AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37630.t1 MTR_5g088060 77.847 483 43 6 171 627 17 461 0.0 691
MS.gene37630.t1 MTR_5g088060 88.571 175 15 1 1 170 1 175 6.39e-100 313
MS.gene37630.t1 MTR_5g488160 77.847 483 43 6 171 627 17 461 0.0 691
MS.gene37630.t1 MTR_5g488160 88.571 175 15 1 1 170 1 175 6.39e-100 313
MS.gene37630.t1 MTR_5g088010 88.933 253 18 4 381 627 1 249 3.53e-147 426
MS.gene37630.t1 MTR_5g027570 58.188 287 53 8 352 627 1 231 1.17e-84 265
MS.gene37630.t1 MTR_5g088005 81.875 160 16 1 3 162 15 161 5.93e-81 253
MS.gene37630.t1 MTR_5g088005 65.000 180 15 3 171 349 24 156 2.20e-62 204
MS.gene37630.t1 MTR_5g088200 72.549 204 12 3 11 170 30 233 8.74e-81 273
MS.gene37630.t1 MTR_5g027770 48.276 348 82 9 3 324 36 311 7.38e-73 237
MS.gene37630.t1 MTR_5g027770 56.098 82 22 3 365 440 98 171 6.54e-15 76.6
MS.gene37630.t1 MTR_5g027550 42.761 297 81 8 352 627 1 229 7.24e-54 184
MS.gene37630.t1 MTR_5g027780 41.410 227 41 5 171 397 40 174 6.36e-32 122
MS.gene37630.t1 MTR_5g027780 52.586 116 20 3 11 118 39 127 4.94e-21 91.7
MS.gene37630.t1 MTR_8g063600 58.228 79 31 2 433 510 103 180 2.28e-22 98.2
MS.gene37630.t1 MTR_8g063870 51.064 94 45 1 417 510 74 166 2.91e-22 97.4
MS.gene37630.t1 MTR_5g069710 58.228 79 29 2 437 514 134 209 5.55e-22 97.4
MS.gene37630.t1 MTR_3g462790 64.179 67 21 1 437 503 149 212 9.55e-22 97.1
MS.gene37630.t1 MTR_1g111830 39.412 170 85 7 349 503 23 189 2.50e-21 94.0
MS.gene37630.t1 MTR_7g067080 46.087 115 48 3 437 549 142 244 4.65e-21 94.7
MS.gene37630.t1 MTR_5g081860 56.790 81 33 2 424 503 113 192 7.15e-21 93.2
MS.gene37630.t1 MTR_4g111975 53.165 79 32 3 433 509 135 210 7.26e-20 91.3
MS.gene37630.t1 MTR_1g048660 55.556 72 29 1 437 508 14 82 1.36e-18 81.3
MS.gene37630.t1 MTR_5g075760 42.241 116 64 2 392 507 64 176 2.35e-18 84.7
MS.gene37630.t1 MTR_3g104370 48.571 70 36 0 437 506 93 162 2.85e-18 84.7
MS.gene37630.t1 MTR_2g100930 53.846 65 27 1 437 501 111 172 1.47e-17 85.1
MS.gene37630.t1 MTR_4g100630 51.515 66 27 2 437 501 97 158 1.10e-16 82.0
MS.gene37630.t1 MTR_4g015130 56.667 60 23 1 445 504 3 59 2.28e-16 74.7
MS.gene37630.t1 MTR_6g092540 52.308 65 28 1 437 501 99 160 6.79e-16 79.0
MS.gene37630.t1 MTR_8g101650 65.217 46 16 0 437 482 107 152 7.13e-16 79.0
MS.gene37630.t1 MTR_5g037080 67.391 46 15 0 437 482 104 149 8.18e-16 79.3
MS.gene37630.t1 MTR_4g107230 68.889 45 14 0 437 481 86 130 1.02e-15 78.6
MS.gene37630.t1 MTR_5g075790 39.200 125 54 3 392 507 73 184 1.49e-15 76.6
MS.gene37630.t1 MTR_1g083180 39.683 126 55 7 403 510 13 135 4.39e-15 74.3
MS.gene37630.t1 MTR_2g090305 35.714 98 58 2 437 532 30 124 3.81e-14 71.6
MS.gene37630.t1 MTR_1g033620 55.932 59 22 2 451 508 21 76 1.16e-13 71.6
MS.gene37630.t1 MTR_0036s0260 40.260 77 43 1 437 513 30 103 1.37e-13 70.5
MS.gene37630.t1 MTR_3g070110 46.667 90 40 3 436 517 96 185 3.08e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37630.t1 AT5G58900 41.176 136 64 3 437 567 143 267 5.67e-23 100
MS.gene37630.t1 AT5G08520 56.790 81 31 2 433 512 115 192 1.94e-22 98.6
MS.gene37630.t1 AT5G04760 60.526 76 27 1 428 503 92 164 2.34e-22 96.3
MS.gene37630.t1 AT5G01200 61.429 70 23 2 437 505 148 214 4.17e-21 94.0
MS.gene37630.t1 AT2G38090 57.692 78 28 3 430 505 135 209 1.73e-20 92.8
MS.gene37630.t1 AT1G49010 53.659 82 33 3 433 512 131 209 6.14e-20 91.7
MS.gene37630.t1 AT5G61620 43.651 126 51 5 429 546 101 214 4.03e-19 89.4
MS.gene37630.t1 AT3G11280 43.443 122 50 5 437 547 129 242 2.52e-18 85.9
MS.gene37630.t1 AT3G11280 43.443 122 50 5 437 547 129 242 2.52e-18 85.9
MS.gene37630.t1 AT5G23650 52.632 76 33 1 437 512 122 194 4.87e-18 86.3
MS.gene37630.t1 AT3G10580 39.552 134 63 5 424 547 77 202 1.29e-17 83.6
MS.gene37630.t1 AT3G10580 38.028 142 70 5 424 555 77 210 1.45e-17 84.0
MS.gene37630.t1 AT5G05790 55.000 80 28 3 433 507 128 204 2.70e-17 83.2
MS.gene37630.t1 AT5G05790 55.000 80 28 3 433 507 128 204 2.70e-17 83.2
MS.gene37630.t1 AT5G47390 45.745 94 44 4 437 527 98 187 4.60e-17 84.0
MS.gene37630.t1 AT1G70000 67.391 46 15 0 437 482 100 145 2.10e-16 80.1
MS.gene37630.t1 AT1G70000 67.391 46 15 0 437 482 100 145 2.10e-16 80.1
MS.gene37630.t1 AT5G56840 55.172 58 26 0 437 494 93 150 2.69e-16 79.0
MS.gene37630.t1 AT4G09450 54.412 68 28 1 437 504 93 157 3.83e-16 77.8
MS.gene37630.t1 AT3G16350 65.217 46 16 0 437 482 139 184 1.44e-15 79.3
MS.gene37630.t1 AT1G74840 68.889 45 14 0 437 481 98 142 1.50e-15 77.0
MS.gene37630.t1 AT1G74840 68.889 45 14 0 437 481 98 142 2.13e-15 77.0
MS.gene37630.t1 AT1G19000 68.889 45 14 0 437 481 104 148 3.25e-15 77.0
MS.gene37630.t1 AT1G19000 68.889 45 14 0 437 481 104 148 3.25e-15 77.0
MS.gene37630.t1 AT3G10590 50.000 68 30 2 437 504 113 176 1.74e-12 67.4

Find 179 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCATATCTTTCACATTT+TGG 0.099316 5.3:-70765207 None:intergenic
TCACCTTGTTCTTGGGTATT+TGG 0.139349 5.3:-70763098 None:intergenic
TCAACATGATTCATAGGTTT+TGG 0.219569 5.3:-70762368 None:intergenic
