AlfalfaGEDB | MS.gene37841

M. sativa cultivar XinJiangDaYe / MS.gene37841

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18 PF04434.20 PF10551.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37841.t1	XP_024640285.1	95.9	951	23	2	1	951	1	935	0.00E+00	1571.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37841.t1	Q9ZVC9	50.8	892	330	11	1	888	1	787	1.9e-239	830.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37841.t1	A0A396HY69	95.9	951	23	2	1	951	1	935	0.0e+00	1571.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene37841.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37841.t1	MTR_6g051425	30.847	295	166	9	47	322	16	291	2.71e-40	152
MS.gene37841.t1	MTR_4g035820	29.455	275	144	8	48	297	75	324	2.06e-22	103
MS.gene37841.t1	MTR_2g098880	36.066	122	63	1	47	153	60	181	1.14e-17	84.3
MS.gene37841.t1	MTR_2g098880	36.066	122	63	1	47	153	72	193	1.39e-17	84.3
MS.gene37841.t1	MTR_7g087480	47.423	97	48	1	806	899	184	280	7.07e-17	82.4
MS.gene37841.t1	MTR_3g006370	40.566	106	49	1	47	138	49	154	1.73e-15	77.4
MS.gene37841.t1	MTR_4g067290	39.216	102	50	2	47	136	55	156	4.40e-15	76.3
MS.gene37841.t1	MTR_4g067290	39.216	102	50	2	47	136	55	156	4.83e-15	76.3
MS.gene37841.t1	MTR_4g067290	39.216	102	50	2	47	136	75	176	6.73e-15	76.3
MS.gene37841.t1	MTR_4g067290	39.216	102	50	2	47	136	73	174	6.95e-15	75.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37841.t1	AT2G27110	50.774	904	365	17	1	890	1	838	0.0	856
MS.gene37841.t1	AT2G27110	62.329	146	54	1	806	950	705	850	2.83e-46	179
MS.gene37841.t1	AT2G27110	50.774	904	365	17	1	890	1	838	0.0	856
MS.gene37841.t1	AT2G27110	62.329	146	54	1	806	950	705	850	2.83e-46	179
MS.gene37841.t1	AT2G27110	53.899	731	267	13	168	887	19	690	0.0	757
MS.gene37841.t1	AT2G27110	62.329	146	54	1	806	950	560	705	8.26e-47	179
MS.gene37841.t1	AT4G38180	41.471	680	357	7	24	681	49	709	0.0	560
MS.gene37841.t1	AT4G38170	48.409	440	220	3	230	666	21	456	1.46e-144	441
MS.gene37841.t1	AT3G06250	37.102	628	343	9	41	666	183	760	2.56e-123	393
MS.gene37841.t1	AT3G06250	39.560	91	55	0	47	137	27	117	1.30e-15	82.0

