Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37867.t1 | XP_027333727.1 | 86.8 | 76 | 10 | 0 | 148 | 223 | 591 | 666 | 4.00E-29 | 138.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37867.t1 | Q39238 | 71.4 | 77 | 21 | 1 | 148 | 223 | 601 | 677 | 6.1e-26 | 119.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37867.t1 | A0A5B6ZZW0 | 86.8 | 76 | 10 | 0 | 148 | 223 | 137 | 212 | 3.8e-29 | 138.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37867.t1 | MTR_5g086790 | 83.333 | 78 | 13 | 0 | 148 | 225 | 584 | 661 | 6.62e-38 | 140 |
| MS.gene37867.t1 | MTR_5g087050 | 82.051 | 78 | 14 | 0 | 148 | 225 | 516 | 593 | 1.90e-37 | 139 |
| MS.gene37867.t1 | MTR_5g087240 | 80.769 | 78 | 15 | 0 | 148 | 225 | 528 | 605 | 6.41e-36 | 135 |
| MS.gene37867.t1 | MTR_5g087250 | 74.359 | 78 | 20 | 0 | 148 | 225 | 421 | 498 | 1.04e-31 | 122 |
| MS.gene37867.t1 | MTR_5g087250 | 53.030 | 66 | 29 | 2 | 60 | 123 | 4 | 69 | 4.75e-11 | 62.8 |
| MS.gene37867.t1 | MTR_5g086960 | 82.143 | 56 | 10 | 0 | 148 | 203 | 126 | 181 | 1.29e-24 | 97.4 |
| MS.gene37867.t1 | MTR_5g086940 | 83.929 | 56 | 9 | 0 | 148 | 203 | 255 | 310 | 3.42e-24 | 99.4 |
| MS.gene37867.t1 | MTR_5g086970 | 69.643 | 56 | 17 | 0 | 148 | 203 | 353 | 408 | 1.61e-17 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37867.t1 | AT5G20930 | 70.513 | 78 | 22 | 1 | 148 | 224 | 601 | 678 | 1.31e-31 | 123 |
Find 58 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGACCTACTGTTTCTTATA+AGG | 0.277618 | 5.3:+70078244 | MS.gene37867:CDS |
| TCTTGAAGACACGATTATTA+AGG | 0.312211 | 5.3:+70078199 | MS.gene37867:CDS |
| ATCCATCCGCATATGGCTTT+TGG | 0.314610 | 5.3:-70079114 | None:intergenic |
| TTGCTCTATCAAACGCTCTT+TGG | 0.336572 | 5.3:+70078134 | MS.gene37867:CDS |
| GAAGTATTCTCTCTTGTGTT+TGG | 0.369857 | 5.3:-70078178 | None:intergenic |
| CTCTTTGGCAGACGTCCTTT+CGG | 0.373249 | 5.3:+70078149 | MS.gene37867:CDS |
| AGCCAAGTCGACTTTGAGTT+CGG | 0.388833 | 5.3:-70076138 | None:intergenic |
| TTGGAAATGTTGGTTTAGTC+AGG | 0.406517 | 5.3:+70077039 | MS.gene37867:CDS |
| GAGCAAATTGTTAATACATC+TGG | 0.408334 | 5.3:-70079021 | None:intergenic |
| GCCAAGTCGACTTTGAGTTC+GGG | 0.433487 | 5.3:-70076137 | None:intergenic |
| TTGGCTAAACTATGTATAGA+TGG | 0.433518 | 5.3:+70076155 | MS.gene37867:CDS |
| AAGTTATCTTGTTCTCCGAC+TGG | 0.450502 | 5.3:-70075998 | None:intergenic |
| CGACAGGATTCGTTGAGACT+TGG | 0.461214 | 5.3:+70077020 | MS.gene37867:CDS |
| TTCAAAGGCTACGGGACAAA+AGG | 0.477251 | 5.3:+70076983 | MS.gene37867:intron |
| TGATGAGATCCATCCGCATA+TGG | 0.478106 | 5.3:-70079121 | None:intergenic |
| TCCCACAGACAAGCAAAAGT+TGG | 0.493142 | 5.3:-70076042 | None:intergenic |
| CCAACCGACTTGGTCTTCAC+TGG | 0.498614 | 5.3:-70076072 | None:intergenic |
| AGGAAGGCGAAGTTATAACT+TGG | 0.500668 | 5.3:+70076204 | MS.gene37867:CDS |
| GTGGAAAACAGGTTGATGTC+TGG | 0.502498 | 5.3:+70078099 | MS.gene37867:intron |
| CTCTAGTTATCCAACCGACT+TGG | 0.509075 | 5.3:-70076082 | None:intergenic |
| TCGTTGAGACTTGGAAATGT+TGG | 0.515084 | 5.3:+70077029 | MS.gene37867:CDS |
| AATAATCATGGAAGCAAGGA+TGG | 0.515749 | 5.3:+70075887 | None:intergenic |
| TACTGTTTCTTATAAGGCAA+AGG | 0.521677 | 5.3:+70078250 | MS.gene37867:CDS |
| ATACATCTGGTCTCTCCACC+TGG | 0.526381 | 5.3:-70079008 | None:intergenic |
| GGAAAGGCTAAAAGTACGAC+AGG | 0.531383 | 5.3:+70077004 | MS.gene37867:CDS |
| CTTGGGAGGGGCTGAAGCAT+CGG | 0.538667 | 5.3:+70076222 | MS.gene37867:CDS |
| GGATCCTCCCTCACCGGAGT+CGG | 0.542995 | 5.3:-70076021 | None:intergenic |
