AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37492

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37492.t1 MTR_3g103030 89.130 322 28 2 1 316 1 321 0.0 595
MS.gene37492.t1 MTR_1g018090 49.176 364 104 12 1 298 1 349 7.71e-86 262
MS.gene37492.t1 MTR_1g018090 45.317 331 100 12 1 265 1 316 3.34e-60 195
MS.gene37492.t1 MTR_5g005110 57.778 180 61 5 136 307 136 308 2.45e-54 180
MS.gene37492.t1 MTR_1g106460 51.445 173 63 4 147 308 161 323 9.86e-47 160
MS.gene37492.t1 MTR_1g106470 78.161 87 19 0 222 308 195 281 2.64e-43 150
MS.gene37492.t1 MTR_1g106480 47.712 153 45 4 187 308 3 151 5.18e-33 119
MS.gene37492.t1 MTR_5g005110 49.630 135 53 5 136 262 136 263 4.87e-23 96.7
MS.gene37492.t1 MTR_5g079500 66.667 60 20 0 232 291 227 286 2.05e-22 95.5
MS.gene37492.t1 MTR_4g131160 52.632 76 36 0 222 297 195 270 2.61e-18 85.1
MS.gene37492.t1 MTR_4g131160 52.632 76 36 0 222 297 198 273 3.03e-18 85.1
MS.gene37492.t1 MTR_8g093500 60.606 66 25 1 222 287 114 178 1.95e-17 81.3
MS.gene37492.t1 MTR_1g080890 46.341 82 44 0 222 303 192 273 5.08e-16 78.2
MS.gene37492.t1 MTR_3g101810 53.968 63 29 0 223 285 171 233 9.64e-16 76.3
MS.gene37492.t1 MTR_7g069590 54.545 55 25 0 230 284 33 87 1.03e-14 70.9
MS.gene37492.t1 MTR_1g106460 38.889 126 56 4 147 261 161 276 5.20e-14 71.2
MS.gene37492.t1 MTR_1g019240 39.241 79 48 0 222 300 84 162 1.27e-13 70.1
MS.gene37492.t1 MTR_1g106470 74.419 43 11 0 222 264 195 237 1.42e-13 69.7
MS.gene37492.t1 MTR_1g084980 42.667 75 42 1 221 295 460 533 4.11e-13 70.5
MS.gene37492.t1 MTR_4g033295 53.030 66 30 1 222 286 117 182 1.31e-12 65.9
MS.gene37492.t1 MTR_4g033295 50.746 67 32 1 222 287 117 183 1.35e-12 65.9
MS.gene37492.t1 MTR_8g062240 31.847 157 88 5 139 286 69 215 3.71e-12 65.9
MS.gene37492.t1 MTR_1g069155 43.939 66 37 0 221 286 315 380 5.53e-12 66.6
MS.gene37492.t1 MTR_4g065870 39.823 113 66 2 175 286 308 419 5.84e-12 66.2
MS.gene37492.t1 MTR_7g099540 36.458 96 56 1 191 286 225 315 7.33e-12 66.2
MS.gene37492.t1 MTR_3g449770 30.822 146 89 2 154 292 233 373 8.34e-12 66.2
MS.gene37492.t1 MTR_1g052470 54.545 66 29 1 222 286 297 362 1.43e-11 65.1
MS.gene37492.t1 MTR_7g053410 30.526 190 116 5 98 286 207 381 1.57e-11 65.1
MS.gene37492.t1 MTR_7g053410 30.526 190 116 5 98 286 207 381 1.74e-11 65.1
MS.gene37492.t1 MTR_8g012290 53.125 64 29 1 224 286 292 355 1.84e-11 65.1
MS.gene37492.t1 MTR_8g012290 53.125 64 29 1 224 286 292 355 1.84e-11 65.1
MS.gene37492.t1 MTR_5g017040 42.188 64 37 0 236 299 118 181 1.85e-11 64.7
MS.gene37492.t1 MTR_1g017350 51.562 64 30 1 224 286 261 324 2.07e-11 64.7
MS.gene37492.t1 MTR_1g017350 51.562 64 30 1 224 286 261 324 2.20e-11 64.7
MS.gene37492.t1 MTR_1g017350 51.562 64 30 1 224 286 261 324 2.45e-11 64.3
MS.gene37492.t1 MTR_1g017350 51.562 64 30 1 224 286 261 324 2.55e-11 64.3
MS.gene37492.t1 MTR_7g110810 46.269 67 34 1 220 286 201 265 2.89e-11 63.9
MS.gene37492.t1 MTR_5g037250 50.000 64 31 1 224 286 113 176 3.28e-11 62.8
