Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37561.t1 | XP_013444950.1 | 89.7 | 457 | 42 | 2 | 1 | 457 | 1 | 452 | 6.30E-219 | 770 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37561.t1 | Q5N6V8 | 29.6 | 257 | 155 | 5 | 21 | 272 | 9 | 244 | 3.2e-22 | 107.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37561.t1 | A0A072TZK7 | 89.7 | 457 | 42 | 2 | 1 | 457 | 1 | 452 | 4.6e-219 | 770.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene37561.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37561.t1 | MTR_8g032710 | 91.685 | 457 | 33 | 2 | 1 | 457 | 1 | 452 | 0.0 | 858 |
MS.gene37561.t1 | MTR_4g121020 | 31.295 | 278 | 152 | 7 | 20 | 287 | 33 | 281 | 2.78e-28 | 118 |
MS.gene37561.t1 | MTR_4g121020 | 31.295 | 278 | 152 | 7 | 20 | 287 | 33 | 281 | 2.92e-28 | 118 |
MS.gene37561.t1 | MTR_3g086100 | 30.620 | 258 | 153 | 8 | 20 | 272 | 15 | 251 | 3.67e-26 | 112 |
MS.gene37561.t1 | MTR_8g079940 | 31.102 | 254 | 155 | 9 | 20 | 272 | 27 | 261 | 4.89e-26 | 111 |
MS.gene37561.t1 | MTR_4g131600 | 29.921 | 254 | 155 | 5 | 20 | 272 | 22 | 253 | 1.52e-25 | 110 |
MS.gene37561.t1 | MTR_1g032570 | 30.739 | 257 | 157 | 5 | 20 | 272 | 13 | 252 | 2.47e-25 | 109 |
MS.gene37561.t1 | MTR_3g106220 | 28.125 | 256 | 164 | 6 | 21 | 272 | 11 | 250 | 9.38e-24 | 105 |
MS.gene37561.t1 | MTR_2g034960 | 28.253 | 269 | 171 | 5 | 20 | 287 | 31 | 278 | 3.78e-23 | 103 |
MS.gene37561.t1 | MTR_4g131570 | 28.016 | 257 | 167 | 5 | 20 | 275 | 19 | 258 | 1.11e-22 | 101 |
MS.gene37561.t1 | MTR_1g013170 | 28.352 | 261 | 153 | 6 | 21 | 272 | 8 | 243 | 3.86e-22 | 99.4 |
MS.gene37561.t1 | MTR_4g131580 | 26.923 | 260 | 161 | 4 | 21 | 275 | 20 | 255 | 4.86e-22 | 99.8 |
MS.gene37561.t1 | MTR_2g450070 | 27.969 | 261 | 163 | 7 | 21 | 272 | 21 | 265 | 7.11e-22 | 99.4 |
MS.gene37561.t1 | MTR_7g117705 | 26.855 | 283 | 173 | 7 | 21 | 294 | 8 | 265 | 8.88e-21 | 95.1 |
MS.gene37561.t1 | MTR_1g013180 | 28.571 | 266 | 168 | 6 | 21 | 283 | 159 | 405 | 3.36e-20 | 94.0 |
MS.gene37561.t1 | MTR_4g021760 | 26.482 | 253 | 140 | 6 | 21 | 272 | 14 | 221 | 1.63e-18 | 86.7 |
MS.gene37561.t1 | MTR_4g021790 | 24.906 | 265 | 151 | 7 | 20 | 283 | 12 | 229 | 1.41e-17 | 83.2 |
MS.gene37561.t1 | MTR_8g105600 | 27.106 | 273 | 159 | 8 | 20 | 284 | 11 | 251 | 8.50e-16 | 80.1 |
MS.gene37561.t1 | MTR_1g032570 | 28.000 | 200 | 123 | 5 | 77 | 272 | 1 | 183 | 1.28e-13 | 73.6 |
MS.gene37561.t1 | MTR_2g450070 | 30.252 | 119 | 82 | 1 | 21 | 139 | 21 | 138 | 2.62e-13 | 72.8 |
MS.gene37561.t1 | MTR_6g016850 | 34.426 | 122 | 76 | 3 | 20 | 139 | 11 | 130 | 8.35e-13 | 67.0 |
MS.gene37561.t1 | MTR_3g086100 | 27.363 | 201 | 120 | 8 | 77 | 272 | 1 | 180 | 2.41e-12 | 69.3 |
MS.gene37561.t1 | MTR_7g490310 | 36.090 | 133 | 61 | 5 | 24 | 134 | 11 | 141 | 7.93e-12 | 65.5 |
MS.gene37561.t1 | MTR_3g102600 | 30.328 | 122 | 84 | 1 | 21 | 142 | 11 | 131 | 8.02e-12 | 65.5 |
MS.gene37561.t1 | MTR_3g102600 | 30.328 | 122 | 84 | 1 | 21 | 142 | 11 | 131 | 8.92e-12 | 64.3 |
MS.gene37561.t1 | MTR_8g093040 | 32.258 | 124 | 80 | 2 | 22 | 142 | 18 | 140 | 1.17e-11 | 65.5 |
MS.gene37561.t1 | MTR_4g061360 | 30.469 | 128 | 84 | 3 | 18 | 142 | 85 | 210 | 9.73e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37561.t1 | AT3G16857 | 27.473 | 273 | 185 | 6 | 20 | 285 | 35 | 301 | 1.48e-25 | 110 |
MS.gene37561.t1 | AT3G16857 | 27.473 | 273 | 185 | 6 | 20 | 285 | 35 | 301 | 1.52e-25 | 110 |
MS.gene37561.t1 | AT2G25180 | 27.586 | 261 | 151 | 6 | 21 | 272 | 16 | 247 | 2.19e-23 | 103 |
MS.gene37561.t1 | AT1G67710 | 28.897 | 263 | 152 | 8 | 20 | 272 | 9 | 246 | 5.44e-22 | 99.4 |
MS.gene37561.t1 | AT4G31920 | 25.781 | 256 | 156 | 4 | 21 | 275 | 16 | 238 | 2.35e-21 | 97.4 |