| AGTTATCTTGTTCTCCGACT+GGG | 0.552936 | 5.3:-70075997 | None:intergenic |
| TTTGTATCTCACTTACTCAA+AGG | 0.560755 | 5.3:+70079048 | MS.gene37867:CDS |
| GGCGAAGTTATAACTTGGGA+GGG | 0.566545 | 5.3:+70076209 | MS.gene37867:CDS |
| ACCCGAACTCAAAGTCGACT+TGG | 0.568274 | 5.3:+70076136 | MS.gene37867:CDS |
| ATAACTTCCGACTCCGGTGA+GGG | 0.570022 | 5.3:+70076014 | MS.gene37867:CDS |
| AAAGTTGGATCCTCCCTCAC+CGG | 0.571306 | 5.3:-70076027 | None:intergenic |
| CATCGGTTGCTTAAATGCTA+CGG | 0.572062 | 5.3:+70076239 | MS.gene37867:CDS |
| TAAGAAACAGTAGGTCTAGA+GGG | 0.576467 | 5.3:-70078239 | None:intergenic |
| CCAGTGAAGACCAAGTCGGT+TGG | 0.577539 | 5.3:+70076072 | MS.gene37867:CDS |
| AACAAGATAACTTCCGACTC+CGG | 0.578135 | 5.3:+70076008 | MS.gene37867:CDS |
| ATAAGAAACAGTAGGTCTAG+AGG | 0.589836 | 5.3:-70078240 | None:intergenic |
| AATAGTGATGTTCATTGACA+TGG | 0.591584 | 5.3:+70079071 | MS.gene37867:CDS |
| TGAACGCAGACTCATAGCTA+TGG | 0.591604 | 5.3:+70075917 | MS.gene37867:CDS |
| CACCAAAAGCCATATGCGGA+TGG | 0.593148 | 5.3:+70079112 | MS.gene37867:CDS |
| AAGGCGTTGATTGAAGAGGA+AGG | 0.595586 | 5.3:+70076188 | MS.gene37867:CDS |
| GCGGTGTCTTACATATGACC+AGG | 0.599131 | 5.3:+70078990 | MS.gene37867:CDS |
| GGTTGCTTAAATGCTACGGC+AGG | 0.600871 | 5.3:+70076243 | MS.gene37867:CDS |
| ATATCCGTTTCAAAGGCTAC+GGG | 0.602374 | 5.3:+70076975 | MS.gene37867:intron |
| TTTGCCTTATAAGAAACAGT+AGG | 0.610200 | 5.3:-70078248 | None:intergenic |
| TTTCAAGGCGTTGATTGAAG+AGG | 0.611886 | 5.3:+70076184 | MS.gene37867:CDS |
| GGAAGGCGAAGTTATAACTT+GGG | 0.613787 | 5.3:+70076205 | MS.gene37867:CDS |
| TGTGTTTGGTCATGTCCGAA+AGG | 0.620138 | 5.3:-70078164 | None:intergenic |
| AGGCTACGGGACAAAAGGAA+AGG | 0.623041 | 5.3:+70076988 | MS.gene37867:intron |
| ACTTCCGACTCCGGTGAGGG+AGG | 0.628680 | 5.3:+70076017 | MS.gene37867:CDS |
| AGGCGAAGTTATAACTTGGG+AGG | 0.632268 | 5.3:+70076208 | MS.gene37867:CDS |
| GTCAGCAAAAGTCTCCCAGT+CGG | 0.652082 | 5.3:+70075983 | MS.gene37867:CDS |
| GCGAAGTTATAACTTGGGAG+GGG | 0.657194 | 5.3:+70076210 | MS.gene37867:CDS |
| GATAACTTCCGACTCCGGTG+AGG | 0.666219 | 5.3:+70076013 | MS.gene37867:CDS |
| AGTCGGTTGGATAACTAGAG+CGG | 0.689385 | 5.3:+70076085 | MS.gene37867:CDS |
| TTCTCCAGTGAAGACCAAGT+CGG | 0.701027 | 5.3:+70076068 | MS.gene37867:CDS |
| GTGTCTTACATATGACCAGG+TGG | 0.729050 | 5.3:+70078993 | MS.gene37867:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAACTAATAAATATAATTA+AGG | - | chr5.3:70077314-70077333 | None:intergenic | 10.0% |
| !! | TAGATTATTATTAAGATTTA+GGG | + | chr5.3:70076330-70076349 | MS.gene37867:intron | 10.0% |
| !! | AATGTCTTAACTAATTATTA+GGG | + | chr5.3:70076282-70076301 | MS.gene37867:intron | 15.0% |
| !! | ACTAATAAATATAATTAAGG+AGG | - | chr5.3:70077311-70077330 | None:intergenic | 15.0% |
| !! | AGATTATTATTAAGATTTAG+GGG | + | chr5.3:70076331-70076350 | MS.gene37867:intron | 15.0% |
| !! | GTAGATTATTATTAAGATTT+AGG | + | chr5.3:70076329-70076348 | MS.gene37867:intron | 15.0% |
| !! | TAATATAAGTAAATGAAAGA+TGG | - | chr5.3:70078328-70078347 | None:intergenic | 15.0% |
| !! | TATATTATTCTATTGTTTAG+TGG | + | chr5.3:70078341-70078360 | MS.gene37867:intron | 15.0% |
| !!! | AAATAAAAAGGTACTATATT+TGG | - | chr5.3:70078898-70078917 | None:intergenic | 15.0% |
| !!! | ATATTGATTATTATGTAAGA+TGG | - | chr5.3:70078059-70078078 | None:intergenic | 15.0% |
| !!! | TAAACTAGAAATTTTGAATT+CGG | + | chr5.3:70076835-70076854 | MS.gene37867:intron | 15.0% |