MS.gene37492.t1 MTR_4g065870 39.091 110 65 2 175 283 308 416 5.19e-11 63.5
MS.gene37492.t1 MTR_4g070320 51.562 64 30 1 224 286 144 207 5.34e-11 63.2
MS.gene37492.t1 MTR_2g098310 50.000 66 32 1 222 286 331 396 5.88e-11 63.2
MS.gene37492.t1 MTR_3g498825 53.125 64 29 1 224 286 148 211 8.08e-11 62.4
MS.gene37492.t1 MTR_3g116770 51.562 64 30 1 224 286 192 255 8.18e-11 62.8
MS.gene37492.t1 MTR_3g116770 51.562 64 30 1 224 286 192 255 8.59e-11 62.8
MS.gene37492.t1 MTR_5g048860 51.562 64 30 1 224 286 366 429 9.16e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37492.t1 AT2G14760 50.230 217 74 6 109 307 121 321 2.79e-56 185
MS.gene37492.t1 AT4G33880 59.119 159 62 1 150 305 190 348 9.60e-55 182
MS.gene37492.t1 AT1G27740 61.486 148 40 3 162 308 121 252 4.18e-53 175
MS.gene37492.t1 AT2G14760 47.391 230 74 7 109 307 121 334 1.24e-52 176
MS.gene37492.t1 AT5G43175 57.931 145 52 3 165 308 81 217 8.34e-46 155
MS.gene37492.t1 AT5G37800 61.039 77 29 1 216 291 193 269 1.39e-23 99.0
MS.gene37492.t1 AT1G66470 52.809 89 42 0 203 291 175 263 2.78e-23 97.8
MS.gene37492.t1 AT2G24260 51.613 93 43 1 207 297 17 109 1.15e-21 92.4
MS.gene37492.t1 AT4G30980 47.573 103 47 2 189 290 101 197 3.42e-21 92.4
MS.gene37492.t1 AT4G30980 47.573 103 47 2 189 290 149 245 4.42e-21 92.8
MS.gene37492.t1 AT2G24260 51.613 93 43 1 207 297 120 212 7.03e-21 92.0
MS.gene37492.t1 AT5G58010 48.352 91 43 2 222 308 98 188 8.38e-19 85.5
MS.gene37492.t1 AT3G21330 52.381 63 30 0 223 285 269 331 2.64e-15 76.3
MS.gene37492.t1 AT5G50915 35.196 179 76 7 170 314 57 229 9.03e-15 73.6
MS.gene37492.t1 AT5G50915 35.196 179 76 7 170 314 57 229 9.03e-15 73.6
MS.gene37492.t1 AT5G50915 35.196 179 76 7 170 314 57 229 9.44e-15 73.6
MS.gene37492.t1 AT5G50915 35.196 179 76 7 170 314 57 229 9.44e-15 73.6
MS.gene37492.t1 AT5G01305 49.180 61 31 0 222 282 36 96 1.34e-14 71.2
MS.gene37492.t1 AT4G00120 50.000 54 27 0 232 285 121 174 3.56e-14 70.5
MS.gene37492.t1 AT1G25330 50.617 81 39 1 224 303 105 185 4.20e-13 68.2
MS.gene37492.t1 AT1G09530 37.895 95 53 1 201 295 321 409 5.78e-13 69.7
MS.gene37492.t1 AT1G09530 37.895 95 53 1 201 295 321 409 5.78e-13 69.7
MS.gene37492.t1 AT1G09530 37.895 95 53 1 201 295 321 409 5.78e-13 69.7
MS.gene37492.t1 AT1G09530 37.895 95 53 1 201 295 321 409 5.78e-13 69.7
MS.gene37492.t1 AT1G09530 37.895 95 53 1 201 295 321 409 5.78e-13 69.7
MS.gene37492.t1 AT1G09530 37.895 95 53 1 201 295 321 409 5.78e-13 69.7
MS.gene37492.t1 AT4G00050 39.423 104 51 3 183 286 77 168 1.09e-12 67.8
MS.gene37492.t1 AT1G51140 53.846 65 29 1 222 285 303 367 1.09e-12 68.6
MS.gene37492.t1 AT1G18400 54.688 64 28 1 224 286 146 209 1.58e-12 66.6
MS.gene37492.t1 AT5G67110 41.000 100 45 3 219 316 81 168 1.99e-12 65.9
MS.gene37492.t1 AT1G18400 54.688 64 28 1 224 286 146 209 2.21e-12 66.6
MS.gene37492.t1 AT4G00050 39.423 104 51 3 183 286 179 270 2.53e-12 67.4