TCAACATGATTCATAGGTTT+TGG 0.219569 5.3:-70763221 None:intergenic
CCTGCTGCTGCCGGGGATAC+AGG 0.250754 5.3:-70762972 None:intergenic
CTGTCCAATGCCCTTTCCTT+GGG 0.257949 5.3:-70764834 None:intergenic
TCCTATAGCTCCTTCTGTTC+AGG 0.275418 5.3:+70762424 MS.gene37630:CDS
TCCTATAGCTCCTTCTGTTC+AGG 0.275418 5.3:+70763277 MS.gene37630:CDS
CTTGGGGCATGACTTTCTTC+TGG 0.281577 5.3:-70764817 None:intergenic
CCTGCTGCAGCCGGGGATAC+AGG 0.292706 5.3:-70763919 None:intergenic
TTCTCAAGTTTGTTCATATC+AGG 0.295923 5.3:-70765589 None:intergenic
TCACATGGTCACCTTGTTCT+TGG 0.300461 5.3:-70763106 None:intergenic
TCTGTCCAATGCCCTTTCCT+TGG 0.314383 5.3:-70764835 None:intergenic
CTGAACATGTTTGGCATCAT+TGG 0.316454 5.3:-70763021 None:intergenic
TGGGTATTTGGCCTTCCATT+TGG 0.324095 5.3:-70763086 None:intergenic
TATGCTTTCCCACCTGGTTC+AGG 0.329227 5.3:+70763868 MS.gene37630:CDS
CCATTTGTGTTGTTGCGCTT+GGG 0.329671 5.3:-70763742 None:intergenic
TGGATATTTGGCCTTCCATT+TGG 0.341904 5.3:-70764033 None:intergenic
CCACCAAAATGTGAAAGATA+TGG 0.352224 5.3:+70765204 MS.gene37630:CDS
CACATGGTCACCTTGTTCTT+GGG 0.355028 5.3:-70763105 None:intergenic
GCCATTTGTGTTGTTGCGCT+TGG 0.355090 5.3:-70763743 None:intergenic
TAGAAGAAATCAAACGGTTC+TGG 0.355215 5.3:+70763667 MS.gene37630:intron
CCTGCATATGCTTTCCCACC+TGG 0.358776 5.3:+70763862 MS.gene37630:CDS
TGAGAAGATGCGCAACTTGT+TGG 0.359768 5.3:+70765606 MS.gene37630:CDS
CACCGGAGGCTGAACATGTT+TGG 0.362724 5.3:-70763030 None:intergenic
CACCGGAGGCTGAACATGTT+TGG 0.362724 5.3:-70763977 None:intergenic
ACATTCTCAACATGATTCAT+AGG 0.366509 5.3:-70762374 None:intergenic
ACATTCTCAACATGATTCAT+AGG 0.366509 5.3:-70763227 None:intergenic
GATGCTCCTGTGTTGGTTGT+TGG 0.370634 5.3:+70763161 MS.gene37630:CDS
TTGGATAAAGCAACACCAAC+TGG 0.371101 5.3:-70765552 None:intergenic
GATGTTCCTGTGTTGGTTGT+TGG 0.372353 5.3:+70762308 MS.gene37630:CDS
AAACAGAAATCAAACGGTTC+TGG 0.380690 5.3:+70762816 MS.gene37630:intron
TGCTATGCTCAGAGGGATCT+TGG 0.382368 5.3:-70764660 None:intergenic
AATCGGTTCTACAATTCCTT+TGG 0.396063 5.3:+70765417 MS.gene37630:CDS
GTGTTGTTGCGCTTGGGGCC+TGG 0.396203 5.3:-70763736 None:intergenic
AACCTTGTCCTGCTGCTGCC+GGG 0.402092 5.3:-70762980 None:intergenic
TTCTGTGCCTAGTGTTGGTC+AGG 0.402578 5.3:+70762397 MS.gene37630:CDS
TTCTGTGCCTAGTGTTGGTC+AGG 0.402578 5.3:+70763250 MS.gene37630:CDS
GGACGAAAATTCGGAGCAAC+AGG 0.414645 5.3:-70763811 None:intergenic
CTGAACATGTTTGGCATCAA+TGG 0.415429 5.3:-70763968 None:intergenic
TATGCTATTGATTATCCAAA+TGG 0.421444 5.3:+70764018 MS.gene37630:CDS
CCCAAGCGCAACAACACAAA+TGG 0.425501 5.3:+70763742 MS.gene37630:CDS
AAATATTTCAAAAGAATTTG+TGG 0.425853 5.3:+70765132 MS.gene37630:CDS
TCCTTTAGTCACTGCTCCTA+TGG 0.430956 5.3:+70765462 MS.gene37630:CDS
GGATTCTCGCCATTAGGATA+AGG 0.435944 5.3:-70762945 None:intergenic
TATGCTGTTAATTATCCAAA+TGG 0.436533 5.3:+70763071 MS.gene37630:CDS
GGATTCTCACCATTAGGATA+AGG 0.437709 5.3:-70763892 None:intergenic
GGCTTAGGATTCTCGCCATT+AGG 0.439906 5.3:-70762951 None:intergenic
TGTGAAAGATATGGAGAAGA+AGG 0.441203 5.3:+70765213 MS.gene37630:CDS
GAACAACAACAGGAGAAAAC+TGG 0.441684 5.3:+70764685 MS.gene37630:CDS
GGCTTAGGATTCTCACCATT+AGG 0.442479 5.3:-70763898 None:intergenic
ATTTGTGTTACTGTTGCGCT+TGG 0.444589 5.3:-70762892 None:intergenic
GGTGATGGCATCTTATTCTT+CGG 0.445274 5.3:-70762849 None:intergenic
ATTGTCCTTGTTGTTTAAGA+TGG 0.446908 5.3:-70765515 None:intergenic
AAACCTTGTCCTGCTGCTGC+CGG 0.447814 5.3:-70762981 None:intergenic
ACCACCCGACTCAATGATAT+CGG 0.449690 5.3:-70764710 None:intergenic
TTACTGTTGCGCTTGGGACC+TGG 0.453629 5.3:-70762885 None:intergenic
CCTGTATCCCCGGCTGCAGC+AGG 0.462309 5.3:+70763919 MS.gene37630:CDS
TTGGTGTTGCTTTATCCAAT+CGG 0.462526 5.3:+70765556 MS.gene37630:CDS
CCTGTATCCCCGGCAGCAGC+AGG 0.464792 5.3:+70762972 MS.gene37630:CDS
GGTTCAGGACCTTATCCTAA+TGG 0.464993 5.3:+70763883 MS.gene37630:CDS
AACCTTGTCCTGCTGCAGCC+GGG 0.469596 5.3:-70763927 None:intergenic
GGTACCCTAGGACGAAAATT+CGG 0.472201 5.3:-70763820 None:intergenic
GCTCATTTAAATCAATTTGA+AGG 0.475975 5.3:-70764627 None:intergenic
TCAAATTGATTTAAATGAGC+CGG 0.477484 5.3:+70764630 MS.gene37630:CDS
AAACCTTGTCCTGCTGCAGC+CGG 0.478250 5.3:-70763928 None:intergenic
GCATAGCATGGAACAACAAC+AGG 0.485938 5.3:+70764675 MS.gene37630:CDS
ACAGGCGGCTGCTGATGATA+AGG 0.487188 5.3:-70763793 None:intergenic
GGCTTTCGATAGCGCGGTGA+TGG 0.487676 5.3:-70762864 None:intergenic
AGAAAGAGCCGGCGAAGACT+TGG 0.492169 5.3:-70763186 None:intergenic
GCTGCCGGGGATACAGGCTT+AGG 0.492601 5.3:-70762966 None:intergenic
AAAGTCATGCCCCAAGGAAA+GGG 0.493395 5.3:+70764824 MS.gene37630:CDS
AGAAAGAGCTGGCGAAGACT+TGG 0.494263 5.3:-70762333 None:intergenic
ATGTTGTGCTTGCTGCCAAT+CGG 0.496477 5.3:+70765400 MS.gene37630:CDS
ACGGTTCTGGAAATTTCAAT+CGG 0.496809 5.3:+70763680 MS.gene37630:CDS
GTGACGATGCCTTATCCTAA+TGG 0.498221 5.3:+70762936 MS.gene37630:CDS
GAATCCTAAGCCTGTATCCC+CGG 0.504373 5.3:+70762962 MS.gene37630:CDS
GCAGCCGGGGATACAGGCTT+AGG 0.505668 5.3:-70763913 None:intergenic
GAATCCTAAGCCTGTATCCC+CGG 0.509484 5.3:+70763909 MS.gene37630:CDS