| !!! | TTAAACCAACATAATTTTAA+TGG | - | chr5.3:70078494-70078513 | None:intergenic | 15.0% |
| !!! | TTTAAAATATAATGAAGTAG+TGG | + | chr5.3:70076583-70076602 | MS.gene37867:intron | 15.0% |
| !! | AAAAATATTCACATTTCATC+CGG | + | chr5.3:70076909-70076928 | MS.gene37867:intron | 20.0% |
| !! | AAACCATAATAATCTTTCTT+AGG | + | chr5.3:70078606-70078625 | MS.gene37867:intron | 20.0% |
| !! | CAAATTCAGATAAATTATGA+AGG | - | chr5.3:70078445-70078464 | None:intergenic | 20.0% |
| !! | GAATGCAGATAAAAATAAAA+AGG | - | chr5.3:70078910-70078929 | None:intergenic | 20.0% |
| !! | GAATGTCTTAACTAATTATT+AGG | + | chr5.3:70076281-70076300 | MS.gene37867:intron | 20.0% |
| !! | TTATTAAACCAAATGTAGAA+AGG | - | chr5.3:70077883-70077902 | None:intergenic | 20.0% |
| !!! | AAAGATTATTATGGTTTTGT+CGG | - | chr5.3:70078603-70078622 | None:intergenic | 20.0% |
| !!! | AACTATTGATTGGAAATTAA+TGG | - | chr5.3:70078834-70078853 | None:intergenic | 20.0% |
| !!! | AATATTGTCAGGATTTTATT+TGG | + | chr5.3:70078968-70078987 | MS.gene37867:intron | 20.0% |
| !!! | TTAATCTAGCTTAAAGAAAT+GGG | + | chr5.3:70078702-70078721 | MS.gene37867:intron | 20.0% |
| !!! | TTGATTATTAATTTTAGAGC+TGG | + | chr5.3:70077125-70077144 | MS.gene37867:intron | 20.0% |
| !!! | TTTATTTTGGTATTCTTAGT+GGG | + | chr5.3:70077102-70077121 | MS.gene37867:intron | 20.0% |
| !!! | TTTCTAGTTTATTTTTGTTG+TGG | - | chr5.3:70076826-70076845 | None:intergenic | 20.0% |
| !!! | TTTTATTTTGGTATTCTTAG+TGG | + | chr5.3:70077101-70077120 | MS.gene37867:intron | 20.0% |
| ! | AAAATAATCAACACAGAGAA+AGG | - | chr5.3:70076490-70076509 | None:intergenic | 25.0% |
| ! | AAGCCTAAGAAAGATTATTA+TGG | - | chr5.3:70078612-70078631 | None:intergenic | 25.0% |
| ! | AGTGCTATATTCAAAACTAA+CGG | + | chr5.3:70078788-70078807 | MS.gene37867:intron | 25.0% |
| ! | ATTAAGATTTAGGGGTTAAA+AGG | + | chr5.3:70076339-70076358 | MS.gene37867:intron | 25.0% |
| ! | ATTATTCTATTGTTTAGTGG+TGG | + | chr5.3:70078344-70078363 | MS.gene37867:intron | 25.0% |
| ! | ATTGGTGCAAAATAAATACA+AGG | - | chr5.3:70077240-70077259 | None:intergenic | 25.0% |
| ! | CATTTCTTTAAGCTAGATTA+AGG | - | chr5.3:70078703-70078722 | None:intergenic | 25.0% |
| ! | GGAGAATTATAACTATTGAT+TGG | - | chr5.3:70078844-70078863 | None:intergenic | 25.0% |
| ! | TATATTCTCTGCAAAATACA+AGG | - | chr5.3:70076936-70076955 | None:intergenic | 25.0% |
| ! | TATGTGAAATGAATTCAGAT+GGG | + | chr5.3:70077551-70077570 | MS.gene37867:intron | 25.0% |
| ! | TTATGTGAAATGAATTCAGA+TGG | + | chr5.3:70077550-70077569 | MS.gene37867:intron | 25.0% |
| ! | TTGGTGCAAAATAAATACAA+GGG | - | chr5.3:70077239-70077258 | None:intergenic | 25.0% |
| ! | TTGTACTCCAAAATAAGTTA+AGG | + | chr5.3:70076688-70076707 | MS.gene37867:intron | 25.0% |
| !! | CATACGAAATGTGAATATTT+TGG | - | chr5.3:70076749-70076768 | None:intergenic | 25.0% |
| !! | CTTAATCTAGCTTAAAGAAA+TGG | + | chr5.3:70078701-70078720 | MS.gene37867:intron | 25.0% |
| !! | TAATCTAGCTTAAAGAAATG+GGG | + | chr5.3:70078703-70078722 | MS.gene37867:intron | 25.0% |
| !!! | AAAGGTACTATATTTGGATT+TGG | - | chr5.3:70078892-70078911 | None:intergenic | 25.0% |
| !!! | AATTTTACATTTCTGACTTG+TGG | + | chr5.3:70078080-70078099 | MS.gene37867:intron | 25.0% |
| !!! | ATATTTTTATGCATGACACA+TGG | - | chr5.3:70076897-70076916 | None:intergenic | 25.0% |
| !!! | TATTAGTTTGTTCCTAGAAA+AGG | + | chr5.3:70077324-70077343 | MS.gene37867:intron | 25.0% |
| !!! | TTATTTTTATGCATGACACA+TGG | - | chr5.3:70076720-70076739 | None:intergenic | 25.0% |