MS.gene37492.t1 AT4G00050 39.423 104 51 3 183 286 179 270 2.55e-12 67.4
MS.gene37492.t1 AT4G09180 48.529 68 34 1 222 288 183 250 4.90e-12 65.5
MS.gene37492.t1 AT1G35460 50.000 66 32 1 222 286 180 245 8.72e-12 64.7
MS.gene37492.t1 AT2G20180 37.363 91 52 1 196 286 185 270 1.20e-11 65.5
MS.gene37492.t1 AT2G20180 37.363 91 52 1 196 286 185 270 1.20e-11 65.5
MS.gene37492.t1 AT2G20180 37.363 91 52 1 196 286 185 270 1.20e-11 65.5
MS.gene37492.t1 AT2G20180 37.363 91 52 1 196 286 256 341 1.20e-11 65.5
MS.gene37492.t1 AT2G20180 37.363 91 52 1 196 286 256 341 1.20e-11 65.5
MS.gene37492.t1 AT2G20180 37.363 91 52 1 196 286 256 341 1.20e-11 65.5
MS.gene37492.t1 AT2G20180 37.363 91 52 1 196 286 256 341 1.20e-11 65.5
MS.gene37492.t1 AT4G28790 45.946 74 39 1 227 300 275 347 1.20e-11 65.5
MS.gene37492.t1 AT1G73830 51.562 64 30 1 224 286 148 211 1.23e-11 64.3
MS.gene37492.t1 AT1G73830 51.562 64 30 1 224 286 148 211 1.28e-11 64.3
MS.gene37492.t1 AT4G28815 38.776 98 55 2 206 298 47 144 1.34e-11 63.9
MS.gene37492.t1 AT4G36930 31.624 117 78 2 200 315 167 282 1.55e-11 65.1
MS.gene37492.t1 AT2G46970 31.356 118 75 2 195 307 165 281 1.65e-11 65.1
MS.gene37492.t1 AT2G46970 31.356 118 75 2 195 307 174 290 1.76e-11 64.7
MS.gene37492.t1 AT2G46970 31.356 118 75 2 195 307 196 312 1.80e-11 65.1
MS.gene37492.t1 AT4G28815 38.776 98 55 2 206 298 123 220 2.18e-11 63.9
MS.gene37492.t1 AT2G18300 36.434 129 73 3 159 286 129 249 2.27e-11 64.3
MS.gene37492.t1 AT2G18300 36.434 129 73 3 159 286 129 249 2.42e-11 64.3
MS.gene37492.t1 AT1G68920 32.237 152 101 2 136 286 216 366 2.59e-11 64.7
MS.gene37492.t1 AT2G18300 36.434 129 73 3 159 286 129 249 2.75e-11 64.3
MS.gene37492.t1 AT3G07340 53.125 64 29 1 224 286 259 322 2.81e-11 64.3
MS.gene37492.t1 AT3G07340 53.125 64 29 1 224 286 259 322 3.14e-11 64.3
MS.gene37492.t1 AT1G26260 53.125 64 29 1 224 286 173 236 3.92e-11 63.5
MS.gene37492.t1 AT2G42280 52.308 65 30 1 222 285 278 342 3.93e-11 63.5
MS.gene37492.t1 AT1G26260 53.125 64 29 1 224 286 224 287 4.05e-11 63.9
MS.gene37492.t1 AT1G26260 53.125 64 29 1 224 286 224 287 4.05e-11 63.9
MS.gene37492.t1 AT1G26260 53.125 64 29 1 224 286 224 287 4.05e-11 63.9
MS.gene37492.t1 AT1G26260 53.125 64 29 1 224 286 224 287 4.05e-11 63.9
MS.gene37492.t1 AT5G48560 53.125 64 29 1 224 286 302 365 4.30e-11 63.9
MS.gene37492.t1 AT5G48560 53.125 64 29 1 224 286 302 365 4.31e-11 63.9
MS.gene37492.t1 AT1G26260 53.125 64 29 1 224 286 202 265 4.33e-11 63.5
MS.gene37492.t1 AT1G59640 50.000 64 31 1 224 286 137 200 4.86e-11 62.8
MS.gene37492.t1 AT1G10120 51.562 64 30 1 224 286 207 270 5.22e-11 63.2
MS.gene37492.t1 AT1G10120 51.562 64 30 1 224 286 207 270 5.22e-11 63.2
MS.gene37492.t1 AT2G20180 37.079 89 51 1 196 284 256 339 5.97e-11 63.2
MS.gene37492.t1 AT4G34530 51.562 64 30 1 224 286 173 236 7.84e-11 62.8
MS.gene37492.t1 AT3G23690 50.000 64 31 1 224 286 192 255 8.79e-11 62.8

