AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37561


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37561.t1 MTR_8g032710 91.685 457 33 2 1 457 1 452 0.0 858
MS.gene37561.t1 MTR_4g121020 31.295 278 152 7 20 287 33 281 2.78e-28 118
MS.gene37561.t1 MTR_4g121020 31.295 278 152 7 20 287 33 281 2.92e-28 118
MS.gene37561.t1 MTR_3g086100 30.620 258 153 8 20 272 15 251 3.67e-26 112
MS.gene37561.t1 MTR_8g079940 31.102 254 155 9 20 272 27 261 4.89e-26 111
MS.gene37561.t1 MTR_4g131600 29.921 254 155 5 20 272 22 253 1.52e-25 110
MS.gene37561.t1 MTR_1g032570 30.739 257 157 5 20 272 13 252 2.47e-25 109
MS.gene37561.t1 MTR_3g106220 28.125 256 164 6 21 272 11 250 9.38e-24 105
MS.gene37561.t1 MTR_2g034960 28.253 269 171 5 20 287 31 278 3.78e-23 103
MS.gene37561.t1 MTR_4g131570 28.016 257 167 5 20 275 19 258 1.11e-22 101
MS.gene37561.t1 MTR_1g013170 28.352 261 153 6 21 272 8 243 3.86e-22 99.4
MS.gene37561.t1 MTR_4g131580 26.923 260 161 4 21 275 20 255 4.86e-22 99.8
MS.gene37561.t1 MTR_2g450070 27.969 261 163 7 21 272 21 265 7.11e-22 99.4
MS.gene37561.t1 MTR_7g117705 26.855 283 173 7 21 294 8 265 8.88e-21 95.1
MS.gene37561.t1 MTR_1g013180 28.571 266 168 6 21 283 159 405 3.36e-20 94.0
MS.gene37561.t1 MTR_4g021760 26.482 253 140 6 21 272 14 221 1.63e-18 86.7
MS.gene37561.t1 MTR_4g021790 24.906 265 151 7 20 283 12 229 1.41e-17 83.2
MS.gene37561.t1 MTR_8g105600 27.106 273 159 8 20 284 11 251 8.50e-16 80.1
MS.gene37561.t1 MTR_1g032570 28.000 200 123 5 77 272 1 183 1.28e-13 73.6
MS.gene37561.t1 MTR_2g450070 30.252 119 82 1 21 139 21 138 2.62e-13 72.8
MS.gene37561.t1 MTR_6g016850 34.426 122 76 3 20 139 11 130 8.35e-13 67.0
MS.gene37561.t1 MTR_3g086100 27.363 201 120 8 77 272 1 180 2.41e-12 69.3
MS.gene37561.t1 MTR_7g490310 36.090 133 61 5 24 134 11 141 7.93e-12 65.5
MS.gene37561.t1 MTR_3g102600 30.328 122 84 1 21 142 11 131 8.02e-12 65.5
MS.gene37561.t1 MTR_3g102600 30.328 122 84 1 21 142 11 131 8.92e-12 64.3
MS.gene37561.t1 MTR_8g093040 32.258 124 80 2 22 142 18 140 1.17e-11 65.5
MS.gene37561.t1 MTR_4g061360 30.469 128 84 3 18 142 85 210 9.73e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37561.t1 AT3G16857 27.473 273 185 6 20 285 35 301 1.48e-25 110
MS.gene37561.t1 AT3G16857 27.473 273 185 6 20 285 35 301 1.52e-25 110
MS.gene37561.t1 AT2G25180 27.586 261 151 6 21 272 16 247 2.19e-23 103
MS.gene37561.t1 AT1G67710 28.897 263 152 8 20 272 9 246 5.44e-22 99.4
MS.gene37561.t1 AT4G31920 25.781 256 156 4 21 275 16 238 2.35e-21 97.4
MS.gene37561.t1 AT5G58080 27.138 269 171 8 5 272 2 246 1.10e-19 92.4
MS.gene37561.t1 AT3G16857 25.847 236 162 6 57 285 2 231 9.54e-18 86.7
MS.gene37561.t1 AT1G49190 26.374 273 172 10 20 285 32 282 1.30e-17 85.1
MS.gene37561.t1 AT2G01760 35.537 121 76 2 20 139 9 128 4.72e-15 77.0
MS.gene37561.t1 AT5G49240 23.864 264 154 6 21 269 41 272 1.31e-14 74.7
MS.gene37561.t1 AT2G40970 34.074 135 72 3 219 351 103 222 4.04e-12 66.6
MS.gene37561.t1 AT2G27070 25.091 275 175 10 19 272 13 277 8.40e-12 67.8
MS.gene37561.t1 AT4G00760 29.064 203 135 5 40 238 1 198 1.77e-11 65.9

Find 110 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTAGACCAATTGCATTT+TGG 0.197316 8.3:-61047057 None:intergenic
CTATGATCTCATAGGGAAAA+TGG 0.221957 8.3:+61046657 MS.gene37561:CDS
ATATCACGGGCTCTTGGTTT+TGG 0.233266 8.3:+61046842 MS.gene37561:CDS
GAGTGCCTCAAACTATTTAC+AGG 0.272286 8.3:+61047390 MS.gene37561:CDS
GTTGTCCGGAGTCACCTTTC+AGG 0.273076 8.3:+61047944 MS.gene37561:CDS