| !!! | TTGTATTTATTTTGCACCAA+TGG | + | chr5.3:70077239-70077258 | MS.gene37867:intron | 25.0% |
| AACATAAGCATGCTTATATC+TGG | - | chr5.3:70078665-70078684 | None:intergenic | 30.0% | |
| AAGCTAAAAACCAACAAGTT+TGG | - | chr5.3:70077827-70077846 | None:intergenic | 30.0% | |
| AATAGTGATGTTCATTGACA+TGG | + | chr5.3:70079071-70079090 | MS.gene37867:CDS | 30.0% | |
| AATCGAAAAAGAAAAGGCAA+AGG | - | chr5.3:70077911-70077930 | None:intergenic | 30.0% | |
| ACATAAGCATGCTTATATCT+GGG | - | chr5.3:70078664-70078683 | None:intergenic | 30.0% | |
| ACGTGTATTCAAGACTTAAA+AGG | - | chr5.3:70078001-70078020 | None:intergenic | 30.0% | |
| ACTTAAAAGGTTATTGACCT+TGG | - | chr5.3:70077988-70078007 | None:intergenic | 30.0% | |
| AGGCAGTAATTACTAGAAAA+GGG | - | chr5.3:70078286-70078305 | None:intergenic | 30.0% | |
| ATATATATGACACACACACA+AGG | + | chr5.3:70077368-70077387 | MS.gene37867:intron | 30.0% | |
| ATTCCATGTCCAAGTATAAT+TGG | + | chr5.3:70078419-70078438 | MS.gene37867:intron | 30.0% | |
| ATTGTGTGAACAATATTGTC+AGG | + | chr5.3:70078957-70078976 | MS.gene37867:intron | 30.0% | |
| CACAACCAATAATTTCTCAT+TGG | - | chr5.3:70078536-70078555 | None:intergenic | 30.0% | |
| CGTTGCCATTAAAATTATGT+TGG | + | chr5.3:70078486-70078505 | MS.gene37867:intron | 30.0% | |
| GAGCAAATTGTTAATACATC+TGG | - | chr5.3:70079024-70079043 | None:intergenic | 30.0% | |
| GATATAAGCATGCTTATGTT+TGG | + | chr5.3:70078665-70078684 | MS.gene37867:intron | 30.0% | |
| GTCTTAACTAATTATTAGGG+TGG | + | chr5.3:70076285-70076304 | MS.gene37867:intron | 30.0% | |
| TCAAAATGATGAATGCTACT+CGG | - | chr5.3:70078865-70078884 | None:intergenic | 30.0% | |
| TCATACCATGTCACAAATTA+TGG | - | chr5.3:70077418-70077437 | None:intergenic | 30.0% | |
| TCGTACTCCAAAATAAGTTA+AGG | + | chr5.3:70076865-70076884 | MS.gene37867:intron | 30.0% | |
| TCTTGAAGACACGATTATTA+AGG | + | chr5.3:70078199-70078218 | MS.gene37867:CDS | 30.0% | |
| TGGTGCAAAATAAATACAAG+GGG | - | chr5.3:70077238-70077257 | None:intergenic | 30.0% | |
| TTATGAAGGCCAATTATACT+TGG | - | chr5.3:70078431-70078450 | None:intergenic | 30.0% | |
| TTGCACCAATGAGAAATTAT+TGG | + | chr5.3:70078528-70078547 | MS.gene37867:intron | 30.0% | |
| TTGGCTAAACTATGTATAGA+TGG | + | chr5.3:70076155-70076174 | MS.gene37867:CDS | 30.0% | |
| TTTGCCTTATAAGAAACAGT+AGG | - | chr5.3:70078251-70078270 | None:intergenic | 30.0% | |
| TTTGTATCTCACTTACTCAA+AGG | + | chr5.3:70079048-70079067 | MS.gene37867:CDS | 30.0% | |
| ! | GAATGCTCCTTAACTTATTT+TGG | - | chr5.3:70076698-70076717 | None:intergenic | 30.0% |
| ! | TACTGTTTCTTATAAGGCAA+AGG | + | chr5.3:70078250-70078269 | MS.gene37867:CDS | 30.0% |
| ! | TAGACCTACTGTTTCTTATA+AGG | + | chr5.3:70078244-70078263 | MS.gene37867:CDS | 30.0% |
| ! | TTAAGCCATAATTTGTGACA+TGG | + | chr5.3:70077410-70077429 | MS.gene37867:intron | 30.0% |
| ! | TTGAAGAATGTTTTTCTTCG+TGG | + | chr5.3:70077711-70077730 | MS.gene37867:intron | 30.0% |
| ! | TTTTGTCGGTGAAAATAAGA+AGG | - | chr5.3:70078589-70078608 | None:intergenic | 30.0% |
| !! | ACACAATCTTTGCTTGTTTT+GGG | + | chr5.3:70078367-70078386 | MS.gene37867:intron | 30.0% |
| !! | ATTGTCAGGATTTTATTTGG+CGG | + | chr5.3:70078971-70078990 | MS.gene37867:intron | 30.0% |
| !! | ATTTTAATGGCAACGTGATA+TGG | - | chr5.3:70078481-70078500 | None:intergenic | 30.0% |
| AACGGATGCAATTAGAAAAC+AGG | - | chr5.3:70076462-70076481 | None:intergenic | 35.0% | |
| ACGGATGCAATTAGAAAACA+GGG | - | chr5.3:70076461-70076480 | None:intergenic | 35.0% | |
| ACTAATTATTAGGGTGGTTG+TGG | + | chr5.3:70076291-70076310 | MS.gene37867:intron | 35.0% | |