Find 56 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAACCTTCTTGCTCTTCT+TGG 0.125181 3.4:-90604071 None:intergenic
TGAGTATTATGATTACTTTC+TGG 0.228641 3.4:-90603644 None:intergenic
GCTTGATGTGCCAGAATTTC+AGG 0.228928 3.4:+90603781 MS.gene37492:CDS
GCTGCAGAAATTTCACATAT+TGG 0.264015 3.4:-90604717 None:intergenic
ACTCATATATTACCTTGATT+TGG 0.291701 3.4:-90604741 None:intergenic
TCTACATGCACCTGAAATTC+TGG 0.295024 3.4:-90603791 None:intergenic
TAAATTACCTTTGTCCCATT+TGG 0.321779 3.4:-90604571 None:intergenic
TATGCGCCAATTGCTTATAA+TGG 0.346115 3.4:+90604901 MS.gene37492:CDS
CTTCTGCTTGGAGAAAATAA+TGG 0.350452 3.4:+90603518 MS.gene37492:CDS
CTACAAAATCTTGTACCAAA+TGG 0.385534 3.4:+90604556 MS.gene37492:CDS
CATTCCCATTCGCCATCATC+AGG 0.393250 3.4:-90603428 None:intergenic
ACCCTTGCATAGAGGCTTTG+AGG 0.393741 3.4:-90604277 None:intergenic
TACAAAATCTTGTACCAAAT+GGG 0.416760 3.4:+90604557 MS.gene37492:CDS
GGAGAAAATAATGGGAACTT+TGG 0.422902 3.4:+90603527 MS.gene37492:CDS
GAAGCCAATGCAAGTGTAGA+TGG 0.429354 3.4:+90604115 MS.gene37492:CDS
TTCTGCTTGGAGAAAATAAT+GGG 0.435352 3.4:+90603519 MS.gene37492:CDS
ACATTGGATTCAATCTCAAC+AGG 0.435704 3.4:+90604929 MS.gene37492:CDS
TCAAGTCCATTATAAGCAAT+TGG 0.441871 3.4:-90604907 None:intergenic
AACCTAAGTTGAAGCTGAAA+AGG 0.448825 3.4:+90603756 MS.gene37492:CDS
TTGCTCCCCTTCTGAAGCTG+AGG 0.486357 3.4:+90603565 MS.gene37492:CDS
TTCCTCTGAGGTATAACCAC+TGG 0.491898 3.4:-90604146 None:intergenic
GATCAAACCTCGCTTCTGCT+TGG 0.495958 3.4:+90603506 MS.gene37492:CDS
GCTTATAATGGACTTGACAT+TGG 0.507048 3.4:+90604913 MS.gene37492:CDS
ATTTCTGCAGCTCCAAATCA+AGG 0.513225 3.4:+90604729 MS.gene37492:CDS
CTTGGAGCTGTCCCTGATGA+TGG 0.514194 3.4:+90603416 MS.gene37492:CDS
ATCCTCAAAGCCTCTATGCA+AGG 0.540493 3.4:+90604275 MS.gene37492:CDS
ATGTTTCCCTCAGCTTCAGA+AGG 0.542520 3.4:-90603572 None:intergenic
TGCTCCCCTTCTGAAGCTGA+GGG 0.548801 3.4:+90603566 MS.gene37492:CDS
AAGATAAGATAAACTCATGT+GGG 0.556515 3.4:+90603813 MS.gene37492:CDS
ACTGTGTCTCTCAACTCCAA+TGG 0.558276 3.4:+90604220 MS.gene37492:CDS
ATGTCCATCTACACTTGCAT+TGG 0.565311 3.4:-90604119 None:intergenic
TGTCCCTGATGATGGCGAAT+GGG 0.573461 3.4:+90603424 MS.gene37492:CDS
TGATAATTACCCTTGCATAG+AGG 0.574539 3.4:-90604285 None:intergenic
TGTTTCCCTCAGCTTCAGAA+GGG 0.575825 3.4:-90603571 None:intergenic
GAAGATAAGATAAACTCATG+TGG 0.590178 3.4:+90603812 MS.gene37492:CDS
ATTGTGGTGGAGAGTCATCA+TGG 0.590276 3.4:-90603478 None:intergenic
TCCTCAAAGCCTCTATGCAA+GGG 0.593714 3.4:+90604276 MS.gene37492:CDS
CTGTCCCTGATGATGGCGAA+TGG 0.598559 3.4:+90603423 MS.gene37492:CDS
TTCAGAAGGGGAGCAAAACA+TGG 0.599755 3.4:-90603558 None:intergenic
TCTTGTACCAAATGGGACAA+AGG 0.600952 3.4:+90604564 MS.gene37492:CDS
GGTTGATAGAAATGAGAACA+AGG 0.615117 3.4:+90604087 MS.gene37492:CDS
GAAAGTAATCATAATACTCA+AGG 0.616654 3.4:+90603647 MS.gene37492:CDS
GTTTCCCTCAGCTTCAGAAG+GGG 0.626059 3.4:-90603570 None:intergenic
GGAAAGAAAAGAGCTAGTAG+AGG 0.626774 3.4:+90604241 MS.gene37492:CDS