ATTCTTCTTCTCACAGATAA+TGG 0.274227 8.3:-61046587 None:intergenic
TGATTTACATATGAAGTTCT+TGG 0.275930 8.3:+61047198 MS.gene37561:CDS
ATAGTTTGAGGCACTCTCTT+TGG 0.318103 8.3:-61047383 None:intergenic
TTCATGGATGGTTGGCATTT+GGG 0.333819 8.3:-61047016 None:intergenic
ATTCATGGATGGTTGGCATT+TGG 0.334762 8.3:-61047017 None:intergenic
CTAATTAGGCCACTTTGATT+TGG 0.347358 8.3:+61048455 MS.gene37561:intron
ATGGAAATCTATGATCTCAT+AGG 0.353225 8.3:+61046649 MS.gene37561:CDS
AAAACCAAGAGCCCGTGATA+TGG 0.366143 8.3:-61046840 None:intergenic
AGATCCTTCGGATCGGCATC+TGG 0.369128 8.3:-61047856 None:intergenic
ACCCTTCCACATTCATAATC+TGG 0.374739 8.3:-61047357 None:intergenic
TGGCTTTCTAAAACACCATT+TGG 0.375414 8.3:-61046867 None:intergenic
CTTCTTTCACTTGGATATGA+AGG 0.378032 8.3:+61046145 MS.gene37561:CDS
CAATGACTGTTGTTTCATAT+CGG 0.387086 8.3:-61046937 None:intergenic
GCATCTGTCAGATGTGATTA+TGG 0.389198 8.3:+61046982 MS.gene37561:CDS
TCCTCAGCTTCGCCGCTGAC+TGG 0.399441 8.3:-61046042 None:intergenic
AAACCATTCTCCTGTATTCA+TGG 0.400145 8.3:-61047032 None:intergenic
CTCCTGCATTCAAAGATGGT+TGG 0.406146 8.3:-61047081 None:intergenic
TGGTTGGCATTTGGGACCCT+TGG 0.407552 8.3:-61047008 None:intergenic
TTTCTGATCTACATGACCTT+TGG 0.412759 8.3:+61046897 MS.gene37561:CDS
CAAAATGCAATTGGTCTAGA+AGG 0.418166 8.3:+61047058 MS.gene37561:CDS
GACTTTGCTGTTCCAATGGC+AGG 0.429908 8.3:-61047981 None:intergenic
TTAGGCCACTTTGATTTGGC+AGG 0.436132 8.3:+61048459 MS.gene37561:intron
CCTTCCATATCACGGGCTCT+TGG 0.439741 8.3:+61046836 MS.gene37561:CDS
ATAACTCAGTACTCCTGAAC+AGG 0.440547 8.3:+61047155 MS.gene37561:CDS
CAGTACTCCTGAACAGGAAA+AGG 0.443080 8.3:+61047161 MS.gene37561:CDS
CTTGGAAAGCTCAAGTTGTC+CGG 0.445175 8.3:+61047930 MS.gene37561:CDS
GACAGATGCCACACGAAGTC+AGG 0.457217 8.3:-61046968 None:intergenic
ATAATCTGGAATATTGTCTT+CGG 0.459039 8.3:-61047343 None:intergenic
CTCCTGTATTCATGGATGGT+TGG 0.460192 8.3:-61047024 None:intergenic
TATGATCTCATAGGGAAAAT+GGG 0.462257 8.3:+61046658 MS.gene37561:CDS
GTTGGTTGTGGATGCTAGTT+CGG 0.466592 8.3:+61046096 MS.gene37561:CDS
TTGGAAGCTGTTGAAATAGC+AGG 0.471879 8.3:+61047217 MS.gene37561:CDS
AAATCAGCTGTCCCTGCCAT+TGG 0.472311 8.3:+61047969 MS.gene37561:CDS
TGAACAGGAAAAGGAAAAGC+TGG 0.472904 8.3:+61047170 MS.gene37561:CDS
TGGTTTCGCCAAAATGCAAT+TGG 0.475231 8.3:+61047049 MS.gene37561:CDS
AAGTGCAAATGGTAAAGAAC+AGG 0.480421 8.3:+61047117 MS.gene37561:CDS
AGATCATAGATTTCCATGTC+TGG 0.480523 8.3:-61046643 None:intergenic
TGTAGATCAGAAATCTGAAC+TGG 0.485157 8.3:-61046887 None:intergenic
AAGACTTTCCGAAGTGCAAA+TGG 0.488422 8.3:+61047106 MS.gene37561:CDS
TCCAGTCAGCGGCGAAGCTG+AGG 0.492869 8.3:+61046041 MS.gene37561:CDS
TGCCAACCATCCATGAATAC+AGG 0.500767 8.3:+61047022 MS.gene37561:CDS
ACAAACCTGTAAATAGTTTG+AGG 0.502869 8.3:-61047395 None:intergenic
CATCTGCTGTATTCAAAACC+TGG 0.512978 8.3:-61048074 None:intergenic
CTGATGAGGATTTGAATATG+TGG 0.519558 8.3:+61048256 MS.gene37561:CDS
TCTGGTGGTAGTGGCGGCAT+AGG 0.521933 8.3:-61048180 None:intergenic
ATAGGAAGCACCATGCATAA+TGG 0.522991 8.3:-61048162 None:intergenic
GGCCAACCATCTTTGAATGC+AGG 0.525238 8.3:+61047079 MS.gene37561:CDS
GATGGAGAAGTTTCTAATGC+AGG 0.527317 8.3:+61048093 MS.gene37561:CDS
TTCCAGATTATGAATGTGGA+AGG 0.529710 8.3:+61047355 MS.gene37561:CDS
GAACCTACGTGCTACTGCAA+TGG 0.529949 8.3:+61047750 MS.gene37561:CDS
CATTCTCCTGTATTCATGGA+TGG 0.530842 8.3:-61047028 None:intergenic
AACTCAGCTGTTTACTGATG+AGG 0.532043 8.3:+61048242 MS.gene37561:CDS
GGAGGTTCAGTTGCCAGACA+TGG 0.533668 8.3:+61046630 MS.gene37561:CDS