| AGTTGTCATTGCACTTCATA+CGG | - | chr5.3:70078735-70078754 | None:intergenic | 35.0% | |
| ATAAGAAACAGTAGGTCTAG+AGG | - | chr5.3:70078243-70078262 | None:intergenic | 35.0% | |
| ATATTCCTGCTTGTTTCCTA+AGG | - | chr5.3:70077608-70077627 | None:intergenic | 35.0% | |
| ATCATACTTGCAAGTACCAT+TGG | - | chr5.3:70077258-70077277 | None:intergenic | 35.0% | |
| ATTGATACTCTCTGTGCTTT+GGG | + | chr5.3:70076371-70076390 | MS.gene37867:intron | 35.0% | |
| CAAAATGACAATTGTTCGCA+TGG | + | chr5.3:70077663-70077682 | MS.gene37867:intron | 35.0% | |
| CAGGCAGTAATTACTAGAAA+AGG | - | chr5.3:70078287-70078306 | None:intergenic | 35.0% | |
| CCTGGAAATCGAAAAAGAAA+AGG | - | chr5.3:70077917-70077936 | None:intergenic | 35.0% | |
| GGCAGTAATTACTAGAAAAG+GGG | - | chr5.3:70078285-70078304 | None:intergenic | 35.0% | |
| TAAATACAAGGGGAAGAAAG+AGG | - | chr5.3:70077228-70077247 | None:intergenic | 35.0% | |
| TAAGAAACAGTAGGTCTAGA+GGG | - | chr5.3:70078242-70078261 | None:intergenic | 35.0% | |
| TCAAACTGTTCCAAACTTGT+TGG | + | chr5.3:70077814-70077833 | MS.gene37867:intron | 35.0% | |
| TCACATTTCGTATGAAGTAG+TGG | + | chr5.3:70076755-70076774 | MS.gene37867:intron | 35.0% | |
| TGCTCTCTATAGCTATCAAA+TGG | + | chr5.3:70077686-70077705 | MS.gene37867:intron | 35.0% | |
| TTAGGAAACAAGCAGGAATA+TGG | + | chr5.3:70077607-70077626 | MS.gene37867:intron | 35.0% | |
| TTGATGCTCCTTTCTACATT+TGG | + | chr5.3:70077872-70077891 | MS.gene37867:intron | 35.0% | |
| TTTGCTGATATCCGTTTCAA+AGG | + | chr5.3:70076968-70076987 | MS.gene37867:intron | 35.0% | |
| ! | ATTTCTGACTTGTGGAAAAC+AGG | + | chr5.3:70078088-70078107 | MS.gene37867:intron | 35.0% |
| ! | GAAGTATTCTCTCTTGTGTT+TGG | - | chr5.3:70078181-70078200 | None:intergenic | 35.0% |
| ! | GACACAATCTTTGCTTGTTT+TGG | + | chr5.3:70078366-70078385 | MS.gene37867:intron | 35.0% |
| ! | GAGTAGCATTCATCATTTTG+AGG | + | chr5.3:70078864-70078883 | MS.gene37867:intron | 35.0% |
| ! | TAGTTCGTCTGGGATTTATT+CGG | + | chr5.3:70077465-70077484 | MS.gene37867:intron | 35.0% |
| !! | ACAGAGAGTATCAATCCTAA+TGG | - | chr5.3:70076366-70076385 | None:intergenic | 35.0% |
| !! | ATGTTGGTTTAGTCAGGTAT+AGG | + | chr5.3:70077045-70077064 | MS.gene37867:intron | 35.0% |
| !! | CAGAGAGTATCAATCCTAAT+GGG | - | chr5.3:70076365-70076384 | None:intergenic | 35.0% |
| !! | CATGCGAACAATTGTCATTT+TGG | - | chr5.3:70077665-70077684 | None:intergenic | 35.0% |
| !! | TTGGAAATGTTGGTTTAGTC+AGG | + | chr5.3:70077039-70077058 | MS.gene37867:CDS | 35.0% |
| !!! | CCTTTTCTTTTTCGATTTCC+AGG | + | chr5.3:70077914-70077933 | MS.gene37867:intron | 35.0% |
| AACAAGATAACTTCCGACTC+CGG | + | chr5.3:70076008-70076027 | MS.gene37867:CDS | 40.0% | |
| AACTGTCTTAACTGAGACCT+GGG | + | chr5.3:70077148-70077167 | MS.gene37867:intron | 40.0% | |
| AAGAGGTTAGACATACAAGC+TGG | - | chr5.3:70077211-70077230 | None:intergenic | 40.0% | |
| AAGTTATCTTGTTCTCCGAC+TGG | - | chr5.3:70076001-70076020 | None:intergenic | 40.0% | |
| AATACACTCATTTGCAGCCA+TGG | - | chr5.3:70077532-70077551 | None:intergenic | 40.0% | |
| ACACAGAGAAAGGCAAGAAA+CGG | - | chr5.3:70076480-70076499 | None:intergenic | 40.0% | |
| ACCAATATGTTCCAGCACTT+TGG | - | chr5.3:70077759-70077778 | None:intergenic | 40.0% | |
| AGGAAGGCGAAGTTATAACT+TGG | + | chr5.3:70076204-70076223 | MS.gene37867:CDS | 40.0% | |
| AGGCCAATTATACTTGGACA+TGG | - | chr5.3:70078425-70078444 | None:intergenic | 40.0% | |
| AGTTATCTTGTTCTCCGACT+GGG | - | chr5.3:70076000-70076019 | None:intergenic | 40.0% | |