CATTTGTGTTGTTGCGCTTG+GGG 0.510276 5.3:-70763741 None:intergenic
TGCCAAACATGTTCAGCCTC+CGG 0.511829 5.3:+70763975 MS.gene37630:CDS
TGCCAAACATGTTCAGCCTC+CGG 0.513848 5.3:+70763028 MS.gene37630:CDS
TAATTAACAGCATAAGCATT+CGG 0.516489 5.3:-70763062 None:intergenic
ACCTGAACAGAAGGAGCTAT+AGG 0.516493 5.3:-70762425 None:intergenic
TCACCGCGCTATCGAAAGCC+AGG 0.521803 5.3:+70762867 MS.gene37630:CDS
TTTGTGTTACTGTTGCGCTT+GGG 0.522204 5.3:-70762891 None:intergenic
GGAGTCTCATGTTGTTCCAT+AGG 0.524662 5.3:-70765478 None:intergenic
ATGCCCCAAGGAAAGGGCAT+TGG 0.524782 5.3:+70764830 MS.gene37630:CDS
TCACCATGCTATCGAAAGCC+AGG 0.525059 5.3:+70763718 MS.gene37630:CDS
GCATGGCTAGCAATTTGAGT+TGG 0.525594 5.3:-70765166 None:intergenic
TAGTGTTGATGCTCCTGTGT+TGG 0.526887 5.3:+70763154 MS.gene37630:CDS
GAAAGTCATGCCCCAAGGAA+AGG 0.527463 5.3:+70764823 MS.gene37630:CDS
AAGTGTTGATGTTCCTGTGT+TGG 0.530471 5.3:+70762301 MS.gene37630:CDS
ATTAAATAGAAGAAATCAAA+CGG 0.530787 5.3:+70763661 MS.gene37630:intron
GGCACCGATATCATTGAGTC+GGG 0.531762 5.3:+70764706 MS.gene37630:CDS
TAATCAATAGCATAAGCATT+CGG 0.533630 5.3:-70764009 None:intergenic
CAAGGTGACCATGTGAATCA+TGG 0.533701 5.3:+70763113 MS.gene37630:CDS
GTGATTAAACAGAAATCAAA+CGG 0.535847 5.3:+70762810 MS.gene37630:intron
TGTTCCATGCTATGCTCAGA+GGG 0.536332 5.3:-70764667 None:intergenic
ACCTGAACAGAAGGAGCTAT+AGG 0.539393 5.3:-70763278 None:intergenic
AAGCGCAACAGTAACACAAA+TGG 0.541697 5.3:+70762894 MS.gene37630:CDS
TGTTGGAACCAAGTCTTCGC+CGG 0.542383 5.3:+70763178 MS.gene37630:CDS
TGATAAGGCCTCGTCGCCAC+AGG 0.544440 5.3:-70763778 None:intergenic
GGCTTTCGATAGCATGGTGA+TGG 0.547691 5.3:-70763715 None:intergenic
ATCAGAGTTTAGAATTGCAA+TGG 0.548775 5.3:-70764734 None:intergenic
AATGTTTCTGTGCCTAGTGT+TGG 0.550067 5.3:+70762392 MS.gene37630:CDS
AATGTTTCTGTGCCTAGTGT+TGG 0.550067 5.3:+70763245 MS.gene37630:CDS
GTCTGTTGCATTCCTTGAGG+AGG 0.550846 5.3:-70765349 None:intergenic
TCCCCGGCTGCAGCAGGACA+AGG 0.550986 5.3:+70763925 MS.gene37630:CDS
GGGCCTGGCTTTCGATAGCA+TGG 0.552238 5.3:-70763721 None:intergenic
TTTAAGATGGCAGTGTCTTG+AGG 0.553601 5.3:-70765502 None:intergenic
ATTTAAATCAATTTGAAGGA+GGG 0.554059 5.3:-70764623 None:intergenic
AACAAACGAACCTGAACAGA+AGG 0.557127 5.3:-70763287 None:intergenic
TCCATAGGAGCAGTGACTAA+AGG 0.557140 5.3:-70765463 None:intergenic
TTCGGATCTCCTTGCACCGG+AGG 0.558249 5.3:-70763044 None:intergenic
TTCGGATCTCCTTGCACCGG+AGG 0.558249 5.3:-70763991 None:intergenic
TGTCCAATGCCCTTTCCTTG+GGG 0.558952 5.3:-70764833 None:intergenic
ATGTGAGGTGGAGGTACCCT+AGG 0.561843 5.3:-70763832 None:intergenic
CATGTTCAGCCTCCGGTGCA+AGG 0.562364 5.3:+70763035 MS.gene37630:CDS
CATGTTCAGCCTCCGGTGCA+AGG 0.562364 5.3:+70763982 MS.gene37630:CDS
GTAATTATGGTGAGGATCAG+AGG 0.562867 5.3:+70762263 None:intergenic
TTGGCATCATTGGCATGAGC+AGG 0.563369 5.3:-70763011 None:intergenic
AACAATCGAACCTGAACAGA+AGG 0.565912 5.3:-70762434 None:intergenic
ACCTTGTCCTGCTGCTGCCG+GGG 0.566255 5.3:-70762979 None:intergenic
TTGTTCCATGCTATGCTCAG+AGG 0.567759 5.3:-70764668 None:intergenic
GAGGGATCTTGGACTGAAGC+CGG 0.570243 5.3:-70764649 None:intergenic
CATTTAAATCAATTTGAAGG+AGG 0.570848 5.3:-70764624 None:intergenic
TCCCCGGCAGCAGCAGGACA+AGG 0.572616 5.3:+70762978 MS.gene37630:CDS
GGATAAGGCATCGTCACCAC+AGG 0.573697 5.3:-70762930 None:intergenic
TCAGGAAGTGTAGAACCGAT+TGG 0.577352 5.3:-70765571 None:intergenic
ACCTTGTCCTGCTGCAGCCG+GGG 0.578501 5.3:-70763926 None:intergenic
GCATCATTGGCATGAGCAGG+TGG 0.581815 5.3:-70763008 None:intergenic
TGGCACCGATATCATTGAGT+CGG 0.583638 5.3:+70764705 MS.gene37630:CDS
GGAACAGCAATGTGAGGTGG+AGG 0.583732 5.3:-70763841 None:intergenic
GAAGAAAAGTAATTATGGTG+AGG 0.586984 5.3:+70762255 None:intergenic
ATTGGCAGCAAGCACAACAT+AGG 0.587278 5.3:-70765397 None:intergenic
CCAGGTGGGAAAGCATATGC+AGG 0.588904 5.3:-70763862 None:intergenic
TTAGGATAAGGTCCTGAACC+AGG 0.588996 5.3:-70763880 None:intergenic
ACACTTTGTAGCTCAACTGA+AGG 0.589388 5.3:-70765322 None:intergenic
AAAGGAATTGTAGAACCGAT+TGG 0.590956 5.3:-70765415 None:intergenic
GTTTGAGCATCAGAAAGAGC+TGG 0.591524 5.3:-70762344 None:intergenic
GTTTGAGCATCAGAAAGAGC+CGG 0.593248 5.3:-70763197 None:intergenic
AGATCCCTCTGAGCATAGCA+TGG 0.596307 5.3:+70764663 MS.gene37630:CDS
TGGATAAAGCAACACCAACT+GGG 0.597123 5.3:-70765551 None:intergenic
CTGTTAATTATCCAAATGGA+AGG 0.601168 5.3:+70763075 MS.gene37630:CDS
CGAAAATTCGGAGCAACAGG+CGG 0.606908 5.3:-70763808 None:intergenic
CACTGCCATCTTAAACAACA+AGG 0.607403 5.3:+70765510 MS.gene37630:CDS
GGATCAGAGGTGGAAAGCAG+AGG 0.607762 5.3:+70762276 MS.gene37630:CDS
ATTAAACAAGAATGACACAT+TGG 0.608999 5.3:+70765267 MS.gene37630:CDS
GCATCAATGGCATGAGCAGG+TGG 0.609092 5.3:-70763955 None:intergenic
GGAGCAACCTGACCAACACT+AGG 0.611273 5.3:-70762404 None:intergenic
GGAGCAACCTGACCAACACT+AGG 0.611273 5.3:-70763257 None:intergenic
ACCGATATCATTGAGTCGGG+TGG 0.615037 5.3:+70764709 MS.gene37630:CDS
CTATTGATTATCCAAATGGA+AGG 0.618008 5.3:+70764022 MS.gene37630:CDS
GCATTCGGATCTCCTTGCAC+CGG 0.618195 5.3:-70763047 None:intergenic
