Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37582.t1 | AFK49674.1 | 85.4 | 302 | 40 | 1 | 1 | 298 | 1 | 302 | 8.40E-84 | 320.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37582.t1 | Q14919 | 57.1 | 91 | 39 | 0 | 2 | 92 | 5 | 95 | 5.4e-23 | 109.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37582.t1 | I3TAY2 | 85.4 | 302 | 40 | 1 | 1 | 298 | 1 | 302 | 6.1e-84 | 320.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene37582.t1 | TF | NF-YC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37582.t1 | MTR_5g088760 | 91.753 | 291 | 18 | 3 | 1 | 286 | 1 | 290 | 6.45e-165 | 460 |
| MS.gene37582.t1 | MTR_5g088760 | 91.429 | 280 | 18 | 3 | 12 | 286 | 3 | 281 | 5.33e-156 | 437 |
| MS.gene37582.t1 | MTR_5g088760 | 91.241 | 274 | 18 | 3 | 18 | 286 | 1 | 273 | 1.12e-151 | 426 |
| MS.gene37582.t1 | MTR_3g012030 | 49.329 | 298 | 122 | 9 | 1 | 287 | 1 | 280 | 2.65e-78 | 240 |
| MS.gene37582.t1 | MTR_8g041420 | 44.337 | 309 | 135 | 6 | 1 | 287 | 1 | 294 | 1.27e-74 | 231 |
| MS.gene37582.t1 | MTR_3g012030 | 46.619 | 281 | 121 | 9 | 18 | 287 | 1 | 263 | 1.50e-65 | 207 |
| MS.gene37582.t1 | MTR_3g012030 | 37.975 | 237 | 118 | 9 | 62 | 287 | 1 | 219 | 1.15e-32 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37582.t1 | AT5G19490 | 44.000 | 300 | 124 | 8 | 1 | 297 | 1 | 259 | 4.47e-59 | 190 |
| MS.gene37582.t1 | AT3G12480 | 69.925 | 133 | 34 | 1 | 1 | 127 | 1 | 133 | 6.54e-59 | 190 |
Find 63 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTAACTTCCTCGATTTC+TGG | 0.151578 | 5.3:-71631691 | None:intergenic |
| AACTAGCCAACTTAAGTAAA+AGG | 0.241392 | 5.3:+71631983 | MS.gene37582:CDS |
| GTGAGCAAAGTTCCTGATTT+AGG | 0.300821 | 5.3:+71630812 | MS.gene37582:CDS |
| GGAAGGGGCGGTAGGGGTAG+AGG | 0.322327 | 5.3:+71631544 | MS.gene37582:CDS |
| ATGCAAGCTGATGAAGATAT+AGG | 0.348420 | 5.3:+71629549 | MS.gene37582:CDS |
| GCTTAACTTCCTCGATTTCT+GGG | 0.371274 | 5.3:-71631690 | None:intergenic |
| ACTTAAGTTGGCTAGTTGTA+AGG | 0.372538 | 5.3:-71631977 | None:intergenic |
| GGAGACCAAGAGAAGTAAAA+TGG | 0.382690 | 5.3:+71630997 | MS.gene37582:CDS |
| AGGGGTAGAGGCAGGGGACG+TGG | 0.387631 | 5.3:+71631556 | MS.gene37582:CDS |
| TAAAAGGATTGATGAAGATA+TGG | 0.395167 | 5.3:+71631999 | MS.gene37582:CDS |
| TTTCGATTTAAATCTGAATC+CGG | 0.397431 | 5.3:+71631792 | MS.gene37582:CDS |
| GGGGCGGTAGGGGTAGAGGC+AGG | 0.398203 | 5.3:+71631548 | MS.gene37582:CDS |
| GGCGGTAGGGGTAGAGGCAG+GGG | 0.408013 | 5.3:+71631550 | MS.gene37582:CDS |
| TGCAAGCTGATGAAGATATA+GGG | 0.408049 | 5.3:+71629550 | MS.gene37582:CDS |
| AGGGGACGTGGCCGCGGCCA+AGG | 0.424123 | 5.3:+71631568 | MS.gene37582:CDS |
| AGAGGCAGGGGACGTGGCCG+CGG | 0.424913 | 5.3:+71631562 | MS.gene37582:CDS |
| GCAGCAGAACCGCCTAAATC+AGG | 0.433277 | 5.3:-71630824 | None:intergenic |
| GAACAATGCTTAACTTCCTC+AGG | 0.444484 | 5.3:-71631733 | None:intergenic |
| TCCATGTCGTCATCCGGATC+CGG | 0.447116 | 5.3:-71631811 | None:intergenic |
| ACTTCCTCAGGTTCTTTGAC+TGG | 0.454445 | 5.3:-71631721 | None:intergenic |
| TTTCGAACTACCACTTCAGC+TGG | 0.460443 | 5.3:-71631769 | None:intergenic |
| TTAGGCGGTTCTGCTGCAAC+TGG | 0.479475 | 5.3:+71630830 | MS.gene37582:CDS |
| CTTAAGTTGGCTAGTTGTAA+GGG | 0.481167 | 5.3:-71631976 | None:intergenic |
| ATTTCATCCATGTCGTCATC+CGG | 0.486479 | 5.3:-71631817 | None:intergenic |
| ACCAGTGGAAGGGGCGGTAG+GGG | 0.488619 | 5.3:+71631538 | MS.gene37582:CDS |
| TTACAAATGAAAAGCATTCA+CGG | 0.491312 | 5.3:-71629805 | None:intergenic |
| ATACCAGTGGAAGGGGCGGT+AGG | 0.493238 | 5.3:+71631536 | MS.gene37582:CDS |
| TACCAGTGGAAGGGGCGGTA+GGG | 0.494206 | 5.3:+71631537 | MS.gene37582:CDS |
| GAAGATGAACCGGATGGGAT+AGG | 0.503037 | 5.3:-71631853 | None:intergenic |
| ACCCCTACCGCCCCTTCCAC+TGG | 0.506809 | 5.3:-71631539 | None:intergenic |
