AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37701

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37701.t1 MTR_1g102860 93.333 330 18 1 1 326 1 330 0.0 630
MS.gene37701.t1 MTR_7g095680 52.381 336 129 6 17 323 26 359 1.61e-106 315
MS.gene37701.t1 MTR_3g104550 62.963 216 73 4 27 240 33 243 3.79e-90 274
MS.gene37701.t1 MTR_5g029680 56.769 229 86 4 27 245 19 244 1.42e-80 253
MS.gene37701.t1 MTR_1g071360 59.391 197 68 3 23 218 15 200 6.72e-75 234
MS.gene37701.t1 MTR_1g071360 59.391 197 68 3 23 218 12 197 9.92e-75 234
MS.gene37701.t1 MTR_4g077970 59.278 194 70 3 39 224 11 203 1.23e-70 228
MS.gene37701.t1 MTR_1g061170 53.659 205 93 2 27 231 36 238 2.76e-69 223
MS.gene37701.t1 MTR_8g087540 37.716 289 160 5 39 318 11 288 3.86e-55 185
MS.gene37701.t1 MTR_8g105780 50.500 200 85 6 40 227 22 219 2.13e-52 177
MS.gene37701.t1 MTR_6g086805 43.627 204 108 3 40 243 11 207 1.59e-51 174
MS.gene37701.t1 MTR_2g100670 44.737 190 96 2 34 220 27 210 3.83e-51 172
MS.gene37701.t1 MTR_2g100670 44.737 190 96 2 34 220 135 318 3.86e-50 172
MS.gene37701.t1 MTR_6g043060 46.809 188 89 4 40 224 22 201 6.70e-49 166
MS.gene37701.t1 MTR_2g100680 40.271 221 118 4 25 240 14 225 7.61e-49 169
MS.gene37701.t1 MTR_8g083100 44.554 202 100 5 41 239 23 215 1.48e-46 164
MS.gene37701.t1 MTR_2g017890 41.799 189 104 2 31 214 6 193 1.49e-43 154
MS.gene37701.t1 MTR_3g101870 65.049 103 36 0 34 136 18 120 3.41e-41 147
MS.gene37701.t1 MTR_5g089170 71.579 95 27 0 38 132 23 117 1.23e-40 143
MS.gene37701.t1 MTR_5g010680 64.894 94 33 0 38 131 22 115 8.84e-38 138
MS.gene37701.t1 MTR_0020s0020 62.766 94 35 0 38 131 31 124 3.57e-37 136
MS.gene37701.t1 MTR_1g100777 62.766 94 35 0 38 131 16 109 3.88e-37 135
MS.gene37701.t1 MTR_7g091370 52.941 119 49 2 31 142 9 127 1.05e-35 129
MS.gene37701.t1 MTR_5g017470 60.417 96 38 0 37 132 6 101 6.03e-35 129
MS.gene37701.t1 MTR_4g088900 42.945 163 84 3 38 193 31 191 5.46e-33 121
MS.gene37701.t1 MTR_1g061170 45.185 135 72 2 97 231 11 143 2.03e-30 118
MS.gene37701.t1 MTR_4g045757 61.194 67 26 0 31 97 5 71 7.36e-21 85.5
MS.gene37701.t1 MTR_2g043940 34.965 143 72 5 80 214 11 140 1.48e-15 77.0
MS.gene37701.t1 MTR_5g047190 41.304 92 47 2 48 132 1 92 1.35e-14 68.9
MS.gene37701.t1 MTR_6g044340 28.846 156 100 4 92 244 14 161 2.83e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37701.t1 AT3G22830 51.524 361 115 6 22 323 43 402 1.15e-116 343
MS.gene37701.t1 AT2G26150 43.210 324 149 6 27 324 31 345 6.60e-85 259
MS.gene37701.t1 AT2G26150 43.210 324 149 6 27 324 31 345 6.60e-85 259