GCATTCGGATCTCCTTGCAC+CGG 0.618195 5.3:-70763994 None:intergenic
CAAAGTGTGATTCCTCCTCA+AGG 0.618896 5.3:+70765337 MS.gene37630:CDS
TTCACTTTCCTGTGGCGACG+AGG 0.622515 5.3:+70763770 MS.gene37630:CDS
TTGGCATCAATGGCATGAGC+AGG 0.623729 5.3:-70763958 None:intergenic
ATCGTCACCACAGGAAAGTG+AGG 0.627432 5.3:-70762921 None:intergenic
CAGAAGAAAGTCATGCCCCA+AGG 0.636413 5.3:+70764818 MS.gene37630:CDS
GCAGGAACAGCAATGTGAGG+TGG 0.639750 5.3:-70763844 None:intergenic
GTGACCATGTGAATCATGGT+CGG 0.644274 5.3:+70763117 MS.gene37630:CDS
AAGATGGCAGTGTCTTGAGG+AGG 0.644314 5.3:-70765499 None:intergenic
AGGCCAAATACCCAAGAACA+AGG 0.645778 5.3:+70763095 MS.gene37630:CDS
TGACAACTTGCAAACCCAGT+TGG 0.648867 5.3:+70765537 MS.gene37630:CDS
ATTATGGTGAGGATCAGAGG+TGG 0.649445 5.3:+70762266 None:intergenic
AACACAGGAGCATCAACACT+AGG 0.653659 5.3:-70763152 None:intergenic
TGGCACGCTTCACTTTCCTG+TGG 0.655390 5.3:+70763762 MS.gene37630:CDS
GATAAGGTCCTGAACCAGGT+GGG 0.657071 5.3:-70763876 None:intergenic
AAGGAAAGGGCATTGGACAG+AGG 0.658250 5.3:+70764837 MS.gene37630:CDS
TGGCATGCCTCACTTTCCTG+TGG 0.662752 5.3:+70762914 MS.gene37630:CDS
GGACCTGGCTTTCGATAGCG+CGG 0.664348 5.3:-70762870 None:intergenic
TTGGTTCCAACAACCAACAC+AGG 0.665985 5.3:-70762314 None:intergenic
TTGGTTCCAACAACCAACAC+AGG 0.665985 5.3:-70763167 None:intergenic
TGTGTCTGTTGCATTCCTTG+AGG 0.673315 5.3:-70765352 None:intergenic
TATGCAGGAACAGCAATGTG+AGG 0.684479 5.3:-70763847 None:intergenic
GGATAAGGTCCTGAACCAGG+TGG 0.691288 5.3:-70763877 None:intergenic
GATGCCGACCATGATTCACA+TGG 0.766610 5.3:-70763121 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAACTTTCAAACAT+AGG - chr5.3:70764901-70764920 None:intergenic 15.0%
!! AAATATTTCAAAAGAATTTG+TGG + chr5.3:70765132-70765151 MS.gene37630:CDS 15.0%
!! ATTAAATAGAAGAAATCAAA+CGG + chr5.3:70763661-70763680 MS.gene37630:intron 15.0%
!! ATTATGATATCTTCTTGTTA+TGG + chr5.3:70764322-70764341 MS.gene37630:intron 20.0%
!! ATTTAAATCAATTTGAAGGA+GGG - chr5.3:70764626-70764645 None:intergenic 20.0%
!! TAAACAATGAGTGAAAAATA+TGG + chr5.3:70762655-70762674 MS.gene37630:intron 20.0%
!! TAATTCAAATTGGATGAAAT+TGG + chr5.3:70764534-70764553 MS.gene37630:intron 20.0%
!! TGAAAGTTAAGAAAATTACT+TGG - chr5.3:70764373-70764392 None:intergenic 20.0%
!! TTCAAAAAATATTATGCATG+TGG + chr5.3:70764508-70764527 MS.gene37630:intron 20.0%
!!! ATATATAGGTTGTTTTTGAA+GGG + chr5.3:70765079-70765098 MS.gene37630:intron 20.0%
!!! ATTTTCTTAACTTTCATGAT+TGG + chr5.3:70764377-70764396 MS.gene37630:intron 20.0%
!!! CATGCATAATATTTTTTGAA+TGG - chr5.3:70764508-70764527 None:intergenic 20.0%
!!! TATATATAGGTTGTTTTTGA+AGG + chr5.3:70765078-70765097 MS.gene37630:intron 20.0%
!!! TATTTTTTGTATAGAAAGCA+TGG + chr5.3:70764576-70764595 MS.gene37630:intron 20.0%
!!! TCTACAATATTTTTAACTCT+GGG + chr5.3:70763590-70763609 MS.gene37630:intron 20.0%
!!! TTCTACAATATTTTTAACTC+TGG + chr5.3:70763589-70763608 MS.gene37630:intron 20.0%
! AAACAACGAGTCAAAAATAT+TGG + chr5.3:70763506-70763525 MS.gene37630:intron 25.0%
! ATCATATAAAAGACAAGATC+AGG - chr5.3:70764209-70764228 None:intergenic 25.0%
! ATTAAACAAGAATGACACAT+TGG + chr5.3:70765267-70765286 MS.gene37630:CDS 25.0%
! CACATTCATTCTCTATATAT+AGG + chr5.3:70765065-70765084 MS.gene37630:intron 25.0%
! CATGTGGATATAATTCAAAT+TGG + chr5.3:70764524-70764543 MS.gene37630:intron 25.0%
! CATTTAAATCAATTTGAAGG+AGG - chr5.3:70764627-70764646 None:intergenic 25.0%
! GCTCATTTAAATCAATTTGA+AGG - chr5.3:70764630-70764649 None:intergenic 25.0%
! GTGATTAAACAGAAATCAAA+CGG + chr5.3:70762810-70762829 MS.gene37630:intron 25.0%
! TAATCAATAGCATAAGCATT+CGG - chr5.3:70764012-70764031 None:intergenic 25.0%
! TAATTAACAGCATAAGCATT+CGG - chr5.3:70763065-70763084 None:intergenic 25.0%
! TATGCTGTTAATTATCCAAA+TGG + chr5.3:70763071-70763090 MS.gene37630:CDS 25.0%
! TCTACAATATTCTTAACTCT+GGG + chr5.3:70762742-70762761 MS.gene37630:intron 25.0%
! TTCTACAATATTCTTAACTC+TGG + chr5.3:70762741-70762760 MS.gene37630:intron 25.0%
! TTCTTATGCTTGCAATAATA+TGG - chr5.3:70763444-70763463 None:intergenic 25.0%
!! GTTTGATTTCTGTTTAATCA+CGG - chr5.3:70762811-70762830 None:intergenic 25.0%
!! TATGCTATTGATTATCCAAA+TGG + chr5.3:70764018-70764037 MS.gene37630:CDS 25.0%
!! TCAAATTGATTTAAATGAGC+CGG + chr5.3:70764630-70764649 MS.gene37630:CDS 25.0%
!! TTAGAGTAATGTGATTTTGA+TGG + chr5.3:70763364-70763383 MS.gene37630:intron 25.0%
!! TTAGTGTAATGTGATTTTGA+TGG + chr5.3:70762511-70762530 MS.gene37630:intron 25.0%
!!! AGGCATAATTGATTTGATTA+AGG + chr5.3:70764416-70764435 MS.gene37630:intron 25.0%
!!! TATATAGGTTGTTTTTGAAG+GGG + chr5.3:70765080-70765099 MS.gene37630:intron 25.0%
!!! TATTGTTTTTTTCCCTTCAA+TGG + chr5.3:70763552-70763571 MS.gene37630:intron 25.0%
!!! TTGGTGGATAAAGTATTTTT+GGG - chr5.3:70765191-70765210 None:intergenic 25.0%
!!! TTTGGTGGATAAAGTATTTT+TGG - chr5.3:70765192-70765211 None:intergenic 25.0%
ACATTCTCAACATGATTCAT+AGG - chr5.3:70762377-70762396 None:intergenic 30.0%
AGAAGGAGAAAAAGAGAAAA+AGG + chr5.3:70765230-70765249 MS.gene37630:CDS 30.0%