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Find 220 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTTATGTCTTGCGAGA+AGG	0.580603	5.3:-70412316	MS.gene37841:CDS
AAACTCGGGATCTCATGCTG+AGG	0.664329	5.3:-70413316	MS.gene37841:CDS
AAAGTGCAGGCTGAAAACCC+TGG	0.650722	5.3:-70412700	MS.gene37841:CDS
AAAGTTGCGAGGCGATGATT+AGG	0.441916	5.3:-70413086	MS.gene37841:CDS
AACTCGCTGACGAGACACTG+GGG	0.704142	5.3:+70411091	None:intergenic
AACTCGCTGACGAGGCACTG+GGG	0.710997	5.3:+70411157	None:intergenic
AACTCGCTGACGAGGCATTG+GGG	0.657743	5.3:+70411124	None:intergenic
AACTCGGGATCTCATGCTGA+GGG	0.600343	5.3:-70413315	MS.gene37841:CDS
AACTTGCTTACGTGCCACTG+GGG	0.680413	5.3:+70411190	None:intergenic
AAGGATGACTGAAAGTTGCG+AGG	0.682372	5.3:-70413097	MS.gene37841:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGTGGACTTGTAATATCA+GGG	-	chr5.3:70411944-70411963	MS.gene37841:CDS	30.0%
ACAAAATCATTTGACCATGA+TGG	+	chr5.3:70409259-70409278	None:intergenic	30.0%
ACTTTCAACAACAGCAAATA+AGG	-	chr5.3:70411564-70411583	MS.gene37841:CDS	30.0%
AGCAATGACACTTTCTTAAA+AGG	-	chr5.3:70412717-70412736	MS.gene37841:CDS	30.0%
ATACAGACCTAGCAATTATT+AGG	+	chr5.3:70412227-70412246	None:intergenic	30.0%
ATAGACAAATATGAACTCAG+AGG	-	chr5.3:70409587-70409606	MS.gene37841:intron	30.0%
ATGATTAGGATAGAGCAAAA+GGG	-	chr5.3:70408693-70408712	MS.gene37841:intron	30.0%
CAACATTACCAATGTTCTTT+AGG	-	chr5.3:70409747-70409766	MS.gene37841:intron	30.0%
CAATCTCAACATCAAAATAC+TGG	-	chr5.3:70411251-70411270	MS.gene37841:CDS	30.0%
CATAACCAAACAAGAGAAAA+TGG	+	chr5.3:70412291-70412310	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	70408360	70413427	70408360	ID=MS.gene37841
chr5.3	mRNA	70408360	70413427	70408360	ID=MS.gene37841.t1;Parent=MS.gene37841
chr5.3	exon	70410971	70413427	70410971	ID=MS.gene37841.t1.exon1;Parent=MS.gene37841.t1
chr5.3	CDS	70410971	70413427	70410971	ID=cds.MS.gene37841.t1;Parent=MS.gene37841.t1
chr5.3	exon	70410549	70410638	70410549	ID=MS.gene37841.t1.exon2;Parent=MS.gene37841.t1
chr5.3	CDS	70410549	70410638	70410549	ID=cds.MS.gene37841.t1;Parent=MS.gene37841.t1
chr5.3	exon	70410181	70410330	70410181	ID=MS.gene37841.t1.exon3;Parent=MS.gene37841.t1
chr5.3	CDS	70410181	70410330	70410181	ID=cds.MS.gene37841.t1;Parent=MS.gene37841.t1
chr5.3	exon	70408880	70408993	70408880	ID=MS.gene37841.t1.exon4;Parent=MS.gene37841.t1
chr5.3	CDS	70408880	70408993	70408880	ID=cds.MS.gene37841.t1;Parent=MS.gene37841.t1
chr5.3	exon	70408360	70408404	70408360	ID=MS.gene37841.t1.exon5;Parent=MS.gene37841.t1
chr5.3	CDS	70408360	70408404	70408360	ID=cds.MS.gene37841.t1;Parent=MS.gene37841.t1