MS.gene37701.t1 AT3G51910 56.872 211 76 3 31 240 20 216 1.49e-79 243
MS.gene37701.t1 AT4G17750 54.741 232 80 5 16 224 22 251 1.39e-76 243
MS.gene37701.t1 AT1G32330 52.521 238 99 3 16 240 11 247 1.90e-75 239
MS.gene37701.t1 AT5G16820 57.143 217 84 3 36 244 23 238 2.16e-75 239
MS.gene37701.t1 AT5G16820 57.143 217 84 3 36 244 23 238 2.16e-75 239
MS.gene37701.t1 AT1G32330 52.521 238 99 3 16 240 11 247 2.41e-75 239
MS.gene37701.t1 AT5G43840 57.216 194 70 1 27 220 6 186 2.94e-74 230
MS.gene37701.t1 AT3G63350 51.818 220 87 3 18 229 6 214 2.76e-73 228
MS.gene37701.t1 AT3G02990 57.895 209 78 4 39 240 22 227 8.87e-72 230
MS.gene37701.t1 AT5G03720 49.275 207 104 1 14 220 29 234 1.09e-63 207
MS.gene37701.t1 AT5G03720 49.275 207 104 1 14 220 29 234 1.09e-63 207
MS.gene37701.t1 AT1G67970 48.837 215 101 5 40 248 19 230 2.58e-58 192
MS.gene37701.t1 AT3G24520 44.059 202 91 3 40 241 17 196 1.36e-50 171
MS.gene37701.t1 AT5G54070 40.708 226 122 4 33 254 63 280 7.25e-48 164
MS.gene37701.t1 AT4G13980 43.784 185 101 1 41 225 24 205 2.61e-47 166
MS.gene37701.t1 AT2G41690 39.216 204 107 4 13 209 23 216 3.20e-41 144
MS.gene37701.t1 AT1G46264 64.423 104 37 0 31 134 25 128 6.86e-41 146
MS.gene37701.t1 AT5G45710 41.624 197 110 3 39 232 12 206 7.14e-41 146
MS.gene37701.t1 AT5G45710 41.624 197 110 3 39 232 12 206 7.14e-41 146
MS.gene37701.t1 AT4G18880 44.792 192 102 2 32 220 7 197 1.23e-40 147
MS.gene37701.t1 AT4G11660 60.825 97 38 0 38 134 57 153 6.99e-38 139
MS.gene37701.t1 AT2G26150 35.714 252 125 8 100 324 49 290 1.55e-37 135
MS.gene37701.t1 AT2G26150 35.714 252 125 8 100 324 49 290 1.55e-37 135
MS.gene37701.t1 AT4G36990 54.464 112 47 1 38 149 12 119 3.85e-36 132
MS.gene37701.t1 AT5G62020 61.702 94 36 0 38 131 21 114 1.11e-35 131
MS.gene37701.t1 AT4G18870 37.097 124 75 1 29 149 135 258 7.04e-21 91.3
MS.gene37701.t1 AT4G18870 48.315 89 41 2 41 127 14 99 1.18e-19 87.8
MS.gene37701.t1 AT4G19630 39.623 106 52 4 36 131 7 110 1.98e-13 67.0
MS.gene37701.t1 AT1G77570 37.778 90 53 2 41 127 27 116 4.47e-12 63.5

Find 68 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATCAAAGCTTCCTATTT+AGG 0.148117 1.1:+73816399 None:intergenic
ACTAACTGTTGCAAGAAATT+AGG 0.251206 1.1:+73816732 None:intergenic
GGAACAATAGCTTTGTTGTT+TGG 0.274853 1.1:-73817916 MS.gene37701:CDS
TAAGAGATATTGAAGTGTTT+TGG 0.285980 1.1:-73816515 MS.gene37701:CDS
TAAATTGTAGGGGTTTAAAA+AGG 0.303820 1.1:-73817084 MS.gene37701:intron
TTCAAGTTGATTAATTTGAT+TGG 0.327468 1.1:+73816539 None:intergenic
