AlfalfaGEDB | MS.gene37953

M. sativa cultivar XinJiangDaYe / MS.gene37953

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37953.t1	XP_024629356.1	34.7	747	87	4	1	361	1	732	2.10E-97	365.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37953.t1	Q9SZL8	31.2	189	127	2	6	191	69	257	6.2e-21	103.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37953.t1	A0A396H640	86.5	185	23	1	1	185	1	183	4.9e-88	334.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene37953.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37953.t1	MTR_5g039760	69.189	185	31	2	1	185	1	159	1.15e-85	257
MS.gene37953.t1	MTR_7g074790	65.476	168	39	2	1	168	1	149	1.87e-71	223
MS.gene37953.t1	MTR_7g074790	63.158	76	24	3	282	356	155	227	3.99e-21	91.3
MS.gene37953.t1	MTR_7g061980	69.167	120	36	1	1	120	1	119	2.75e-56	180
MS.gene37953.t1	MTR_0402s0040	43.750	160	86	4	10	167	26	183	1.66e-32	127
MS.gene37953.t1	MTR_3g058090	46.721	122	41	2	162	283	9	106	7.67e-25	97.4
MS.gene37953.t1	MTR_4g102720	32.911	158	71	3	7	164	4	126	5.52e-23	96.3
MS.gene37953.t1	MTR_4g069880	63.492	63	23	0	1	63	1	63	1.85e-22	90.1
MS.gene37953.t1	MTR_4g117620	74.000	50	13	0	307	356	27	76	3.90e-20	84.0
MS.gene37953.t1	MTR_5g015480	41.463	123	69	3	10	130	56	177	2.40e-19	87.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37953.t1	AT4G38180	31.217	189	127	2	6	191	69	257	7.07e-19	88.6
MS.gene37953.t1	AT5G18960	39.423	104	48	2	9	111	42	131	2.99e-13	71.6
MS.gene37953.t1	AT5G18960	39.423	104	48	2	9	111	42	131	2.99e-13	71.6
MS.gene37953.t1	AT3G06250	38.462	104	49	2	9	111	27	116	1.47e-12	69.3
MS.gene37953.t1	AT3G06250	38.462	104	49	2	9	111	27	116	1.47e-12	69.3
MS.gene37953.t1	AT3G06250	38.462	104	49	2	9	111	27	116	1.47e-12	69.3
MS.gene37953.t1	AT4G15090	27.329	161	114	3	3	162	44	202	6.93e-12	67.4
MS.gene37953.t1	AT4G15090	27.329	161	114	3	3	162	44	202	6.93e-12	67.4
MS.gene37953.t1	AT4G15090	27.329	161	114	3	3	162	44	202	6.93e-12	67.4
MS.gene37953.t1	AT4G15090	27.329	161	114	3	3	162	44	202	6.93e-12	67.4