TTCTAAGCTCTGATGATCTG+TGG 0.632585 3.4:+90604875 MS.gene37492:CDS
GAGGTTTGATCAAGTAATTG+TGG 0.634212 3.4:-90603494 None:intergenic
AGAGTCCAAGAAGAGCAAGA+AGG 0.635660 3.4:+90604066 MS.gene37492:CDS
ATTCCCATTCGCCATCATCA+GGG 0.638692 3.4:-90603427 None:intergenic
GTTTGATCAAGTAATTGTGG+TGG 0.639569 3.4:-90603491 None:intergenic
CTTCAGTTGCAAATATTCTG+CGG 0.648235 3.4:-90603454 None:intergenic
CTCTGAGGTATAACCACTGG+AGG 0.652022 3.4:-90604143 None:intergenic
CTCCAGTGGTTATACCTCAG+AGG 0.674227 3.4:+90604144 MS.gene37492:CDS
AGAGGAACAAAACATGTGTG+AGG 0.675741 3.4:+90604162 MS.gene37492:CDS
GTAGATGGACATACCTCCAG+TGG 0.708485 3.4:+90604130 MS.gene37492:CDS
ATGTGTGAGGAAAACAGTGG+AGG 0.712518 3.4:+90604175 MS.gene37492:CDS
AACATGTGTGAGGAAAACAG+TGG 0.790408 3.4:+90604172 MS.gene37492:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATGATTTGAAATTTTG+TGG + chr3.4:90604007-90604026 MS.gene37492:intron 15.0%
!! ATCATTATTGCTAATTAAAG+TGG - chr3.4:90603996-90604015 None:intergenic 20.0%
!! ATTTCTGTTTAGAAATATCA+AGG + chr3.4:90604790-90604809 MS.gene37492:intron 20.0%
!! GAGATGTATAATTTGATATA+TGG + chr3.4:90604648-90604667 MS.gene37492:intron 20.0%
!! TGTATAATTTGATATATGGA+TGG + chr3.4:90604652-90604671 MS.gene37492:intron 20.0%
!!! ATGAATGTTTTGCATTTTAA+AGG + chr3.4:90604601-90604620 MS.gene37492:intron 20.0%
!!! TGAATGTTTTGCATTTTAAA+GGG + chr3.4:90604602-90604621 MS.gene37492:intron 20.0%
!!! TTGAATTTTACAGAAAAGAA+GGG + chr3.4:90604507-90604526 MS.gene37492:intron 20.0%
!!! TTTGAATTTTACAGAAAAGA+AGG + chr3.4:90604506-90604525 MS.gene37492:intron 20.0%
! AAGAGGAATAGTAAAACAAA+AGG - chr3.4:90604329-90604348 None:intergenic 25.0%
! AAGATAAGATAAACTCATGT+GGG + chr3.4:90603813-90603832 MS.gene37492:CDS 25.0%
! ACTCATATATTACCTTGATT+TGG - chr3.4:90604744-90604763 None:intergenic 25.0%
! GAAAGTAATCATAATACTCA+AGG + chr3.4:90603647-90603666 MS.gene37492:CDS 25.0%
! TACAAAATCTTGTACCAAAT+GGG + chr3.4:90604557-90604576 MS.gene37492:CDS 25.0%
! TGAGTATTATGATTACTTTC+TGG - chr3.4:90603647-90603666 None:intergenic 25.0%
!! TTGACATTTTGTAATCTCAA+AGG + chr3.4:90603950-90603969 MS.gene37492:intron 25.0%
!!! AATGTTTTGCATTTTAAAGG+GGG + chr3.4:90604604-90604623 MS.gene37492:intron 25.0%
!!! GAATGTTTTGCATTTTAAAG+GGG + chr3.4:90604603-90604622 MS.gene37492:intron 25.0%
!!! TAATTAATTTGTCAGCTTAG+CGG + chr3.4:90603919-90603938 MS.gene37492:intron 25.0%
ACAGAATGGAGATTAAAAAG+AGG - chr3.4:90604346-90604365 None:intergenic 30.0%
ATTGCTAATTAAAGTGGTAC+TGG - chr3.4:90603990-90604009 None:intergenic 30.0%
CTACAAAATCTTGTACCAAA+TGG + chr3.4:90604556-90604575 MS.gene37492:CDS 30.0%
CTGACAAATTAATTAACCGA+TGG - chr3.4:90603914-90603933 None:intergenic 30.0%
GAAGATAAGATAAACTCATG+TGG + chr3.4:90603812-90603831 MS.gene37492:CDS 30.0%
TAAATTACCTTTGTCCCATT+TGG - chr3.4:90604574-90604593 None:intergenic 30.0%
TCAAGTCCATTATAAGCAAT+TGG - chr3.4:90604910-90604929 None:intergenic 30.0%
TGCTATATACTTCATTCACT+TGG - chr3.4:90604463-90604482 None:intergenic 30.0%