| TTTAAATCTGAATCCGGATC+CGG | 0.510680 | 5.3:+71631798 | MS.gene37582:CDS |
| GGGCGGTAGGGGTAGAGGCA+GGG | 0.517634 | 5.3:+71631549 | MS.gene37582:CDS |
| CATGCGCATACCAGTGGAAG+GGG | 0.522977 | 5.3:+71631529 | MS.gene37582:CDS |
| TCCGGATCCGGATGACGACA+TGG | 0.537250 | 5.3:+71631810 | MS.gene37582:CDS |
| GACTACTTACAAACTAGAAG+AGG | 0.544073 | 5.3:-71629591 | None:intergenic |
| TGTGAAGCATTGAAGCAAAA+CGG | 0.548283 | 5.3:+71631643 | MS.gene37582:CDS |
| ACCTCCTCTTAGTGACAGCT+TGG | 0.548550 | 5.3:-71630859 | None:intergenic |
| AATTTCAGAAGAGAAGATTG+AGG | 0.553548 | 5.3:+71631906 | MS.gene37582:CDS |
| CATACGAGATAACACTTAGG+AGG | 0.553719 | 5.3:+71629772 | MS.gene37582:CDS |
| GAACCGGATGGGATAGGAGT+TGG | 0.555156 | 5.3:-71631847 | None:intergenic |
| GAGAAGATTGAGGAATACCC+TGG | 0.559641 | 5.3:+71631916 | MS.gene37582:CDS |
| ATATCAGAAAAGGACCATCC+AGG | 0.563775 | 5.3:-71631934 | None:intergenic |
| GGAAGTTAAGCATTGTTCAC+CGG | 0.563902 | 5.3:+71631738 | MS.gene37582:CDS |
| ACACCAACTCCTATCCCATC+CGG | 0.568917 | 5.3:+71631844 | MS.gene37582:CDS |
| AACATGCGCATACCAGTGGA+AGG | 0.579451 | 5.3:+71631527 | MS.gene37582:CDS |
| ACGACCAAGCTGTCACTAAG+AGG | 0.580960 | 5.3:+71630855 | MS.gene37582:CDS |
| GGTAAGAAAACCAGCTGAAG+TGG | 0.584865 | 5.3:+71631759 | MS.gene37582:CDS |
| TATCAGAAAAGGACCATCCA+GGG | 0.585690 | 5.3:-71631933 | None:intergenic |
| ATACGAGATAACACTTAGGA+GGG | 0.600468 | 5.3:+71629773 | MS.gene37582:CDS |
| AGATATAGGGAAGATTGCAT+TGG | 0.616410 | 5.3:+71629563 | MS.gene37582:CDS |
| TAATGTAAGCCCAGAAATCG+AGG | 0.616586 | 5.3:+71631681 | MS.gene37582:CDS |
| AGCAAAGTTCCTGATTTAGG+CGG | 0.623500 | 5.3:+71630815 | MS.gene37582:CDS |
| CGAGAACATGCGCATACCAG+TGG | 0.633781 | 5.3:+71631523 | MS.gene37582:CDS |
| GGATGGGATAGGAGTTGGTG+TGG | 0.637023 | 5.3:-71631842 | None:intergenic |
| GCGCATACCAGTGGAAGGGG+CGG | 0.637896 | 5.3:+71631532 | MS.gene37582:CDS |
| GAACATACGAGATAACACTT+AGG | 0.637954 | 5.3:+71629769 | MS.gene37582:CDS |
| ACATGCGCATACCAGTGGAA+GGG | 0.649450 | 5.3:+71631528 | MS.gene37582:CDS |
| AGATTGAGGAATACCCTGGA+TGG | 0.653139 | 5.3:+71631920 | MS.gene37582:CDS |
| TTCACCAGTCAAAGAACCTG+AGG | 0.656260 | 5.3:+71631717 | MS.gene37582:CDS |
| CTTACAAACTAGAAGAGGCA+CGG | 0.671946 | 5.3:-71629586 | None:intergenic |
| TACGAGATAACACTTAGGAG+GGG | 0.675136 | 5.3:+71629774 | MS.gene37582:CDS |
| ACCAAGCTGTCACTAAGAGG+AGG | 0.677608 | 5.3:+71630858 | MS.gene37582:CDS |
| TGACGATGATGACAGCGATG+AGG | 0.685240 | 5.3:+71630976 | MS.gene37582:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAATCAGT+TGG | - | chr5.3:71631431-71631450 | None:intergenic | 10.0% |
| !! | AAATTTAACAAAATTAAACA+AGG | + | chr5.3:71630067-71630086 | MS.gene37582:intron | 10.0% |
| !! | ATTGATATATTTATTTATGT+TGG | - | chr5.3:71630498-71630517 | None:intergenic | 10.0% |
| !! | TAGTAAAAAAAAATGTTAAA+AGG | - | chr5.3:71629234-71629253 | None:intergenic | 10.0% |
| !! | TATCTTTAAATTTAATATGT+TGG | - | chr5.3:71629940-71629959 | None:intergenic | 10.0% |
| !! | TTTCACAAAAAAAAAAAAAT+CGG | + | chr5.3:71630043-71630062 | MS.gene37582:intron | 10.0% |
| !!! | TAAATTTTTTTCTTTATAGT+TGG | - | chr5.3:71629914-71629933 | None:intergenic | 10.0% |
| !! | AAGAAAAAATATTCTTCAAT+CGG | - | chr5.3:71630631-71630650 | None:intergenic | 15.0% |
| !! | ATAGTCATAAACAAATTAAA+TGG | - | chr5.3:71630410-71630429 | None:intergenic | 15.0% |
| !! | GTTTCAAAAAACAAAAAATA+GGG | - | chr5.3:71629628-71629647 | None:intergenic | 15.0% |
| !! | TAAACCTAATGATAATAATA+AGG | - | chr5.3:71628323-71628342 | None:intergenic | 15.0% |
| !! | TCCTTTATTAAAATTTGATA+TGG | + | chr5.3:71628777-71628796 | MS.gene37582:intron | 15.0% |
| !! | TGTTTCAAAAAACAAAAAAT+AGG | - | chr5.3:71629629-71629648 | None:intergenic | 15.0% |