MS.gene37561.t1 | AT5G58080 | 27.138 | 269 | 171 | 8 | 5 | 272 | 2 | 246 | 1.10e-19 | 92.4 |
MS.gene37561.t1 | AT3G16857 | 25.847 | 236 | 162 | 6 | 57 | 285 | 2 | 231 | 9.54e-18 | 86.7 |
MS.gene37561.t1 | AT1G49190 | 26.374 | 273 | 172 | 10 | 20 | 285 | 32 | 282 | 1.30e-17 | 85.1 |
MS.gene37561.t1 | AT2G01760 | 35.537 | 121 | 76 | 2 | 20 | 139 | 9 | 128 | 4.72e-15 | 77.0 |
MS.gene37561.t1 | AT5G49240 | 23.864 | 264 | 154 | 6 | 21 | 269 | 41 | 272 | 1.31e-14 | 74.7 |
MS.gene37561.t1 | AT2G40970 | 34.074 | 135 | 72 | 3 | 219 | 351 | 103 | 222 | 4.04e-12 | 66.6 |
MS.gene37561.t1 | AT2G27070 | 25.091 | 275 | 175 | 10 | 19 | 272 | 13 | 277 | 8.40e-12 | 67.8 |
MS.gene37561.t1 | AT4G00760 | 29.064 | 203 | 135 | 5 | 40 | 238 | 1 | 198 | 1.77e-11 | 65.9 |
Find 110 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCTAGACCAATTGCATTT+TGG | 0.197316 | 8.3:-61047057 | None:intergenic |
CTATGATCTCATAGGGAAAA+TGG | 0.221957 | 8.3:+61046657 | MS.gene37561:CDS |
ATATCACGGGCTCTTGGTTT+TGG | 0.233266 | 8.3:+61046842 | MS.gene37561:CDS |
GAGTGCCTCAAACTATTTAC+AGG | 0.272286 | 8.3:+61047390 | MS.gene37561:CDS |
GTTGTCCGGAGTCACCTTTC+AGG | 0.273076 | 8.3:+61047944 | MS.gene37561:CDS |
ATTCTTCTTCTCACAGATAA+TGG | 0.274227 | 8.3:-61046587 | None:intergenic |
TGATTTACATATGAAGTTCT+TGG | 0.275930 | 8.3:+61047198 | MS.gene37561:CDS |
ATAGTTTGAGGCACTCTCTT+TGG | 0.318103 | 8.3:-61047383 | None:intergenic |
TTCATGGATGGTTGGCATTT+GGG | 0.333819 | 8.3:-61047016 | None:intergenic |
ATTCATGGATGGTTGGCATT+TGG | 0.334762 | 8.3:-61047017 | None:intergenic |
CTAATTAGGCCACTTTGATT+TGG | 0.347358 | 8.3:+61048455 | MS.gene37561:intron |
ATGGAAATCTATGATCTCAT+AGG | 0.353225 | 8.3:+61046649 | MS.gene37561:CDS |
AAAACCAAGAGCCCGTGATA+TGG | 0.366143 | 8.3:-61046840 | None:intergenic |
AGATCCTTCGGATCGGCATC+TGG | 0.369128 | 8.3:-61047856 | None:intergenic |
ACCCTTCCACATTCATAATC+TGG | 0.374739 | 8.3:-61047357 | None:intergenic |
TGGCTTTCTAAAACACCATT+TGG | 0.375414 | 8.3:-61046867 | None:intergenic |
CTTCTTTCACTTGGATATGA+AGG | 0.378032 | 8.3:+61046145 | MS.gene37561:CDS |
CAATGACTGTTGTTTCATAT+CGG | 0.387086 | 8.3:-61046937 | None:intergenic |
GCATCTGTCAGATGTGATTA+TGG | 0.389198 | 8.3:+61046982 | MS.gene37561:CDS |
TCCTCAGCTTCGCCGCTGAC+TGG | 0.399441 | 8.3:-61046042 | None:intergenic |
AAACCATTCTCCTGTATTCA+TGG | 0.400145 | 8.3:-61047032 | None:intergenic |
CTCCTGCATTCAAAGATGGT+TGG | 0.406146 | 8.3:-61047081 | None:intergenic |
TGGTTGGCATTTGGGACCCT+TGG | 0.407552 | 8.3:-61047008 | None:intergenic |
TTTCTGATCTACATGACCTT+TGG | 0.412759 | 8.3:+61046897 | MS.gene37561:CDS |
CAAAATGCAATTGGTCTAGA+AGG | 0.418166 | 8.3:+61047058 | MS.gene37561:CDS |
GACTTTGCTGTTCCAATGGC+AGG | 0.429908 | 8.3:-61047981 | None:intergenic |
TTAGGCCACTTTGATTTGGC+AGG | 0.436132 | 8.3:+61048459 | MS.gene37561:intron |
CCTTCCATATCACGGGCTCT+TGG | 0.439741 | 8.3:+61046836 | MS.gene37561:CDS |
ATAACTCAGTACTCCTGAAC+AGG | 0.440547 | 8.3:+61047155 | MS.gene37561:CDS |
CAGTACTCCTGAACAGGAAA+AGG | 0.443080 | 8.3:+61047161 | MS.gene37561:CDS |
CTTGGAAAGCTCAAGTTGTC+CGG | 0.445175 | 8.3:+61047930 | MS.gene37561:CDS |
GACAGATGCCACACGAAGTC+AGG | 0.457217 | 8.3:-61046968 | None:intergenic |
ATAATCTGGAATATTGTCTT+CGG | 0.459039 | 8.3:-61047343 | None:intergenic |
CTCCTGTATTCATGGATGGT+TGG | 0.460192 | 8.3:-61047024 | None:intergenic |
TATGATCTCATAGGGAAAAT+GGG | 0.462257 | 8.3:+61046658 | MS.gene37561:CDS |
GTTGGTTGTGGATGCTAGTT+CGG | 0.466592 | 8.3:+61046096 | MS.gene37561:CDS |
TTGGAAGCTGTTGAAATAGC+AGG | 0.471879 | 8.3:+61047217 | MS.gene37561:CDS |
AAATCAGCTGTCCCTGCCAT+TGG | 0.472311 | 8.3:+61047969 | MS.gene37561:CDS |