TTCTGCTTGGAGAAAATAAT+GGG + chr3.4:90603519-90603538 MS.gene37492:CDS 30.0%
! ATTTTGTGGTTTCCAAATTC+AGG + chr3.4:90604021-90604040 MS.gene37492:intron 30.0%
! GGGACAAAGGTAATTTATTT+TGG + chr3.4:90604577-90604596 MS.gene37492:intron 30.0%
!! TTTTGATTGTTCTGATCATG+TGG + chr3.4:90603685-90603704 MS.gene37492:CDS 30.0%
ACATTGGATTCAATCTCAAC+AGG + chr3.4:90604929-90604948 MS.gene37492:CDS 35.0%
ATATATGGATGGTCATACAC+AGG + chr3.4:90604663-90604682 MS.gene37492:intron 35.0%
CTTCAGTTGCAAATATTCTG+CGG - chr3.4:90603457-90603476 None:intergenic 35.0%
CTTCTGCTTGGAGAAAATAA+TGG + chr3.4:90603518-90603537 MS.gene37492:CDS 35.0%
GAGGTTTGATCAAGTAATTG+TGG - chr3.4:90603497-90603516 None:intergenic 35.0%
GCTGCAGAAATTTCACATAT+TGG - chr3.4:90604720-90604739 None:intergenic 35.0%
GTTTGATCAAGTAATTGTGG+TGG - chr3.4:90603494-90603513 None:intergenic 35.0%
TATGCGCCAATTGCTTATAA+TGG + chr3.4:90604901-90604920 MS.gene37492:CDS 35.0%
TCCTTCCAAAGAAGAAAAGA+AGG - chr3.4:90604385-90604404 None:intergenic 35.0%
TGATAATTACCCTTGCATAG+AGG - chr3.4:90604288-90604307 None:intergenic 35.0%
! AACCTAAGTTGAAGCTGAAA+AGG + chr3.4:90603756-90603775 MS.gene37492:CDS 35.0%
! ATCCTTTTCAGCTTCAACTT+AGG - chr3.4:90603761-90603780 None:intergenic 35.0%
! GGAGAAAATAATGGGAACTT+TGG + chr3.4:90603527-90603546 MS.gene37492:CDS 35.0%
! TTTTCAGCTTCAACTTAGGT+TGG - chr3.4:90603757-90603776 None:intergenic 35.0%
!! ACTAGCTCTTTTCTTTCCAT+TGG - chr3.4:90604239-90604258 None:intergenic 35.0%
!! GCTTATAATGGACTTGACAT+TGG + chr3.4:90604913-90604932 MS.gene37492:CDS 35.0%
!! GGTTGATAGAAATGAGAACA+AGG + chr3.4:90604087-90604106 MS.gene37492:CDS 35.0%
!! TCTTTTCTTCTTTGGAAGGA+TGG + chr3.4:90604385-90604404 MS.gene37492:intron 35.0%
AACATGTGTGAGGAAAACAG+TGG + chr3.4:90604172-90604191 MS.gene37492:CDS 40.0%
ACATGCTATGGTTCACAGAA+TGG - chr3.4:90604360-90604379 None:intergenic 40.0%
AGAGGAACAAAACATGTGTG+AGG + chr3.4:90604162-90604181 MS.gene37492:CDS 40.0%
ATCAACCTTCTTGCTCTTCT+TGG - chr3.4:90604074-90604093 None:intergenic 40.0%
ATGTCCATCTACACTTGCAT+TGG - chr3.4:90604122-90604141 None:intergenic 40.0%
ATTCTGTGAACCATAGCATG+TGG + chr3.4:90604359-90604378 MS.gene37492:intron 40.0%
ATTTCTGCAGCTCCAAATCA+AGG + chr3.4:90604729-90604748 MS.gene37492:CDS 40.0%
CCATACGATATTCACTCCAT+CGG + chr3.4:90603895-90603914 MS.gene37492:intron 40.0%
GGAAAGAAAAGAGCTAGTAG+AGG + chr3.4:90604241-90604260 MS.gene37492:CDS 40.0%
TCTACATGCACCTGAAATTC+TGG - chr3.4:90603794-90603813 None:intergenic 40.0%
TCTTGTACCAAATGGGACAA+AGG + chr3.4:90604564-90604583 MS.gene37492:CDS 40.0%
TGCATCTTTGCACCTGAATT+TGG - chr3.4:90604036-90604055 None:intergenic 40.0%
! GCCTTCTTTTCTTCTTTGGA+AGG + chr3.4:90604381-90604400 MS.gene37492:intron 40.0%
! TGTGGCCTTCTTTTCTTCTT+TGG + chr3.4:90604377-90604396 MS.gene37492:intron 40.0%
! TTCTAAGCTCTGATGATCTG+TGG + chr3.4:90604875-90604894 MS.gene37492:CDS 40.0%