| !!! | AAAATTGATTTAAGTGATTA+TGG | + | chr5.3:71631343-71631362 | MS.gene37582:intron | 15.0% |
| !!! | AATCACTTAAATCAATTTTT+TGG | - | chr5.3:71631342-71631361 | None:intergenic | 15.0% |
| !!! | ACCATATCAAATTTTAATAA+AGG | - | chr5.3:71628781-71628800 | None:intergenic | 15.0% |
| !!! | ATTTTTCAATGTAAACTAAT+AGG | + | chr5.3:71630359-71630378 | MS.gene37582:intron | 15.0% |
| !!! | TATATTGTAATTTGTAAACA+GGG | + | chr5.3:71629062-71629081 | MS.gene37582:intron | 15.0% |
| !!! | TGAAGAATATTTTTTCTTTT+GGG | + | chr5.3:71630633-71630652 | MS.gene37582:intron | 15.0% |
| !!! | TGATTTGTATTTTGTATATT+AGG | + | chr5.3:71630939-71630958 | MS.gene37582:intron | 15.0% |
| !!! | TTACAGATTAAATTTCTTTT+CGG | - | chr5.3:71630168-71630187 | None:intergenic | 15.0% |
| !!! | TTGAAGAATATTTTTTCTTT+TGG | + | chr5.3:71630632-71630651 | MS.gene37582:intron | 15.0% |
| !!! | TTTTCTGTTTTTGTTTTATT+GGG | + | chr5.3:71628286-71628305 | MS.gene37582:intron | 15.0% |
| !!! | TTTTTCTGTTTTTGTTTTAT+TGG | + | chr5.3:71628285-71628304 | MS.gene37582:intron | 15.0% |
| !! | AAATCTTCTTTACCATAAAT+GGG | + | chr5.3:71628886-71628905 | MS.gene37582:intron | 20.0% |
| !! | ATATAGAACAAATATAACCA+GGG | - | chr5.3:71630696-71630715 | None:intergenic | 20.0% |
| !! | ATTTAGTAAACACTCAATTA+TGG | - | chr5.3:71630326-71630345 | None:intergenic | 20.0% |
| !! | GAATCCTTATTATTATCATT+AGG | + | chr5.3:71628316-71628335 | MS.gene37582:intron | 20.0% |
| !! | TAGCTCAATGTTTATTATTT+GGG | + | chr5.3:71630580-71630599 | MS.gene37582:intron | 20.0% |
| !! | TTGTACAAAATGTTGTTAAA+TGG | - | chr5.3:71631196-71631215 | None:intergenic | 20.0% |
| !!! | ATCATTAGGTTTATTTTTGT+TGG | + | chr5.3:71628330-71628349 | MS.gene37582:intron | 20.0% |
| !!! | ATTTTGATTATATGGATGAT+GGG | + | chr5.3:71628361-71628380 | MS.gene37582:intron | 20.0% |
| !!! | CTATATTGTAATTTGTAAAC+AGG | + | chr5.3:71629061-71629080 | MS.gene37582:intron | 20.0% |
| !!! | GAAGAATATTTTTTCTTTTG+GGG | + | chr5.3:71630634-71630653 | MS.gene37582:intron | 20.0% |
| !!! | TATTTTGATTATATGGATGA+TGG | + | chr5.3:71628360-71628379 | MS.gene37582:intron | 20.0% |
| !!! | TCATTAGGTTTATTTTTGTT+GGG | + | chr5.3:71628331-71628350 | MS.gene37582:intron | 20.0% |
| ! | AAAAATATTCTTCAATCGGT+CGG | - | chr5.3:71630627-71630646 | None:intergenic | 25.0% |
| ! | AAATGTTAAAAGGACAAAAC+TGG | - | chr5.3:71629224-71629243 | None:intergenic | 25.0% |
| ! | AATGAGTGAGAATTCAATAA+TGG | - | chr5.3:71629401-71629420 | None:intergenic | 25.0% |
| ! | AATTGCATAAAATGTCTGTA+AGG | - | chr5.3:71630004-71630023 | None:intergenic | 25.0% |
| ! | AGATAAAATAACTCTGTTGT+GGG | + | chr5.3:71628456-71628475 | MS.gene37582:intron | 25.0% |
| ! | AGCTCAATGTTTATTATTTG+GGG | + | chr5.3:71630581-71630600 | MS.gene37582:intron | 25.0% |
| ! | ATAAAAATACTGTCAGATAG+CGG | - | chr5.3:71631308-71631327 | None:intergenic | 25.0% |
| ! | ATCAGCAAAACAATAACATT+AGG | - | chr5.3:71628677-71628696 | None:intergenic | 25.0% |
| ! | ATGATCAATGATATCAATAG+TGG | + | chr5.3:71629118-71629137 | MS.gene37582:intron | 25.0% |
| ! | CAAAAAACAAATATGCAAAG+TGG | - | chr5.3:71631084-71631103 | None:intergenic | 25.0% |
| ! | CACTCAATTATGGATAAAAT+TGG | - | chr5.3:71630316-71630335 | None:intergenic | 25.0% |
| ! | CGGATTGAAAAAGAAAATAA+CGG | + | chr5.3:71631121-71631140 | MS.gene37582:intron | 25.0% |
| ! | GAAATCTTCTTTACCATAAA+TGG | + | chr5.3:71628885-71628904 | MS.gene37582:intron | 25.0% |
| ! | GATATAGAACAAATATAACC+AGG | - | chr5.3:71630697-71630716 | None:intergenic | 25.0% |
| ! | GTAAATTAAAGCAACAACAA+AGG | + | chr5.3:71630237-71630256 | MS.gene37582:intron | 25.0% |
| ! | GTAGCTCAATGTTTATTATT+TGG | + | chr5.3:71630579-71630598 | MS.gene37582:intron | 25.0% |
| ! | TAAAAGGATTGATGAAGATA+TGG | + | chr5.3:71631999-71632018 | MS.gene37582:CDS | 25.0% |