| ATACACTCATTTGCAGCCAT+GGG | - | chr5.3:70077531-70077550 | None:intergenic | 40.0% | |
| ATATCCGTTTCAAAGGCTAC+GGG | + | chr5.3:70076975-70076994 | MS.gene37867:intron | 40.0% | |
| CCAATATGTTCCAGCACTTT+GGG | - | chr5.3:70077758-70077777 | None:intergenic | 40.0% | |
| CGAAAAAGAAAAGGCAAAGG+AGG | - | chr5.3:70077908-70077927 | None:intergenic | 40.0% | |
| GATATCCGTTTCAAAGGCTA+CGG | + | chr5.3:70076974-70076993 | MS.gene37867:intron | 40.0% | |
| GATTGATACTCTCTGTGCTT+TGG | + | chr5.3:70076370-70076389 | MS.gene37867:intron | 40.0% | |
| GCCAAAGAACAATTAGCAAC+AGG | - | chr5.3:70078306-70078325 | None:intergenic | 40.0% | |
| GCCTGTTGCTAATTGTTCTT+TGG | + | chr5.3:70078302-70078321 | MS.gene37867:intron | 40.0% | |
| GGAAGGCGAAGTTATAACTT+GGG | + | chr5.3:70076205-70076224 | MS.gene37867:CDS | 40.0% | |
| GTGGTGAAGATCATTGTTGT+AGG | + | chr5.3:70077781-70077800 | MS.gene37867:intron | 40.0% | |
| TCGTTGAGACTTGGAAATGT+TGG | + | chr5.3:70077029-70077048 | MS.gene37867:CDS | 40.0% | |
| TCTCTGCAAAATACAAGGAC+CGG | - | chr5.3:70076931-70076950 | None:intergenic | 40.0% | |
| TGCTGGAACATATTGGTAAG+TGG | + | chr5.3:70077762-70077781 | MS.gene37867:intron | 40.0% | |
| TGTGAGATCTTAGTTCGTCT+GGG | + | chr5.3:70077455-70077474 | MS.gene37867:intron | 40.0% | |
| TTAATGGCAACGTGATATGG+AGG | - | chr5.3:70078478-70078497 | None:intergenic | 40.0% | |
| TTGACCTTGGATGATATGAG+AGG | - | chr5.3:70077975-70077994 | None:intergenic | 40.0% | |
| TTGCTCTATCAAACGCTCTT+TGG | + | chr5.3:70078134-70078153 | MS.gene37867:CDS | 40.0% | |
| TTGGTTTAGTCAGGTATAGG+TGG | + | chr5.3:70077048-70077067 | MS.gene37867:intron | 40.0% | |
| ! | AAATCAGAGTCGCCTTTTCT+AGG | - | chr5.3:70077339-70077358 | None:intergenic | 40.0% |
| ! | ATCCAACTTTTGCTTGTCTG+TGG | + | chr5.3:70076040-70076059 | MS.gene37867:CDS | 40.0% |
| ! | CAACCAATCAAGCCTTGTAA+TGG | - | chr5.3:70077585-70077604 | None:intergenic | 40.0% |
| ! | CATCGGTTGCTTAAATGCTA+CGG | + | chr5.3:70076239-70076258 | MS.gene37867:CDS | 40.0% |
| ! | TATAGATGGCGACGTTTTCA+AGG | + | chr5.3:70076169-70076188 | MS.gene37867:CDS | 40.0% |
| ! | TCCAACTTTTGCTTGTCTGT+GGG | + | chr5.3:70076041-70076060 | MS.gene37867:CDS | 40.0% |
| !! | TTTCAAGGCGTTGATTGAAG+AGG | + | chr5.3:70076184-70076203 | MS.gene37867:CDS | 40.0% |
| AGCACCTCTCATATCATCCA+AGG | + | chr5.3:70077968-70077987 | MS.gene37867:intron | 45.0% | |
| AGCCATGGGTTTGATATCAG+GGG | - | chr5.3:70077517-70077536 | None:intergenic | 45.0% | |
| AGGCGAAGTTATAACTTGGG+AGG | + | chr5.3:70076208-70076227 | MS.gene37867:CDS | 45.0% | |
| AGTCGGTTGGATAACTAGAG+CGG | + | chr5.3:70076085-70076104 | MS.gene37867:CDS | 45.0% | |
| ATCTTTCTTAGGCTTGAGCG+CGG | + | chr5.3:70078617-70078636 | MS.gene37867:intron | 45.0% | |
| CAGCCATGGGTTTGATATCA+GGG | - | chr5.3:70077518-70077537 | None:intergenic | 45.0% | |
| CAGCCATTACAAGGCTTGAT+TGG | + | chr5.3:70077579-70077598 | MS.gene37867:intron | 45.0% | |
| CTCTAGTTATCCAACCGACT+TGG | - | chr5.3:70076085-70076104 | None:intergenic | 45.0% | |
| CTGTGAGATCTTAGTTCGTC+TGG | + | chr5.3:70077454-70077473 | MS.gene37867:intron | 45.0% | |
| GAACTGTCTTAACTGAGACC+TGG | + | chr5.3:70077147-70077166 | MS.gene37867:intron | 45.0% | |
| GCGAAGTTATAACTTGGGAG+GGG | + | chr5.3:70076210-70076229 | MS.gene37867:CDS | 45.0% | |
| GGCGAAGTTATAACTTGGGA+GGG | + | chr5.3:70076209-70076228 | MS.gene37867:CDS | 45.0% | |
| GTGTCTTACATATGACCAGG+TGG | + | chr5.3:70078993-70079012 | MS.gene37867:CDS | 45.0% | |