ACAAAATTACTGAGATCCTT+CGG 0.535642 8.3:-61047868 None:intergenic
AGGTACCATGGTCCAGTAGC+CGG 0.537071 8.3:+61046064 MS.gene37561:CDS
GTTCTTTACCATTTGCACTT+CGG 0.537752 8.3:-61047114 None:intergenic
TGAGGTTAACCTTGTGCTTG+TGG 0.538862 8.3:+61046609 MS.gene37561:CDS
TGGAAATCTATGATCTCATA+GGG 0.539851 8.3:+61046650 MS.gene37561:CDS
GTTTATAAACCTACCAAGGC+TGG 0.543151 8.3:-61048019 None:intergenic
ACTAGAACTTACTGAAAGAC+GGG 0.545088 8.3:-61046696 None:intergenic
GCGCACACCACATCCAGCCT+TGG 0.545507 8.3:+61048006 MS.gene37561:CDS
CGGACAACTTGAGCTTTCCA+AGG 0.549307 8.3:-61047929 None:intergenic
GCAGGACTTTGCTGTTCCAA+TGG 0.549979 8.3:-61047985 None:intergenic
AAACCTACCAAGGCTGGATG+TGG 0.553582 8.3:-61048013 None:intergenic
TACTAGAACTTACTGAAAGA+CGG 0.553968 8.3:-61046697 None:intergenic
AATATTCCAGATTATGAATG+TGG 0.565218 8.3:+61047351 MS.gene37561:CDS
AGGCTGGATGTGGTGTGCGC+AGG 0.568764 8.3:-61048003 None:intergenic
CATCCATGAATACAGGAGAA+TGG 0.569815 8.3:+61047029 MS.gene37561:CDS
TCTATCAATACTAGTTATGA+CGG 0.574247 8.3:+61046540 MS.gene37561:intron
AGTCAGCGGCGAAGCTGAGG+AGG 0.585284 8.3:+61046044 MS.gene37561:CDS
ACACCACATCCAGCCTTGGT+AGG 0.587197 8.3:+61048010 MS.gene37561:CDS
ATGACACTCCTTCCATATCA+CGG 0.589305 8.3:+61046828 MS.gene37561:CDS
TCCACACTGCGAATCGCCAA+AGG 0.589805 8.3:-61046913 None:intergenic
TGACACTCCTTCCATATCAC+GGG 0.590869 8.3:+61046829 MS.gene37561:CDS
TGATCCAGATGCCGATCCGA+AGG 0.594251 8.3:+61047852 MS.gene37561:CDS
TCCAGATTATGAATGTGGAA+GGG 0.595446 8.3:+61047356 MS.gene37561:CDS
ACTTTGCTGTTCCAATGGCA+GGG 0.595685 8.3:-61047980 None:intergenic
CCAAGAGCCCGTGATATGGA+AGG 0.596254 8.3:-61046836 None:intergenic
CAGATACATCATCATTAACA+CGG 0.604526 8.3:-61048041 None:intergenic
GGACAACTTGAGCTTTCCAA+GGG 0.606529 8.3:-61047928 None:intergenic
AGATGTGATTATGGCAACCA+AGG 0.609212 8.3:+61046991 MS.gene37561:CDS
ACCTTTGGCGATTCGCAGTG+TGG 0.611049 8.3:+61046912 MS.gene37561:CDS
CACGGTTTATAAACCTACCA+AGG 0.615074 8.3:-61048023 None:intergenic
TTACACCGGCTACTGGACCA+TGG 0.619788 8.3:-61046069 None:intergenic
ACAGATAATGGATAATGCAT+CGG 0.619908 8.3:-61046575 None:intergenic
AGTAGCCGGTGTAAAAGTGT+TGG 0.620685 8.3:+61046078 MS.gene37561:CDS
GGTTAACCTTGTGCTTGTGG+AGG 0.621345 8.3:+61046612 MS.gene37561:CDS
TGTATCTGAAAAGATCAGCC+AGG 0.622080 8.3:+61048056 MS.gene37561:CDS
ATGTGGTTATCAACGATTCG+AGG 0.622106 8.3:+61048273 MS.gene37561:CDS
GATGTGATTATGGCAACCAA+GGG 0.624431 8.3:+61046992 MS.gene37561:CDS
CATTGCCTGCCAAATCAAAG+TGG 0.629641 8.3:-61048464 None:intergenic
GAAGTGTCAAGAATATGCAC+AGG 0.635227 8.3:-61047892 None:intergenic
GTTGAAATAGCAGGAATCGA+CGG 0.638995 8.3:+61047226 MS.gene37561:CDS
GTCTGACGAGTTCCAGTCAG+CGG 0.643494 8.3:+61046030 MS.gene37561:CDS
GCGAAGCTGAGGAGGTACCA+TGG 0.649372 8.3:+61046052 MS.gene37561:CDS
CGGTGTAAAAGTGTTGGTTG+TGG 0.652064 8.3:+61046084 MS.gene37561:CDS
AAGCAGTACCTGACTTCGTG+TGG 0.652087 8.3:+61046960 MS.gene37561:CDS
TCTCGGACTAGCAAAAGTCA+AGG 0.652838 8.3:+61047796 MS.gene37561:CDS
ATGTGAATGAATATGTGTCT+CGG 0.664181 8.3:+61047779 MS.gene37561:CDS
ACTGAACCTCCACAAGCACA+AGG 0.665135 8.3:-61046618 None:intergenic
ATTACTGAGATCCTTCGGAT+CGG 0.667987 8.3:-61047863 None:intergenic
GTTCCATTGCAGTAGCACGT+AGG 0.677485 8.3:-61047753 None:intergenic
CATGTGCGAACCATTATGCA+TGG 0.704435 8.3:+61048152 MS.gene37561:CDS
TATCTGTGAGAAGAAGAATG+AGG 0.710608 8.3:+61046591 MS.gene37561:CDS
TCGCACATGTCAAAGCTCAG+CGG 0.744624 8.3:-61048138 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAAAATGATAAATAAAA+AGG - chr8.3:61048400-61048419 None:intergenic 10.0%