| ! | TATAGAACAAATATAACCAG+GGG | - | chr5.3:71630695-71630714 | None:intergenic | 25.0% |
| ! | TCAGCAAAACAATAACATTA+GGG | - | chr5.3:71628676-71628695 | None:intergenic | 25.0% |
| ! | TCTATATAATTGTTAGAGAC+TGG | + | chr5.3:71630462-71630481 | MS.gene37582:intron | 25.0% |
| ! | TTGCATAATTGATTATTGAC+AGG | + | chr5.3:71629509-71629528 | MS.gene37582:intron | 25.0% |
| ! | TTTCGATTTAAATCTGAATC+CGG | + | chr5.3:71631792-71631811 | MS.gene37582:CDS | 25.0% |
| !! | AATTACCATTTTACTTCTCT+TGG | - | chr5.3:71631005-71631024 | None:intergenic | 25.0% |
| !! | ATCAATCCTTTTACTTAAGT+TGG | - | chr5.3:71631992-71632011 | None:intergenic | 25.0% |
| !! | CTTTTCTGATATGGAAAAAA+TGG | + | chr5.3:71631945-71631964 | MS.gene37582:CDS | 25.0% |
| !! | TAGTTTATCTGTATTGCTTT+TGG | + | chr5.3:71629841-71629860 | MS.gene37582:intron | 25.0% |
| !! | TATTTCACATAGCGTATTTT+TGG | - | chr5.3:71629165-71629184 | None:intergenic | 25.0% |
| !! | TTGTACAAAATCATGTTTTG+CGG | + | chr5.3:71631208-71631227 | MS.gene37582:intron | 25.0% |
| !! | TTGTGATTTTTGTCTTGTAT+TGG | - | chr5.3:71630196-71630215 | None:intergenic | 25.0% |
| !!! | ATTTTTTTGTACTGTGCTTT+TGG | + | chr5.3:71629651-71629670 | MS.gene37582:intron | 25.0% |
| !!! | CATTAGGTTTATTTTTGTTG+GGG | + | chr5.3:71628332-71628351 | MS.gene37582:intron | 25.0% |
| !!! | CATTTTTTCCATATCAGAAA+AGG | - | chr5.3:71631947-71631966 | None:intergenic | 25.0% |
| !!! | GGTGAAATAAGATTTGTTTT+TGG | + | chr5.3:71628740-71628759 | MS.gene37582:intron | 25.0% |
| !!! | GGTTGGTTATTTTGATTATA+TGG | + | chr5.3:71628353-71628372 | MS.gene37582:intron | 25.0% |
| !!! | TCTTTTCACCATTCATTTTT+TGG | + | chr5.3:71629269-71629288 | MS.gene37582:intron | 25.0% |
| !!! | TTACAAATGAAAAGCATTCA+CGG | - | chr5.3:71629808-71629827 | None:intergenic | 25.0% |
| AAAAGCTTTACATGTCTTCT+TGG | + | chr5.3:71630732-71630751 | MS.gene37582:intron | 30.0% | |
| AAACAAGGACTAATTTCACA+AGG | + | chr5.3:71630082-71630101 | MS.gene37582:intron | 30.0% | |
| AACAGATGCCAAAAAATGAA+TGG | - | chr5.3:71629280-71629299 | None:intergenic | 30.0% | |
| AACATTAGGGTACATAGTAA+GGG | - | chr5.3:71628663-71628682 | None:intergenic | 30.0% | |
| AACTAGCCAACTTAAGTAAA+AGG | + | chr5.3:71631983-71632002 | MS.gene37582:CDS | 30.0% | |
| AACTGTACTACACAATTTGT+CGG | - | chr5.3:71628830-71628849 | None:intergenic | 30.0% | |
| AAGCATATAGGTACTTCATA+AGG | - | chr5.3:71628971-71628990 | None:intergenic | 30.0% | |
| AAGTTCAGTTGTCGAAAATT+AGG | - | chr5.3:71630552-71630571 | None:intergenic | 30.0% | |
| AATTTCAGAAGAGAAGATTG+AGG | + | chr5.3:71631906-71631925 | MS.gene37582:CDS | 30.0% | |
| ATAAAATAACTCTGTTGTGG+GGG | + | chr5.3:71628458-71628477 | MS.gene37582:intron | 30.0% | |
| ATAGAAAACATGACCAAAAG+CGG | - | chr5.3:71629045-71629064 | None:intergenic | 30.0% | |
| CAAATTGTGTAGTACAGTTA+CGG | + | chr5.3:71628831-71628850 | MS.gene37582:intron | 30.0% | |
| CAAGAAGATAAACAGTCATT+TGG | - | chr5.3:71629432-71629451 | None:intergenic | 30.0% | |
| CATCTGTTAGAAATCTGTTT+GGG | + | chr5.3:71629292-71629311 | MS.gene37582:intron | 30.0% | |
| GACAAGAAAAAAAACCGAAA+GGG | - | chr5.3:71628225-71628244 | None:intergenic | 30.0% | |
| GAGATAAAATAACTCTGTTG+TGG | + | chr5.3:71628455-71628474 | MS.gene37582:intron | 30.0% | |
| GATAAAATAACTCTGTTGTG+GGG | + | chr5.3:71628457-71628476 | MS.gene37582:intron | 30.0% | |
| GGTAAAGAAGATTTCATGAT+TGG | - | chr5.3:71628880-71628899 | None:intergenic | 30.0% | |
| TAACATTAGGGTACATAGTA+AGG | - | chr5.3:71628664-71628683 | None:intergenic | 30.0% | |
| TAATTGATTATTGACAGGCT+AGG | + | chr5.3:71629514-71629533 | MS.gene37582:intron | 30.0% | |
| TACTTGCTTAATATTGATGC+CGG | + | chr5.3:71628433-71628452 | MS.gene37582:intron | 30.0% | |
| TGCATTTACATGTCTTTGTT+TGG | + | chr5.3:71628932-71628951 | MS.gene37582:intron | 30.0% | |