CTCTTATGCTTGCAATAATA+TGG - chr5.3:70762592-70762611 None:intergenic 30.0%
CTGTTAATTATCCAAATGGA+AGG + chr5.3:70763075-70763094 MS.gene37630:CDS 30.0%
TGGAGTCGACAAATTTATTT+AGG + chr5.3:70763526-70763545 MS.gene37630:intron 30.0%
TTACTTTGATACCATTGAAG+TGG + chr5.3:70764253-70764272 MS.gene37630:intron 30.0%
TTTAATCACAGATCCATACA+CGG - chr5.3:70763647-70763666 None:intergenic 30.0%
! ATCAGAGTTTAGAATTGCAA+TGG - chr5.3:70764737-70764756 None:intergenic 30.0%
! CTATTGATTATCCAAATGGA+AGG + chr5.3:70764022-70764041 MS.gene37630:CDS 30.0%
! TCAACATGATTCATAGGTTT+TGG - chr5.3:70762371-70762390 None:intergenic 30.0%
! TCTCCATATCTTTCACATTT+TGG - chr5.3:70765210-70765229 None:intergenic 30.0%
! TCTTGTTATGGTTCTGTAAT+TGG + chr5.3:70764334-70764353 MS.gene37630:intron 30.0%
! TTCTCAAGTTTGTTCATATC+AGG - chr5.3:70765592-70765611 None:intergenic 30.0%
!! ACAGCTTTTATTTCCATTGA+AGG - chr5.3:70763568-70763587 None:intergenic 30.0%
!! ATTGTCCTTGTTGTTTAAGA+TGG - chr5.3:70765518-70765537 None:intergenic 30.0%
!! CAGCTTTTATTTCCATTGAA+GGG - chr5.3:70763567-70763586 None:intergenic 30.0%
!! CTGTAATTGGTTTGAGTAAT+TGG + chr5.3:70764347-70764366 MS.gene37630:intron 30.0%
!!! ATTGTTTTTTATCCCTTCGA+TGG + chr5.3:70762704-70762723 MS.gene37630:intron 30.0%
!!! CATCATTTTTTGAGTAAACC+GGG + chr5.3:70764439-70764458 MS.gene37630:intron 30.0%
!!! GCATCATTTTTTGAGTAAAC+CGG + chr5.3:70764438-70764457 MS.gene37630:intron 30.0%
!!! TCACCTTGTTTTTGGATATT+TGG - chr5.3:70764048-70764067 None:intergenic 30.0%
AAACAGAAATCAAACGGTTC+TGG + chr5.3:70762816-70762835 MS.gene37630:intron 35.0%
AAAGGAATTGTAGAACCGAT+TGG - chr5.3:70765418-70765437 None:intergenic 35.0%
AGGCCAAATATCCAAAAACA+AGG + chr5.3:70764042-70764061 MS.gene37630:CDS 35.0%
CCACCAAAATGTGAAAGATA+TGG + chr5.3:70765204-70765223 MS.gene37630:CDS 35.0%
GAAACTTAACCAAGAAAACG+AGG - chr5.3:70764142-70764161 None:intergenic 35.0%
GCAACTAAAATCCACTTCAA+TGG - chr5.3:70764267-70764286 None:intergenic 35.0%
GGGATGAAAAAACATGGAAA+GGG + chr5.3:70765100-70765119 MS.gene37630:CDS 35.0%
GTCAATGAAGTTCATTCACA+TGG - chr5.3:70764071-70764090 None:intergenic 35.0%
TAGAAGAAATCAAACGGTTC+TGG + chr5.3:70763667-70763686 MS.gene37630:intron 35.0%
TGTGAAAGATATGGAGAAGA+AGG + chr5.3:70765213-70765232 MS.gene37630:CDS 35.0%
TTGAAGGGGATGAAAAAACA+TGG + chr5.3:70765094-70765113 MS.gene37630:CDS 35.0%
TTTAATCACGGATCCATACA+CGG - chr5.3:70762799-70762818 None:intergenic 35.0%
! AATCGGTTCTACAATTCCTT+TGG + chr5.3:70765417-70765436 MS.gene37630:CDS 35.0%
! CCATATCTTTCACATTTTGG+TGG - chr5.3:70765207-70765226 None:intergenic 35.0%
! TTGGCTAGTTCATCTGATTA+AGG + chr5.3:70764396-70764415 MS.gene37630:intron 35.0%
!! ACAGCTTTTATTTCCATCGA+AGG - chr5.3:70762720-70762739 None:intergenic 35.0%
!! ACGGTTCTGGAAATTTCAAT+CGG + chr5.3:70763680-70763699 MS.gene37630:CDS 35.0%
!! AGATTTTAGCCTCGTTTTCT+TGG + chr5.3:70764130-70764149 MS.gene37630:intron 35.0%
!! CAGCTTTTATTTCCATCGAA+GGG - chr5.3:70762719-70762738 None:intergenic 35.0%
!! TTGGTGTTGCTTTATCCAAT+CGG + chr5.3:70765556-70765575 MS.gene37630:CDS 35.0%
!!! GGATAAAGTATTTTTGGGCA+TGG - chr5.3:70765186-70765205 None:intergenic 35.0%
AACAAACGAACCTGAACAGA+AGG - chr5.3:70763290-70763309 None:intergenic 40.0%
AACAATCGAACCTGAACAGA+AGG - chr5.3:70762437-70762456 None:intergenic 40.0%
AAGCGCAACAGTAACACAAA+TGG + chr5.3:70762894-70762913 MS.gene37630:CDS 40.0%
ACACTTTGTAGCTCAACTGA+AGG - chr5.3:70765325-70765344 None:intergenic 40.0%
AGATCCATACACGGAAAATC+AGG - chr5.3:70763638-70763657 None:intergenic 40.0%
CACTGCCATCTTAAACAACA+AGG + chr5.3:70765510-70765529 MS.gene37630:CDS 40.0%
CTGAACATGTTTGGCATCAA+TGG - chr5.3:70763971-70763990 None:intergenic 40.0%
CTGAACATGTTTGGCATCAT+TGG - chr5.3:70763024-70763043 None:intergenic 40.0%
GAACAACAACAGGAGAAAAC+TGG + chr5.3:70764685-70764704 MS.gene37630:CDS 40.0%
GGATTCTCACCATTAGGATA+AGG - chr5.3:70763895-70763914 None:intergenic 40.0%
GGGGATGAAAAAACATGGAA+AGG + chr5.3:70765099-70765118 MS.gene37630:CDS 40.0%
TCACCTTGTTCTTGGGTATT+TGG - chr5.3:70763101-70763120 None:intergenic 40.0%
TGGATAAAGCAACACCAACT+GGG - chr5.3:70765554-70765573 None:intergenic 40.0%
TTGGATAAAGCAACACCAAC+TGG - chr5.3:70765555-70765574 None:intergenic 40.0%
! AATGTTTCTGTGCCTAGTGT+TGG + chr5.3:70762392-70762411 MS.gene37630:CDS 40.0%
! ATTTGTGTTACTGTTGCGCT+TGG - chr5.3:70762895-70762914 None:intergenic 40.0%
! GGTGATGGCATCTTATTCTT+CGG - chr5.3:70762852-70762871 None:intergenic 40.0%
! TGGATATTTGGCCTTCCATT+TGG - chr5.3:70764036-70764055 None:intergenic 40.0%
! TTTAAGATGGCAGTGTCTTG+AGG - chr5.3:70765505-70765524 None:intergenic 40.0%
! TTTGCCTGATTTTCCGTGTA+TGG + chr5.3:70762783-70762802 MS.gene37630:intron 40.0%
! TTTGTGTTACTGTTGCGCTT+GGG - chr5.3:70762894-70762913 None:intergenic 40.0%
!! AAGATTCTAGCTTAACCCTG+TGG + chr5.3:70764162-70764181 MS.gene37630:intron 40.0%
!! AAGTGTTGATGTTCCTGTGT+TGG + chr5.3:70762301-70762320 MS.gene37630:CDS 40.0%
!! AATACCCAAAAAAGCACCAC+AGG - chr5.3:70764181-70764200 None:intergenic 40.0%