!! GTTTCAAAAATAAATAAAAA+TGG - chr8.3:61046506-61046525 None:intergenic 10.0%
!!! TTTGTTTAAAATTTCTAATT+AGG + chr8.3:61048441-61048460 MS.gene37561:intron 10.0%
!! AGAATATCTGTAAATAATAA+TGG - chr8.3:61048377-61048396 None:intergenic 15.0%
!! ATCAATATGATTATTCATTA+TGG + chr8.3:61046318-61046337 MS.gene37561:intron 15.0%
!!! AATAATCATATTGATTTCTA+TGG - chr8.3:61046313-61046332 None:intergenic 15.0%
!!! TTTTTAATATTTGCTTCTTA+AGG + chr8.3:61046458-61046477 MS.gene37561:intron 15.0%
!! AAACAATCAAATGTACTATT+AGG - chr8.3:61047710-61047729 None:intergenic 20.0%
!! GAAGCAAATATTAAAAATCA+CGG - chr8.3:61046455-61046474 None:intergenic 20.0%
!!! AATTTCAGTTATGTTTTAGA+AGG + chr8.3:61047617-61047636 MS.gene37561:intron 20.0%
!!! GATAAGTTTTTTTATGCAAA+AGG + chr8.3:61048219-61048238 MS.gene37561:CDS 20.0%
! AATATTCCAGATTATGAATG+TGG + chr8.3:61047351-61047370 MS.gene37561:CDS 25.0%
! TCTATCAATACTAGTTATGA+CGG + chr8.3:61046540-61046559 MS.gene37561:intron 25.0%
! TGATTTACATATGAAGTTCT+TGG + chr8.3:61047198-61047217 MS.gene37561:CDS 25.0%
!! ATAATCTGGAATATTGTCTT+CGG - chr8.3:61047346-61047365 None:intergenic 25.0%
!! GCATTTTTGATACAATTGTT+CGG - chr8.3:61046126-61046145 None:intergenic 25.0%
!! TAAAGTCTGAAACTCAAAAT+AGG + chr8.3:61047517-61047536 MS.gene37561:intron 25.0%
!! TGGAAATATCTGAAACTTTA+AGG - chr8.3:61046266-61046285 None:intergenic 25.0%
!!! ATCAAAACTTGTTTTTCTAG+AGG - chr8.3:61047829-61047848 None:intergenic 25.0%
!!! TCAAAACTTGTTTTTCTAGA+GGG - chr8.3:61047828-61047847 None:intergenic 25.0%
AAGGTAATTGACACTTATTC+TGG + chr8.3:61046164-61046183 MS.gene37561:intron 30.0%
ACAAAATTACTGAGATCCTT+CGG - chr8.3:61047871-61047890 None:intergenic 30.0%
ACAAACCTGTAAATAGTTTG+AGG - chr8.3:61047398-61047417 None:intergenic 30.0%
ATGGAAATCTATGATCTCAT+AGG + chr8.3:61046649-61046668 MS.gene37561:CDS 30.0%
ATGTGAATGAATATGTGTCT+CGG + chr8.3:61047779-61047798 MS.gene37561:CDS 30.0%
ATTCTTCTTCTCACAGATAA+TGG - chr8.3:61046590-61046609 None:intergenic 30.0%
CAGATACATCATCATTAACA+CGG - chr8.3:61048044-61048063 None:intergenic 30.0%
CTTCTTAAGGCTAAACTATT+GGG + chr8.3:61046471-61046490 MS.gene37561:intron 30.0%
TACTAGAACTTACTGAAAGA+CGG - chr8.3:61046700-61046719 None:intergenic 30.0%
TAGATAAACAGCTAGAAATG+TGG - chr8.3:61046286-61046305 None:intergenic 30.0%
TATGATCTCATAGGGAAAAT+GGG + chr8.3:61046658-61046677 MS.gene37561:CDS 30.0%
TCAAAAATGCTTCTTTCACT+TGG + chr8.3:61046136-61046155 MS.gene37561:CDS 30.0%
TGGAAATCTATGATCTCATA+GGG + chr8.3:61046650-61046669 MS.gene37561:CDS 30.0%
! GTAAGTTCTAGTACTAACTT+TGG + chr8.3:61046707-61046726 MS.gene37561:intron 30.0%
! TACAGGTTTGTTCTTTGTAA+TGG + chr8.3:61047407-61047426 MS.gene37561:intron 30.0%
! TTTTTAATAACCGACATGTG+TGG + chr8.3:61047468-61047487 MS.gene37561:intron 30.0%
!! ACAGATAATGGATAATGCAT+CGG - chr8.3:61046578-61046597 None:intergenic 30.0%
!! AGTACTGAGTTATCTTTTTC+AGG - chr8.3:61047148-61047167 None:intergenic 30.0%
!! CAATGACTGTTGTTTCATAT+CGG - chr8.3:61046940-61046959 None:intergenic 30.0%
!!! TCATAGTATGCTTTTTCATC+TGG - chr8.3:61048201-61048220 None:intergenic 30.0%
AAACCATTCTCCTGTATTCA+TGG - chr8.3:61047035-61047054 None:intergenic 35.0%
AAACTCAAAATAGGCACACT+TGG + chr8.3:61047526-61047545 MS.gene37561:intron 35.0%
AACTCAAAATAGGCACACTT+GGG + chr8.3:61047527-61047546 MS.gene37561:intron 35.0%
AAGTGCAAATGGTAAAGAAC+AGG + chr8.3:61047117-61047136 MS.gene37561:CDS 35.0%
ACTAGAACTTACTGAAAGAC+GGG - chr8.3:61046699-61046718 None:intergenic 35.0%