| TTGTTCTATATCCTCTTTCT+TGG | + | chr5.3:71630705-71630724 | MS.gene37582:intron | 30.0% | |
| ! | AAAAAACAACCTTTTCAACG+AGG | - | chr5.3:71628248-71628267 | None:intergenic | 30.0% |
| ! | AAAAACAACCTTTTCAACGA+GGG | - | chr5.3:71628247-71628266 | None:intergenic | 30.0% |
| ! | AATGGCTTTTCTGCAATTTA+TGG | + | chr5.3:71631392-71631411 | MS.gene37582:intron | 30.0% |
| ! | AATTGAAACCGAAAGCATAT+AGG | - | chr5.3:71628983-71629002 | None:intergenic | 30.0% |
| ! | AGCTATAACATAGTGGAATA+TGG | - | chr5.3:71631279-71631298 | None:intergenic | 30.0% |
| ! | ATGAAGTACCTATATGCTTT+CGG | + | chr5.3:71628972-71628991 | MS.gene37582:intron | 30.0% |
| ! | ATGCTCATAGATATCGTTTT+GGG | + | chr5.3:71628719-71628738 | MS.gene37582:intron | 30.0% |
| ! | TCCACTATATTATAGCTCTA+TGG | + | chr5.3:71631253-71631272 | MS.gene37582:intron | 30.0% |
| !! | AACTGATTTTGAAGATGAAC+CGG | - | chr5.3:71631866-71631885 | None:intergenic | 30.0% |
| !! | CAACAGAGTTATTTTATCTC+CGG | - | chr5.3:71628455-71628474 | None:intergenic | 30.0% |
| !!! | CAGTTGATAGCTATTTTACT+CGG | - | chr5.3:71631456-71631475 | None:intergenic | 30.0% |
| !!! | TTTCTTTTTCAATCCGTGAT+AGG | - | chr5.3:71631117-71631136 | None:intergenic | 30.0% |
| AAAAACCGAAAGGGTAAACA+AGG | - | chr5.3:71628216-71628235 | None:intergenic | 35.0% | |
| ACTAAGCAAATGCCCATTTA+TGG | - | chr5.3:71628901-71628920 | None:intergenic | 35.0% | |
| AGATATAGGGAAGATTGCAT+TGG | + | chr5.3:71629563-71629582 | MS.gene37582:CDS | 35.0% | |
| ATACGAGATAACACTTAGGA+GGG | + | chr5.3:71629773-71629792 | MS.gene37582:CDS | 35.0% | |
| ATGATACGTTGTCATAGCTT+TGG | + | chr5.3:71629017-71629036 | MS.gene37582:intron | 35.0% | |
| ATGCAAGCTGATGAAGATAT+AGG | + | chr5.3:71629549-71629568 | MS.gene37582:CDS | 35.0% | |
| ATTGAATTCTCACTCATTGC+AGG | + | chr5.3:71629403-71629422 | MS.gene37582:intron | 35.0% | |
| CAGGAATATTACTCAGCAAA+AGG | - | chr5.3:71631051-71631070 | None:intergenic | 35.0% | |
| GAACATACGAGATAACACTT+AGG | + | chr5.3:71629769-71629788 | MS.gene37582:CDS | 35.0% | |
| GACACAATCAAATTGCTAGT+TGG | - | chr5.3:71629358-71629377 | None:intergenic | 35.0% | |
| GACTACTTACAAACTAGAAG+AGG | - | chr5.3:71629594-71629613 | None:intergenic | 35.0% | |
| GCATCTGTTAGAAATCTGTT+TGG | + | chr5.3:71629291-71629310 | MS.gene37582:intron | 35.0% | |
| GCCATAGAGCTATAATATAG+TGG | - | chr5.3:71631257-71631276 | None:intergenic | 35.0% | |
| GCTATAGAGCTATAACATAG+TGG | - | chr5.3:71631286-71631305 | None:intergenic | 35.0% | |
| GGACAAGAAAAAAAACCGAA+AGG | - | chr5.3:71628226-71628245 | None:intergenic | 35.0% | |
| TAAAATAACTCTGTTGTGGG+GGG | + | chr5.3:71628459-71628478 | MS.gene37582:intron | 35.0% | |
| TAGAAATCTGTTTGGGAACA+TGG | + | chr5.3:71629299-71629318 | MS.gene37582:intron | 35.0% | |
| TCGGTTTCAATTACCAATAG+CGG | + | chr5.3:71628991-71629010 | MS.gene37582:intron | 35.0% | |
| TGATTATGGAAGTTCACTAC+TGG | + | chr5.3:71631357-71631376 | MS.gene37582:intron | 35.0% | |
| TGCAAGCTGATGAAGATATA+GGG | + | chr5.3:71629550-71629569 | MS.gene37582:CDS | 35.0% | |
| TGTATGCAACTTGGGTTTAA+GGG | + | chr5.3:71628617-71628636 | MS.gene37582:intron | 35.0% | |
| TTGGACCATGTTATATTCAG+CGG | + | chr5.3:71629860-71629879 | MS.gene37582:intron | 35.0% | |
| TTTAAATCTGAATCCGGATC+CGG | + | chr5.3:71631798-71631817 | MS.gene37582:CDS | 35.0% | |
| ! | AGCTAGCAAAATTTTTACGC+AGG | + | chr5.3:71629886-71629905 | MS.gene37582:intron | 35.0% |
| ! | CATGCTCATAGATATCGTTT+TGG | + | chr5.3:71628718-71628737 | MS.gene37582:intron | 35.0% |
| ! | CTAGCAAAATTTTTACGCAG+GGG | + | chr5.3:71629888-71629907 | MS.gene37582:intron | 35.0% |
| ! | GATCTACAGTTTTACTTCCT+TGG | - | chr5.3:71631588-71631607 | None:intergenic | 35.0% |
| ! | GCTAGCAAAATTTTTACGCA+GGG | + | chr5.3:71629887-71629906 | MS.gene37582:intron | 35.0% |