!! ATACCCAAAAAAGCACCACA+GGG - chr5.3:70764180-70764199 None:intergenic 40.0%
!! TCGTTTTGTTGCTGAACCAA+AGG - chr5.3:70765436-70765455 None:intergenic 40.0%
!!! TAACCCTGTGGTGCTTTTTT+GGG + chr5.3:70764174-70764193 MS.gene37630:intron 40.0%
!!! TCACATGGTCACCTTGTTTT+TGG - chr5.3:70764056-70764075 None:intergenic 40.0%
!!! TTAACCCTGTGGTGCTTTTT+TGG + chr5.3:70764173-70764192 MS.gene37630:intron 40.0%
AAAAACATGGAAAGGGACGC+TGG + chr5.3:70765107-70765126 MS.gene37630:CDS 45.0%
AAAGTCATGCCCCAAGGAAA+GGG + chr5.3:70764824-70764843 MS.gene37630:CDS 45.0%
ACCACCCGACTCAATGATAT+CGG - chr5.3:70764713-70764732 None:intergenic 45.0%
ACCTGAACAGAAGGAGCTAT+AGG - chr5.3:70762428-70762447 None:intergenic 45.0%
AGGCCAAATACCCAAGAACA+AGG + chr5.3:70763095-70763114 MS.gene37630:CDS 45.0%
ATTGGCAGCAAGCACAACAT+AGG - chr5.3:70765400-70765419 None:intergenic 45.0%
CAAAGTGTGATTCCTCCTCA+AGG + chr5.3:70765337-70765356 MS.gene37630:CDS 45.0%
CAAGGTGACCATGTGAATCA+TGG + chr5.3:70763113-70763132 MS.gene37630:CDS 45.0%
CACATGGTCACCTTGTTCTT+GGG - chr5.3:70763108-70763127 None:intergenic 45.0%
GCATAGCATGGAACAACAAC+AGG + chr5.3:70764675-70764694 MS.gene37630:CDS 45.0%
GCATGGCTAGCAATTTGAGT+TGG - chr5.3:70765169-70765188 None:intergenic 45.0%
GGAGTCTCATGTTGTTCCAT+AGG - chr5.3:70765481-70765500 None:intergenic 45.0%
GGATCCATACACGGAAAATC+AGG - chr5.3:70762790-70762809 None:intergenic 45.0%
GGATTCTCGCCATTAGGATA+AGG - chr5.3:70762948-70762967 None:intergenic 45.0%
GGCTTAGGATTCTCACCATT+AGG - chr5.3:70763901-70763920 None:intergenic 45.0%
GGTACCCTAGGACGAAAATT+CGG - chr5.3:70763823-70763842 None:intergenic 45.0%
GGTTCAGGACCTTATCCTAA+TGG + chr5.3:70763883-70763902 MS.gene37630:CDS 45.0%
GTGACCATGTGAATCATGGT+CGG + chr5.3:70763117-70763136 MS.gene37630:CDS 45.0%
GTGACGATGCCTTATCCTAA+TGG + chr5.3:70762936-70762955 MS.gene37630:CDS 45.0%
GTTTGAGCATCAGAAAGAGC+CGG - chr5.3:70762347-70762366 None:intergenic 45.0%
GTTTGAGCATCAGAAAGAGC+TGG - chr5.3:70762347-70762366 None:intergenic 45.0%
TATGCAGGAACAGCAATGTG+AGG - chr5.3:70763850-70763869 None:intergenic 45.0%
TCACATGGTCACCTTGTTCT+TGG - chr5.3:70763109-70763128 None:intergenic 45.0%
TCCATAGGAGCAGTGACTAA+AGG - chr5.3:70765466-70765485 None:intergenic 45.0%
TCCTATAGCTCCTTCTGTTC+AGG + chr5.3:70762424-70762443 MS.gene37630:CDS 45.0%
TCCTTTAGTCACTGCTCCTA+TGG + chr5.3:70765462-70765481 MS.gene37630:CDS 45.0%
TGACAACTTGCAAACCCAGT+TGG + chr5.3:70765537-70765556 MS.gene37630:CDS 45.0%
TGAGAAGATGCGCAACTTGT+TGG + chr5.3:70765606-70765625 MS.gene37630:CDS 45.0%
TGTGTCTGTTGCATTCCTTG+AGG - chr5.3:70765355-70765374 None:intergenic 45.0%
TGTTCCATGCTATGCTCAGA+GGG - chr5.3:70764670-70764689 None:intergenic 45.0%
TTAGGATAAGGTCCTGAACC+AGG - chr5.3:70763883-70763902 None:intergenic 45.0%
TTGGTTCCAACAACCAACAC+AGG - chr5.3:70762317-70762336 None:intergenic 45.0%
TTGTTCCATGCTATGCTCAG+AGG - chr5.3:70764671-70764690 None:intergenic 45.0%
! ATGTTGTGCTTGCTGCCAAT+CGG + chr5.3:70765400-70765419 MS.gene37630:CDS 45.0%
! CATTTGTGTTGTTGCGCTTG+GGG - chr5.3:70763744-70763763 None:intergenic 45.0%
! CCATTTGTGTTGTTGCGCTT+GGG - chr5.3:70763745-70763764 None:intergenic 45.0%
! GCGAGTCGACAAATCTGTTT+TGG + chr5.3:70762677-70762696 MS.gene37630:intron 45.0%
! TCAGGAAGTGTAGAACCGAT+TGG - chr5.3:70765574-70765593 None:intergenic 45.0%
! TGCTCCGAATTTTCGTCCTA+GGG + chr5.3:70763816-70763835 MS.gene37630:CDS 45.0%
! TGGGTATTTGGCCTTCCATT+TGG - chr5.3:70763089-70763108 None:intergenic 45.0%
! TTGCTCCGAATTTTCGTCCT+AGG + chr5.3:70763815-70763834 MS.gene37630:CDS 45.0%
!! AACACAGGAGCATCAACACT+AGG - chr5.3:70763155-70763174 None:intergenic 45.0%
!! GATGTTCCTGTGTTGGTTGT+TGG + chr5.3:70762308-70762327 MS.gene37630:CDS 45.0%
!! TAGTGTTGATGCTCCTGTGT+TGG + chr5.3:70763154-70763173 MS.gene37630:CDS 45.0%
!! TGGCACCGATATCATTGAGT+CGG + chr5.3:70764705-70764724 MS.gene37630:CDS 45.0%
AAGATGGCAGTGTCTTGAGG+AGG - chr5.3:70765502-70765521 None:intergenic 50.0%
ACCGATATCATTGAGTCGGG+TGG + chr5.3:70764709-70764728 MS.gene37630:CDS 50.0%
AGAAAGAGCTGGCGAAGACT+TGG - chr5.3:70762336-70762355 None:intergenic 50.0%
AGATCCCTCTGAGCATAGCA+TGG + chr5.3:70764663-70764682 MS.gene37630:CDS 50.0%
ATCGTCACCACAGGAAAGTG+AGG - chr5.3:70762924-70762943 None:intergenic 50.0%
CAGAAGAAAGTCATGCCCCA+AGG + chr5.3:70764818-70764837 MS.gene37630:CDS 50.0%
CCCAAGCGCAACAACACAAA+TGG + chr5.3:70763742-70763761 MS.gene37630:CDS 50.0%
CGAAAATTCGGAGCAACAGG+CGG - chr5.3:70763811-70763830 None:intergenic 50.0%
CTGTCCAATGCCCTTTCCTT+GGG - chr5.3:70764837-70764856 None:intergenic 50.0%
CTTGGGGCATGACTTTCTTC+TGG - chr5.3:70764820-70764839 None:intergenic 50.0%
GAAAGTCATGCCCCAAGGAA+AGG + chr5.3:70764823-70764842 MS.gene37630:CDS 50.0%
GAATCCTAAGCCTGTATCCC+CGG + chr5.3:70762962-70762981 MS.gene37630:CDS 50.0%
GAGTAAACCGGGTGATGCTA+GGG + chr5.3:70764450-70764469 MS.gene37630:intron 50.0%
GATAAGGTCCTGAACCAGGT+GGG - chr5.3:70763879-70763898 None:intergenic 50.0%
GATGCCGACCATGATTCACA+TGG - chr5.3:70763124-70763143 None:intergenic 50.0%