| GTTCTTACATCCCAAAGTGC+TGG | + | chr5.3:70077745-70077764 | MS.gene37867:intron | 45.0% | |
| GTTTGATATCAGGGGGACAA+GGG | - | chr5.3:70077509-70077528 | None:intergenic | 45.0% | |
| TAACACCAAGTCATCTTCCC+AGG | - | chr5.3:70077168-70077187 | None:intergenic | 45.0% | |
| TAGGGGTTAAAAGGCCCATT+AGG | + | chr5.3:70076348-70076367 | MS.gene37867:intron | 45.0% | |
| TCCCACAGACAAGCAAAAGT+TGG | - | chr5.3:70076045-70076064 | None:intergenic | 45.0% | |
| TGAACGCAGACTCATAGCTA+TGG | + | chr5.3:70075917-70075936 | MS.gene37867:CDS | 45.0% | |
| TGATGAGATCCATCCGCATA+TGG | - | chr5.3:70079124-70079143 | None:intergenic | 45.0% | |
| TGTGTTTGGTCATGTCCGAA+AGG | - | chr5.3:70078167-70078186 | None:intergenic | 45.0% | |
| TTCAAAGGCTACGGGACAAA+AGG | + | chr5.3:70076983-70077002 | MS.gene37867:intron | 45.0% | |
| TTCTCCAGTGAAGACCAAGT+CGG | + | chr5.3:70076068-70076087 | MS.gene37867:CDS | 45.0% | |
| ! | AAGGCTTGATTGGTTGCCTT+AGG | + | chr5.3:70077589-70077608 | MS.gene37867:intron | 45.0% |
| ! | AGCCAAGTCGACTTTGAGTT+CGG | - | chr5.3:70076141-70076160 | None:intergenic | 45.0% |
| ! | ATCAAGCCTTGTAATGGCTG+AGG | - | chr5.3:70077579-70077598 | None:intergenic | 45.0% |
| ! | ATCCATCCGCATATGGCTTT+TGG | - | chr5.3:70079117-70079136 | None:intergenic | 45.0% |
| ! | ATCCGCATATGGCTTTTGGT+GGG | - | chr5.3:70079113-70079132 | None:intergenic | 45.0% |
| ! | GGAAAGGCTAAAAGTACGAC+AGG | + | chr5.3:70077004-70077023 | MS.gene37867:CDS | 45.0% |
| ! | TCAAGCCTTGTAATGGCTGA+GGG | - | chr5.3:70077578-70077597 | None:intergenic | 45.0% |
| ! | TTGTCCCGTAGCCTTTGAAA+CGG | - | chr5.3:70076982-70077001 | None:intergenic | 45.0% |
| !! | AAGGCGTTGATTGAAGAGGA+AGG | + | chr5.3:70076188-70076207 | MS.gene37867:CDS | 45.0% |
| !! | CCCAAAGTGCTGGAACATAT+TGG | + | chr5.3:70077755-70077774 | MS.gene37867:intron | 45.0% |
| !! | GTGGAAAACAGGTTGATGTC+TGG | + | chr5.3:70078099-70078118 | MS.gene37867:intron | 45.0% |
| !! | TATTATTATTAATAGAAAAA+AGG | - | chr5.3:70076436-70076455 | None:intergenic | 5.0% |
| !!! | TTTTCATAATAATTTTATTT+TGG | + | chr5.3:70077089-70077108 | MS.gene37867:intron | 5.0% |
| AAAGTTGGATCCTCCCTCAC+CGG | - | chr5.3:70076030-70076049 | None:intergenic | 50.0% | |
| ACCCGAACTCAAAGTCGACT+TGG | + | chr5.3:70076136-70076155 | MS.gene37867:CDS | 50.0% | |
| AGGCTACGGGACAAAAGGAA+AGG | + | chr5.3:70076988-70077007 | MS.gene37867:intron | 50.0% | |
| ATAACTTCCGACTCCGGTGA+GGG | + | chr5.3:70076014-70076033 | MS.gene37867:CDS | 50.0% | |
| ATACATCTGGTCTCTCCACC+TGG | - | chr5.3:70079011-70079030 | None:intergenic | 50.0% | |
| CACCAAAAGCCATATGCGGA+TGG | + | chr5.3:70079112-70079131 | MS.gene37867:CDS | 50.0% | |
| CGACAGGATTCGTTGAGACT+TGG | + | chr5.3:70077020-70077039 | MS.gene37867:CDS | 50.0% | |
| CTCTTTGGCAGACGTCCTTT+CGG | + | chr5.3:70078149-70078168 | MS.gene37867:CDS | 50.0% | |
| GCAGCCATGGGTTTGATATC+AGG | - | chr5.3:70077519-70077538 | None:intergenic | 50.0% | |
| GCATTCAGGAGGCAAATACC+TGG | - | chr5.3:70077935-70077954 | None:intergenic | 50.0% | |
| GCCATGGGTTTGATATCAGG+GGG | - | chr5.3:70077516-70077535 | None:intergenic | 50.0% | |
| GCGGTGTCTTACATATGACC+AGG | + | chr5.3:70078990-70079009 | MS.gene37867:CDS | 50.0% | |
| GGTTGCCTTAGGAAACAAGC+AGG | + | chr5.3:70077600-70077619 | MS.gene37867:intron | 50.0% | |
| GGTTGCTTAAATGCTACGGC+AGG | + | chr5.3:70076243-70076262 | MS.gene37867:CDS | 50.0% | |
| GGTTTGATATCAGGGGGACA+AGG | - | chr5.3:70077510-70077529 | None:intergenic | 50.0% | |