TGAACAGGAAAAGGAAAAGC+TGG | 0.472904 | 8.3:+61047170 | MS.gene37561:CDS |
TGGTTTCGCCAAAATGCAAT+TGG | 0.475231 | 8.3:+61047049 | MS.gene37561:CDS |
AAGTGCAAATGGTAAAGAAC+AGG | 0.480421 | 8.3:+61047117 | MS.gene37561:CDS |
AGATCATAGATTTCCATGTC+TGG | 0.480523 | 8.3:-61046643 | None:intergenic |
TGTAGATCAGAAATCTGAAC+TGG | 0.485157 | 8.3:-61046887 | None:intergenic |
AAGACTTTCCGAAGTGCAAA+TGG | 0.488422 | 8.3:+61047106 | MS.gene37561:CDS |
TCCAGTCAGCGGCGAAGCTG+AGG | 0.492869 | 8.3:+61046041 | MS.gene37561:CDS |
TGCCAACCATCCATGAATAC+AGG | 0.500767 | 8.3:+61047022 | MS.gene37561:CDS |
ACAAACCTGTAAATAGTTTG+AGG | 0.502869 | 8.3:-61047395 | None:intergenic |
CATCTGCTGTATTCAAAACC+TGG | 0.512978 | 8.3:-61048074 | None:intergenic |
CTGATGAGGATTTGAATATG+TGG | 0.519558 | 8.3:+61048256 | MS.gene37561:CDS |
TCTGGTGGTAGTGGCGGCAT+AGG | 0.521933 | 8.3:-61048180 | None:intergenic |
ATAGGAAGCACCATGCATAA+TGG | 0.522991 | 8.3:-61048162 | None:intergenic |
GGCCAACCATCTTTGAATGC+AGG | 0.525238 | 8.3:+61047079 | MS.gene37561:CDS |
GATGGAGAAGTTTCTAATGC+AGG | 0.527317 | 8.3:+61048093 | MS.gene37561:CDS |
TTCCAGATTATGAATGTGGA+AGG | 0.529710 | 8.3:+61047355 | MS.gene37561:CDS |
GAACCTACGTGCTACTGCAA+TGG | 0.529949 | 8.3:+61047750 | MS.gene37561:CDS |
CATTCTCCTGTATTCATGGA+TGG | 0.530842 | 8.3:-61047028 | None:intergenic |
AACTCAGCTGTTTACTGATG+AGG | 0.532043 | 8.3:+61048242 | MS.gene37561:CDS |
GGAGGTTCAGTTGCCAGACA+TGG | 0.533668 | 8.3:+61046630 | MS.gene37561:CDS |
ACAAAATTACTGAGATCCTT+CGG | 0.535642 | 8.3:-61047868 | None:intergenic |
AGGTACCATGGTCCAGTAGC+CGG | 0.537071 | 8.3:+61046064 | MS.gene37561:CDS |
GTTCTTTACCATTTGCACTT+CGG | 0.537752 | 8.3:-61047114 | None:intergenic |
TGAGGTTAACCTTGTGCTTG+TGG | 0.538862 | 8.3:+61046609 | MS.gene37561:CDS |
TGGAAATCTATGATCTCATA+GGG | 0.539851 | 8.3:+61046650 | MS.gene37561:CDS |
GTTTATAAACCTACCAAGGC+TGG | 0.543151 | 8.3:-61048019 | None:intergenic |
ACTAGAACTTACTGAAAGAC+GGG | 0.545088 | 8.3:-61046696 | None:intergenic |
GCGCACACCACATCCAGCCT+TGG | 0.545507 | 8.3:+61048006 | MS.gene37561:CDS |
CGGACAACTTGAGCTTTCCA+AGG | 0.549307 | 8.3:-61047929 | None:intergenic |
GCAGGACTTTGCTGTTCCAA+TGG | 0.549979 | 8.3:-61047985 | None:intergenic |
AAACCTACCAAGGCTGGATG+TGG | 0.553582 | 8.3:-61048013 | None:intergenic |
TACTAGAACTTACTGAAAGA+CGG | 0.553968 | 8.3:-61046697 | None:intergenic |
AATATTCCAGATTATGAATG+TGG | 0.565218 | 8.3:+61047351 | MS.gene37561:CDS |
AGGCTGGATGTGGTGTGCGC+AGG | 0.568764 | 8.3:-61048003 | None:intergenic |
CATCCATGAATACAGGAGAA+TGG | 0.569815 | 8.3:+61047029 | MS.gene37561:CDS |
TCTATCAATACTAGTTATGA+CGG | 0.574247 | 8.3:+61046540 | MS.gene37561:intron |
AGTCAGCGGCGAAGCTGAGG+AGG | 0.585284 | 8.3:+61046044 | MS.gene37561:CDS |
ACACCACATCCAGCCTTGGT+AGG | 0.587197 | 8.3:+61048010 | MS.gene37561:CDS |
ATGACACTCCTTCCATATCA+CGG | 0.589305 | 8.3:+61046828 | MS.gene37561:CDS |
TCCACACTGCGAATCGCCAA+AGG | 0.589805 | 8.3:-61046913 | None:intergenic |
TGACACTCCTTCCATATCAC+GGG | 0.590869 | 8.3:+61046829 | MS.gene37561:CDS |
TGATCCAGATGCCGATCCGA+AGG | 0.594251 | 8.3:+61047852 | MS.gene37561:CDS |
TCCAGATTATGAATGTGGAA+GGG | 0.595446 | 8.3:+61047356 | MS.gene37561:CDS |
ACTTTGCTGTTCCAATGGCA+GGG | 0.595685 | 8.3:-61047980 | None:intergenic |
CCAAGAGCCCGTGATATGGA+AGG | 0.596254 | 8.3:-61046836 | None:intergenic |
CAGATACATCATCATTAACA+CGG | 0.604526 | 8.3:-61048041 | None:intergenic |
GGACAACTTGAGCTTTCCAA+GGG | 0.606529 | 8.3:-61047928 | None:intergenic |
AGATGTGATTATGGCAACCA+AGG | 0.609212 | 8.3:+61046991 | MS.gene37561:CDS |
ACCTTTGGCGATTCGCAGTG+TGG | 0.611049 | 8.3:+61046912 | MS.gene37561:CDS |
CACGGTTTATAAACCTACCA+AGG | 0.615074 | 8.3:-61048023 | None:intergenic |