!! ACACATGTTTTGTTCCTCTG+AGG - chr3.4:90604161-90604180 None:intergenic 40.0%
!!! CAGCACGAGGTTTTTTCTTA+GGG - chr3.4:90603841-90603860 None:intergenic 40.0%
ACTGTGTCTCTCAACTCCAA+TGG + chr3.4:90604220-90604239 MS.gene37492:CDS 45.0%
AGAGTCCAAGAAGAGCAAGA+AGG + chr3.4:90604066-90604085 MS.gene37492:CDS 45.0%
ATCCTCAAAGCCTCTATGCA+AGG + chr3.4:90604275-90604294 MS.gene37492:CDS 45.0%
ATGTGTGAGGAAAACAGTGG+AGG + chr3.4:90604175-90604194 MS.gene37492:CDS 45.0%
ATGTTTCCCTCAGCTTCAGA+AGG - chr3.4:90603575-90603594 None:intergenic 45.0%
ATTCCCATTCGCCATCATCA+GGG - chr3.4:90603430-90603449 None:intergenic 45.0%
CCGATGGAGTGAATATCGTA+TGG - chr3.4:90603898-90603917 None:intergenic 45.0%
GAAAAGAAGGCCACATGCTA+TGG - chr3.4:90604372-90604391 None:intergenic 45.0%
GAAGCCAATGCAAGTGTAGA+TGG + chr3.4:90604115-90604134 MS.gene37492:CDS 45.0%
GCTTGATGTGCCAGAATTTC+AGG + chr3.4:90603781-90603800 MS.gene37492:CDS 45.0%
TCCTCAAAGCCTCTATGCAA+GGG + chr3.4:90604276-90604295 MS.gene37492:CDS 45.0%
TGTTTCCCTCAGCTTCAGAA+GGG - chr3.4:90603574-90603593 None:intergenic 45.0%
TTCAGAAGGGGAGCAAAACA+TGG - chr3.4:90603561-90603580 None:intergenic 45.0%
! ATTGTGGTGGAGAGTCATCA+TGG - chr3.4:90603481-90603500 None:intergenic 45.0%
! ATTTTCTCCAAGCAGAAGCG+AGG - chr3.4:90603516-90603535 None:intergenic 45.0%
! CTTACATCTTTTGCAGCACG+AGG - chr3.4:90603854-90603873 None:intergenic 45.0%
!! TTCCTCTGAGGTATAACCAC+TGG - chr3.4:90604149-90604168 None:intergenic 45.0%
!!! GCAGCACGAGGTTTTTTCTT+AGG - chr3.4:90603842-90603861 None:intergenic 45.0%
AATCTCGCCATGCCATCAAG+GGG - chr3.4:90604420-90604439 None:intergenic 50.0%
ACCCTTGCATAGAGGCTTTG+AGG - chr3.4:90604280-90604299 None:intergenic 50.0%
CATTCCCATTCGCCATCATC+AGG - chr3.4:90603431-90603450 None:intergenic 50.0%
CTCCAGTGGTTATACCTCAG+AGG + chr3.4:90604144-90604163 MS.gene37492:CDS 50.0%
GAATCTCGCCATGCCATCAA+GGG - chr3.4:90604421-90604440 None:intergenic 50.0%
GATCAAACCTCGCTTCTGCT+TGG + chr3.4:90603506-90603525 MS.gene37492:CDS 50.0%
GTAGATGGACATACCTCCAG+TGG + chr3.4:90604130-90604149 MS.gene37492:CDS 50.0%
GTTTCCCTCAGCTTCAGAAG+GGG - chr3.4:90603573-90603592 None:intergenic 50.0%
!! CTCTGAGGTATAACCACTGG+AGG - chr3.4:90604146-90604165 None:intergenic 50.0%
!! TGTCCCTGATGATGGCGAAT+GGG + chr3.4:90603424-90603443 MS.gene37492:CDS 50.0%
CGAATCTCGCCATGCCATCA+AGG - chr3.4:90604422-90604441 None:intergenic 55.0%
CTTGGAGCTGTCCCTGATGA+TGG + chr3.4:90603416-90603435 MS.gene37492:CDS 55.0%
TGGTCACACTAGCCCCTTGA+TGG + chr3.4:90604405-90604424 MS.gene37492:intron 55.0%
! ACACTAGCCCCTTGATGGCA+TGG + chr3.4:90604410-90604429 MS.gene37492:intron 55.0%
!! CTGTCCCTGATGATGGCGAA+TGG + chr3.4:90603423-90603442 MS.gene37492:CDS 55.0%
!! TGCTCCCCTTCTGAAGCTGA+GGG + chr3.4:90603566-90603585 MS.gene37492:CDS 55.0%
!! TTGCTCCCCTTCTGAAGCTG+AGG + chr3.4:90603565-90603584 MS.gene37492:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 90603407 90604975 90603407 ID=MS.gene37492