| GTCAGCAAAAGTCTCCCAGT+CGG | + | chr5.3:70075983-70076002 | MS.gene37867:CDS | 50.0% | |
| TCCCCCTGATATCAAACCCA+TGG | + | chr5.3:70077512-70077531 | MS.gene37867:intron | 50.0% | |
| TGAGACCTGGGAAGATGACT+TGG | + | chr5.3:70077160-70077179 | MS.gene37867:intron | 50.0% | |
| ! | CATCCGCATATGGCTTTTGG+TGG | - | chr5.3:70079114-70079133 | None:intergenic | 50.0% |
| ! | GCCAAGTCGACTTTGAGTTC+GGG | - | chr5.3:70076140-70076159 | None:intergenic | 50.0% |
| ! | TCCGCATATGGCTTTTGGTG+GGG | - | chr5.3:70079112-70079131 | None:intergenic | 50.0% |
| ! | TTGCTGCGCTCAAAGCATTC+AGG | - | chr5.3:70077949-70077968 | None:intergenic | 50.0% |
| !! | GTATAGGTGGAGCACTGTGA+CGG | + | chr5.3:70077061-70077080 | MS.gene37867:intron | 50.0% |
| !! | TCTCTGTGCTTTGGGAGTTC+AGG | + | chr5.3:70076379-70076398 | MS.gene37867:intron | 50.0% |
| CCAGTGAAGACCAAGTCGGT+TGG | + | chr5.3:70076072-70076091 | MS.gene37867:CDS | 55.0% | |
| CCCCCACCAAAAGCCATATG+CGG | + | chr5.3:70079108-70079127 | MS.gene37867:CDS | 55.0% | |
| CGGCAGGAGAAGTGAGTGAT+AGG | + | chr5.3:70076259-70076278 | MS.gene37867:intron | 55.0% | |
| GATAACTTCCGACTCCGGTG+AGG | + | chr5.3:70076013-70076032 | MS.gene37867:CDS | 55.0% | |
| GGGTGGTTGTGGCTAAGCAT+TGG | + | chr5.3:70076302-70076321 | MS.gene37867:intron | 55.0% | |
| TGGGTCCCTCAGCCATTACA+AGG | + | chr5.3:70077570-70077589 | MS.gene37867:intron | 55.0% | |
| ! | CCGCATATGGCTTTTGGTGG+GGG | - | chr5.3:70079111-70079130 | None:intergenic | 55.0% |
| ! | CGCATATGGCTTTTGGTGGG+GGG | - | chr5.3:70079110-70079129 | None:intergenic | 55.0% |
| ! | CTGCGCTCAAAGCATTCAGG+AGG | - | chr5.3:70077946-70077965 | None:intergenic | 55.0% |
| !! | CCAACCGACTTGGTCTTCAC+TGG | - | chr5.3:70076075-70076094 | None:intergenic | 55.0% |
| CTTGGGAGGGGCTGAAGCAT+CGG | + | chr5.3:70076222-70076241 | MS.gene37867:CDS | 60.0% | |
| GGGACAAGGGTGACTCAGTG+GGG | - | chr5.3:70077496-70077515 | None:intergenic | 60.0% | |
| GGGGACAAGGGTGACTCAGT+GGG | - | chr5.3:70077497-70077516 | None:intergenic | 60.0% | |
| ! | ATGGCTTTTGGTGGGGGGTG+AGG | - | chr5.3:70079105-70079124 | None:intergenic | 60.0% |
| ! | TGGCTTTTGGTGGGGGGTGA+GGG | - | chr5.3:70079104-70079123 | None:intergenic | 60.0% |
| ACTTCCGACTCCGGTGAGGG+AGG | + | chr5.3:70076017-70076036 | MS.gene37867:CDS | 65.0% | |
| GGATCCTCCCTCACCGGAGT+CGG | - | chr5.3:70076024-70076043 | None:intergenic | 65.0% | |
| GGGGGACAAGGGTGACTCAG+TGG | - | chr5.3:70077498-70077517 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 70075894 | 70079161 | 70075894 | ID=MS.gene37867 |
| chr5.3 | mRNA | 70075894 | 70079161 | 70075894 | ID=MS.gene37867.t1;Parent=MS.gene37867 |
| chr5.3 | exon | 70075894 | 70076269 | 70075894 | ID=MS.gene37867.t1.exon1;Parent=MS.gene37867.t1 |
| chr5.3 | CDS | 70075894 | 70076269 | 70075894 | ID=cds.MS.gene37867.t1;Parent=MS.gene37867.t1 |
| chr5.3 | exon | 70076990 | 70077060 | 70076990 | ID=MS.gene37867.t1.exon2;Parent=MS.gene37867.t1 |
| chr5.3 | CDS | 70076990 | 70077060 | 70076990 | ID=cds.MS.gene37867.t1;Parent=MS.gene37867.t1 |
| chr5.3 | exon | 70078110 | 70078271 | 70078110 | ID=MS.gene37867.t1.exon3;Parent=MS.gene37867.t1 |
| chr5.3 | CDS | 70078110 | 70078271 | 70078110 | ID=cds.MS.gene37867.t1;Parent=MS.gene37867.t1 |
| chr5.3 | exon | 70078979 | 70079161 | 70078979 | ID=MS.gene37867.t1.exon4;Parent=MS.gene37867.t1 |
| chr5.3 | CDS | 70078979 | 70079161 | 70078979 | ID=cds.MS.gene37867.t1;Parent=MS.gene37867.t1 |
| Gene Sequence |
| Protein sequence |