AGATCATAGATTTCCATGTC+TGG - chr8.3:61046646-61046665 None:intergenic 35.0%
ATTAATTTCTGCTGTGCTAG+TGG + chr8.3:61047273-61047292 MS.gene37561:intron 35.0%
CTATGATCTCATAGGGAAAA+TGG + chr8.3:61046657-61046676 MS.gene37561:CDS 35.0%
CTGATGAGGATTTGAATATG+TGG + chr8.3:61048256-61048275 MS.gene37561:CDS 35.0%
CTTCTTTCACTTGGATATGA+AGG + chr8.3:61046145-61046164 MS.gene37561:CDS 35.0%
GCTTCTTAAGGCTAAACTAT+TGG + chr8.3:61046470-61046489 MS.gene37561:intron 35.0%
GTTCTTTACCATTTGCACTT+CGG - chr8.3:61047117-61047136 None:intergenic 35.0%
TATCTGTGAGAAGAAGAATG+AGG + chr8.3:61046591-61046610 MS.gene37561:CDS 35.0%
TCCAGATTATGAATGTGGAA+GGG + chr8.3:61047356-61047375 MS.gene37561:CDS 35.0%
TGTAGATCAGAAATCTGAAC+TGG - chr8.3:61046890-61046909 None:intergenic 35.0%
TTCCAGATTATGAATGTGGA+AGG + chr8.3:61047355-61047374 MS.gene37561:CDS 35.0%
TTTCTGATCTACATGACCTT+TGG + chr8.3:61046897-61046916 MS.gene37561:CDS 35.0%
! CAAAATGCAATTGGTCTAGA+AGG + chr8.3:61047058-61047077 MS.gene37561:CDS 35.0%
! CTAATTAGGCCACTTTGATT+TGG + chr8.3:61048455-61048474 MS.gene37561:intron 35.0%
! CTTCTAGACCAATTGCATTT+TGG - chr8.3:61047060-61047079 None:intergenic 35.0%
! TTTTCTCCTGCATTCAAAGA+TGG - chr8.3:61047088-61047107 None:intergenic 35.0%
!! TCTGTTTCTGCATTATCATG+TGG + chr8.3:61047670-61047689 MS.gene37561:intron 35.0%
!! TGGCTTTCTAAAACACCATT+TGG - chr8.3:61046870-61046889 None:intergenic 35.0%
!!! TAGTATGCTTTTTCATCTGG+TGG - chr8.3:61048198-61048217 None:intergenic 35.0%
AACTCAGCTGTTTACTGATG+AGG + chr8.3:61048242-61048261 MS.gene37561:CDS 40.0%
AAGACTTTCCGAAGTGCAAA+TGG + chr8.3:61047106-61047125 MS.gene37561:CDS 40.0%
ACCCTTCCACATTCATAATC+TGG - chr8.3:61047360-61047379 None:intergenic 40.0%
ACTACTACACTCACATTTCG+TGG + chr8.3:61046237-61046256 MS.gene37561:intron 40.0%
ACTCAAAATAGGCACACTTG+GGG + chr8.3:61047528-61047547 MS.gene37561:intron 40.0%
AGATGTGATTATGGCAACCA+AGG + chr8.3:61046991-61047010 MS.gene37561:CDS 40.0%
ATAACTCAGTACTCCTGAAC+AGG + chr8.3:61047155-61047174 MS.gene37561:CDS 40.0%
ATGACACTCCTTCCATATCA+CGG + chr8.3:61046828-61046847 MS.gene37561:CDS 40.0%
ATGTGGTTATCAACGATTCG+AGG + chr8.3:61048273-61048292 MS.gene37561:CDS 40.0%
ATTACTGAGATCCTTCGGAT+CGG - chr8.3:61047866-61047885 None:intergenic 40.0%
ATTCATGGATGGTTGGCATT+TGG - chr8.3:61047020-61047039 None:intergenic 40.0%
CAAACTTTCGTAATCCCCAA+TGG - chr8.3:61047576-61047595 None:intergenic 40.0%
CACGCGCAATGATATATTAC+TGG - chr8.3:61048309-61048328 None:intergenic 40.0%
CACGGTTTATAAACCTACCA+AGG - chr8.3:61048026-61048045 None:intergenic 40.0%
CATCCATGAATACAGGAGAA+TGG + chr8.3:61047029-61047048 MS.gene37561:CDS 40.0%
CATCTGCTGTATTCAAAACC+TGG - chr8.3:61048077-61048096 None:intergenic 40.0%
CATTCTCCTGTATTCATGGA+TGG - chr8.3:61047031-61047050 None:intergenic 40.0%
GAGTGCCTCAAACTATTTAC+AGG + chr8.3:61047390-61047409 MS.gene37561:CDS 40.0%
GATGGAGAAGTTTCTAATGC+AGG + chr8.3:61048093-61048112 MS.gene37561:CDS 40.0%
GATGTGATTATGGCAACCAA+GGG + chr8.3:61046992-61047011 MS.gene37561:CDS 40.0%
GCATCTGTCAGATGTGATTA+TGG + chr8.3:61046982-61047001 MS.gene37561:CDS 40.0%
GTTGAAATAGCAGGAATCGA+CGG + chr8.3:61047226-61047245 MS.gene37561:CDS 40.0%
GTTTATAAACCTACCAAGGC+TGG - chr8.3:61048022-61048041 None:intergenic 40.0%
TGAACAGGAAAAGGAAAAGC+TGG + chr8.3:61047170-61047189 MS.gene37561:CDS 40.0%
TGGTTTCGCCAAAATGCAAT+TGG + chr8.3:61047049-61047068 MS.gene37561:CDS 40.0%
TGTATCTGAAAAGATCAGCC+AGG + chr8.3:61048056-61048075 MS.gene37561:CDS 40.0%
TTCATGGATGGTTGGCATTT+GGG - chr8.3:61047019-61047038 None:intergenic 40.0%