GTTGATGCAGATGTTGAATT+AGG 0.327469 1.1:-73816627 MS.gene37701:CDS
GAACAATAGCTTTGTTGTTT+GGG 0.327590 1.1:-73817915 MS.gene37701:CDS
CCACAAATCATATAGTTTCA+TGG 0.352549 1.1:-73817946 MS.gene37701:CDS
TGCCTCTAGTCCTCCTAAAT+AGG 0.370362 1.1:-73816412 None:intergenic
ATTAAGTTGCCGGACAAAAC+TGG 0.370804 1.1:+73817835 None:intergenic
TTGTTGTGCTTGAAGAATCT+AGG 0.383883 1.1:+73817863 None:intergenic
TGTGTTGAGCTGGGAAGGTT+TGG 0.384498 1.1:-73816939 MS.gene37701:CDS
CATATAGTTTCATGGAGTAC+TGG 0.392040 1.1:-73817938 MS.gene37701:CDS
AAAACAGATGATGAATTTCA+TGG 0.398561 1.1:-73816772 MS.gene37701:CDS
GGAATGGAGAAAAGAGTTAG+AGG 0.408095 1.1:-73816700 MS.gene37701:CDS
TTCTTCTAATGTTCTTCAAA+AGG 0.412252 1.1:+73817006 None:intergenic
CCATGAAACTATATGATTTG+TGG 0.413159 1.1:+73817946 None:intergenic
AGGGAAGGACTTCATGAAAA+TGG 0.418874 1.1:-73818016 MS.gene37701:CDS
CTTGTCTGTCGTGCCTCAAC+CGG 0.419387 1.1:+73816895 None:intergenic
TCACATAGGTATTAAGTTGC+CGG 0.435323 1.1:+73817825 None:intergenic
TGAAGTCCTTCCCTTGGTTG+AGG 0.441996 1.1:+73818025 None:intergenic
ACATCTGCATCAACATTACT+AGG 0.447700 1.1:+73816636 None:intergenic
TATTGAAGATGTTGATGTAT+TGG 0.457804 1.1:-73816454 MS.gene37701:CDS
GCTAATGAGATGTTTCTAAG+AGG 0.461550 1.1:-73817038 MS.gene37701:CDS
GGGATGAAGGAGGAGTTTGT+TGG 0.463474 1.1:-73818079 MS.gene37701:CDS
TTGGCAAAATTTGTTTAAGG+AGG 0.466444 1.1:-73816496 MS.gene37701:CDS
ATCTTGAAGCAATGGAAAGA+AGG 0.466935 1.1:-73816818 MS.gene37701:CDS
ATGAATATGAATCTTCATCA+TGG 0.483530 1.1:-73818103 MS.gene37701:CDS
CGTCATGTGTTGAGCTGGGA+AGG 0.490133 1.1:-73816944 MS.gene37701:CDS
GAATCGAAGTGGACCGGTTG+AGG 0.492898 1.1:-73816908 MS.gene37701:CDS
AAAGGTTGATGCAGATAGGT+GGG 0.494489 1.1:-73817066 MS.gene37701:CDS
AGACCCGTCATGTGTTGAGC+TGG 0.495058 1.1:-73816949 MS.gene37701:CDS
AGTAGGAGAACTATTGATGA+AGG 0.495380 1.1:-73816660 MS.gene37701:CDS
ATGAAGGAGGAGTTTGTTGG+AGG 0.495698 1.1:-73818076 MS.gene37701:CDS
AGTTAGTTCAGCAGAAGGAA+TGG 0.496467 1.1:-73816716 MS.gene37701:CDS
GCACGACAGACAAGTTCTAA+TGG 0.503589 1.1:-73816886 MS.gene37701:CDS
AGGTTCACCAACCACAGAAA+AGG 0.504219 1.1:+73818045 None:intergenic
AGGGAGAAGAATAATAGAAA+AGG 0.505225 1.1:+73817883 None:intergenic
TGTTGTGCTTGAAGAATCTA+GGG 0.511168 1.1:+73817864 None:intergenic
TCTTCATCATGGTGGGATGA+AGG 0.511768 1.1:-73818092 MS.gene37701:CDS
TGGCAAAATTTGTTTAAGGA+GGG 0.516361 1.1:-73816495 MS.gene37701:CDS
ATCAAAGCTTCCTATTTAGG+AGG 0.518160 1.1:+73816402 None:intergenic
ACAAGTTCTAATGGTTGAGT+TGG 0.523658 1.1:-73816877 MS.gene37701:CDS