TTACACCGGCTACTGGACCA+TGG | 0.619788 | 8.3:-61046069 | None:intergenic |
ACAGATAATGGATAATGCAT+CGG | 0.619908 | 8.3:-61046575 | None:intergenic |
AGTAGCCGGTGTAAAAGTGT+TGG | 0.620685 | 8.3:+61046078 | MS.gene37561:CDS |
GGTTAACCTTGTGCTTGTGG+AGG | 0.621345 | 8.3:+61046612 | MS.gene37561:CDS |
TGTATCTGAAAAGATCAGCC+AGG | 0.622080 | 8.3:+61048056 | MS.gene37561:CDS |
ATGTGGTTATCAACGATTCG+AGG | 0.622106 | 8.3:+61048273 | MS.gene37561:CDS |
GATGTGATTATGGCAACCAA+GGG | 0.624431 | 8.3:+61046992 | MS.gene37561:CDS |
CATTGCCTGCCAAATCAAAG+TGG | 0.629641 | 8.3:-61048464 | None:intergenic |
GAAGTGTCAAGAATATGCAC+AGG | 0.635227 | 8.3:-61047892 | None:intergenic |
GTTGAAATAGCAGGAATCGA+CGG | 0.638995 | 8.3:+61047226 | MS.gene37561:CDS |
GTCTGACGAGTTCCAGTCAG+CGG | 0.643494 | 8.3:+61046030 | MS.gene37561:CDS |
GCGAAGCTGAGGAGGTACCA+TGG | 0.649372 | 8.3:+61046052 | MS.gene37561:CDS |
CGGTGTAAAAGTGTTGGTTG+TGG | 0.652064 | 8.3:+61046084 | MS.gene37561:CDS |
AAGCAGTACCTGACTTCGTG+TGG | 0.652087 | 8.3:+61046960 | MS.gene37561:CDS |
TCTCGGACTAGCAAAAGTCA+AGG | 0.652838 | 8.3:+61047796 | MS.gene37561:CDS |
ATGTGAATGAATATGTGTCT+CGG | 0.664181 | 8.3:+61047779 | MS.gene37561:CDS |
ACTGAACCTCCACAAGCACA+AGG | 0.665135 | 8.3:-61046618 | None:intergenic |
ATTACTGAGATCCTTCGGAT+CGG | 0.667987 | 8.3:-61047863 | None:intergenic |
GTTCCATTGCAGTAGCACGT+AGG | 0.677485 | 8.3:-61047753 | None:intergenic |
CATGTGCGAACCATTATGCA+TGG | 0.704435 | 8.3:+61048152 | MS.gene37561:CDS |
TATCTGTGAGAAGAAGAATG+AGG | 0.710608 | 8.3:+61046591 | MS.gene37561:CDS |
TCGCACATGTCAAAGCTCAG+CGG | 0.744624 | 8.3:-61048138 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AACAAAAATGATAAATAAAA+AGG | - | chr8.3:61048400-61048419 | None:intergenic | 10.0% |
!! | GTTTCAAAAATAAATAAAAA+TGG | - | chr8.3:61046506-61046525 | None:intergenic | 10.0% |
!!! | TTTGTTTAAAATTTCTAATT+AGG | + | chr8.3:61048441-61048460 | MS.gene37561:intron | 10.0% |
!! | AGAATATCTGTAAATAATAA+TGG | - | chr8.3:61048377-61048396 | None:intergenic | 15.0% |
!! | ATCAATATGATTATTCATTA+TGG | + | chr8.3:61046318-61046337 | MS.gene37561:intron | 15.0% |
!!! | AATAATCATATTGATTTCTA+TGG | - | chr8.3:61046313-61046332 | None:intergenic | 15.0% |
!!! | TTTTTAATATTTGCTTCTTA+AGG | + | chr8.3:61046458-61046477 | MS.gene37561:intron | 15.0% |
!! | AAACAATCAAATGTACTATT+AGG | - | chr8.3:61047710-61047729 | None:intergenic | 20.0% |
!! | GAAGCAAATATTAAAAATCA+CGG | - | chr8.3:61046455-61046474 | None:intergenic | 20.0% |
!!! | AATTTCAGTTATGTTTTAGA+AGG | + | chr8.3:61047617-61047636 | MS.gene37561:intron | 20.0% |
!!! | GATAAGTTTTTTTATGCAAA+AGG | + | chr8.3:61048219-61048238 | MS.gene37561:CDS | 20.0% |
! | AATATTCCAGATTATGAATG+TGG | + | chr8.3:61047351-61047370 | MS.gene37561:CDS | 25.0% |
! | TCTATCAATACTAGTTATGA+CGG | + | chr8.3:61046540-61046559 | MS.gene37561:intron | 25.0% |
! | TGATTTACATATGAAGTTCT+TGG | + | chr8.3:61047198-61047217 | MS.gene37561:CDS | 25.0% |
!! | ATAATCTGGAATATTGTCTT+CGG | - | chr8.3:61047346-61047365 | None:intergenic | 25.0% |
!! | GCATTTTTGATACAATTGTT+CGG | - | chr8.3:61046126-61046145 | None:intergenic | 25.0% |
!! | TAAAGTCTGAAACTCAAAAT+AGG | + | chr8.3:61047517-61047536 | MS.gene37561:intron | 25.0% |
!! | TGGAAATATCTGAAACTTTA+AGG | - | chr8.3:61046266-61046285 | None:intergenic | 25.0% |
!!! | ATCAAAACTTGTTTTTCTAG+AGG | - | chr8.3:61047829-61047848 | None:intergenic | 25.0% |
!!! | TCAAAACTTGTTTTTCTAGA+GGG | - | chr8.3:61047828-61047847 | None:intergenic | 25.0% |
AAGGTAATTGACACTTATTC+TGG | + | chr8.3:61046164-61046183 | MS.gene37561:intron | 30.0% | |
ACAAAATTACTGAGATCCTT+CGG | - | chr8.3:61047871-61047890 | None:intergenic | 30.0% | |