GGACGAAAATTCGGAGCAAC+AGG - chr5.3:70763814-70763833 None:intergenic 50.0%
GGCTTAGGATTCTCGCCATT+AGG - chr5.3:70762954-70762973 None:intergenic 50.0%
GGCTTTCGATAGCATGGTGA+TGG - chr5.3:70763718-70763737 None:intergenic 50.0%
GTCTGTTGCATTCCTTGAGG+AGG - chr5.3:70765352-70765371 None:intergenic 50.0%
TATGCTTTCCCACCTGGTTC+AGG + chr5.3:70763868-70763887 MS.gene37630:CDS 50.0%
TCACCATGCTATCGAAAGCC+AGG + chr5.3:70763718-70763737 MS.gene37630:CDS 50.0%
TCTGTCCAATGCCCTTTCCT+TGG - chr5.3:70764838-70764857 None:intergenic 50.0%
TCTTAGTCCCTAGCATCACC+CGG - chr5.3:70764460-70764479 None:intergenic 50.0%
TGAGTAAACCGGGTGATGCT+AGG + chr5.3:70764449-70764468 MS.gene37630:intron 50.0%
TGCCAAACATGTTCAGCCTC+CGG + chr5.3:70763028-70763047 MS.gene37630:CDS 50.0%
TGCTATGCTCAGAGGGATCT+TGG - chr5.3:70764663-70764682 None:intergenic 50.0%
TGTCCAATGCCCTTTCCTTG+GGG - chr5.3:70764836-70764855 None:intergenic 50.0%
TGTTGGAACCAAGTCTTCGC+CGG + chr5.3:70762325-70762344 MS.gene37630:CDS 50.0%
TTGGCATCAATGGCATGAGC+AGG - chr5.3:70763961-70763980 None:intergenic 50.0%
TTGGCATCATTGGCATGAGC+AGG - chr5.3:70763014-70763033 None:intergenic 50.0%
! GCCATTTGTGTTGTTGCGCT+TGG - chr5.3:70763746-70763765 None:intergenic 50.0%
!! AAGGAAAGGGCATTGGACAG+AGG + chr5.3:70764837-70764856 MS.gene37630:CDS 50.0%
!! GATGCTCCTGTGTTGGTTGT+TGG + chr5.3:70763161-70763180 MS.gene37630:CDS 50.0%
!! GGCACCGATATCATTGAGTC+GGG + chr5.3:70764706-70764725 MS.gene37630:CDS 50.0%
!! TTCTGTGCCTAGTGTTGGTC+AGG + chr5.3:70762397-70762416 MS.gene37630:CDS 50.0%
AAACCTTGTCCTGCTGCAGC+CGG - chr5.3:70763931-70763950 None:intergenic 55.0%
AAACCTTGTCCTGCTGCTGC+CGG - chr5.3:70762984-70763003 None:intergenic 55.0%
ACAGGCGGCTGCTGATGATA+AGG - chr5.3:70763796-70763815 None:intergenic 55.0%
AGAAAGAGCCGGCGAAGACT+TGG - chr5.3:70763189-70763208 None:intergenic 55.0%
CACCGGAGGCTGAACATGTT+TGG - chr5.3:70763033-70763052 None:intergenic 55.0%
CCTGCATATGCTTTCCCACC+TGG + chr5.3:70763862-70763881 MS.gene37630:CDS 55.0%
GAGGGATCTTGGACTGAAGC+CGG - chr5.3:70764652-70764671 None:intergenic 55.0%
GCAGGAACAGCAATGTGAGG+TGG - chr5.3:70763847-70763866 None:intergenic 55.0%
GCATCAATGGCATGAGCAGG+TGG - chr5.3:70763958-70763977 None:intergenic 55.0%
GCATCATTGGCATGAGCAGG+TGG - chr5.3:70763011-70763030 None:intergenic 55.0%
GCATTCGGATCTCCTTGCAC+CGG - chr5.3:70763050-70763069 None:intergenic 55.0%
GGAACAGCAATGTGAGGTGG+AGG - chr5.3:70763844-70763863 None:intergenic 55.0%
GGAGCAACCTGACCAACACT+AGG - chr5.3:70762407-70762426 None:intergenic 55.0%
GGATAAGGTCCTGAACCAGG+TGG - chr5.3:70763880-70763899 None:intergenic 55.0%
GGATCAGAGGTGGAAAGCAG+AGG + chr5.3:70762276-70762295 MS.gene37630:CDS 55.0%
TGGCACGCTTCACTTTCCTG+TGG + chr5.3:70763762-70763781 MS.gene37630:CDS 55.0%
TGGCATGCCTCACTTTCCTG+TGG + chr5.3:70762914-70762933 MS.gene37630:CDS 55.0%
TTACTGTTGCGCTTGGGACC+TGG - chr5.3:70762888-70762907 None:intergenic 55.0%
TTCACTTTCCTGTGGCGACG+AGG + chr5.3:70763770-70763789 MS.gene37630:CDS 55.0%
! ATGCCCCAAGGAAAGGGCAT+TGG + chr5.3:70764830-70764849 MS.gene37630:CDS 55.0%
! CCAGGTGGGAAAGCATATGC+AGG - chr5.3:70763865-70763884 None:intergenic 55.0%
!! ATGTGAGGTGGAGGTACCCT+AGG - chr5.3:70763835-70763854 None:intergenic 55.0%
!! GGATAAGGCATCGTCACCAC+AGG - chr5.3:70762933-70762952 None:intergenic 55.0%
AACCTTGTCCTGCTGCAGCC+GGG - chr5.3:70763930-70763949 None:intergenic 60.0%
AACCTTGTCCTGCTGCTGCC+GGG - chr5.3:70762983-70763002 None:intergenic 60.0%
CATGTTCAGCCTCCGGTGCA+AGG + chr5.3:70763035-70763054 MS.gene37630:CDS 60.0%
GGCTTTCGATAGCGCGGTGA+TGG - chr5.3:70762867-70762886 None:intergenic 60.0%
TCACCGCGCTATCGAAAGCC+AGG + chr5.3:70762867-70762886 MS.gene37630:CDS 60.0%
TGATAAGGCCTCGTCGCCAC+AGG - chr5.3:70763781-70763800 None:intergenic 60.0%
TTCGGATCTCCTTGCACCGG+AGG - chr5.3:70763047-70763066 None:intergenic 60.0%
! GGACCTGGCTTTCGATAGCG+CGG - chr5.3:70762873-70762892 None:intergenic 60.0%
! GGGCCTGGCTTTCGATAGCA+TGG - chr5.3:70763724-70763743 None:intergenic 60.0%
ACCTTGTCCTGCTGCAGCCG+GGG - chr5.3:70763929-70763948 None:intergenic 65.0%
ACCTTGTCCTGCTGCTGCCG+GGG - chr5.3:70762982-70763001 None:intergenic 65.0%
GCAGCCGGGGATACAGGCTT+AGG - chr5.3:70763916-70763935 None:intergenic 65.0%
GCTGCCGGGGATACAGGCTT+AGG - chr5.3:70762969-70762988 None:intergenic 65.0%
! GTGTTGTTGCGCTTGGGGCC+TGG - chr5.3:70763739-70763758 None:intergenic 65.0%
CCTGCTGCAGCCGGGGATAC+AGG - chr5.3:70763922-70763941 None:intergenic 70.0%
CCTGCTGCTGCCGGGGATAC+AGG - chr5.3:70762975-70762994 None:intergenic 70.0%
CCTGTATCCCCGGCAGCAGC+AGG + chr5.3:70762972-70762991 MS.gene37630:CDS 70.0%
CCTGTATCCCCGGCTGCAGC+AGG + chr5.3:70763919-70763938 MS.gene37630:CDS 70.0%
TCCCCGGCAGCAGCAGGACA+AGG + chr5.3:70762978-70762997 MS.gene37630:CDS 70.0%
TCCCCGGCTGCAGCAGGACA+AGG + chr5.3:70763925-70763944 MS.gene37630:CDS 70.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 70762269 70765642 70762269 ID=MS.gene37630
chr5.3 mRNA 70762269 70765642 70762269 ID=MS.gene37630.t1;Parent=MS.gene37630