Gene Sequence

>MS.gene37841

ATGGATGTTCATGTGATAACTATCGGAGAAGGAAGTGGATCGATGGAACATAATGTGGATGCTGAATTTGGTCAAGTTAATGATGCTGGAAACTCGGGATCTCATGCTGAGGGTATGGTTTCGGAGCCATATTTTTCGGAGCCGTATTTGGGCATGGTATTTGATTCTGAAGATTCTGCTAAAAGTTTTTATAGTGAGTATGCTAGACGGTCGGGTTTCAGCTCAAAAGCTGGTTTGCACGGTCAGTTTAATGCTGATGGGACAAATATGTTCCGGGAGTTTGTGTGTAGCAGGGAAGGTTTGAAAAGAAGGATGACTGAAAGTTGCGAGGCGATGATTAGGATAGAGCAAAAGGGTCAAAATAAGTGGGTTGTTACAAAATTTGTGAAGGAACATAGCCATTCTCTGGCGGTACCTGATAAGGTGGAAAAACTTCAACCAGTGAAGCACTTTTCTAGTGTTGGAAGAACCATGCCTGAAACTTACAAAGGACTGGGGCTTGTTCCAACTGGTGTCATGTATATATCTATTGATGCGCATCACGTTTCCTCTGACAATAGTCAAAAGATTAGGAATTCTCCTGCAGCTGCCGCGAAAACGAGTCATCCAGTTAAAAATTCCACTTCGATGCCTTATAATGTGAGGCAACCCATTAAAAAGAAGACATTAGGGAGGGATGCTCGGGACCTGCTGGAGTATTTTATGAAAGTGCAGGCTGAAAACCCTGGTTTCTTCTATGCAATACAACTTGATGAAGAAAATCGTATGTCTAATGTGTTTTGGGCAGATGCAAGATCAAGGACAGCTTACAGTCATTTTGGTGATGCAGTTACCCTGGACACAACACATAGAGCAAATCAATATAATGTGCCATATGCTCCATTCACTGGGATAAACCATCATGGTCAAATGATTTTGTTTGGTTGTGCACTCATATTTGATGATTCTGAGGCTTCTTTTGGTTGGCTCTTCAAGACATTTCTAGCAGCTATGAATGACCGTCACCCTCTCTCTATAACTACCGATCAGGACAGATGCATACAAACAGCAGTATCACAAGTTTTTCCCCAAGCACGTCACTGCATAAACAAACGTTATGTCTTGCGAGAAGGCCACGAAAAATTGGGCCATGTATGTCGCATGCATCCTTATTTTCACTATGAACTCTATAATTGCATTAACCTGACAGAAACAATTGAGGAGTTTGATTTTTCTTGGAATTCTATCATAGACAAATATGAACTCAGAGGGCATGATTGGCTTCAGTCCTTGTATAGTGCTCGTGATCAATGGGTTCCAGCATATTTCCGTGATTCATTTTTCGCTGTAATATCTCCTACTCAAGGATTTGAAGCCTCTTTTTTGGACGGCGTTGTCAACCGGCATACAACATTACCAATGTTCTTTAGGCAGTATGAACTAGCTCTGGAGAAATGGTTTGAAAAGGAAATAGAATCAGATTTTGAGACAATTAGCACTAATCCAGTTCTAAAGACACCTTCGCCAATGGAGAATCAGGTTGCTAAGCTTTATACACAGAGAATATTTTTGAAGTTTCAAGAAGAGCTAGTTGAAACTTTTGCTTATACCGCCAACAGAATCGAAGAGGATGGGGTGAATAGCATATTTGGAGTTGCAAAGTTTGATGATGTCGAAAAGTCGTACACTGTCACATTAAACCAGTCTGAATTGAGAGCTAACTGTACATGCCAAATGTTTGAGTTTTCAGGCATTCTTTGTAGGCACATTTTAACTGTTTTTACCGTGTCTAATGTATTCACTATACCATCCCACTACATCTTAAAACGGTGGACAATGGAAGCAAAAAACAGTATTGTATTGGACGAACGTGGTGGTGAATCACTTGCATATGAGTCTTTGACATCACGGTATGCCAATCTGTGCCGGGAAGCCATCAGATATGCTGAGGAAGGTGCTGTAGCTATGGAAACTTATGATGCTGCAATGACTGGTCTTAGAGAAGGTGGAAAGAAAGTTGATGTCATGAAGAGAAATATTGCCAAAGTGTCATCAACTAATCATCGACTCAGCTGGAATGATTGCTCCGATCCCGACAAGAGAACCCCTACTTCAACATCAGATACAAGTACAACCCCTCTTTTATGGCCACTTAACGATGAAACATCGACGTTTAATCTTAATGACGTCGATGCTCCTGTTCAACCAATGGCTGATCTGAATTTACCACAAACGACCCCAGTGGCACGTAAGCAAGTTGATGTTCCATCCCCAGTGCCTCGTCAGCGAGTTGAGAGTCCATCCCCAATGCCTCGTCAGCGAGTTGATAGTCCATCCCCAGTGTCTCGTCAGCGAGTTGATGGTCCACGACCAGTGCCTCGTAGGCGAGTTGATGGTCCATCCCCAATGCCTCGTCAGCGAGATGATGGTCCGCCCCCAGCGCCTCTTCAGCAAGATGATGGTCCACCTGAAAACACGGTATGGCAAGAACATCTCTGTTTTTGTTGCTTTTTTATATATGTTCTTGGGATTGGAATAGAATGCATAATGTTGGAAATTCCGCCTTTATTGCGGTCTGCCCCTAGTCGCCTAAATTGCAACCTTTGGTTTGCCTTCATTGCAGCTTCCAACACCTTCATTTTGTTGGCTTTGAGGGGGTGGATTTAGTCCCACATCGGACAGATAGCACTCTTGAGAAGAGTTTATAAAGAGGAGGCACTTCTCACCTTACAAGCCGGTTTTGTAAGGATGAGTTAGGCCCCAAATTTGAATACATAACATTAAGCCAGTCCGTTTATTCTGTCATGTAGGTGGCTCTTCCATCTTTGAAGTCAATGACGTGGGTAATGGAGAACAAAACCTCAAATCCAGAGAACAGAGTAGCCGTTGTCAATCTCAAGGTATGTGCACAACAATCTCAACATCAAAATACTGGTAGTGGTATTCTTGATATAATTTAAAATCAGTTTTGGATACCTGTGTTTCACTTGAGAAACTCCTGCCATTCGGTTGACCATGGTCCTTTTTTAGTGTTAGTGTACTTAGCTTTTATCCTGTCGCATCATTTTAACAAAGTAACAGTGAGGATTGTCAGTCATTAAACATATTTCAATTGCAGTTGCAAGATTACAACAAGAGTCCATCAACAGAATATGAGGTTAAGTTCCATCTCTCTCGGGTTACTGTGGGACCTGTTTTGAAGTCTATGACTGAAGTCGGGGAACAACTTTCAACAACAGCAAATAAGGTTGCTGTAATAAATCTCAAGGTATGTTATTTTGTTCTTTAGACTCATTATTCTCTAATATGCCCGGTTCATATGCTTTGTTGCTCTGTTATTCTAGTACTGGAATGAAAAGTAGAGATCAATGCAATTGTCTTCGTACTAAGGGGATGTAAAGCAAAAAGGGTGGTACATATAAGCTGATTTATATTTAAAAGAAAGAATCTGGCTGTCGAGGTAGATAATTTTAACTTTAAAATAGAATGACAACAAAGAACAGAACATAACTAGTCTATGGTCTTTGAGGCTGGTGGCATAGGAATATTGCTAAGATGAATATATTTATACCGGCTATTAATAATGTGTTGAAGATGCTGTCGAGAATGTGGACTTGTAATATCAGGGAAAGGCATTAAACTTGGTTTTTGACTTCAATATCTTGCAATTGGTTTTCACCAACCTGAACTTATAATATAAGCAACACACAAAGGATAGAATATTGAGCTTCATTCCTTTGCATCTCAAGACTGAAAGAATTAACATTTTAATTTGGAAGCCATATTTTGTTGCAAATAGAATATTTGTGGAGTGATAATTGTGTTAAATATCGATGTCTAAGATGCTTTGGTTGCGGGTGAAATCTTTGTGCATATTATGTAAGACCTAATAATTGCTAGGTCTGTATAAAAGTATGCATTTTTTTTCTATCTAACTGATCCATGTCTCCCATTTTCTCTTGTTTGGTTATGGAGAGAATATAGCGTAGAAGGAACTAAGTTGATGTGGGGGCCACATTCAATTTTATCTCAAGTTGAGGAAACACAATTTCAAGTAGACAACTTGCTCTTTTTTAATTTTACAGATCTATTTATCTATCATTTAATGTGGGGGTCTATTTGGTTATTTTATCAAGGTAAAAAAGTCATTACATTGATTATTCATCTTTTCCCCACTTTTCCATCCGACCAAATAAGCAAAGGAGAAAATTATACACCTCTTTCTCTCTGTCTATCCATATAAACAACAGACAAAACTTCTCATTTTCTTCCAGCCTCCAAATAGAAGTAGTAAAGAATAAAAGGAAATGTAAAGAAAATAATGGTATTGTTATTATTATTATGGGAGAAATAATGGTTCTTGTTTTAGTTATTGTGCAGCAATGACACTTTCTTAAAAGGCTTTCTTTACTTTGAATAACTTTAAGTTTGTTGAAATTGTTTCAATTGTCTCAGCTTGATAATGCCCGGGTTTCTGGCGAGTCTGAAGTTAAGTTTCAAGTATCCAGGGATGCATTGGGTGCTGTGCTACGATCAATGGCTTATATCCGCGAGCAACTTTCTTGTGCTGTAAGTTTCCTATTACCTAAATATGTGTATCATCCATCATCGCATACAAATCAATTTATCTTTAAAAGTAATCCAACTATGTTACAAGAAAGCCAACTAGTTTTCCATCTCTGGAGGCGTAATAATCATGTTAAAATCTACAATTTTTTTTTAATGACAAATGTTAGTATGTTAATTGTTAGTTTTTTTTTTTTCCTTACCATGGTTTGAACCCTGGACCTCAACTCCTTAACCCTTAGCTCAGATTAGTTGAGCTACCCAACCCACCCATGTTAAAATCTAGGCTAGAGTTCTATGTTAAAATTTACATTATAATTTGATAATGATATGTCAACTCGTATCTTATATTGTTACTGCAATTCAACTTTTTTTTTTTTTCCTACAATTCAACTTAGTTTAATCTAATTTTTTTTTATTTAGATAAACCTCTTTCTCTGTGTATATTAATATTTGTTTGCATGCAAAATTTTCGCAGGGCGACGCGAACTCAGAACCTGTGTCAAAAAAGCGTCGAAACTGA

