AlfalfaGEDB | MS.gene37482

M. sativa cultivar XinJiangDaYe / MS.gene37482

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008080 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747
PFAM: PF00583.28 PF00628.32 PF16135.8

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37482.t1	RHN70377.1	75.8	458	41	3	86	543	85	472	4.90E-191	677.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37482.t1	F4IXE7	31.0	455	256	12	105	542	617	1030	1.0e-51	206.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37482.t1	A0A396J566	75.8	458	41	3	86	543	85	472	3.6e-191	677.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene37482.t1	TR	PHD

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37482.t1	MTR_7g109640	51.166	643	177	12	4	536	173	788	0.0	559
MS.gene37482.t1	MTR_3g103120	57.319	567	185	10	4	537	292	834	0.0	546
MS.gene37482.t1	MTR_3g103110	48.827	682	183	12	3	537	131	793	0.0	540
MS.gene37482.t1	MTR_5g024390	56.948	439	157	9	108	535	2	419	1.01e-163	472
MS.gene37482.t1	MTR_5g024500	56.264	439	160	9	108	535	2	419	7.22e-161	465
MS.gene37482.t1	MTR_3g103160	84.740	308	25	3	1	308	1	286	2.86e-142	418
MS.gene37482.t1	MTR_3g103160	91.176	170	15	0	374	543	275	444	3.80e-103	318
MS.gene37482.t1	MTR_5g071340	36.481	540	272	15	16	537	600	1086	6.35e-92	305
MS.gene37482.t1	MTR_3g464550	37.030	505	268	12	45	535	540	1008	4.71e-87	291
MS.gene37482.t1	MTR_2g078040	34.234	444	244	10	105	535	758	1166	1.08e-67	238

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37482.t1	AT5G58610	35.729	501	266	11	66	541	314	783	7.24e-84	278
MS.gene37482.t1	AT5G58610	35.729	501	266	11	66	541	545	1014	1.31e-82	278
MS.gene37482.t1	AT5G58610	35.729	501	266	11	66	541	545	1014	1.31e-82	278
MS.gene37482.t1	AT5G58610	35.729	501	266	11	66	541	545	1014	1.67e-82	278
MS.gene37482.t1	AT5G58610	35.729	501	266	11	66	541	536	1005	2.03e-82	278
MS.gene37482.t1	AT5G58610	35.729	501	266	11	66	541	536	1005	2.29e-82	278
MS.gene37482.t1	AT5G58610	34.608	497	251	12	66	541	536	979	4.40e-75	258
MS.gene37482.t1	AT5G58610	34.608	497	251	12	66	541	536	979	7.15e-75	257
MS.gene37482.t1	AT5G58610	34.932	438	229	11	66	478	545	951	1.24e-66	233
MS.gene37482.t1	AT5G58610	34.932	438	229	11	66	478	536	942	1.44e-66	233

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Find 99 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTATCTTCTTGGAAGA+CGG	0.564085	3.4:+90746656	MS.gene37482:CDS
AAAGAGGGAAAGTACTAAAG+AGG	0.506275	3.4:+90746432	MS.gene37482:CDS
AAAGCGACAGAGAGAATCCG+AGG	0.599141	3.4:+90746175	MS.gene37482:CDS
AAATGAAGTTTCTAGTCACA+TGG	0.625461	3.4:+90747084	MS.gene37482:CDS
AAGAAACGTTTGAACTTTCG+TGG	0.445092	3.4:+90747400	MS.gene37482:CDS
AAGAGGGAAAGTACTAAAGA+GGG	0.517147	3.4:+90746433	MS.gene37482:CDS
AAGGAAGCGTAAATTGACTG+TGG	0.704717	3.4:+90747282	MS.gene37482:CDS
AATGTGCCGTTTGTTGATGA+AGG	0.520351	3.4:+90747546	MS.gene37482:CDS
ACAAGAGATACTCCCTCTTT+TGG	0.339052	3.4:-90746546	None:intergenic
ACAAGCATGAGCCTCAAATT+TGG	0.327395	3.4:-90746612	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTGATTAACTTAGGAGTT+GGG	+	chr3.4:90747581-90747600	MS.gene37482:CDS	30.0%
ATCAGAAGTTTCTAATTCAG+TGG	+	chr3.4:90746400-90746419	MS.gene37482:CDS	30.0%
ATGTGAACGAAAATTTCACT+TGG	+	chr3.4:90747030-90747049	MS.gene37482:CDS	30.0%
ATGTGACTAGAAACTTCATT+TGG	-	chr3.4:90747085-90747104	None:intergenic	30.0%
ATTGACAATGTTACCAAAAG+AGG	+	chr3.4:90746533-90746552	MS.gene37482:CDS	30.0%
CATAAGGATTTATGGTCAAA+AGG	+	chr3.4:90747474-90747493	MS.gene37482:CDS	30.0%
GGTGACTTAATATTATGTGA+TGG	+	chr3.4:90746842-90746861	MS.gene37482:CDS	30.0%
TAGGAATACCAAATAAGCTT+GGG	+	chr3.4:90747182-90747201	MS.gene37482:CDS	30.0%
TATAATGTGAGTTGTGATGA+TGG	+	chr3.4:90747232-90747251	MS.gene37482:CDS	30.0%
TCAGAAGTTTCTAATTCAGT+GGG	+	chr3.4:90746401-90746420	MS.gene37482:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	90746146	90747777	90746146	ID=MS.gene37482
chr3.4	mRNA	90746146	90747777	90746146	ID=MS.gene37482.t1;Parent=MS.gene37482
chr3.4	exon	90746146	90747777	90746146	ID=MS.gene37482.t1.exon1;Parent=MS.gene37482.t1
chr3.4	CDS	90746146	90747777	90746146	ID=cds.MS.gene37482.t1;Parent=MS.gene37482.t1