ACAAACCTGTAAATAGTTTG+AGG | - | chr8.3:61047398-61047417 | None:intergenic | 30.0% | |
ATGGAAATCTATGATCTCAT+AGG | + | chr8.3:61046649-61046668 | MS.gene37561:CDS | 30.0% | |
ATGTGAATGAATATGTGTCT+CGG | + | chr8.3:61047779-61047798 | MS.gene37561:CDS | 30.0% | |
ATTCTTCTTCTCACAGATAA+TGG | - | chr8.3:61046590-61046609 | None:intergenic | 30.0% | |
CAGATACATCATCATTAACA+CGG | - | chr8.3:61048044-61048063 | None:intergenic | 30.0% | |
CTTCTTAAGGCTAAACTATT+GGG | + | chr8.3:61046471-61046490 | MS.gene37561:intron | 30.0% | |
TACTAGAACTTACTGAAAGA+CGG | - | chr8.3:61046700-61046719 | None:intergenic | 30.0% | |
TAGATAAACAGCTAGAAATG+TGG | - | chr8.3:61046286-61046305 | None:intergenic | 30.0% | |
TATGATCTCATAGGGAAAAT+GGG | + | chr8.3:61046658-61046677 | MS.gene37561:CDS | 30.0% | |
TCAAAAATGCTTCTTTCACT+TGG | + | chr8.3:61046136-61046155 | MS.gene37561:CDS | 30.0% | |
TGGAAATCTATGATCTCATA+GGG | + | chr8.3:61046650-61046669 | MS.gene37561:CDS | 30.0% | |
! | GTAAGTTCTAGTACTAACTT+TGG | + | chr8.3:61046707-61046726 | MS.gene37561:intron | 30.0% |
! | TACAGGTTTGTTCTTTGTAA+TGG | + | chr8.3:61047407-61047426 | MS.gene37561:intron | 30.0% |
! | TTTTTAATAACCGACATGTG+TGG | + | chr8.3:61047468-61047487 | MS.gene37561:intron | 30.0% |
!! | ACAGATAATGGATAATGCAT+CGG | - | chr8.3:61046578-61046597 | None:intergenic | 30.0% |
!! | AGTACTGAGTTATCTTTTTC+AGG | - | chr8.3:61047148-61047167 | None:intergenic | 30.0% |
!! | CAATGACTGTTGTTTCATAT+CGG | - | chr8.3:61046940-61046959 | None:intergenic | 30.0% |
!!! | TCATAGTATGCTTTTTCATC+TGG | - | chr8.3:61048201-61048220 | None:intergenic | 30.0% |
AAACCATTCTCCTGTATTCA+TGG | - | chr8.3:61047035-61047054 | None:intergenic | 35.0% | |
AAACTCAAAATAGGCACACT+TGG | + | chr8.3:61047526-61047545 | MS.gene37561:intron | 35.0% | |
AACTCAAAATAGGCACACTT+GGG | + | chr8.3:61047527-61047546 | MS.gene37561:intron | 35.0% | |
AAGTGCAAATGGTAAAGAAC+AGG | + | chr8.3:61047117-61047136 | MS.gene37561:CDS | 35.0% | |
ACTAGAACTTACTGAAAGAC+GGG | - | chr8.3:61046699-61046718 | None:intergenic | 35.0% | |
AGATCATAGATTTCCATGTC+TGG | - | chr8.3:61046646-61046665 | None:intergenic | 35.0% | |
ATTAATTTCTGCTGTGCTAG+TGG | + | chr8.3:61047273-61047292 | MS.gene37561:intron | 35.0% | |
CTATGATCTCATAGGGAAAA+TGG | + | chr8.3:61046657-61046676 | MS.gene37561:CDS | 35.0% | |
CTGATGAGGATTTGAATATG+TGG | + | chr8.3:61048256-61048275 | MS.gene37561:CDS | 35.0% | |
CTTCTTTCACTTGGATATGA+AGG | + | chr8.3:61046145-61046164 | MS.gene37561:CDS | 35.0% | |
GCTTCTTAAGGCTAAACTAT+TGG | + | chr8.3:61046470-61046489 | MS.gene37561:intron | 35.0% | |
GTTCTTTACCATTTGCACTT+CGG | - | chr8.3:61047117-61047136 | None:intergenic | 35.0% | |
TATCTGTGAGAAGAAGAATG+AGG | + | chr8.3:61046591-61046610 | MS.gene37561:CDS | 35.0% | |
TCCAGATTATGAATGTGGAA+GGG | + | chr8.3:61047356-61047375 | MS.gene37561:CDS | 35.0% | |
TGTAGATCAGAAATCTGAAC+TGG | - | chr8.3:61046890-61046909 | None:intergenic | 35.0% | |
TTCCAGATTATGAATGTGGA+AGG | + | chr8.3:61047355-61047374 | MS.gene37561:CDS | 35.0% | |
TTTCTGATCTACATGACCTT+TGG | + | chr8.3:61046897-61046916 | MS.gene37561:CDS | 35.0% | |
! | CAAAATGCAATTGGTCTAGA+AGG | + | chr8.3:61047058-61047077 | MS.gene37561:CDS | 35.0% |
! | CTAATTAGGCCACTTTGATT+TGG | + | chr8.3:61048455-61048474 | MS.gene37561:intron | 35.0% |
! | CTTCTAGACCAATTGCATTT+TGG | - | chr8.3:61047060-61047079 | None:intergenic | 35.0% |
! | TTTTCTCCTGCATTCAAAGA+TGG | - | chr8.3:61047088-61047107 | None:intergenic | 35.0% |
!! | TCTGTTTCTGCATTATCATG+TGG | + | chr8.3:61047670-61047689 | MS.gene37561:intron | 35.0% |
!! | TGGCTTTCTAAAACACCATT+TGG | - | chr8.3:61046870-61046889 | None:intergenic | 35.0% |