| ! | GTTTAAGGGGTAGTAGTTTT+TGG | + | chr5.3:71628631-71628650 | MS.gene37582:intron | 35.0% |
| ! | TGTTTATTATTTGGGGTAGC+CGG | + | chr5.3:71630588-71630607 | MS.gene37582:intron | 35.0% |
| ! | TTCGACAACTGAACTTGTTT+GGG | + | chr5.3:71630556-71630575 | MS.gene37582:intron | 35.0% |
| ! | TTTCGACAACTGAACTTGTT+TGG | + | chr5.3:71630555-71630574 | MS.gene37582:intron | 35.0% |
| !! | ACTTAAGTTGGCTAGTTGTA+AGG | - | chr5.3:71631980-71631999 | None:intergenic | 35.0% |
| !! | ATTTTGAAGATGAACCGGAT+GGG | - | chr5.3:71631861-71631880 | None:intergenic | 35.0% |
| !! | CTATTTCGTACAAAGTGTTG+AGG | + | chr5.3:71628587-71628606 | MS.gene37582:intron | 35.0% |
| !! | CTTAAGTTGGCTAGTTGTAA+GGG | - | chr5.3:71631979-71631998 | None:intergenic | 35.0% |
| !! | GGTCGGTATGTATTTTTATC+CGG | - | chr5.3:71630610-71630629 | None:intergenic | 35.0% |
| !! | TAGTGGATTGCAGAAAATAG+CGG | + | chr5.3:71629135-71629154 | MS.gene37582:intron | 35.0% |
| !! | TGTGAAGCATTGAAGCAAAA+CGG | + | chr5.3:71631643-71631662 | MS.gene37582:CDS | 35.0% |
| !!! | AGCTTTTAGAACCAAGAAAG+AGG | - | chr5.3:71630719-71630738 | None:intergenic | 35.0% |
| !!! | AGGTTTATTTTTGTTGGGGT+TGG | + | chr5.3:71628336-71628355 | MS.gene37582:intron | 35.0% |
| !!! | GGCTTACATTATTTTGAGTG+TGG | - | chr5.3:71631672-71631691 | None:intergenic | 35.0% |
| AAAATAACTCTGTTGTGGGG+GGG | + | chr5.3:71628460-71628479 | MS.gene37582:intron | 40.0% | |
| AAAGGGTAAACAAGGAAAGG+AGG | - | chr5.3:71628208-71628227 | None:intergenic | 40.0% | |
| AACGTATCATATGCCGCTAT+TGG | - | chr5.3:71629007-71629026 | None:intergenic | 40.0% | |
| AGAACAAATATAACCAGGGG+CGG | - | chr5.3:71630692-71630711 | None:intergenic | 40.0% | |
| AGCAAAGTTCCTGATTTAGG+CGG | + | chr5.3:71630815-71630834 | MS.gene37582:CDS | 40.0% | |
| AGCTTAACTTCCTCGATTTC+TGG | - | chr5.3:71631694-71631713 | None:intergenic | 40.0% | |
| ATATCAGAAAAGGACCATCC+AGG | - | chr5.3:71631937-71631956 | None:intergenic | 40.0% | |
| ATTTCATCCATGTCGTCATC+CGG | - | chr5.3:71631820-71631839 | None:intergenic | 40.0% | |
| CATACGAGATAACACTTAGG+AGG | + | chr5.3:71629772-71629791 | MS.gene37582:CDS | 40.0% | |
| CTTACAAACTAGAAGAGGCA+CGG | - | chr5.3:71629589-71629608 | None:intergenic | 40.0% | |
| GAACAATGCTTAACTTCCTC+AGG | - | chr5.3:71631736-71631755 | None:intergenic | 40.0% | |
| GCTTAACTTCCTCGATTTCT+GGG | - | chr5.3:71631693-71631712 | None:intergenic | 40.0% | |
| GGAGACCAAGAGAAGTAAAA+TGG | + | chr5.3:71630997-71631016 | MS.gene37582:CDS | 40.0% | |
| GTATGCAACTTGGGTTTAAG+GGG | + | chr5.3:71628618-71628637 | MS.gene37582:intron | 40.0% | |
| GTGAGCAAAGTTCCTGATTT+AGG | + | chr5.3:71630812-71630831 | MS.gene37582:CDS | 40.0% | |
| GTGTATGCAACTTGGGTTTA+AGG | + | chr5.3:71628616-71628635 | MS.gene37582:intron | 40.0% | |
| TAATGTAAGCCCAGAAATCG+AGG | + | chr5.3:71631681-71631700 | MS.gene37582:CDS | 40.0% | |
| TACGAGATAACACTTAGGAG+GGG | + | chr5.3:71629774-71629793 | MS.gene37582:CDS | 40.0% | |
| TATCAGAAAAGGACCATCCA+GGG | - | chr5.3:71631936-71631955 | None:intergenic | 40.0% | |
| TGAAATAGCAGACAGTTTCG+CGG | + | chr5.3:71629178-71629197 | MS.gene37582:intron | 40.0% | |
| TTTCTTGTCCCTCGTTGAAA+AGG | + | chr5.3:71628236-71628255 | MS.gene37582:intron | 40.0% | |
| ! | CCTTTCCTTGTTTACCCTTT+CGG | + | chr5.3:71628208-71628227 | MS.gene37582:intron | 40.0% |
| ! | GGAAGTTAAGCATTGTTCAC+CGG | + | chr5.3:71631738-71631757 | MS.gene37582:CDS | 40.0% |
| ! | TCGACAACTGAACTTGTTTG+GGG | + | chr5.3:71630557-71630576 | MS.gene37582:intron | 40.0% |
| ! | TGGATGGTCCTTTTCTGATA+TGG | + | chr5.3:71631936-71631955 | MS.gene37582:CDS | 40.0% |
| !! | GATTTTGAAGATGAACCGGA+TGG | - | chr5.3:71631862-71631881 | None:intergenic | 40.0% |
| !! | TACTGGCTTGTGAATGCAAA+TGG | + | chr5.3:71631374-71631393 | MS.gene37582:intron | 40.0% |