chr5.3 exon 70762269 70762445 70762269 ID=MS.gene37630.t1.exon1;Parent=MS.gene37630.t1
chr5.3 CDS 70762269 70762445 70762269 ID=cds.MS.gene37630.t1;Parent=MS.gene37630.t1
chr5.3 exon 70762822 70763298 70762822 ID=MS.gene37630.t1.exon2;Parent=MS.gene37630.t1
chr5.3 CDS 70762822 70763298 70762822 ID=cds.MS.gene37630.t1;Parent=MS.gene37630.t1
chr5.3 exon 70763670 70764063 70763670 ID=MS.gene37630.t1.exon3;Parent=MS.gene37630.t1
chr5.3 CDS 70763670 70764063 70763670 ID=cds.MS.gene37630.t1;Parent=MS.gene37630.t1
chr5.3 exon 70764590 70764869 70764590 ID=MS.gene37630.t1.exon4;Parent=MS.gene37630.t1
chr5.3 CDS 70764590 70764869 70764590 ID=cds.MS.gene37630.t1;Parent=MS.gene37630.t1
chr5.3 exon 70765087 70765642 70765087 ID=MS.gene37630.t1.exon5;Parent=MS.gene37630.t1
chr5.3 CDS 70765087 70765642 70765087 ID=cds.MS.gene37630.t1;Parent=MS.gene37630.t1
Gene Sequence

>MS.gene37630

ATGGTGAGGATCAGAGGTGGAAAGCAGAGGAAAAGTGTTGATGTTCCTGTGTTGGTTGTTGGAACCAAGTCTTCGCCAGCTCTTTCTGATGCTCAAACTCCAAAACCTATGAATCATGTTGAGAATGTTTCTGTGCCTAGTGTTGGTCAGGTTGCTCCTATAGCTCCTTCTGTTCAGGTTCGATTGTTCTTTACTGTAATTTGATAGCATTGTCGTTTGAGAATGAAATGCAAAAGATCATGTTAGTGTAATGTGATTTTGATGGAGTTTTTTTGTTGAGATAAACATGTTTTGTATTGATCTATTTTTCATGATTTTAGCCATATTATTGCAAGCATAAGAGTTGATTTTGATAGAGTAACAATTAAAATATGATGTGTTAGAATTAAACAATGAGTGAAAAATATGGCGAGTCGACAAATCTGTTTTGGACATATTGTTTTTTATCCCTTCGATGGAAATAAAAGCTGTATTCTACAATATTCTTAACTCTGGGTTTGACTATCTTTTCGTGTTTGCCTGATTTTCCGTGTATGGATCCGTGATTAAACAGAAATCAAACGGTTCTGGAAACTTCAATCCGAAGAATAAGATGCCATCACCGCGCTATCGAAAGCCAGGTCCCAAGCGCAACAGTAACACAAATGGCATGCCTCACTTTCCTGTGGTGACGATGCCTTATCCTAATGGCGAGAATCCTAAGCCTGTATCCCCGGCAGCAGCAGGACAAGGTTTTACTCCACCTGCTCATGCCAATGATGCCAAACATGTTCAGCCTCCGGTGCAAGGAGATCCGAATGCTTATGCTGTTAATTATCCAAATGGAAGGCCAAATACCCAAGAACAAGGTGACCATGTGAATCATGGTCGGCATCATCAAAGACCTAGTGTTGATGCTCCTGTGTTGGTTGTTGGAACCAAGTCTTCGCCGGCTCTTTCTGATGCTCAAACTCCAAAACCTATGAATCATGTTGAGAATGTTTCTGTGCCTAGTGTTGGTCAGGTTGCTCCTATAGCTCCTTCTGTTCAGGTTCGTTTGTTCTTTATTGTAATTTGATAGCATTGTCGTTTGAGAATGAAATGCAAAAGATCATGTTAGAGTAATGTGATTTTGATGGAGTTTTTTTGTTAAGATAAACATGATTTGTATTGATCTATTTTTCATGATTTAGCCATATTATTGCAAGCATAAGAATTGTATTATTGAGTAATAATTAAAATATGACGTGTTAGAATTAAACAACGAGTCAAAAATATTGGAGTCGACAAATTTATTTAGGACATATTGTTTTTTTCCCTTCAATGGAAATAAAAGCTGTATTCTACAATATTTTTAACTCTGGGTTTGACTATTTTTTCGTGTTTGCCTGATTTTCCGTGTATGGATCTGTGATTAAATAGAAGAAATCAAACGGTTCTGGAAATTTCAATCGGATGAATAAGCTGCCATCACCATGCTATCGAAAGCCAGGCCCCAAGCGCAACAACACAAATGGCACGCTTCACTTTCCTGTGGCGACGAGGCCTTATCATCAGCAGCCGCCTGTTGCTCCGAATTTTCGTCCTAGGGTACCTCCACCTCACATTGCTGTTCCTGCATATGCTTTCCCACCTGGTTCAGGACCTTATCCTAATGGTGAGAATCCTAAGCCTGTATCCCCGGCTGCAGCAGGACAAGGTTTTACTCCACCTGCTCATGCCATTGATGCCAAACATGTTCAGCCTCCGGTGCAAGGAGATCCGAATGCTTATGCTATTGATTATCCAAATGGAAGGCCAAATATCCAAAAACAAGGTGACCATGTGAATGAACTTCATTGACTTTATGTAGTGACTTTTTTGTTACTGTTACTGTTTTTGAAGATTTTAGCCTCGTTTTCTTGGTTAAGTTTCAAGATTCTAGCTTAACCCTGTGGTGCTTTTTTGGGTATTGTTTTCCTGATCTTGTCTTTTATATGATTAATATAACTAATCTTCAATATTCTTACTTTGATACCATTGAAGTGGATTTTAGTTGCAACATGATGTTTTACGATGAGTGTTTTTTATTGTCATTATGATATCTTCTTGTTATGGTTCTGTAATTGGTTTGAGTAATTGGCCAAGTAATTTTCTTAACTTTCATGATTGGCTAGTTCATCTGATTAAGGCATAATTGATTTGATTAAGGCATCATTTTTTGAGTAAACCGGGTGATGCTAGGGACTAAGAATTAAGAAGATTTAGCATATTTTTACCATTCAAAAAATATTATGCATGTGGATATAATTCAAATTGGATGAAATTGGTTTTGAATTCTTATAGTTGTATTTTTTGTATAGAAAGCATGGAAGAAAGAAAATGTATACAATCATCCCTCCTTCAAATTGATTTAAATGAGCCGGCTTCAGTCCAAGATCCCTCTGAGCATAGCATGGAACAACAACAGGAGAAAACTGGCACCGATATCATTGAGTCGGGTGGTGCCATTGCAATTCTAAACTCTGATGATAATAACGTCACAACTCTAAACTCTGATGAAAATAACTTAATTCAAGCTGAGTCAGTACCAGAAGAAAGTCATGCCCCAAGGAAAGGGCATTGGACAGAGGATGAACACAAGTAAGTATGCAGTCTATGTTAATGTTAACCTATGTTTGAAAGTTATTTTTTTTATTTTATTGAGTTAAATATGTGTTTAGTTCTTATTAAATTACAGATTTTAACATCTATAAAATTATTCTGTTTTTTGACAATTGTTTTCATTTTATCTTTTATACAATTGTTTTCATATTATTTAGTTGAATTTGAATATTTCACATTCATTCTCTATATATAGGTTGTTTTTGAAGGGGATGAAAAAACATGGAAAGGGACGCTGGAAAAATATTTCAAAAGAATTTGTGGTGACAAAAACTCCAACTCAAATTGCTAGCCATGCCCAAAAATACTTTATCCACCAAAATGTGAAAGATATGGAGAAGAAGGAGAAAAAGAGAAAAAGGATTCACGACACAACATTAAACAAGAATGACACATTGGTCACTGTCGCTGTTGATCAAGAAGATGAGATTCCTTCAGTTGAGCTACAAAGTGTGATTCCTCCTCAAGGAATGCAACAGACACAAACACAACAGAATGAGATTTCTCCTATGTTGTGCTTGCTGCCAATCGGTTCTACAATTCCTTTGGTTCAGCAACAAAACGAGCTTACTCCTTTAGTCACTGCTCCTATGGAACAACATGAGACTCCTCCTCAAGACACTGCCATCTTAAACAACAAGGACAATGACAACTTGCAAACCCAGTTGGTGTTGCTTTATCCAATCGGTTCTACACTTCCTGATATGAACAAACTTGAGAAGATGCGCAACTTGTTGGCAAAAGAACTTTGA
Protein sequence

>MS.gene37630.t1

MVRIRGGKQRKSVDVPVLVVGTKSSPALSDAQTPKPMNHVENVSVPSVGQVAPIAPSVQKSNGSGNFNPKNKMPSPRYRKPGPKRNSNTNGMPHFPVVTMPYPNGENPKPVSPAAAGQGFTPPAHANDAKHVQPPVQGDPNAYAVNYPNGRPNTQEQGDHVNHGRHHQRPSVDAPVLVVGTKSSPALSDAQTPKPMNHVENVSVPSVGQVAPIAPSVQKKSNGSGNFNRMNKLPSPCYRKPGPKRNNTNGTLHFPVATRPYHQQPPVAPNFRPRVPPPHIAVPAYAFPPGSGPYPNGENPKPVSPAAAGQGFTPPAHAIDAKHVQPPVQGDPNAYAIDYPNGRPNIQKQESMEERKCIQSSLLQIDLNEPASVQDPSEHSMEQQQEKTGTDIIESGGAIAILNSDDNNVTTLNSDENNLIQAESVPEESHAPRKGHWTEDEHKLFLKGMKKHGKGRWKNISKEFVVTKTPTQIASHAQKYFIHQNVKDMEKKEKKRKRIHDTTLNKNDTLVTVAVDQEDEIPSVELQSVIPPQGMQQTQTQQNEISPMLCLLPIGSTIPLVQQQNELTPLVTAPMEQHETPPQDTAILNNKDNDNLQTQLVLLYPIGSTLPDMNKLEKMRNLLAKEL