TTGGAAGCTGTTGAAATAGC+AGG + chr8.3:61047217-61047236 MS.gene37561:CDS 40.0%
TTTACATCAAGCAGTACGCT+TGG - chr8.3:61047501-61047520 None:intergenic 40.0%
! AGCTTTTCCTTTTCCTGTTC+AGG - chr8.3:61047171-61047190 None:intergenic 40.0%
! ATAGTTTGAGGCACTCTCTT+TGG - chr8.3:61047386-61047405 None:intergenic 40.0%
! CACAACCAACACTTTTACAC+CGG - chr8.3:61046086-61046105 None:intergenic 40.0%
! GAAGTGTCAAGAATATGCAC+AGG - chr8.3:61047895-61047914 None:intergenic 40.0%
! TGGACATTTTCCACACATGT+CGG - chr8.3:61047481-61047500 None:intergenic 40.0%
!! ATAGGAAGCACCATGCATAA+TGG - chr8.3:61048165-61048184 None:intergenic 40.0%
!!! CAGGTTTTGAATACAGCAGA+TGG + chr8.3:61048075-61048094 MS.gene37561:CDS 40.0%
!!! TTCTGCTACTTTTCTTCCCT+TGG + chr8.3:61047912-61047931 MS.gene37561:CDS 40.0%
AAAACCAAGAGCCCGTGATA+TGG - chr8.3:61046843-61046862 None:intergenic 45.0%
ACTTTCGTAATCCCCAATGG+TGG - chr8.3:61047573-61047592 None:intergenic 45.0%
CAGTACTCCTGAACAGGAAA+AGG + chr8.3:61047161-61047180 MS.gene37561:CDS 45.0%
CATGTGCGAACCATTATGCA+TGG + chr8.3:61048152-61048171 MS.gene37561:CDS 45.0%
CATTGCCTGCCAAATCAAAG+TGG - chr8.3:61048467-61048486 None:intergenic 45.0%
CTCCTGCATTCAAAGATGGT+TGG - chr8.3:61047084-61047103 None:intergenic 45.0%
CTCCTGTATTCATGGATGGT+TGG - chr8.3:61047027-61047046 None:intergenic 45.0%
CTTTCGTAATCCCCAATGGT+GGG - chr8.3:61047572-61047591 None:intergenic 45.0%
GGACAACTTGAGCTTTCCAA+GGG - chr8.3:61047931-61047950 None:intergenic 45.0%
GTTGGTTGTGGATGCTAGTT+CGG + chr8.3:61046096-61046115 MS.gene37561:CDS 45.0%
TGACACTCCTTCCATATCAC+GGG + chr8.3:61046829-61046848 MS.gene37561:CDS 45.0%
TGAGGTTAACCTTGTGCTTG+TGG + chr8.3:61046609-61046628 MS.gene37561:CDS 45.0%
TGCCAACCATCCATGAATAC+AGG + chr8.3:61047022-61047041 MS.gene37561:CDS 45.0%
TTGTCGTTCTTGTGTGAAGC+TGG + chr8.3:61047319-61047338 MS.gene37561:intron 45.0%
! AGTAGCCGGTGTAAAAGTGT+TGG + chr8.3:61046078-61046097 MS.gene37561:CDS 45.0%
! ATATCACGGGCTCTTGGTTT+TGG + chr8.3:61046842-61046861 MS.gene37561:CDS 45.0%
! CTTGGAAAGCTCAAGTTGTC+CGG + chr8.3:61047930-61047949 MS.gene37561:CDS 45.0%
! TTTTGCCTGAAAGGTGACTC+CGG - chr8.3:61047952-61047971 None:intergenic 45.0%
!! AACACTTTTACACCGGCTAC+TGG - chr8.3:61046079-61046098 None:intergenic 45.0%
!! ACTTTGCTGTTCCAATGGCA+GGG - chr8.3:61047983-61048002 None:intergenic 45.0%
!! CGGTGTAAAAGTGTTGGTTG+TGG + chr8.3:61046084-61046103 MS.gene37561:CDS 45.0%
!! GACAGCTGATTTTGCCTGAA+AGG - chr8.3:61047961-61047980 None:intergenic 45.0%
!! TCTCGGACTAGCAAAAGTCA+AGG + chr8.3:61047796-61047815 MS.gene37561:CDS 45.0%
!! TTAGGCCACTTTGATTTGGC+AGG + chr8.3:61048459-61048478 MS.gene37561:intron 45.0%
!!! CTCTTGGTTTTGGAGCCAAA+TGG + chr8.3:61046852-61046871 MS.gene37561:CDS 45.0%
!!! GCTTTTTCATCTGGTGGTAG+TGG - chr8.3:61048192-61048211 None:intergenic 45.0%
!!! TTTTCATCTGGTGGTAGTGG+CGG - chr8.3:61048189-61048208 None:intergenic 45.0%
!!! ATTTTTTATATTTATATTTC+TGG + chr8.3:61046199-61046218 MS.gene37561:intron 5.0%
AAACCTACCAAGGCTGGATG+TGG - chr8.3:61048016-61048035 None:intergenic 50.0%
AAATCAGCTGTCCCTGCCAT+TGG + chr8.3:61047969-61047988 MS.gene37561:CDS 50.0%
AAGCAGTACCTGACTTCGTG+TGG + chr8.3:61046960-61046979 MS.gene37561:CDS 50.0%
ACTGAACCTCCACAAGCACA+AGG - chr8.3:61046621-61046640 None:intergenic 50.0%
ATCTCAGCGACAAGCATGTG+AGG - chr8.3:61046751-61046770 None:intergenic 50.0%
CGGACAACTTGAGCTTTCCA+AGG - chr8.3:61047932-61047951 None:intergenic 50.0%
GGCCAACCATCTTTGAATGC+AGG + chr8.3:61047079-61047098 MS.gene37561:CDS 50.0%