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Find 69 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTTGATTGGAAGCCAA+AGG	0.556734	5.1:+76494715	MS.gene37953:CDS
AACTTATGAGCACACATGCA+GGG	0.592671	5.1:+76495149	MS.gene37953:CDS
AAGGAAGGGGTGAAGAGTAC+AGG	0.424745	5.1:+76494878	MS.gene37953:CDS
AAGGGATTCAAGAATCAACC+CGG	0.675754	5.1:+76496673	MS.gene37953:CDS
AATCTTGCACAATGCCATAA+CGG	0.499131	5.1:-76496408	None:intergenic
ACAAGCATATGAAATTGATA+TGG	0.409436	5.1:+76495090	MS.gene37953:CDS
ACACTTTCACTTTGTAGGAA+CGG	0.535912	5.1:+76494968	MS.gene37953:CDS
ACCTAAACAAAGAAGTGCAC+AGG	0.577644	5.1:+76496768	MS.gene37953:CDS
ACCTGTGCACTTCTTTGTTT+AGG	0.326471	5.1:-76496769	None:intergenic
ACGGCACTGTATCATCATGT+AGG	0.621980	5.1:+76494843	MS.gene37953:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAGCAAGTGGTCTAT+TGG	-	chr5.1:76495443-76495462	None:intergenic	30.0%
AAAATGGAGTCAAACATCTT+GGG	+	chr5.1:76495684-76495703	MS.gene37953:intron	30.0%
AACCAGAAAAAAAAAGCAAG+TGG	-	chr5.1:76495451-76495470	None:intergenic	30.0%
ATCACTAAGGAAAAACATGA+AGG	+	chr5.1:76496220-76496239	MS.gene37953:intron	30.0%
CGAAATGATTGAAGAATTCT+AGG	-	chr5.1:76495982-76496001	None:intergenic	30.0%
GAATTACACTTTCACTTTGT+AGG	+	chr5.1:76494963-76494982	MS.gene37953:CDS	30.0%
TAAAGGATTAACAGCTCATA+TGG	+	chr5.1:76496897-76496916	MS.gene37953:CDS	30.0%
TAATGTAGGATTTACAGAGA+AGG	+	chr5.1:76495180-76495199	MS.gene37953:CDS	30.0%
TATGTTCATCTAGAAACTCA+TGG	-	chr5.1:76495006-76495025	None:intergenic	30.0%
TGACATGCTAAAGAAAATGA+TGG	+	chr5.1:76496570-76496589	MS.gene37953:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	76494704	76497136	76494704	ID=MS.gene37953
chr5.1	mRNA	76494704	76497136	76494704	ID=MS.gene37953.t1;Parent=MS.gene37953
chr5.1	exon	76494704	76495204	76494704	ID=MS.gene37953.t1.exon1;Parent=MS.gene37953.t1
chr5.1	CDS	76494704	76495204	76494704	ID=cds.MS.gene37953.t1;Parent=MS.gene37953.t1
chr5.1	exon	76496364	76496789	76496364	ID=MS.gene37953.t1.exon2;Parent=MS.gene37953.t1
chr5.1	CDS	76496364	76496789	76496364	ID=cds.MS.gene37953.t1;Parent=MS.gene37953.t1
chr5.1	exon	76496895	76497005	76496895	ID=MS.gene37953.t1.exon3;Parent=MS.gene37953.t1
chr5.1	CDS	76496895	76497005	76496895	ID=cds.MS.gene37953.t1;Parent=MS.gene37953.t1
chr5.1	exon	76497089	76497136	76497089	ID=MS.gene37953.t1.exon4;Parent=MS.gene37953.t1
chr5.1	CDS	76497089	76497136	76497089	ID=cds.MS.gene37953.t1;Parent=MS.gene37953.t1

