AT3G60390 64.567 127 41 2 122 247 151 274 3.84e-50 168
MS.gene37449.t1 AT5G47370 61.719 128 45 2 122 248 119 243 3.67e-47 159
MS.gene37449.t1 AT4G17460 61.905 126 44 2 124 248 126 248 3.98e-47 159
MS.gene37449.t1 AT2G44910 64.407 118 38 2 132 248 162 276 2.28e-46 159
MS.gene37449.t1 AT2G01430 55.639 133 48 3 122 248 122 249 8.58e-41 143
MS.gene37449.t1 AT1G70920 46.939 147 66 3 121 266 26 161 1.74e-35 126
MS.gene37449.t1 AT1G70920 50.388 129 53 2 121 248 56 174 1.93e-35 127
MS.gene37449.t1 AT5G06710 57.292 96 36 2 89 184 151 241 7.19e-24 98.2
MS.gene37449.t1 AT2G01430 62.319 69 20 2 122 184 122 190 3.50e-19 84.3
MS.gene37449.t1 AT3G01470 54.167 72 33 0 133 204 68 139 1.99e-16 77.8
MS.gene37449.t1 AT5G03790 40.000 95 57 0 127 221 71 165 6.15e-16 75.9
MS.gene37449.t1 AT1G69780 40.541 111 56 2 124 224 73 183 6.91e-16 76.6
MS.gene37449.t1 AT2G18550 46.154 91 49 0 129 219 57 147 3.67e-15 73.6
MS.gene37449.t1 AT5G15150 40.741 108 52 2 124 219 101 208 4.56e-15 74.7
MS.gene37449.t1 AT2G36610 35.714 126 66 3 109 221 44 167 6.81e-15 72.0
MS.gene37449.t1 AT1G27045 51.389 72 35 0 133 204 25 96 1.22e-14 71.2
MS.gene37449.t1 AT1G27045 51.389 72 35 0 133 204 25 96 1.22e-14 71.2
MS.gene37449.t1 AT1G27045 51.389 72 35 0 133 204 17 88 1.29e-14 70.9
MS.gene37449.t1 AT1G27045 51.389 72 35 0 133 204 68 139 1.30e-14 72.0
MS.gene37449.t1 AT1G26960 44.318 88 49 0 133 220 71 158 1.45e-14 72.4
MS.gene37449.t1 AT5G03790 36.066 122 73 1 127 243 71 192 1.52e-14 71.2
MS.gene37449.t1 AT1G27045 51.389 72 35 0 133 204 68 139 1.97e-14 72.0
MS.gene37449.t1 AT4G40060 40.187 107 56 2 131 230 57 162 2.22e-14 72.4
MS.gene37449.t1 AT5G65310 42.857 98 49 1 130 220 51 148 3.14e-14 72.0
MS.gene37449.t1 AT5G65310 42.857 98 49 1 130 220 69 166 3.68e-14 72.0
MS.gene37449.t1 AT3G01220 35.593 118 66 2 99 211 53 165 4.57e-14 71.2
MS.gene37449.t1 AT2G22430 42.268 97 49 1 131 220 60 156 5.41e-14 71.6
MS.gene37449.t1 AT4G36740 40.816 98 58 0 129 226 51 148 8.88e-14 69.3
MS.gene37449.t1 AT4G36740 40.816 98 58 0 129 226 52 149 8.94e-14 69.3
MS.gene37449.t1 AT3G61890 37.000 100 60 1 136 235 33 129 5.64e-12 64.7
MS.gene37449.t1 AT2G46680 37.895 95 55 1 136 226 35 129 8.87e-12 64.3