GGTTAACCTTGTGCTTGTGG+AGG + chr8.3:61046612-61046631 MS.gene37561:CDS 50.0%
GTTCCATTGCAGTAGCACGT+AGG - chr8.3:61047756-61047775 None:intergenic 50.0%
TATATCATTGCGCGTGCGCT+CGG + chr8.3:61048313-61048332 MS.gene37561:intron 50.0%
TCGCACATGTCAAAGCTCAG+CGG - chr8.3:61048141-61048160 None:intergenic 50.0%
! GAACCTACGTGCTACTGCAA+TGG + chr8.3:61047750-61047769 MS.gene37561:CDS 50.0%
!! GACTTTGCTGTTCCAATGGC+AGG - chr8.3:61047984-61048003 None:intergenic 50.0%
!! GCAGGACTTTGCTGTTCCAA+TGG - chr8.3:61047988-61048007 None:intergenic 50.0%
ACACCACATCCAGCCTTGGT+AGG + chr8.3:61048010-61048029 MS.gene37561:CDS 55.0%
ACCTTTGGCGATTCGCAGTG+TGG + chr8.3:61046912-61046931 MS.gene37561:CDS 55.0%
AGATCCTTCGGATCGGCATC+TGG - chr8.3:61047859-61047878 None:intergenic 55.0%
AGGTACCATGGTCCAGTAGC+CGG + chr8.3:61046064-61046083 MS.gene37561:CDS 55.0%
ATAGGCACACTTGGGGCAAC+TGG + chr8.3:61047535-61047554 MS.gene37561:intron 55.0%
ATATCATTGCGCGTGCGCTC+GGG + chr8.3:61048314-61048333 MS.gene37561:intron 55.0%
CCAAGAGCCCGTGATATGGA+AGG - chr8.3:61046839-61046858 None:intergenic 55.0%
CCTTCCATATCACGGGCTCT+TGG + chr8.3:61046836-61046855 MS.gene37561:CDS 55.0%
GACAGATGCCACACGAAGTC+AGG - chr8.3:61046971-61046990 None:intergenic 55.0%
GGAGGTTCAGTTGCCAGACA+TGG + chr8.3:61046630-61046649 MS.gene37561:CDS 55.0%
GTCTGACGAGTTCCAGTCAG+CGG + chr8.3:61046030-61046049 MS.gene37561:CDS 55.0%
GTTGTCCGGAGTCACCTTTC+AGG + chr8.3:61047944-61047963 MS.gene37561:CDS 55.0%
TCCACACTGCGAATCGCCAA+AGG - chr8.3:61046916-61046935 None:intergenic 55.0%
TGATCCAGATGCCGATCCGA+AGG + chr8.3:61047852-61047871 MS.gene37561:CDS 55.0%
TGTAGACTCACTCGTGCTCG+CGG - chr8.3:61048340-61048359 None:intergenic 55.0%
! TGGTTGGCATTTGGGACCCT+TGG - chr8.3:61047011-61047030 None:intergenic 55.0%
! TTACACCGGCTACTGGACCA+TGG - chr8.3:61046072-61046091 None:intergenic 55.0%
TGCTCGAGGCTCCCACCATT+GGG + chr8.3:61047558-61047577 MS.gene37561:intron 60.0%
!! GCGAAGCTGAGGAGGTACCA+TGG + chr8.3:61046052-61046071 MS.gene37561:CDS 60.0%
!! TCTGGTGGTAGTGGCGGCAT+AGG - chr8.3:61048183-61048202 None:intergenic 60.0%
AGGCTGGATGTGGTGTGCGC+AGG - chr8.3:61048006-61048025 None:intergenic 65.0%
AGTCAGCGGCGAAGCTGAGG+AGG + chr8.3:61046044-61046063 MS.gene37561:CDS 65.0%
CTTGGGGCAACTGGTGCTCG+AGG + chr8.3:61047544-61047563 MS.gene37561:intron 65.0%
GCGCACACCACATCCAGCCT+TGG + chr8.3:61048006-61048025 MS.gene37561:CDS 65.0%
GCTCGAGGCTCCCACCATTG+GGG + chr8.3:61047559-61047578 MS.gene37561:intron 65.0%
GTGCTCGAGGCTCCCACCAT+TGG + chr8.3:61047557-61047576 MS.gene37561:intron 65.0%
TCCAGTCAGCGGCGAAGCTG+AGG + chr8.3:61046041-61046060 MS.gene37561:CDS 65.0%
TCCTCAGCTTCGCCGCTGAC+TGG - chr8.3:61046045-61046064 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 61046025 61048503 61046025 ID=MS.gene37561
chr8.3 mRNA 61046025 61048503 61046025 ID=MS.gene37561.t1;Parent=MS.gene37561
chr8.3 exon 61046025 61046166 61046025 ID=MS.gene37561.t1.exon1;Parent=MS.gene37561.t1
chr8.3 CDS 61046025 61046166 61046025 ID=cds.MS.gene37561.t1;Parent=MS.gene37561.t1
chr8.3 exon 61046554 61046706 61046554 ID=MS.gene37561.t1.exon2;Parent=MS.gene37561.t1
chr8.3 CDS 61046554 61046706 61046554 ID=cds.MS.gene37561.t1;Parent=MS.gene37561.t1
chr8.3 exon 61046810 61047247 61046810 ID=MS.gene37561.t1.exon3;Parent=MS.gene37561.t1
chr8.3 CDS 61046810 61047247 61046810 ID=cds.MS.gene37561.t1;Parent=MS.gene37561.t1
chr8.3 exon 61047338 61047411 61047338 ID=MS.gene37561.t1.exon4;Parent=MS.gene37561.t1