!!! | TAGTATGCTTTTTCATCTGG+TGG | - | chr8.3:61048198-61048217 | None:intergenic | 35.0% |
AACTCAGCTGTTTACTGATG+AGG | + | chr8.3:61048242-61048261 | MS.gene37561:CDS | 40.0% | |
AAGACTTTCCGAAGTGCAAA+TGG | + | chr8.3:61047106-61047125 | MS.gene37561:CDS | 40.0% | |
ACCCTTCCACATTCATAATC+TGG | - | chr8.3:61047360-61047379 | None:intergenic | 40.0% | |
ACTACTACACTCACATTTCG+TGG | + | chr8.3:61046237-61046256 | MS.gene37561:intron | 40.0% | |
ACTCAAAATAGGCACACTTG+GGG | + | chr8.3:61047528-61047547 | MS.gene37561:intron | 40.0% | |
AGATGTGATTATGGCAACCA+AGG | + | chr8.3:61046991-61047010 | MS.gene37561:CDS | 40.0% | |
ATAACTCAGTACTCCTGAAC+AGG | + | chr8.3:61047155-61047174 | MS.gene37561:CDS | 40.0% | |
ATGACACTCCTTCCATATCA+CGG | + | chr8.3:61046828-61046847 | MS.gene37561:CDS | 40.0% | |
ATGTGGTTATCAACGATTCG+AGG | + | chr8.3:61048273-61048292 | MS.gene37561:CDS | 40.0% | |
ATTACTGAGATCCTTCGGAT+CGG | - | chr8.3:61047866-61047885 | None:intergenic | 40.0% | |
ATTCATGGATGGTTGGCATT+TGG | - | chr8.3:61047020-61047039 | None:intergenic | 40.0% | |
CAAACTTTCGTAATCCCCAA+TGG | - | chr8.3:61047576-61047595 | None:intergenic | 40.0% | |
CACGCGCAATGATATATTAC+TGG | - | chr8.3:61048309-61048328 | None:intergenic | 40.0% | |
CACGGTTTATAAACCTACCA+AGG | - | chr8.3:61048026-61048045 | None:intergenic | 40.0% | |
CATCCATGAATACAGGAGAA+TGG | + | chr8.3:61047029-61047048 | MS.gene37561:CDS | 40.0% | |
CATCTGCTGTATTCAAAACC+TGG | - | chr8.3:61048077-61048096 | None:intergenic | 40.0% | |
CATTCTCCTGTATTCATGGA+TGG | - | chr8.3:61047031-61047050 | None:intergenic | 40.0% | |
GAGTGCCTCAAACTATTTAC+AGG | + | chr8.3:61047390-61047409 | MS.gene37561:CDS | 40.0% | |
GATGGAGAAGTTTCTAATGC+AGG | + | chr8.3:61048093-61048112 | MS.gene37561:CDS | 40.0% | |
GATGTGATTATGGCAACCAA+GGG | + | chr8.3:61046992-61047011 | MS.gene37561:CDS | 40.0% | |
GCATCTGTCAGATGTGATTA+TGG | + | chr8.3:61046982-61047001 | MS.gene37561:CDS | 40.0% | |
GTTGAAATAGCAGGAATCGA+CGG | + | chr8.3:61047226-61047245 | MS.gene37561:CDS | 40.0% | |
GTTTATAAACCTACCAAGGC+TGG | - | chr8.3:61048022-61048041 | None:intergenic | 40.0% | |
TGAACAGGAAAAGGAAAAGC+TGG | + | chr8.3:61047170-61047189 | MS.gene37561:CDS | 40.0% | |
TGGTTTCGCCAAAATGCAAT+TGG | + | chr8.3:61047049-61047068 | MS.gene37561:CDS | 40.0% | |
TGTATCTGAAAAGATCAGCC+AGG | + | chr8.3:61048056-61048075 | MS.gene37561:CDS | 40.0% | |
TTCATGGATGGTTGGCATTT+GGG | - | chr8.3:61047019-61047038 | None:intergenic | 40.0% | |
TTGGAAGCTGTTGAAATAGC+AGG | + | chr8.3:61047217-61047236 | MS.gene37561:CDS | 40.0% | |
TTTACATCAAGCAGTACGCT+TGG | - | chr8.3:61047501-61047520 | None:intergenic | 40.0% | |
! | AGCTTTTCCTTTTCCTGTTC+AGG | - | chr8.3:61047171-61047190 | None:intergenic | 40.0% |
! | ATAGTTTGAGGCACTCTCTT+TGG | - | chr8.3:61047386-61047405 | None:intergenic | 40.0% |
! | CACAACCAACACTTTTACAC+CGG | - | chr8.3:61046086-61046105 | None:intergenic | 40.0% |
! | GAAGTGTCAAGAATATGCAC+AGG | - | chr8.3:61047895-61047914 | None:intergenic | 40.0% |
! | TGGACATTTTCCACACATGT+CGG | - | chr8.3:61047481-61047500 | None:intergenic | 40.0% |
!! | ATAGGAAGCACCATGCATAA+TGG | - | chr8.3:61048165-61048184 | None:intergenic | 40.0% |
!!! | CAGGTTTTGAATACAGCAGA+TGG | + | chr8.3:61048075-61048094 | MS.gene37561:CDS | 40.0% |
!!! | TTCTGCTACTTTTCTTCCCT+TGG | + | chr8.3:61047912-61047931 | MS.gene37561:CDS | 40.0% |
AAAACCAAGAGCCCGTGATA+TGG | - | chr8.3:61046843-61046862 | None:intergenic | 45.0% | |
ACTTTCGTAATCCCCAATGG+TGG | - | chr8.3:61047573-61047592 | None:intergenic | 45.0% | |
CAGTACTCCTGAACAGGAAA+AGG | + | chr8.3:61047161-61047180 | MS.gene37561:CDS | 45.0% | |