MS.gene37449.t1 AT2G46680 40.000 85 51 0 136 220 35 119 1.77e-11 63.5

Find 72 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTCTTCAATATTATTATT+AGG 0.146207 3.4:-91234398 None:intergenic
TATTCGCATAGAAGTGAATT+TGG 0.189201 3.4:-91235907 None:intergenic
TCTCTTCAATATTATTATTA+GGG 0.203525 3.4:-91234397 None:intergenic
ACTCCTAAGGTAAGAGAATA+TGG 0.209934 3.4:-91234368 None:intergenic
CTGGCTCATGATGTACTTCT+TGG 0.248157 3.4:-91234574 None:intergenic
CAAGATTGAGGATTGTTCTT+TGG 0.279678 3.4:-91234663 None:intergenic
ATTTCTCTTGGTCTTGGTCT+TGG 0.292030 3.4:+91234272 MS.gene37449:CDS
AAGCTGCATGTAATTATTTA+CGG 0.292324 3.4:-91235771 None:intergenic
CTCCCTCTTGATGCTATTAG+AGG 0.294156 3.4:-91234534 None:intergenic
TAGAAGTGAATTTGGGCCTT+TGG 0.317815 3.4:-91235899 None:intergenic
TTTGATATTTCTCTTGGTCT+TGG 0.326125 3.4:+91234266 MS.gene37449:CDS
TAAACAAAGCAAGAAGATTA+AGG 0.355539 3.4:+91234313 MS.gene37449:CDS
AGCAATAGTTGCAGAAGATT+TGG 0.363873 3.4:-91235948 None:intergenic
AGAAGTGAATTTGGGCCTTT+GGG 0.375155 3.4:-91235898 None:intergenic
AGAGGAGGATCCATGTAATA+AGG 0.377051 3.4:+91234340 MS.gene37449:CDS
AGCTGCATGTAATTATTTAC+GGG 0.380708 3.4:-91235770 None:intergenic
AAATAATTACATGCAGCTTC+CGG 0.384069 3.4:+91235775 MS.gene37449:CDS
AAGCCTAAGTTTCTTCCTAC+TGG 0.393408 3.4:-91234639 None:intergenic
AAGAGAAATATCAAAATTCA+TGG 0.395654 3.4:-91234258 None:intergenic
ATTCGCATAGAAGTGAATTT+GGG 0.398240 3.4:-91235906 None:intergenic
CATCACGCTAGTAGAATTAG+AGG 0.402844 3.4:-91234495 None:intergenic
CTCATCGCCGGTGCCGGTGC+CGG 0.407320 3.4:-91235840 None:intergenic
GAGAGTAGAATGATCTTTGA+AGG 0.413896 3.4:-91234693 None:intergenic
TGGAGGTGTGGTTTCAAAAC+AGG 0.418208 3.4:+91235203 MS.gene37449:CDS
CAAAGAACAATCCTCAATCT+TGG 0.418520 3.4:+91234664 MS.gene37449:CDS
TCAACAAATGAAATCTTCTC+TGG 0.427530 3.4:-91234593 None:intergenic
GTTTATGTCTTTGTTCATGA+AGG 0.439832 3.4:-91234295 None:intergenic
TCAGAAGCAAAAGCAAGAAT+TGG 0.442692 3.4:+91235150 MS.gene37449:intron
CAAGAAGATTAAGGAGGAAG+AGG 0.445576 3.4:+91234322 MS.gene37449:CDS
CTTGATGCTATTAGAGGAGT+TGG 0.458659 3.4:-91234528 None:intergenic
GCCATTCTCATCGCCGGTGC+CGG 0.463859 3.4:-91235846 None:intergenic
TATTCTCTTACCTTAGGAGT+TGG 0.474125 3.4:+91234371 MS.gene37449:CDS
TGGCAAGCAAGCTGAATCTT+CGG 0.477653 3.4:+91235170 MS.gene37449:CDS