CTGGGAAGGTTTGGATTAGA+CGG 0.525469 1.1:-73816930 MS.gene37701:CDS
TAGAACTCATCTTGAAGCAA+TGG 0.536822 1.1:-73816826 MS.gene37701:CDS
AAAAGGTTGATGCAGATAGG+TGG 0.546223 1.1:-73817067 MS.gene37701:CDS
TTCCCAGCTCAACACATGAC+GGG 0.552361 1.1:+73816946 None:intergenic
GATGATGAATTTCATGGCAA+GGG 0.556515 1.1:-73816766 MS.gene37701:CDS
ATATAGTTTCATGGAGTACT+GGG 0.559738 1.1:-73817937 MS.gene37701:CDS
GACCCGTCATGTGTTGAGCT+GGG 0.564277 1.1:-73816948 MS.gene37701:CDS
TTCCTATTTAGGAGGACTAG+AGG 0.567154 1.1:+73816410 None:intergenic
AGATGATGAATTTCATGGCA+AGG 0.575521 1.1:-73816767 MS.gene37701:CDS
CTTCCCAGCTCAACACATGA+CGG 0.580827 1.1:+73816945 None:intergenic
GCAACAGTTAGTTCAGCAGA+AGG 0.585939 1.1:-73816721 MS.gene37701:CDS
TGAACAACATCAAGATGTTG+AGG 0.592174 1.1:-73816568 MS.gene37701:CDS
AGAATAATAGAAAAGGCTTG+AGG 0.598445 1.1:+73817890 None:intergenic
TGGATTAGACGGAATCGAAG+TGG 0.602364 1.1:-73816919 MS.gene37701:CDS
GATGTATTGGCTGAGCAACT+TGG 0.605475 1.1:-73816441 MS.gene37701:CDS
AATATGAATCTTCATCATGG+TGG 0.612258 1.1:-73818100 MS.gene37701:CDS
TAGACGGAATCGAAGTGGAC+CGG 0.614296 1.1:-73816914 MS.gene37701:CDS
GTAGGAGAACTATTGATGAA+GGG 0.620611 1.1:-73816659 MS.gene37701:CDS
GAAACTATATGATTTGTGGA+AGG 0.623337 1.1:+73817950 None:intergenic
ATATGAATCTTCATCATGGT+GGG 0.643772 1.1:-73818099 MS.gene37701:CDS
TCATCATGGTGGGATGAAGG+AGG 0.650270 1.1:-73818089 MS.gene37701:CDS
GGTGAACCTCAACCAAGGGA+AGG 0.659511 1.1:-73818031 MS.gene37701:CDS
TGGTTGGTGAACCTCAACCA+AGG 0.664718 1.1:-73818036 MS.gene37701:CDS
GGTTGGTGAACCTCAACCAA+GGG 0.679182 1.1:-73818035 MS.gene37701:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTGAAATTAAATTGTA+GGG - chr1.1:73817421-73817440 MS.gene37701:intron 10.0%
!!! AACATTTTTGTTTCATTATA+TGG - chr1.1:73816845-73816864 MS.gene37701:CDS 15.0%
!!! AATTTGAAATTAAATTGTAG+GGG - chr1.1:73817422-73817441 MS.gene37701:intron 15.0%
!!! GAAATTTGAAATTAAATTGT+AGG - chr1.1:73817420-73817439 MS.gene37701:intron 15.0%
!! AAACAAACACTAATTAACAT+TGG + chr1.1:73817354-73817373 None:intergenic 20.0%
!! AGTTGAAATATAAAAGTCTT+AGG - chr1.1:73816913-73816932 MS.gene37701:CDS 20.0%
!!! AAATTTTTTCTAAGAAGAGT+AGG - chr1.1:73817839-73817858 MS.gene37701:CDS 20.0%
!!! TTCAAGTTGATTAATTTGAT+TGG + chr1.1:73817980-73817999 None:intergenic 20.0%
! AAAACAGATGATGAATTTCA+TGG - chr1.1:73817744-73817763 MS.gene37701:intron 25.0%
! ATGAATATGAATCTTCATCA+TGG - chr1.1:73816413-73816432 MS.gene37701:CDS 25.0%
! TAAATTGTAGGGGTTTAAAA+AGG - chr1.1:73817432-73817451 MS.gene37701:intron 25.0%