CATGTGCGAACCATTATGCA+TGG | + | chr8.3:61048152-61048171 | MS.gene37561:CDS | 45.0% | |
CATTGCCTGCCAAATCAAAG+TGG | - | chr8.3:61048467-61048486 | None:intergenic | 45.0% | |
CTCCTGCATTCAAAGATGGT+TGG | - | chr8.3:61047084-61047103 | None:intergenic | 45.0% | |
CTCCTGTATTCATGGATGGT+TGG | - | chr8.3:61047027-61047046 | None:intergenic | 45.0% | |
CTTTCGTAATCCCCAATGGT+GGG | - | chr8.3:61047572-61047591 | None:intergenic | 45.0% | |
GGACAACTTGAGCTTTCCAA+GGG | - | chr8.3:61047931-61047950 | None:intergenic | 45.0% | |
GTTGGTTGTGGATGCTAGTT+CGG | + | chr8.3:61046096-61046115 | MS.gene37561:CDS | 45.0% | |
TGACACTCCTTCCATATCAC+GGG | + | chr8.3:61046829-61046848 | MS.gene37561:CDS | 45.0% | |
TGAGGTTAACCTTGTGCTTG+TGG | + | chr8.3:61046609-61046628 | MS.gene37561:CDS | 45.0% | |
TGCCAACCATCCATGAATAC+AGG | + | chr8.3:61047022-61047041 | MS.gene37561:CDS | 45.0% | |
TTGTCGTTCTTGTGTGAAGC+TGG | + | chr8.3:61047319-61047338 | MS.gene37561:intron | 45.0% | |
! | AGTAGCCGGTGTAAAAGTGT+TGG | + | chr8.3:61046078-61046097 | MS.gene37561:CDS | 45.0% |
! | ATATCACGGGCTCTTGGTTT+TGG | + | chr8.3:61046842-61046861 | MS.gene37561:CDS | 45.0% |
! | CTTGGAAAGCTCAAGTTGTC+CGG | + | chr8.3:61047930-61047949 | MS.gene37561:CDS | 45.0% |
! | TTTTGCCTGAAAGGTGACTC+CGG | - | chr8.3:61047952-61047971 | None:intergenic | 45.0% |
!! | AACACTTTTACACCGGCTAC+TGG | - | chr8.3:61046079-61046098 | None:intergenic | 45.0% |
!! | ACTTTGCTGTTCCAATGGCA+GGG | - | chr8.3:61047983-61048002 | None:intergenic | 45.0% |
!! | CGGTGTAAAAGTGTTGGTTG+TGG | + | chr8.3:61046084-61046103 | MS.gene37561:CDS | 45.0% |
!! | GACAGCTGATTTTGCCTGAA+AGG | - | chr8.3:61047961-61047980 | None:intergenic | 45.0% |
!! | TCTCGGACTAGCAAAAGTCA+AGG | + | chr8.3:61047796-61047815 | MS.gene37561:CDS | 45.0% |
!! | TTAGGCCACTTTGATTTGGC+AGG | + | chr8.3:61048459-61048478 | MS.gene37561:intron | 45.0% |
!!! | CTCTTGGTTTTGGAGCCAAA+TGG | + | chr8.3:61046852-61046871 | MS.gene37561:CDS | 45.0% |
!!! | GCTTTTTCATCTGGTGGTAG+TGG | - | chr8.3:61048192-61048211 | None:intergenic | 45.0% |
!!! | TTTTCATCTGGTGGTAGTGG+CGG | - | chr8.3:61048189-61048208 | None:intergenic | 45.0% |
!!! | ATTTTTTATATTTATATTTC+TGG | + | chr8.3:61046199-61046218 | MS.gene37561:intron | 5.0% |
AAACCTACCAAGGCTGGATG+TGG | - | chr8.3:61048016-61048035 | None:intergenic | 50.0% | |
AAATCAGCTGTCCCTGCCAT+TGG | + | chr8.3:61047969-61047988 | MS.gene37561:CDS | 50.0% | |
AAGCAGTACCTGACTTCGTG+TGG | + | chr8.3:61046960-61046979 | MS.gene37561:CDS | 50.0% | |
ACTGAACCTCCACAAGCACA+AGG | - | chr8.3:61046621-61046640 | None:intergenic | 50.0% | |
ATCTCAGCGACAAGCATGTG+AGG | - | chr8.3:61046751-61046770 | None:intergenic | 50.0% | |
CGGACAACTTGAGCTTTCCA+AGG | - | chr8.3:61047932-61047951 | None:intergenic | 50.0% | |
GGCCAACCATCTTTGAATGC+AGG | + | chr8.3:61047079-61047098 | MS.gene37561:CDS | 50.0% | |
GGTTAACCTTGTGCTTGTGG+AGG | + | chr8.3:61046612-61046631 | MS.gene37561:CDS | 50.0% | |
GTTCCATTGCAGTAGCACGT+AGG | - | chr8.3:61047756-61047775 | None:intergenic | 50.0% | |
TATATCATTGCGCGTGCGCT+CGG | + | chr8.3:61048313-61048332 | MS.gene37561:intron | 50.0% | |
TCGCACATGTCAAAGCTCAG+CGG | - | chr8.3:61048141-61048160 | None:intergenic | 50.0% | |
! | GAACCTACGTGCTACTGCAA+TGG | + | chr8.3:61047750-61047769 | MS.gene37561:CDS | 50.0% |
!! | GACTTTGCTGTTCCAATGGC+AGG | - | chr8.3:61047984-61048003 | None:intergenic | 50.0% |
!! | GCAGGACTTTGCTGTTCCAA+TGG | - | chr8.3:61047988-61048007 | None:intergenic | 50.0% |
ACACCACATCCAGCCTTGGT+AGG | + | chr8.3:61048010-61048029 | MS.gene37561:CDS | 55.0% | |
ACCTTTGGCGATTCGCAGTG+TGG | + | chr8.3:61046912-61046931 | MS.gene37561:CDS | 55.0% | |