chr3.4 mRNA 90603407 90604975 90603407 ID=MS.gene37492.t1;Parent=MS.gene37492
chr3.4 exon 90603407 90603868 90603407 ID=MS.gene37492.t1.exon1;Parent=MS.gene37492.t1
chr3.4 CDS 90603407 90603868 90603407 ID=cds.MS.gene37492.t1;Parent=MS.gene37492.t1
chr3.4 exon 90604043 90604297 90604043 ID=MS.gene37492.t1.exon2;Parent=MS.gene37492.t1
chr3.4 CDS 90604043 90604297 90604043 ID=cds.MS.gene37492.t1;Parent=MS.gene37492.t1
chr3.4 exon 90604520 90604585 90604520 ID=MS.gene37492.t1.exon3;Parent=MS.gene37492.t1
chr3.4 CDS 90604520 90604585 90604520 ID=cds.MS.gene37492.t1;Parent=MS.gene37492.t1
chr3.4 exon 90604685 90604750 90604685 ID=MS.gene37492.t1.exon4;Parent=MS.gene37492.t1
chr3.4 CDS 90604685 90604750 90604685 ID=cds.MS.gene37492.t1;Parent=MS.gene37492.t1
chr3.4 exon 90604874 90604975 90604874 ID=MS.gene37492.t1.exon5;Parent=MS.gene37492.t1
chr3.4 CDS 90604874 90604975 90604874 ID=cds.MS.gene37492.t1;Parent=MS.gene37492.t1
Gene Sequence

>MS.gene37492

ATGGAAACACTTGGAGCTGTCCCTGATGATGGCGAATGGGAATGCTTCCGCAGAATATTTGCAACTGAAGACCATGATGACTCTCCACCACAATTACTTGATCAAACCTCGCTTCTGCTTGGAGAAAATAATGGGAACTTTGGAGTACAATCCATGTTTTGCTCCCCTTCTGAAGCTGAGGGAAACATGAATACTAATGTGTTTTATTCTTTTGATTCTCACATTAACTATAATTCACCAGAAAGTAATCATAATACTCAAGGTCACACAAACTACTATTTTGATTGTTCTGATCATGTGGTAGCTAATAATAGTGACAGAACAGAGAATTTTGATCACAATCAAGTCCAACCTAAGTTGAAGCTGAAAAGGATGCTTGATGTGCCAGAATTTCAGGTGCATGTAGAAGATAAGATAAACTCATGTGGGAACCCTAAGAAAAAACCTCGTGCTGCAAAAGATGTAAGCTTAATTTGTCTATATTTATACCATACGATATTCACTCCATCGGTTAATTAATTTGTCAGCTTAGCGGTTAGAGTCTTGACATTTTGTAATCTCAAAGGACAAAGTTCAAATTCCAGTACCACTTTAATTAGCAATAATGATTTGAAATTTTGTGGTTTCCAAATTCAGGTGCAAAGATGCATGAAAAATTCAGAGTCCAAGAAGAGCAAGAAGGTTGATAGAAATGAGAACAAGGCAGAAGAAGCCAATGCAAGTGTAGATGGACATACCTCCAGTGGTTATACCTCAGAGGAACAAAACATGTGTGAGGAAAACAGTGGAGGAGCTTCTGCAGCTTCTAAATCAACTGTGTCTCTCAACTCCAATGGAAAGAAAAGAGCTAGTAGAGGATCAGCAACAGATCCTCAAAGCCTCTATGCAAGGGTAATTATCAATTTCTTAAGTACAAATGCCTTTTGTTTTACTATTCCTCTTTTTAATCTCCATTCTGTGAACCATAGCATGTGGCCTTCTTTTCTTCTTTGGAAGGATGGTCACACTAGCCCCTTGATGGCATGGCGAGATTCGCGAAGCGAAGATCATTCGCCAAGTGAATGAAGTATATAGCAATTTATGTGATGCTTATTGTCTTTTTGAATTTTACAGAAAAGAAGGGAGAAAATAAACGAGAGACTGAGAACTCTACAAAATCTTGTACCAAATGGGACAAAGGTAATTTATTTTGGCATGAATGTTTTGCATTTTAAAGGGGGTTGTAAGTTGCAATTATTTGAGAGATGTATAATTTGATATATGGATGGTCATACACAGGTTGATATAAGCACAATGCTTGAAGATGCAATCCAATATGTGAAATTTCTGCAGCTCCAAATCAAGGTAATATATGAGTCGCGAAATATAGACGATTAATAATTAATTTCTGTTTAGAAATATCAAGGTGTGTGTATATGTTCAATCAGAATAACATCTTTTTAATATGAATGTTTATCTCTTATATAGCTTCTAAGCTCTGATGATCTGTGGATGTATGCGCCAATTGCTTATAATGGACTTGACATTGGATTCAATCTCAACAGGAAGAAGATTTCTCCACCACCATGA
Protein sequence

>MS.gene37492.t1

METLGAVPDDGEWECFRRIFATEDHDDSPPQLLDQTSLLLGENNGNFGVQSMFCSPSEAEGNMNTNVFYSFDSHINYNSPESNHNTQGHTNYYFDCSDHVVANNSDRTENFDHNQVQPKLKLKRMLDVPEFQVHVEDKINSCGNPKKKPRAAKDVQRCMKNSESKKSKKVDRNENKAEEANASVDGHTSSGYTSEEQNMCEENSGGASAASKSTVSLNSNGKKRASRGSATDPQSLYARKRREKINERLRTLQNLVPNGTKVDISTMLEDAIQYVKFLQLQIKLLSSDDLWMYAPIAYNGLDIGFNLNRKKISPPP