! TATCTCATCAGATTAAACAA+AGG + chr1.1:73816776-73816795 None:intergenic 25.0%
! TATTGAAGATGTTGATGTAT+TGG - chr1.1:73818062-73818081 MS.gene37701:CDS 25.0%
! TTAAATACTACTACTCACAT+AGG + chr1.1:73816708-73816727 None:intergenic 25.0%
! TTATATTTCAACTGCAATTG+AGG + chr1.1:73816906-73816925 None:intergenic 25.0%
! TTCTTCTAATGTTCTTCAAA+AGG + chr1.1:73817513-73817532 None:intergenic 25.0%
! TTGTTTAATCTGATGAGATA+AGG - chr1.1:73816776-73816795 MS.gene37701:CDS 25.0%
!! GTTTTCATTGAATGGAATTA+TGG - chr1.1:73817370-73817389 MS.gene37701:intron 25.0%
!! TTTGACTTCTCTCTATATTA+GGG + chr1.1:73817041-73817060 None:intergenic 25.0%
!!! AAAAGTCTTAGGCTATTTTT+GGG - chr1.1:73816924-73816943 MS.gene37701:CDS 25.0%
!!! ATTGTGTGAGTTATTTTTCT+TGG - chr1.1:73817002-73817021 MS.gene37701:CDS 25.0%
!!! CTATATCATATGTTTTTGTG+AGG + chr1.1:73816538-73816557 None:intergenic 25.0%
!!! GCATTTTGATTTGAAAATGA+AGG - chr1.1:73817396-73817415 MS.gene37701:intron 25.0%
!!! GTTTTGGCAAAATTTGTTTA+AGG - chr1.1:73818017-73818036 MS.gene37701:CDS 25.0%
!!! TAAAAGTCTTAGGCTATTTT+TGG - chr1.1:73816923-73816942 MS.gene37701:CDS 25.0%
!!! TAAGAGATATTGAAGTGTTT+TGG - chr1.1:73818001-73818020 MS.gene37701:CDS 25.0%
!!! TAGTGTTTGTTTTCATTGAA+TGG - chr1.1:73817362-73817381 MS.gene37701:intron 25.0%
!!! TTTTGACTTCTCTCTATATT+AGG + chr1.1:73817042-73817061 None:intergenic 25.0%
AATATGAATCTTCATCATGG+TGG - chr1.1:73816416-73816435 MS.gene37701:CDS 30.0%
ACTAACTGTTGCAAGAAATT+AGG + chr1.1:73817787-73817806 None:intergenic 30.0%
AGAAGTCAAAATGTATTGGA+CGG - chr1.1:73817051-73817070 MS.gene37701:CDS 30.0%
AGAATAATAGAAAAGGCTTG+AGG + chr1.1:73816629-73816648 None:intergenic 30.0%
AGAGAGAAGTCAAAATGTAT+TGG - chr1.1:73817047-73817066 MS.gene37701:CDS 30.0%
AGGGAGAAGAATAATAGAAA+AGG + chr1.1:73816636-73816655 None:intergenic 30.0%
ATATGAATCTTCATCATGGT+GGG - chr1.1:73816417-73816436 MS.gene37701:CDS 30.0%
ATTGTCTCTTATGATGAGAA+GGG + chr1.1:73816808-73816827 None:intergenic 30.0%
CCACAAATCATATAGTTTCA+TGG - chr1.1:73816570-73816589 MS.gene37701:CDS 30.0%
CCATGAAACTATATGATTTG+TGG + chr1.1:73816573-73816592 None:intergenic 30.0%
TATTGTCTCTTATGATGAGA+AGG + chr1.1:73816809-73816828 None:intergenic 30.0%
! ATATAGTTTCATGGAGTACT+GGG - chr1.1:73816579-73816598 MS.gene37701:CDS 30.0%
! CTTTGGAAAGAAATGAATGA+AGG - chr1.1:73816963-73816982 MS.gene37701:CDS 30.0%
! GAAACTATATGATTTGTGGA+AGG + chr1.1:73816569-73816588 None:intergenic 30.0%
! TGGCAAAATTTGTTTAAGGA+GGG - chr1.1:73818021-73818040 MS.gene37701:CDS 30.0%
! TTGGCAAAATTTGTTTAAGG+AGG - chr1.1:73818020-73818039 MS.gene37701:CDS 30.0%