TACTACAACAAAGACTGAAT+CGG 0.478308 3.4:+91234442 MS.gene37449:CDS
TACCCATATTCTCTTACCTT+AGG 0.484324 3.4:+91234365 MS.gene37449:CDS
ATTTGCACCGGCACCGGCAC+CGG 0.484691 3.4:+91235833 MS.gene37449:CDS
GAAGGTGTCCTCCAAGATTG+AGG 0.485914 3.4:-91234675 None:intergenic
AACAGAAGAGAACAAGAGGC+TGG 0.492600 3.4:+91235703 MS.gene37449:CDS
ACCGGCACCGGCGATGAGAA+TGG 0.503337 3.4:+91235845 MS.gene37449:CDS
TATGGGTATGCCTTATTACA+TGG 0.508332 3.4:-91234350 None:intergenic
CTCCTAAGGTAAGAGAATAT+GGG 0.512060 3.4:-91234367 None:intergenic
AAAAGAATTTGCACCGGCAC+CGG 0.514546 3.4:+91235827 MS.gene37449:CDS
AGAGAACAAGAGGCTGGAAG+AGG 0.519798 3.4:+91235709 MS.gene37449:CDS
AATCAAAGCCGTGGTGTGAG+AGG 0.529506 3.4:-91235870 None:intergenic
AAAGCTGAAACAAACGGAAG+TGG 0.530773 3.4:+91235646 MS.gene37449:CDS
GGCTTTGATTCTCTGCCCAA+AGG 0.536458 3.4:+91235883 MS.gene37449:CDS
CTCTTCAATATTATTATTAG+GGG 0.543753 3.4:-91234396 None:intergenic
CTCTAACAGAAGAGAACAAG+AGG 0.544383 3.4:+91235699 MS.gene37449:CDS
CAGGACAAAGCTGAAACAAA+CGG 0.546061 3.4:+91235640 MS.gene37449:intron
AGATCATTCTACTCTCAATC+CGG 0.548356 3.4:+91234700 MS.gene37449:CDS
AGAAGGGCAAACTGTAAGAC+TGG 0.550866 3.4:-91235801 None:intergenic
ACTCCAGTAGGAAGAAACTT+AGG 0.556676 3.4:+91234636 MS.gene37449:CDS
GGACGAGACAAGTGGAGGTG+TGG 0.566994 3.4:+91235191 MS.gene37449:CDS
CAAACTGTAAGACTGGCAAC+CGG 0.573412 3.4:-91235794 None:intergenic
ATTAGGGGATCCAACTCCTA+AGG 0.574104 3.4:-91234381 None:intergenic
GAAGATTAAGGAGGAAGAGG+AGG 0.576607 3.4:+91234325 MS.gene37449:CDS
AGAGGAGCCATTCTCATCGC+CGG 0.585404 3.4:-91235852 None:intergenic
GGTTTCAAAACAGGAGGGCA+AGG 0.585888 3.4:+91235212 MS.gene37449:CDS
AGAACAATCCTCAATCTTGG+AGG 0.594021 3.4:+91234667 MS.gene37449:CDS
AGGTGTGGTTTCAAAACAGG+AGG 0.617414 3.4:+91235206 MS.gene37449:CDS
ACTCCTCTAATAGCATCAAG+AGG 0.625878 3.4:+91234531 MS.gene37449:CDS
ATGTAAATGATAACTCCAGT+AGG 0.626226 3.4:+91234624 MS.gene37449:CDS
TCTTGTAAAAGAATTTGCAC+CGG 0.632422 3.4:+91235821 MS.gene37449:CDS
GAATCTTCGGACGAGACAAG+TGG 0.639016 3.4:+91235183 MS.gene37449:CDS
CTCCTCTAATAGCATCAAGA+GGG 0.641427 3.4:+91234532 MS.gene37449:CDS
ACAAAGCAAGAAGATTAAGG+AGG 0.671987 3.4:+91234316 MS.gene37449:CDS
TGGGCAGAGAATCAAAGCCG+TGG 0.678880 3.4:-91235879 None:intergenic