chr8.3 CDS 61047338 61047411 61047338 ID=cds.MS.gene37561.t1;Parent=MS.gene37561.t1
chr8.3 exon 61047733 61048294 61047733 ID=MS.gene37561.t1.exon5;Parent=MS.gene37561.t1
chr8.3 CDS 61047733 61048294 61047733 ID=cds.MS.gene37561.t1;Parent=MS.gene37561.t1
chr8.3 exon 61048463 61048503 61048463 ID=MS.gene37561.t1.exon6;Parent=MS.gene37561.t1
chr8.3 CDS 61048463 61048503 61048463 ID=cds.MS.gene37561.t1;Parent=MS.gene37561.t1
Gene Sequence

>MS.gene37561

ATGGAGTCTGACGAGTTCCAGTCAGCGGCGAAGCTGAGGAGGTACCATGGTCCAGTAGCCGGTGTAAAAGTGTTGGTTGTGGATGCTAGTTCGGCATGCCGAACAATTGTATCAAAAATGCTTCTTTCACTTGGATATGAAGGTAATTGACACTTATTCTGGAAGTTAAAAGTTATTTTTTATATTTATATTTCTGGCTAAAATGCTGCTGAACTACTACACTCACATTTCGTGGCAACCTTAAAGTTTCAGATATTTCCACATTTCTAGCTGTTTATCTACTAACCATAGAAATCAATATGATTATTCATTATGGATTAGTTTTTGATAAATTTATCATATTCATTGACTCTGTTCTTTTTTAATGTATGCATGTGTCTTCTTCGCTTGAGATCATCATATAATCTGATAACTTATTCTAATGTAGCCGTGATTTTTAATATTTGCTTCTTAAGGCTAAACTATTGGGATATTGTCTCCATTTTTATTTATTTTTGAAACAATTTTCTTGACATTCTATCAATACTAGTTATGACGGCTTCACTAGCTTCCGATGCATTATCCATTATCTGTGAGAAGAAGAATGAGGTTAACCTTGTGCTTGTGGAGGTTCAGTTGCCAGACATGGAAATCTATGATCTCATAGGGAAAATGGGAGAAAGCTCTAATCTCCCGTCTTTCAGTAAGTTCTAGTACTAACTTTGGCTTACTATTTACTTGAAGCCTCACATGCTTGTCGCTGAGATCAATCGTTATCTGACAGTAACTATTTGTTGCGTCTGTAGTTATGACTGCTTATGATGATGACACTCCTTCCATATCACGGGCTCTTGGTTTTGGAGCCAAATGGTGTTTTAGAAAGCCAGTTCAGATTTCTGATCTACATGACCTTTGGCGATTCGCAGTGTGGAACCGATATGAAACAACAGTCATTGAAGCAGTACCTGACTTCGTGTGGCATCTGTCAGATGTGATTATGGCAACCAAGGGTCCCAAATGCCAACCATCCATGAATACAGGAGAATGGTTTCGCCAAAATGCAATTGGTCTAGAAGGCCAACCATCTTTGAATGCAGGAGAAAAGACTTTCCGAAGTGCAAATGGTAAAGAACAGGAATTTCCTGAAAAAGATAACTCAGTACTCCTGAACAGGAAAAGGAAAAGCTGGACTGATGATTTACATATGAAGTTCTTGGAAGCTGTTGAAATAGCAGGAATCGACGGTGAGTTTGAACTTGTGTATTATTTATTAATTTCTGCTGTGCTAGTGGCTATAAGTAAAAAATAACGTTTGTTGTCGTTCTTGTGTGAAGCTGGTCCGAAGACAATATTCCAGATTATGAATGTGGAAGGGTTTACCAAAGAGAGTGCCTCAAACTATTTACAGGTTTGTTCTTTGTAATGGCGCACGTGTACTGTCTTGTACAACTCTTTTTTGTACACTTTTTAATAACCGACATGTGTGGAAAATGTCCAAGCGTACTGCTTGATGTAAAGTCTGAAACTCAAAATAGGCACACTTGGGGCAACTGGTGCTCGAGGCTCCCACCATTGGGGATTACGAAAGTTTGAATTTTGTTTTCAATTTTGTTAATTTCAGTTATGTTTTAGAAGGAAGCAGCAGAATTAGTCTTCAGCTGCATATTCTGTTTCTGCATTATCATGTGGCATTCTAATCACGACCTAATAGTACATTTGATTGTTTCAGAGATATCGTCAATCTATGAACCTACGTGCTACTGCAATGGAACAGCATGTGAATGAATATGTGTCTCGGACTAGCAAAAGTCAAGGAAAACGCCCTCTAGAAAAACAAGTTTTGATCAATGATCCAGATGCCGATCCGAAGGATCTCAGTAATTTTGTGCCTGTGCATATTCTTGACACTTCTGCTACTTTTCTTCCCTTGGAAAGCTCAAGTTGTCCGGAGTCACCTTTCAGGCAAAATCAGCTGTCCCTGCCATTGGAACAGCAAAGTCCTGCGCACACCACATCCAGCCTTGGTAGGTTTATAAACCGTGTTAATGATGATGTATCTGAAAAGATCAGCCAGGTTTTGAATACAGCAGATGGAGAAGTTTCTAATGCAGGACAACAGTTGAATTTTTCAACACCGCTGAGCTTTGACATGTGCGAACCATTATGCATGGTGCTTCCTATGCCGCCACTACCACCAGATGAAAAAGCATACTATGATAAGTTTTTTTATGCAAAAGGAACTCAGCTGTTTACTGATGAGGATTTGAATATGTGGTTATCAACGATTCGAGGTATGAGCATGCCAGTAATATATCATTGCGCGTGCGCTCGGGCCGCGAGCACGAGTGAGTCTACATTTTCTTCTTGTTTCCATTATTATTTACAGATATTCTCCTTTTTATTTATCATTTTTGTTATTTTCTTTTTTTACTTTTTTTTTGTTTAAAATTTCTAATTAGGCCACTTTGATTTGGCAGGCAATGTGAATGCTTTTGCTTGA

Protein sequence

>MS.gene37561.t1

MESDEFQSAAKLRRYHGPVAGVKVLVVDASSACRTIVSKMLLSLGYEVMTASLASDALSIICEKKNEVNLVLVEVQLPDMEIYDLIGKMGESSNLPSFIMTAYDDDTPSISRALGFGAKWCFRKPVQISDLHDLWRFAVWNRYETTVIEAVPDFVWHLSDVIMATKGPKCQPSMNTGEWFRQNAIGLEGQPSLNAGEKTFRSANGKEQEFPEKDNSVLLNRKRKSWTDDLHMKFLEAVEIAGIDAGPKTIFQIMNVEGFTKESASNYLQRYRQSMNLRATAMEQHVNEYVSRTSKSQGKRPLEKQVLINDPDADPKDLSNFVPVHILDTSATFLPLESSSCPESPFRQNQLSLPLEQQSPAHTTSSLGRFINRVNDDVSEKISQVLNTADGEVSNAGQQLNFSTPLSFDMCEPLCMVLPMPPLPPDEKAYYDKFFYAKGTQLFTDEDLNMWLSTIRGHFDLAGNVNAFA