| !! | TATGGATGATGGGTTTCTCT+TGG | + | chr5.3:71628371-71628390 | MS.gene37582:intron | 40.0% |
| !! | TTTCGTACAAAGTGTTGAGG+AGG | + | chr5.3:71628590-71628609 | MS.gene37582:intron | 40.0% |
| !!! | ACTTCAGCTGGTTTTCTTAC+CGG | - | chr5.3:71631760-71631779 | None:intergenic | 40.0% |
| !!! | TTTTTCTTTTGGGGTAGCCA+AGG | + | chr5.3:71630643-71630662 | MS.gene37582:intron | 40.0% |
| ACAGAACTCGCGCAAGAAAT+AGG | - | chr5.3:71630908-71630927 | None:intergenic | 45.0% | |
| ACTTCCTCAGGTTCTTTGAC+TGG | - | chr5.3:71631724-71631743 | None:intergenic | 45.0% | |
| AGATTGAGGAATACCCTGGA+TGG | + | chr5.3:71631920-71631939 | MS.gene37582:CDS | 45.0% | |
| ATATGCAAAGTGGTGTGCAG+TGG | - | chr5.3:71631074-71631093 | None:intergenic | 45.0% | |
| CCGAAAGGGTAAACAAGGAA+AGG | - | chr5.3:71628211-71628230 | None:intergenic | 45.0% | |
| CTTCGCCGCTGAATATAACA+TGG | - | chr5.3:71629868-71629887 | None:intergenic | 45.0% | |
| GAAAGGAGGAACTTACAGCA+GGG | - | chr5.3:71628194-71628213 | None:intergenic | 45.0% | |
| GAAATAGCAGACAGTTTCGC+GGG | + | chr5.3:71629179-71629198 | MS.gene37582:intron | 45.0% | |
| GAGAAGATTGAGGAATACCC+TGG | + | chr5.3:71631916-71631935 | MS.gene37582:CDS | 45.0% | |
| GGTAAGAAAACCAGCTGAAG+TGG | + | chr5.3:71631759-71631778 | MS.gene37582:CDS | 45.0% | |
| GTACAGTTACGGTTCCTGAT+CGG | + | chr5.3:71628842-71628861 | MS.gene37582:intron | 45.0% | |
| TTCACCAGTCAAAGAACCTG+AGG | + | chr5.3:71631717-71631736 | MS.gene37582:CDS | 45.0% | |
| TTGTGCAGTGTTGCCTATCA+CGG | + | chr5.3:71631101-71631120 | MS.gene37582:intron | 45.0% | |
| TTTCGAACTACCACTTCAGC+TGG | - | chr5.3:71631772-71631791 | None:intergenic | 45.0% | |
| AACATGCGCATACCAGTGGA+AGG | + | chr5.3:71631527-71631546 | MS.gene37582:CDS | 50.0% | |
| ACACCAACTCCTATCCCATC+CGG | + | chr5.3:71631844-71631863 | MS.gene37582:CDS | 50.0% | |
| ACATGCGCATACCAGTGGAA+GGG | + | chr5.3:71631528-71631547 | MS.gene37582:CDS | 50.0% | |
| ACCAAGCTGTCACTAAGAGG+AGG | + | chr5.3:71630858-71630877 | MS.gene37582:CDS | 50.0% | |
| ACCTCCTCTTAGTGACAGCT+TGG | - | chr5.3:71630862-71630881 | None:intergenic | 50.0% | |
| ACGACCAAGCTGTCACTAAG+AGG | + | chr5.3:71630855-71630874 | MS.gene37582:CDS | 50.0% | |
| AGTTTCGCGGGCAATTGTGT+CGG | + | chr5.3:71629191-71629210 | MS.gene37582:intron | 50.0% | |
| ATGCTGTGTACTACGGTACG+AGG | + | chr5.3:71629090-71629109 | MS.gene37582:intron | 50.0% | |
| CGGTTCCTTTCATGTAGGAG+GGG | - | chr5.3:71630672-71630691 | None:intergenic | 50.0% | |
| GAAGATGAACCGGATGGGAT+AGG | - | chr5.3:71631856-71631875 | None:intergenic | 50.0% | |
| GAGGTGCGTGTATGCAACTT+GGG | + | chr5.3:71628609-71628628 | MS.gene37582:intron | 50.0% | |
| GCGGTTCCTTTCATGTAGGA+GGG | - | chr5.3:71630673-71630692 | None:intergenic | 50.0% | |
| GGAAAGGAGGAACTTACAGC+AGG | - | chr5.3:71628195-71628214 | None:intergenic | 50.0% | |
| GGCTGTCATGCTGTGTACTA+CGG | + | chr5.3:71629083-71629102 | MS.gene37582:intron | 50.0% | |
| TGACGATGATGACAGCGATG+AGG | + | chr5.3:71630976-71630995 | MS.gene37582:CDS | 50.0% | |
| TGCTGTGTACTACGGTACGA+GGG | + | chr5.3:71629091-71629110 | MS.gene37582:intron | 50.0% | |
| ! | CAGTTTTACTTCCTTGGCCG+CGG | - | chr5.3:71631582-71631601 | None:intergenic | 50.0% |
| !!! | CATAGCTTTGGCACCGCTTT+TGG | + | chr5.3:71629029-71629048 | MS.gene37582:intron | 50.0% |
| AGGGGCGGTTCCTTTCATGT+AGG | - | chr5.3:71630677-71630696 | None:intergenic | 55.0% | |
| CATGCGCATACCAGTGGAAG+GGG | + | chr5.3:71631529-71631548 | MS.gene37582:CDS | 55.0% | |
| CGAGAACATGCGCATACCAG+TGG | + | chr5.3:71631523-71631542 | MS.gene37582:CDS | 55.0% | |
| CTCGCGCAAGAAATAGGAGC+AGG | - | chr5.3:71630902-71630921 | None:intergenic | 55.0% | |
| GAACCGGATGGGATAGGAGT+TGG | - | chr5.3:71631850-71631869 | None:intergenic | 55.0% | |