TCTTCGGACGAGACAAGTGG+AGG 0.693782 3.4:+91235186 MS.gene37449:CDS
ACAAACGGAAGTGGACTGTG+AGG 0.696543 3.4:+91235655 MS.gene37449:CDS
GGTGTGGTTTCAAAACAGGA+GGG 0.700214 3.4:+91235207 MS.gene37449:CDS
GCTTAAGTCCATGAAAACAA+CGG 0.721053 3.4:+91235742 MS.gene37449:CDS
GAATGGCTCCTCTCACACCA+CGG 0.757581 3.4:+91235862 MS.gene37449:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATTAATAAAATAAA+TGG - chr3.4:91234935-91234954 None:intergenic 0.0%
!!! AAAAATTATAAATATTTTTA+TGG + chr3.4:91235317-91235336 MS.gene37449:intron 0.0%
!! TAATATTATGTAAAAAAACA+TGG - chr3.4:91235270-91235289 None:intergenic 10.0%
!!! AAATTGAATAAATTTTTTGA+TGG + chr3.4:91235011-91235030 MS.gene37449:intron 10.0%
!!! ATTATAAATATTTTTATGGT+TGG + chr3.4:91235321-91235340 MS.gene37449:intron 10.0%
!! ATAACATCATATTATATAGT+AGG - chr3.4:91235082-91235101 None:intergenic 15.0%
!! ATTTATTTGAGCAAATTAAT+TGG + chr3.4:91234773-91234792 MS.gene37449:intron 15.0%
!! TAAATTAACTAATATGTACT+TGG + chr3.4:91234745-91234764 MS.gene37449:intron 15.0%
!! TAACATCATATTATATAGTA+GGG - chr3.4:91235081-91235100 None:intergenic 15.0%
!! TCTCTTCAATATTATTATTA+GGG - chr3.4:91234400-91234419 None:intergenic 15.0%
!!! ATTAATCTTTTGAATTTTGT+GGG - chr3.4:91235411-91235430 None:intergenic 15.0%
!!! CAAAGATATTAGTTTTTTTT+AGG + chr3.4:91234832-91234851 MS.gene37449:intron 15.0%
!! AAGAATTTGAAGATATATAC+CGG - chr3.4:91234722-91234741 None:intergenic 20.0%
!! AAGAGAAATATCAAAATTCA+TGG - chr3.4:91234261-91234280 None:intergenic 20.0%
!! ATTTACCATATAATATATGC+AGG + chr3.4:91235621-91235640 MS.gene37449:intron 20.0%
!! CTCTTCAATATTATTATTAG+GGG - chr3.4:91234399-91234418 None:intergenic 20.0%
!! GTCTCTTCAATATTATTATT+AGG - chr3.4:91234401-91234420 None:intergenic 20.0%
!! GTTATTTATAAGTCATGAAT+TGG + chr3.4:91235097-91235116 MS.gene37449:intron 20.0%
!! TTAATAAAAATGAGTGCATT+TGG + chr3.4:91234954-91234973 MS.gene37449:intron 20.0%
!! TTTAATTACTTTGCTTTACA+AGG - chr3.4:91234994-91235013 None:intergenic 20.0%
!!! ATGAATTTTGATATTTCTCT+TGG + chr3.4:91234260-91234279 MS.gene37449:CDS 20.0%
!!! GATTAATCTTTTGAATTTTG+TGG - chr3.4:91235412-91235431 None:intergenic 20.0%
! AAGCTGCATGTAATTATTTA+CGG - chr3.4:91235774-91235793 None:intergenic 25.0%