Gene Sequence

>MS.gene37953

ATGGCATCTACAAATGTTGATTGGAAGCCAAAGGTTGGAATGGGATTTGATAATATGGAAGAGGCTAAACAATTTTGGCTTGCTTATGGTTTACGTGTGGGCTTCGGAATTAGAGTACGTTTTACAAACAGGAAGAAAGACGGCACTGTATCATCATGTAGGTTCGTTTGTTGTAAGGAAGGGGTGAAGAGTACAGGGAACAAAAATGCATATGAAGGAAAATATGAGAGAGCTGATATTAGAACAAATTGCCTTGCAAGAATTACACTTTCACTTTGTAGGAACGGAAAGTTGGTCATCCATGAGTTTCTAGATGAACATAACCATGACCTACAAAATCCAGAGACTACACACATGCTTCGATCACATAGAAAGATAACTGAAGTACAAGCATATGAAATTGATATGGCCAATAACTCTGGATTAAGACAGAAGTCCACATTTCAACTTATGAGCACACATGCAGGGCATAGAGCTAATGTAGGATTTACAGAGAAGGATGTAAGAAACTACATCACTGAAAAAAGAAAAAGAAGTATGGCGTATGGTGAGATTGGATGTCTTTCACAATATTTTCAACGGCAATTGTTGGAGAATCCATCCTTCTTTCATGCATATCAGATGGATGCCGAAGAACAAATTACAAATGTGTTTTGGTGTGATGCACGTATGATTTTGGATTACGGGTATTTTGGTGATGTTGTTTCATTAGACACCACATATTGCACCAACCATGCCAATAGACCACTTGCTTTTTTTTTCTGGTTTTAACCATTATAGAGGTTCGATCCTTTTTGGTGCAGCACTAATGTATGATGAGACAATTGAGTCATTTAAATGGTTGTTTGATACATTTTTACAAGCACACAACAACAAAAAACCAAAGACGATCTTCACTGACCAAGATCAATCAATGGCAAGTGCACTTGAAAAAGTGATGCCTGAGACTCACCATGGTTTATGCACATGGCACTTGTTACAAAATGGAGTCAAACATCTTGGGAACTTGATGAAGGGAGGAAGTTTTCTGCTTAGAGATATAAAAAAATGCATGTATGATATTGACAATGCATCAGATTTTGAGAAACTTTGGTTTGATTTGATCAACGAATATAATATTCGTGATAAATCTTGGATCAAGACAACTTATGGGCTTAAAAAAAAATGGGCGGCGTGTTACATGAAGGAAGTGTTAACACTTGGCATGCGAAGTACACAACTTAGTGAAAGTTTGAATGCTCACTTCAAGTCTTGTATGCAACCAAATGTGGATATCCTAGAATTCTTCAATCATTTCGAAAGAGTTGTTGATGAGAAGAGAGCAAAAGAATTGAGTTGTGTGTATGAATCCTCACATAAGCTTGCAAGGTTGAAATATGAAACTTCACCAATACTAACCCAAATGGGAAAAGTATACACACACACTGTCTTTGAATTGTTTCAAGATGAGTTTAAGTCATTATTAGCTCTATCTGTACCAATTAGACATGAAACTGACTCTCTTTGCCAATATGTCATCACTAAGGAAAAACATGAAGGATCTTGGAGAGTGTCATTTAATCGTGTCTCAACTTCCATTGCTTGTAGTTGTAGGAAGTTTGAGACATTTGGCATACTTTGTTCACATGCATTAAAGATCTTTGAATTGAATGATGTTAAGGTAATGCCTGATATGTATATCTTAAGAAGGTGGACAAGGGAAGCCCGTTATGGCATTGTGCAAGATTTTATGGGAAATGAGGTTGAAGGAGATCCTAAGTTGTTAAGAAATCGAATGTACAGACAAGTTGTCTCTAAGTTCATTAGAGCAGCGGCTGAAGCATCAAATGATGAAGAAAGCCTCAAGTTTGTTGATAACAGTGTAGATGACATGCTAAAGAAAATGATGGAATCTCGCGCACAAGCTATGGATAAGAACGGTGAAAACGGTGCTCGTCCGGCAATTATGAGTTCTGATCCTATGCAAGCAAAGGGATTCAAGAATCAACCCGGCTCAAAAAGAACCAAGCGACTTAAAAGTTGCCTTGAAAAGCAGCATAGTCAAGCTACATCTAGCCGCGCTCCACCTAAACAAAGAAGTGCACAGGTATGGCTGTCTAGTAAGGTGTTTATGTTGGCCCAGTTTTGTGTTAATAATATGGCTAAAGAATTAATAAAATTAGCTTATTTTAATTTTACATAATTATTTTAGGTTAAAGGATTAACAGCTCATATGGTCGATGGAATATCTTGTTCTGCGCCTTCAACTTATGTGCCCCCACAAGCACAAGAAAATCAAGTTAACTACACAGCCATGTTAATGGTAATTTCACATCTTTTTCATTATGAAATATCCTTACATGTAAAAGTATCATGATACTAATTATCTCTTTGTTATTAACGTAGGCACCCTTTGACGATCCAAATATTGGAGCATATTCTTACCTTGATTGA

Protein sequence

>MS.gene37953.t1

MASTNVDWKPKVGMGFDNMEEAKQFWLAYGLRVGFGIRVRFTNRKKDGTVSSCRFVCCKEGVKSTGNKNAYEGKYERADIRTNCLARITLSLCRNGKLVIHEFLDEHNHDLQNPETTHMLRSHRKITEVQAYEIDMANNSGLRQKSTFQLMSTHAGHRANVGFTEKDVMPDMYILRRWTREARYGIVQDFMGNEVEGDPKLLRNRMYRQVVSKFIRAAAEASNDEESLKFVDNSVDDMLKKMMESRAQAMDKNGENGARPAIMSSDPMQAKGFKNQPGSKRTKRLKSCLEKQHSQATSSRAPPKQRSAQVKGLTAHMVDGISCSAPSTYVPPQAQENQVNYTAMLMAPFDDPNIGAYSYLD