Protein sequence

>MS.gene37841.t1

MDVHVITIGEGSGSMEHNVDAEFGQVNDAGNSGSHAEGMVSEPYFSEPYLGMVFDSEDSAKSFYSEYARRSGFSSKAGLHGQFNADGTNMFREFVCSREGLKRRMTESCEAMIRIEQKGQNKWVVTKFVKEHSHSLAVPDKVEKLQPVKHFSSVGRTMPETYKGLGLVPTGVMYISIDAHHVSSDNSQKIRNSPAAAAKTSHPVKNSTSMPYNVRQPIKKKTLGRDARDLLEYFMKVQAENPGFFYAIQLDEENRMSNVFWADARSRTAYSHFGDAVTLDTTHRANQYNVPYAPFTGINHHGQMILFGCALIFDDSEASFGWLFKTFLAAMNDRHPLSITTDQDRCIQTAVSQVFPQARHCINKRYVLREGHEKLGHVCRMHPYFHYELYNCINLTETIEEFDFSWNSIIDKYELRGHDWLQSLYSARDQWVPAYFRDSFFAVISPTQGFEASFLDGVVNRHTTLPMFFRQYELALEKWFEKEIESDFETISTNPVLKTPSPMENQVAKLYTQRIFLKFQEELVETFAYTANRIEEDGVNSIFGVAKFDDVEKSYTVTLNQSELRANCTCQMFEFSGILCRHILTVFTVSNVFTIPSHYILKRWTMEAKNSIVLDERGGESLAYESLTSRYANLCREAIRYAEEGAVAMETYDAAMTGLREGGKKVDVMKRNIAKVSSTNHRLSWNDCSDPDKRTPTSTSDTSTTPLLWPLNDETSTFNLNDVDAPVQPMADLNLPQTTPVARKQVDVPSPVPRQRVESPSPMPRQRVDSPSPVSRQRVDGPRPVPRRRVDGPSPMPRQRDDGPPPAPLQQDDGPPENTVALPSLKSMTWVMENKTSNPENRVAVVNLKLQDYNKSPSTEYEVKFHLSRVTVGPVLKSMTEVGEQLSTTANKVAVINLKLDNARVSGESEVKFQVSRDALGAVLRSMAYIREQLSCAGDANSEPVSKKRRN