! TAAACAAAGCAAGAAGATTA+AGG + chr3.4:91234313-91234332 MS.gene37449:CDS 25.0%
! TTTGTCCTGCATATATTATA+TGG - chr3.4:91235629-91235648 None:intergenic 25.0%
!! AACTATCCTTAAGAGTTTTA+AGG - chr3.4:91235372-91235391 None:intergenic 25.0%
!! TGCAAATTCTTTTACAAGAA+GGG - chr3.4:91235820-91235839 None:intergenic 25.0%
AAATAATTACATGCAGCTTC+CGG + chr3.4:91235775-91235794 MS.gene37449:CDS 30.0%
AGCTGCATGTAATTATTTAC+GGG - chr3.4:91235773-91235792 None:intergenic 30.0%
ATGTAAATGATAACTCCAGT+AGG + chr3.4:91234624-91234643 MS.gene37449:CDS 30.0%
ATTCGCATAGAAGTGAATTT+GGG - chr3.4:91235909-91235928 None:intergenic 30.0%
CTTTACAAGGACTAAATACA+TGG - chr3.4:91234981-91235000 None:intergenic 30.0%
GTTTATGTCTTTGTTCATGA+AGG - chr3.4:91234298-91234317 None:intergenic 30.0%
TACTACAACAAAGACTGAAT+CGG + chr3.4:91234442-91234461 MS.gene37449:CDS 30.0%
TATTCGCATAGAAGTGAATT+TGG - chr3.4:91235910-91235929 None:intergenic 30.0%
TCAACAAATGAAATCTTCTC+TGG - chr3.4:91234596-91234615 None:intergenic 30.0%
TCTTGTAAAAGAATTTGCAC+CGG + chr3.4:91235821-91235840 MS.gene37449:CDS 30.0%
TTTGATATTTCTCTTGGTCT+TGG + chr3.4:91234266-91234285 MS.gene37449:CDS 30.0%
! GTGCAAATTCTTTTACAAGA+AGG - chr3.4:91235821-91235840 None:intergenic 30.0%
AAGCGACCTTAAAACTCTTA+AGG + chr3.4:91235363-91235382 MS.gene37449:intron 35.0%
ACAAAGCAAGAAGATTAAGG+AGG + chr3.4:91234316-91234335 MS.gene37449:CDS 35.0%
ACTCCTAAGGTAAGAGAATA+TGG - chr3.4:91234371-91234390 None:intergenic 35.0%
AGATCATTCTACTCTCAATC+CGG + chr3.4:91234700-91234719 MS.gene37449:CDS 35.0%
AGCAATAGTTGCAGAAGATT+TGG - chr3.4:91235951-91235970 None:intergenic 35.0%
CAAAGAACAATCCTCAATCT+TGG + chr3.4:91234664-91234683 MS.gene37449:CDS 35.0%
CAAGATTGAGGATTGTTCTT+TGG - chr3.4:91234666-91234685 None:intergenic 35.0%
CTCCTAAGGTAAGAGAATAT+GGG - chr3.4:91234370-91234389 None:intergenic 35.0%
GAGAGTAGAATGATCTTTGA+AGG - chr3.4:91234696-91234715 None:intergenic 35.0%
GCTTAAGTCCATGAAAACAA+CGG + chr3.4:91235742-91235761 MS.gene37449:CDS 35.0%
TACCCATATTCTCTTACCTT+AGG + chr3.4:91234365-91234384 MS.gene37449:CDS 35.0%
TATTCTCTTACCTTAGGAGT+TGG + chr3.4:91234371-91234390 MS.gene37449:CDS 35.0%
TCAGAAGCAAAAGCAAGAAT+TGG + chr3.4:91235150-91235169 MS.gene37449:intron 35.0%