!! GAACAATAGCTTTGTTGTTT+GGG - chr1.1:73816601-73816620 MS.gene37701:CDS 30.0%
!! TCATATGTTTTTGTGAGGAA+TGG + chr1.1:73816533-73816552 None:intergenic 30.0%
!! TTAAAAAGGTTGATGCAGAT+AGG - chr1.1:73817446-73817465 MS.gene37701:intron 30.0%
AAGTCAAAATGTATTGGACG+GGG - chr1.1:73817053-73817072 MS.gene37701:CDS 35.0%
ACATCTGCATCAACATTACT+AGG + chr1.1:73817883-73817902 None:intergenic 35.0%
AGATGATGAATTTCATGGCA+AGG - chr1.1:73817749-73817768 MS.gene37701:intron 35.0%
AGTAGGAGAACTATTGATGA+AGG - chr1.1:73817856-73817875 MS.gene37701:CDS 35.0%
ATCTTGAAGCAATGGAAAGA+AGG - chr1.1:73817698-73817717 MS.gene37701:intron 35.0%
CATATAGTTTCATGGAGTAC+TGG - chr1.1:73816578-73816597 MS.gene37701:CDS 35.0%
GAAGTCAAAATGTATTGGAC+GGG - chr1.1:73817052-73817071 MS.gene37701:CDS 35.0%
GAGTTAGGAATGAATGACTT+TGG - chr1.1:73816946-73816965 MS.gene37701:CDS 35.0%
GATGATGAATTTCATGGCAA+GGG - chr1.1:73817750-73817769 MS.gene37701:intron 35.0%
GTAGATAATATGACATCACG+AGG - chr1.1:73817168-73817187 MS.gene37701:intron 35.0%
GTAGGAGAACTATTGATGAA+GGG - chr1.1:73817857-73817876 MS.gene37701:CDS 35.0%
GTTGATGCAGATGTTGAATT+AGG - chr1.1:73817889-73817908 MS.gene37701:CDS 35.0%
TAACATTGGCATAGACATAG+AGG + chr1.1:73817340-73817359 None:intergenic 35.0%
TAGAACTCATCTTGAAGCAA+TGG - chr1.1:73817690-73817709 MS.gene37701:intron 35.0%
TATGTGACACGTTTCAAACA+CGG - chr1.1:73817232-73817251 MS.gene37701:intron 35.0%
TGAACAACATCAAGATGTTG+AGG - chr1.1:73817948-73817967 MS.gene37701:CDS 35.0%
TGTTGTGCTTGAAGAATCTA+GGG + chr1.1:73816655-73816674 None:intergenic 35.0%
TTGTTGTGCTTGAAGAATCT+AGG + chr1.1:73816656-73816675 None:intergenic 35.0%
! ACAAGTTCTAATGGTTGAGT+TGG - chr1.1:73817639-73817658 MS.gene37701:intron 35.0%
! GCTAATGAGATGTTTCTAAG+AGG - chr1.1:73817478-73817497 MS.gene37701:intron 35.0%
! TCACATAGGTATTAAGTTGC+CGG + chr1.1:73816694-73816713 None:intergenic 35.0%
!! AAACACGGCATTGATACATA+TGG - chr1.1:73817247-73817266 MS.gene37701:intron 35.0%
!! ACAATTTCTCCAGTTTTGTC+CGG - chr1.1:73816672-73816691 MS.gene37701:CDS 35.0%
!! GGAACAATAGCTTTGTTGTT+TGG - chr1.1:73816600-73816619 MS.gene37701:CDS 35.0%
!! TATGTTTTTGTGAGGAATGG+TGG + chr1.1:73816530-73816549 None:intergenic 35.0%
!!! TTAGGCTATTTTTGGGAGTT+AGG - chr1.1:73816931-73816950 MS.gene37701:CDS 35.0%
AGGGAAGGACTTCATGAAAA+TGG - chr1.1:73816500-73816519 MS.gene37701:CDS 40.0%
AGTTAGTTCAGCAGAAGGAA+TGG - chr1.1:73817800-73817819 MS.gene37701:intron 40.0%
GGAATGGAGAAAAGAGTTAG+AGG - chr1.1:73817816-73817835 MS.gene37701:intron 40.0%