AGATCCTTCGGATCGGCATC+TGG | - | chr8.3:61047859-61047878 | None:intergenic | 55.0% | |
AGGTACCATGGTCCAGTAGC+CGG | + | chr8.3:61046064-61046083 | MS.gene37561:CDS | 55.0% | |
ATAGGCACACTTGGGGCAAC+TGG | + | chr8.3:61047535-61047554 | MS.gene37561:intron | 55.0% | |
ATATCATTGCGCGTGCGCTC+GGG | + | chr8.3:61048314-61048333 | MS.gene37561:intron | 55.0% | |
CCAAGAGCCCGTGATATGGA+AGG | - | chr8.3:61046839-61046858 | None:intergenic | 55.0% | |
CCTTCCATATCACGGGCTCT+TGG | + | chr8.3:61046836-61046855 | MS.gene37561:CDS | 55.0% | |
GACAGATGCCACACGAAGTC+AGG | - | chr8.3:61046971-61046990 | None:intergenic | 55.0% | |
GGAGGTTCAGTTGCCAGACA+TGG | + | chr8.3:61046630-61046649 | MS.gene37561:CDS | 55.0% | |
GTCTGACGAGTTCCAGTCAG+CGG | + | chr8.3:61046030-61046049 | MS.gene37561:CDS | 55.0% | |
GTTGTCCGGAGTCACCTTTC+AGG | + | chr8.3:61047944-61047963 | MS.gene37561:CDS | 55.0% | |
TCCACACTGCGAATCGCCAA+AGG | - | chr8.3:61046916-61046935 | None:intergenic | 55.0% | |
TGATCCAGATGCCGATCCGA+AGG | + | chr8.3:61047852-61047871 | MS.gene37561:CDS | 55.0% | |
TGTAGACTCACTCGTGCTCG+CGG | - | chr8.3:61048340-61048359 | None:intergenic | 55.0% | |
! | TGGTTGGCATTTGGGACCCT+TGG | - | chr8.3:61047011-61047030 | None:intergenic | 55.0% |
! | TTACACCGGCTACTGGACCA+TGG | - | chr8.3:61046072-61046091 | None:intergenic | 55.0% |
TGCTCGAGGCTCCCACCATT+GGG | + | chr8.3:61047558-61047577 | MS.gene37561:intron | 60.0% | |
!! | GCGAAGCTGAGGAGGTACCA+TGG | + | chr8.3:61046052-61046071 | MS.gene37561:CDS | 60.0% |
!! | TCTGGTGGTAGTGGCGGCAT+AGG | - | chr8.3:61048183-61048202 | None:intergenic | 60.0% |
AGGCTGGATGTGGTGTGCGC+AGG | - | chr8.3:61048006-61048025 | None:intergenic | 65.0% | |
AGTCAGCGGCGAAGCTGAGG+AGG | + | chr8.3:61046044-61046063 | MS.gene37561:CDS | 65.0% | |
CTTGGGGCAACTGGTGCTCG+AGG | + | chr8.3:61047544-61047563 | MS.gene37561:intron | 65.0% | |
GCGCACACCACATCCAGCCT+TGG | + | chr8.3:61048006-61048025 | MS.gene37561:CDS | 65.0% | |
GCTCGAGGCTCCCACCATTG+GGG | + | chr8.3:61047559-61047578 | MS.gene37561:intron | 65.0% | |
GTGCTCGAGGCTCCCACCAT+TGG | + | chr8.3:61047557-61047576 | MS.gene37561:intron | 65.0% | |
TCCAGTCAGCGGCGAAGCTG+AGG | + | chr8.3:61046041-61046060 | MS.gene37561:CDS | 65.0% | |
TCCTCAGCTTCGCCGCTGAC+TGG | - | chr8.3:61046045-61046064 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 61046025 | 61048503 | 61046025 | ID=MS.gene37561 |
chr8.3 | mRNA | 61046025 | 61048503 | 61046025 | ID=MS.gene37561.t1;Parent=MS.gene37561 |
chr8.3 | exon | 61046025 | 61046166 | 61046025 | ID=MS.gene37561.t1.exon1;Parent=MS.gene37561.t1 |
chr8.3 | CDS | 61046025 | 61046166 | 61046025 | ID=cds.MS.gene37561.t1;Parent=MS.gene37561.t1 |
chr8.3 | exon | 61046554 | 61046706 | 61046554 | ID=MS.gene37561.t1.exon2;Parent=MS.gene37561.t1 |
chr8.3 | CDS | 61046554 | 61046706 | 61046554 | ID=cds.MS.gene37561.t1;Parent=MS.gene37561.t1 |
chr8.3 | exon | 61046810 | 61047247 | 61046810 | ID=MS.gene37561.t1.exon3;Parent=MS.gene37561.t1 |
chr8.3 | CDS | 61046810 | 61047247 | 61046810 | ID=cds.MS.gene37561.t1;Parent=MS.gene37561.t1 |
chr8.3 | exon | 61047338 | 61047411 | 61047338 | ID=MS.gene37561.t1.exon4;Parent=MS.gene37561.t1 |
chr8.3 | CDS | 61047338 | 61047411 | 61047338 | ID=cds.MS.gene37561.t1;Parent=MS.gene37561.t1 |
chr8.3 | exon | 61047733 | 61048294 | 61047733 | ID=MS.gene37561.t1.exon5;Parent=MS.gene37561.t1 |
chr8.3 | CDS | 61047733 | 61048294 | 61047733 | ID=cds.MS.gene37561.t1;Parent=MS.gene37561.t1 |
chr8.3 | exon | 61048463 | 61048503 | 61048463 | ID=MS.gene37561.t1.exon6;Parent=MS.gene37561.t1 |
chr8.3 | CDS | 61048463 | 61048503 | 61048463 | ID=cds.MS.gene37561.t1;Parent=MS.gene37561.t1 |
Gene Sequence |
Protein sequence |