! TATGGGTATGCCTTATTACA+TGG - chr3.4:91234353-91234372 None:intergenic 35.0%
AAAGCTGAAACAAACGGAAG+TGG + chr3.4:91235646-91235665 MS.gene37449:CDS 40.0%
AAGCCTAAGTTTCTTCCTAC+TGG - chr3.4:91234642-91234661 None:intergenic 40.0%
ACTCCAGTAGGAAGAAACTT+AGG + chr3.4:91234636-91234655 MS.gene37449:CDS 40.0%
ACTCCTCTAATAGCATCAAG+AGG + chr3.4:91234531-91234550 MS.gene37449:CDS 40.0%
AGAACAATCCTCAATCTTGG+AGG + chr3.4:91234667-91234686 MS.gene37449:CDS 40.0%
AGAAGTGAATTTGGGCCTTT+GGG - chr3.4:91235901-91235920 None:intergenic 40.0%
AGAGGAGGATCCATGTAATA+AGG + chr3.4:91234340-91234359 MS.gene37449:CDS 40.0%
CAAGAAGATTAAGGAGGAAG+AGG + chr3.4:91234322-91234341 MS.gene37449:CDS 40.0%
CAGGACAAAGCTGAAACAAA+CGG + chr3.4:91235640-91235659 MS.gene37449:intron 40.0%
CATCACGCTAGTAGAATTAG+AGG - chr3.4:91234498-91234517 None:intergenic 40.0%
CTCCTCTAATAGCATCAAGA+GGG + chr3.4:91234532-91234551 MS.gene37449:CDS 40.0%
CTCTAACAGAAGAGAACAAG+AGG + chr3.4:91235699-91235718 MS.gene37449:CDS 40.0%
CTTGATGCTATTAGAGGAGT+TGG - chr3.4:91234531-91234550 None:intergenic 40.0%
TAGAAGTGAATTTGGGCCTT+TGG - chr3.4:91235902-91235921 None:intergenic 40.0%
TGCTTCTGATCATGTGTCAA+AGG - chr3.4:91235139-91235158 None:intergenic 40.0%
!! ATTTCTCTTGGTCTTGGTCT+TGG + chr3.4:91234272-91234291 MS.gene37449:CDS 40.0%
AACAGAAGAGAACAAGAGGC+TGG + chr3.4:91235703-91235722 MS.gene37449:CDS 45.0%
AGAAGGGCAAACTGTAAGAC+TGG - chr3.4:91235804-91235823 None:intergenic 45.0%
AGGTGTGGTTTCAAAACAGG+AGG + chr3.4:91235206-91235225 MS.gene37449:CDS 45.0%
ATTAGGGGATCCAACTCCTA+AGG - chr3.4:91234384-91234403 None:intergenic 45.0%
CAAACTGTAAGACTGGCAAC+CGG - chr3.4:91235797-91235816 None:intergenic 45.0%
CTCCCTCTTGATGCTATTAG+AGG - chr3.4:91234537-91234556 None:intergenic 45.0%
CTGGCTCATGATGTACTTCT+TGG - chr3.4:91234577-91234596 None:intergenic 45.0%
GAAGATTAAGGAGGAAGAGG+AGG + chr3.4:91234325-91234344 MS.gene37449:CDS 45.0%
GGTGTGGTTTCAAAACAGGA+GGG + chr3.4:91235207-91235226 MS.gene37449:CDS 45.0%
TGGCAAGCAAGCTGAATCTT+CGG + chr3.4:91235170-91235189 MS.gene37449:CDS 45.0%
TTGAGCGTGCGAATGATACT+TGG + chr3.4:91235439-91235458 MS.gene37449:intron 45.0%
! AAAAGAATTTGCACCGGCAC+CGG + chr3.4:91235827-91235846 MS.gene37449:CDS 45.0%