! AGGAAGTTCTTCCTTTTCTG+TGG - chr1.1:73816460-73816479 MS.gene37701:CDS 40.0%
! AGTTCTTCCTTTTCTGTGGT+TGG - chr1.1:73816464-73816483 MS.gene37701:CDS 40.0%
! ATTAAGTTGCCGGACAAAAC+TGG + chr1.1:73816684-73816703 None:intergenic 40.0%
! TTTTCATGAAGTCCTTCCCT+TGG + chr1.1:73816500-73816519 None:intergenic 40.0%
!! AAAAGGTTGATGCAGATAGG+TGG - chr1.1:73817449-73817468 MS.gene37701:intron 40.0%
!! AAAGGTTGATGCAGATAGGT+GGG - chr1.1:73817450-73817469 MS.gene37701:intron 40.0%
AGGTTCACCAACCACAGAAA+AGG + chr1.1:73816474-73816493 None:intergenic 45.0%
GCAACAGTTAGTTCAGCAGA+AGG - chr1.1:73817795-73817814 MS.gene37701:intron 45.0%
! CTGGGAAGGTTTGGATTAGA+CGG - chr1.1:73817586-73817605 MS.gene37701:intron 45.0%
! GCACGACAGACAAGTTCTAA+TGG - chr1.1:73817630-73817649 MS.gene37701:intron 45.0%
! GTTTTTGTGAGGAATGGTGG+AGG + chr1.1:73816527-73816546 None:intergenic 45.0%
! TCTTCATCATGGTGGGATGA+AGG - chr1.1:73816424-73816443 MS.gene37701:CDS 45.0%
! TGGATTAGACGGAATCGAAG+TGG - chr1.1:73817597-73817616 MS.gene37701:intron 45.0%
!! ATGAAGGAGGAGTTTGTTGG+AGG - chr1.1:73816440-73816459 MS.gene37701:CDS 45.0%
!! GATGTATTGGCTGAGCAACT+TGG - chr1.1:73818075-73818094 MS.gene37701:CDS 45.0%
CTTCCCAGCTCAACACATGA+CGG + chr1.1:73817574-73817593 None:intergenic 50.0%
GGGATGAAGGAGGAGTTTGT+TGG - chr1.1:73816437-73816456 MS.gene37701:CDS 50.0%
TAGACGGAATCGAAGTGGAC+CGG - chr1.1:73817602-73817621 MS.gene37701:intron 50.0%
TGAAGTCCTTCCCTTGGTTG+AGG + chr1.1:73816494-73816513 None:intergenic 50.0%
TGTGTTGAGCTGGGAAGGTT+TGG - chr1.1:73817577-73817596 MS.gene37701:intron 50.0%
TTCCCAGCTCAACACATGAC+GGG + chr1.1:73817573-73817592 None:intergenic 50.0%
! TCATCATGGTGGGATGAAGG+AGG - chr1.1:73816427-73816446 MS.gene37701:CDS 50.0%
!! GGTTGGTGAACCTCAACCAA+GGG - chr1.1:73816481-73816500 MS.gene37701:CDS 50.0%
!! TGGTTGGTGAACCTCAACCA+AGG - chr1.1:73816480-73816499 MS.gene37701:CDS 50.0%
AGACCCGTCATGTGTTGAGC+TGG - chr1.1:73817567-73817586 MS.gene37701:intron 55.0%
CGTCATGTGTTGAGCTGGGA+AGG - chr1.1:73817572-73817591 MS.gene37701:intron 55.0%
CTTGTCTGTCGTGCCTCAAC+CGG + chr1.1:73817624-73817643 None:intergenic 55.0%
GAATCGAAGTGGACCGGTTG+AGG - chr1.1:73817608-73817627 MS.gene37701:intron 55.0%
GACCCGTCATGTGTTGAGCT+GGG - chr1.1:73817568-73817587 MS.gene37701:intron 55.0%
GGTGAACCTCAACCAAGGGA+AGG - chr1.1:73816485-73816504 MS.gene37701:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 73816413 73818125 73816413 ID=MS.gene37701
chr1.1 mRNA 73816413 73818125 73816413 ID=MS.gene37701.t1;Parent=MS.gene37701