| GCAGCAGAACCGCCTAAATC+AGG | - | chr5.3:71630827-71630846 | None:intergenic | 55.0% | |
| GGCGGTTCCTTTCATGTAGG+AGG | - | chr5.3:71630674-71630693 | None:intergenic | 55.0% | |
| GGCTACCCCTCCTACATGAA+AGG | + | chr5.3:71630664-71630683 | MS.gene37582:intron | 55.0% | |
| TACATGAAAGGAACCGCCCC+TGG | + | chr5.3:71630676-71630695 | MS.gene37582:intron | 55.0% | |
| TCATGTAGGAGGGGTAGCCT+TGG | - | chr5.3:71630663-71630682 | None:intergenic | 55.0% | |
| TCCATGTCGTCATCCGGATC+CGG | - | chr5.3:71631814-71631833 | None:intergenic | 55.0% | |
| TTAGGCGGTTCTGCTGCAAC+TGG | + | chr5.3:71630830-71630849 | MS.gene37582:CDS | 55.0% | |
| ! | CTCTGTTGTGGGGGGGTTTT+TGG | + | chr5.3:71628467-71628486 | MS.gene37582:intron | 55.0% |
| ! | GGAGGTGCGTGTATGCAACT+TGG | + | chr5.3:71628608-71628627 | MS.gene37582:intron | 55.0% |
| !! | GGATGGGATAGGAGTTGGTG+TGG | - | chr5.3:71631845-71631864 | None:intergenic | 55.0% |
| ATACCAGTGGAAGGGGCGGT+AGG | + | chr5.3:71631536-71631555 | MS.gene37582:CDS | 60.0% | |
| CGCATGTTCTCGCTGTGCGA+AGG | - | chr5.3:71631515-71631534 | None:intergenic | 60.0% | |
| GCAAAGTGGTGTGCAGTGGC+AGG | - | chr5.3:71631070-71631089 | None:intergenic | 60.0% | |
| TACCAGTGGAAGGGGCGGTA+GGG | + | chr5.3:71631537-71631556 | MS.gene37582:CDS | 60.0% | |
| TCCGGATCCGGATGACGACA+TGG | + | chr5.3:71631810-71631829 | MS.gene37582:CDS | 60.0% | |
| ! | GGATACGCAACGCACCGATC+AGG | - | chr5.3:71628859-71628878 | None:intergenic | 60.0% |
| ACCAGTGGAAGGGGCGGTAG+GGG | + | chr5.3:71631538-71631557 | MS.gene37582:CDS | 65.0% | |
| GCGCATACCAGTGGAAGGGG+CGG | + | chr5.3:71631532-71631551 | MS.gene37582:CDS | 65.0% | |
| ACCCCTACCGCCCCTTCCAC+TGG | - | chr5.3:71631542-71631561 | None:intergenic | 70.0% | |
| AGGGGTAGAGGCAGGGGACG+TGG | + | chr5.3:71631556-71631575 | MS.gene37582:CDS | 70.0% | |
| GGAAGGGGCGGTAGGGGTAG+AGG | + | chr5.3:71631544-71631563 | MS.gene37582:CDS | 70.0% | |
| GGCGGTAGGGGTAGAGGCAG+GGG | + | chr5.3:71631550-71631569 | MS.gene37582:CDS | 70.0% | |
| GGGCGGTAGGGGTAGAGGCA+GGG | + | chr5.3:71631549-71631568 | MS.gene37582:CDS | 70.0% | |
| AGAGGCAGGGGACGTGGCCG+CGG | + | chr5.3:71631562-71631581 | MS.gene37582:CDS | 75.0% | |
| GGGGCGGTAGGGGTAGAGGC+AGG | + | chr5.3:71631548-71631567 | MS.gene37582:CDS | 75.0% | |
| ! | AGGGGACGTGGCCGCGGCCA+AGG | + | chr5.3:71631568-71631587 | MS.gene37582:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 71628165 | 71632044 | 71628165 | ID=MS.gene37582 |
| chr5.3 | mRNA | 71628165 | 71632044 | 71628165 | ID=MS.gene37582.t1;Parent=MS.gene37582 |
| chr5.3 | exon | 71628165 | 71628197 | 71628165 | ID=MS.gene37582.t1.exon1;Parent=MS.gene37582.t1 |
| chr5.3 | CDS | 71628165 | 71628197 | 71628165 | ID=cds.MS.gene37582.t1;Parent=MS.gene37582.t1 |
| chr5.3 | exon | 71629531 | 71629603 | 71629531 | ID=MS.gene37582.t1.exon2;Parent=MS.gene37582.t1 |
| chr5.3 | CDS | 71629531 | 71629603 | 71629531 | ID=cds.MS.gene37582.t1;Parent=MS.gene37582.t1 |
| chr5.3 | exon | 71629730 | 71629823 | 71629730 | ID=MS.gene37582.t1.exon3;Parent=MS.gene37582.t1 |
| chr5.3 | CDS | 71629730 | 71629823 | 71629730 | ID=cds.MS.gene37582.t1;Parent=MS.gene37582.t1 |
| chr5.3 | exon | 71630763 | 71630879 | 71630763 | ID=MS.gene37582.t1.exon4;Parent=MS.gene37582.t1 |
| chr5.3 | CDS | 71630763 | 71630879 | 71630763 | ID=cds.MS.gene37582.t1;Parent=MS.gene37582.t1 |
| chr5.3 | exon | 71630961 | 71631018 | 71630961 | ID=MS.gene37582.t1.exon5;Parent=MS.gene37582.t1 |
| chr5.3 | CDS | 71630961 | 71631018 | 71630961 | ID=cds.MS.gene37582.t1;Parent=MS.gene37582.t1 |
| chr5.3 | exon | 71631523 | 71632044 | 71631523 | ID=MS.gene37582.t1.exon6;Parent=MS.gene37582.t1 |
| chr5.3 | CDS | 71631523 | 71632044 | 71631523 | ID=cds.MS.gene37582.t1;Parent=MS.gene37582.t1 |
| Gene Sequence |
| Protein sequence |