! TGGAGGTGTGGTTTCAAAAC+AGG + chr3.4:91235203-91235222 MS.gene37449:CDS 45.0%
!!! AATTGAATAAATTTTTTAAA+TGG - chr3.4:91234908-91234927 None:intergenic 5.0%
!!! ATTTATAATTTTTTTTTTGA+AGG - chr3.4:91235310-91235329 None:intergenic 5.0%
AATCAAAGCCGTGGTGTGAG+AGG - chr3.4:91235873-91235892 None:intergenic 50.0%
AGAGAACAAGAGGCTGGAAG+AGG + chr3.4:91235709-91235728 MS.gene37449:CDS 50.0%
ATCATTCGCACGCTCAACTG+CGG - chr3.4:91235436-91235455 None:intergenic 50.0%
GAATCTTCGGACGAGACAAG+TGG + chr3.4:91235183-91235202 MS.gene37449:CDS 50.0%
GGTTTCAAAACAGGAGGGCA+AGG + chr3.4:91235212-91235231 MS.gene37449:CDS 50.0%
! GGCTTTGATTCTCTGCCCAA+AGG + chr3.4:91235883-91235902 MS.gene37449:CDS 50.0%
! GTCGCTTGCATGTCTAAGAC+TGG - chr3.4:91235350-91235369 None:intergenic 50.0%
!! ACAAACGGAAGTGGACTGTG+AGG + chr3.4:91235655-91235674 MS.gene37449:CDS 50.0%
!! GAAGGTGTCCTCCAAGATTG+AGG - chr3.4:91234678-91234697 None:intergenic 50.0%
!! GGGTTGTGCCGTTGTTTTCA+TGG - chr3.4:91235753-91235772 None:intergenic 50.0%
AGAGGAGCCATTCTCATCGC+CGG - chr3.4:91235855-91235874 None:intergenic 55.0%
GAATGGCTCCTCTCACACCA+CGG + chr3.4:91235862-91235881 MS.gene37449:CDS 55.0%
TCTTCGGACGAGACAAGTGG+AGG + chr3.4:91235186-91235205 MS.gene37449:CDS 55.0%
TGGGCAGAGAATCAAAGCCG+TGG - chr3.4:91235882-91235901 None:intergenic 55.0%
GGACGAGACAAGTGGAGGTG+TGG + chr3.4:91235191-91235210 MS.gene37449:CDS 60.0%
GCCATTCTCATCGCCGGTGC+CGG - chr3.4:91235849-91235868 None:intergenic 65.0%
!! ACCGGCACCGGCGATGAGAA+TGG + chr3.4:91235845-91235864 MS.gene37449:CDS 65.0%
!! ATTTGCACCGGCACCGGCAC+CGG + chr3.4:91235833-91235852 MS.gene37449:CDS 65.0%
!! CTCATCGCCGGTGCCGGTGC+CGG - chr3.4:91235843-91235862 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 91234251 91235976 91234251 ID=MS.gene37449
chr3.4 mRNA 91234251 91235976 91234251 ID=MS.gene37449.t1;Parent=MS.gene37449
chr3.4 exon 91234251 91234721 91234251 ID=MS.gene37449.t1.exon1;Parent=MS.gene37449.t1
chr3.4 CDS 91234251 91234721 91234251 ID=cds.MS.gene37449.t1;Parent=MS.gene37449.t1
chr3.4 exon 91235154 91235233 91235154 ID=MS.gene37449.t1.exon2;Parent=MS.gene37449.t1
chr3.4 CDS 91235154 91235233 91235154 ID=cds.MS.gene37449.t1;Parent=MS.gene37449.t1
chr3.4 exon 91235643 91235976 91235643 ID=MS.gene37449.t1.exon3;Parent=MS.gene37449.t1