chr1.1 exon 73817829 73818125 73817829 ID=MS.gene37701.t1.exon1;Parent=MS.gene37701.t1
chr1.1 CDS 73817829 73818125 73817829 ID=cds.MS.gene37701.t1;Parent=MS.gene37701.t1
chr1.1 exon 73816413 73817096 73816413 ID=MS.gene37701.t1.exon2;Parent=MS.gene37701.t1
chr1.1 CDS 73816413 73817096 73816413 ID=cds.MS.gene37701.t1;Parent=MS.gene37701.t1
Gene Sequence

>MS.gene37701

ATGAATATGAATCTTCATCATGGTGGGATGAAGGAGGAGTTTGTTGGAGGAAGTTCTTCCTTTTCTGTGGTTGGTGAACCTCAACCAAGGGAAGGACTTCATGAAAATGGTCCTCCACCATTCCTCACAAAAACATATGATATAGTTGATGATCCTTCCACAAATCATATAGTTTCATGGAGTACTGGGAACAATAGCTTTGTTGTTTGGGATCCTCAAGCCTTTTCTATTATTCTTCTCCCTAGATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCCGGCAACTTAATACCTATGTGAGTAGTAGTATTTAATTTCAACTCTCTACTCAAGTACTGATGATATATATGTTTTTTTTTCCTTTGTTTAATCTGATGAGATAAGGCAACGTCCCTTCTCATCATAAGAGACAATATATGACATCACTAGAGAACATTTTTGTTTCATTATATGGAATAATGTAGTAATAAATTAAATTGCATTTTGCAACCTCAATTGCAGTTGAAATATAAAAGTCTTAGGCTATTTTTGGGAGTTAGGAATGAATGACTTTGGAAAGAAATGAATGAAGGACAATCATCTAGCTTGATTGTGTGAGTTATTTTTCTTGGTAATACAAAATTTCCCTAATATAGAGAGAAGTCAAAATGTATTGGACGGGGATTTTAGAGAATTTCAATAAATTCTTCGAATCATTTTAATGTTTAAATTATACTCTCAAAATTAGCATAGACAGACATCTATATAACAAGTTGTAGATAATATGACATCACGAGGAAACATTTTTGTTCGTCTCTAATGATCGAGAACATGTCTAGTATGTGACACGTTTCAAACACGGCATTGATACATATGGTTCTATTCAATTAATTCTATTTTATTTAAAATTATTAATGATGTTTATGTGTGAGTGTCATGTCATACCTCTATGTCTATGCCAATGTTAATTAGTGTTTGTTTTCATTGAATGGAATTATGGATTGCATTTTGATTTGAAAATGAAGGAGAAATTTGAAATTAAATTGTAGGGGTTTAAAAAGGTTGATGCAGATAGGTGGGAATTTGCTAATGAGATGTTTCTAAGAGGACAAAAAATCCTTTTGAAGAACATTAGAAGAAGAAAAACAAATCAATCTCAAGTAATGCAAGCACTAGACCCGTCATGTGTTGAGCTGGGAAGGTTTGGATTAGACGGAATCGAAGTGGACCGGTTGAGGCACGACAGACAAGTTCTAATGGTTGAGTTGGTGAAACTTAGACAACAACAGCAGAATACTAGAACTCATCTTGAAGCAATGGAAAGAAGGCTTAAAAGAAGTGAACAGAAACAAAAACAGATGATGAATTTCATGGCAAGGGCAATACAAAAGCCTAATTTCTTGCAACAGTTAGTTCAGCAGAAGGAATGGAGAAAAGAGTTAGAGGAAATTTTTTCTAAGAAGAGTAGGAGAACTATTGATGAAGGGCCTAGTAATGTTGATGCAGATGTTGAATTAGGATATGTTGATAAAGATTGCTTAAATTTTGTCAAACTTGAACAACATCAAGATGTTGAGGAAAACTCCAATCAAATTAATCAACTTGAAGTAAGAGATATTGAAGTGTTTTGGCAAAATTTGTTTAAGGAGGGTATTGAAGATGAAATAGATATTGAAGATGTTGATGTATTGGCTGAGCAACTTGGTTATCTTGCCTCTAGTCCTCCTAAATAG
Protein sequence

>MS.gene37701.t1

MNMNLHHGGMKEEFVGGSSSFSVVGEPQPREGLHENGPPPFLTKTYDIVDDPSTNHIVSWSTGNNSFVVWDPQAFSIILLPRFFKHNNFSSFVRQLNTYGFKKVDADRWEFANEMFLRGQKILLKNIRRRKTNQSQVMQALDPSCVELGRFGLDGIEVDRLRHDRQVLMVELVKLRQQQQNTRTHLEAMERRLKRSEQKQKQMMNFMARAIQKPNFLQQLVQQKEWRKELEEIFSKKSRRTIDEGPSNVDADVELGYVDKDCLNFVKLEQHQDVEENSNQINQLEVRDIEVFWQNLFKEGIEDEIDIEDVDVLAEQLGYLASSPPK