Gene Sequence

>MS.gene37482

ATGACTTCTCTGTCTACATTACAGTCAAAAAAGCGACAGAGAGAATCCGAGGAAGGAACAACAACAACAACAACAACAATTTCTTCATCTCCATTACAGTCAAAAGATCGCCTGAGAGAATCTGAGGGAACGGATAAATCAACTTCTGGTAAGGTTTCTAAAGCCTCTAGTTCCGGTTCTGTTAAAAAAGCTACACTAACAACGGTATCAAGATCAACTTCAAAGGAAAATGAGAAACATGTGAGTCAATCTGAATCAGAAGTTTCTAATTCAGTGGGTAGTGGTAAAAGAGGGAAAGTACTAAAGAGGGAAGGTATAAGAGGGAAGTGTTCTCAGTTGATAAAGGATGGAGTTTTGGTTTCTGGGACTATTGTTTTCTGCCGTGGTATTGACAATGTTACCAAAAGAGGGAGTATCTCTTGTGAAGGTATAGCTTGTGATTGTTGTCATGTTAAATTCACTCTCACCAAATTTGAGGCTCATGCTTGTTGTACAAGACGTAGACCATCCAAAAGTATCTTCTTGGAAGACGGAACTTCATTGTTGGACTTGGACCGTCGAATGAAAGCTCTGAGCTCAGCCAATCAAAAGGGGAATGATTGTAATGCTGAAGCAAAATCGGAAGCAGCGAATAGTTGTGTTGCTGAAGAAAAGTCTCATGAAAATAATGATACATGTTCTGTTTGTTGTTTTGGGGGTGACTTAATATTATGTGATGGATGTCCTTCTTCGTTCCACTCTGATTGTTTAGGTCCCAAACGAGATCCGGATGGTCTGGATGGTACATGGTTATGTCCGAGTTGCTGTTGTAGAATATGTTGTCAACCCAAACGCAAACAAGAATTTGCAAATGATATTGATGACGATATTCTTGCTTGTGTTCAATGTGAACGAAAATTTCACTTGGGGTGTGTAAAGGCAACAAGAATTGGACAACCAAATGAAGTTTCTAGTCACATGGACAACATTATTGAAAAAAATAATTGGTTTTGCCATGAAGTTTGTGGGAACATGTTCTTATGTCTAGAGAAACTACTAGGAATACCAAATAAGCTTGGGAATGATCTAACTTGGACATTGTTGAAGTATAATGTGAGTTGTGATGATGGAGATTTTGCTGATGAGGAGTTACATCAAAGGAAGCGTAAATTGACTGTGGCTCTTGGTGTGCTGCGTGAGAGTTTTGGTGAAACTATTGATCCTTTATCTAAAAAAGATTTGATTGAAGATGTTGTGTTTAGTAGATCCTCAGAAAAGAAACGTTTGAACTTTCGTGGTTTCTATACTGCGATTATGGAGAAAGGGGGTAAAGTGAGTTCTGTGGCAACCATAAGGATTTATGGTCAAAAGGTTGCTGAGATTGTTTTCATGGCCACCAAAAAAAAATATCGAAGACAAGGAATGTGCCGTTTGTTGATGAAGGGGCTTGAGGAACAGTTGATTAACTTAGGAGTTGGGAGCTTGGTTTTGCATTCCTCCAAGGATGCTATAGACACTTGGAAAAAATCATTTCATTTTGTTGAGATGACGAATGAAGACAAGTGTAAATTTGTTCATTATACTTTCTTTGAATTTCAGGACACTATCATGTGTCTTAAGCCACTTAACAAAGAAAGTGTCTCAAGTCACTGA

Protein sequence

>MS.gene37482.t1

MTSLSTLQSKKRQRESEEGTTTTTTTISSSPLQSKDRLRESEGTDKSTSGKVSKASSSGSVKKATLTTVSRSTSKENEKHVSQSESEVSNSVGSGKRGKVLKREGIRGKCSQLIKDGVLVSGTIVFCRGIDNVTKRGSISCEGIACDCCHVKFTLTKFEAHACCTRRRPSKSIFLEDGTSLLDLDRRMKALSSANQKGNDCNAEAKSEAANSCVAEEKSHENNDTCSVCCFGGDLILCDGCPSSFHSDCLGPKRDPDGLDGTWLCPSCCCRICCQPKRKQEFANDIDDDILACVQCERKFHLGCVKATRIGQPNEVSSHMDNIIEKNNWFCHEVCGNMFLCLEKLLGIPNKLGNDLTWTLLKYNVSCDDGDFADEELHQRKRKLTVALGVLRESFGETIDPLSKKDLIEDVVFSRSSEKKRLNFRGFYTAIMEKGGKVSSVATIRIYGQKVAEIVFMATKKKYRRQGMCRLLMKGLEEQLINLGVGSLVLHSSKDAIDTWKKSFHFVEMTNEDKCKFVHYTFFEFQDTIMCLKPLNKESVSSH