chr3.4 CDS 91235643 91235976 91235643 ID=cds.MS.gene37449.t1;Parent=MS.gene37449.t1
Gene Sequence

>MS.gene37449

ATGAACACCATGAATTTTGATATTTCTCTTGGTCTTGGTCTTGGCCTTCATGAACAAAGACATAAACAAAGCAAGAAGATTAAGGAGGAAGAGGAGGATCCATGTAATAAGGCATACCCATATTCTCTTACCTTAGGAGTTGGATCCCCTAATAATAATATTGAAGAGACAGATAATCATCAAGTAGCTACTACTACAACAAAGACTGAATCGGATGAGTTTATTTATAATTTGCATCAACGTGCCTCTAATTCTACTAGCGTGATGTCTTCATTTTCCAACTCCTCTAATAGCATCAAGAGGGAGAGAAATGATTTCAACAGCCAAGAAGTACATCATGAGCCAGAGAAGATTTCATTTGTTGATGCTGATGATGTAAATGATAACTCCAGTAGGAAGAAACTTAGGCTTACCAAAGAACAATCCTCAATCTTGGAGGACACCTTCAAAGATCATTCTACTCTCAATCCGGTATATATCTTCAAATTCTTCATTAAATTAACTAATATGTACTTGGTTAGAATTTATTTGAGCAAATTAATTGGTTATAATTAGTGAGCATAATTAAATATGTTTTTTTACAAAGATATTAGTTTTTTTTAGGAATTAAATATGTTTTTAATCTCTATAAAATAAGTATTATTTTAATTTAGTCCATTTAAAAAATTTATTCAATTTTAGCCATTTATTTTATTAATTTTTTTTAATAAAAATGAGTGCATTTGGTCCATGTATTTAGTCCTTGTAAAGCAAAGTAATTAAATTGAATAAATTTTTTGATGGACTAAATTCAAGTAGTAACTAGTAGAGAGAAAAAACATAATTAACCCTACTATATAATATGATGTTATTTATAAGTCATGAATTGGTTTGATTTCTCATTTTCCTTTGACACATGATCAGAAGCAAAAGCAAGAATTGGCAAGCAAGCTGAATCTTCGGACGAGACAAGTGGAGGTGTGGTTTCAAAACAGGAGGGCAAGGTTGTCATTCTATATTTACAATCATGATTCTCTCCATGTTTTTTTACATAATATTATTATAAATATTTTTATTCCTTCAAAAAAAAAATTATAAATATTTTTATGGTTGGAATCCAGTCTTAGACATGCAAGCGACCTTAAAACTCTTAAGGATAGTTTGTCGTCTATTTAAGTCCCACAAAATTCAAAAGATTAATCTCCGCAGTTGAGCGTGCGAATGATACTTGGTTAATTTCAACTCAAAATTATTTTAGATATAATAAATTGTCACATCGATTAATGATTATGATATCTCATATGCTATCAAACAAATGAAATTATATATTTTCACATAGTAGAATGCATGTGTAAAATTTACACACAAGCAAAATTCTTAAATGTAATCATATTTACCATATAATATATGCAGGACAAAGCTGAAACAAACGGAAGTGGACTGTGAGGCACTGAAGCATTGTTATGAAACTCTAACAGAAGAGAACAAGAGGCTGGAAGAGGAGTTGAAAGAGCTTAAGTCCATGAAAACAACGGCACAACCCGTAAATAATTACATGCAGCTTCCGGTTGCCAGTCTTACAGTTTGCCCTTCTTGTAAAAGAATTTGCACCGGCACCGGCACCGGCGATGAGAATGGCTCCTCTCACACCACGGCTTTGATTCTCTGCCCAAAGGCCCAAATTCACTTCTATGCGAATAATAATAACTATACGTTCGCCAAATCTTCTGCAACTATTGCTAGCTAG
Protein sequence

>MS.gene37449.t1

MNTMNFDISLGLGLGLHEQRHKQSKKIKEEEEDPCNKAYPYSLTLGVGSPNNNIEETDNHQVATTTTKTESDEFIYNLHQRASNSTSVMSSFSNSSNSIKRERNDFNSQEVHHEPEKISFVDADDVNDNSSRKKLRLTKEQSSILEDTFKDHSTLNPKQKQELASKLNLRTRQVEVWFQNRRARTKLKQTEVDCEALKHCYETLTEENKRLEEELKELKSMKTTAQPVNNYMQLPVASLTVCPSCKRICTGTGTGDENGSSHTTALILCPKAQIHFYANNNNYTFAKSSATIAS