Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37953.t1 | XP_024629356.1 | 34.7 | 747 | 87 | 4 | 1 | 361 | 1 | 732 | 2.10E-97 | 365.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37953.t1 | Q9SZL8 | 31.2 | 189 | 127 | 2 | 6 | 191 | 69 | 257 | 6.2e-21 | 103.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37953.t1 | A0A396H640 | 86.5 | 185 | 23 | 1 | 1 | 185 | 1 | 183 | 4.9e-88 | 334.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene37953.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37953.t1 | MTR_5g039760 | 69.189 | 185 | 31 | 2 | 1 | 185 | 1 | 159 | 1.15e-85 | 257 |
| MS.gene37953.t1 | MTR_7g074790 | 65.476 | 168 | 39 | 2 | 1 | 168 | 1 | 149 | 1.87e-71 | 223 |
| MS.gene37953.t1 | MTR_7g074790 | 63.158 | 76 | 24 | 3 | 282 | 356 | 155 | 227 | 3.99e-21 | 91.3 |
| MS.gene37953.t1 | MTR_7g061980 | 69.167 | 120 | 36 | 1 | 1 | 120 | 1 | 119 | 2.75e-56 | 180 |
| MS.gene37953.t1 | MTR_0402s0040 | 43.750 | 160 | 86 | 4 | 10 | 167 | 26 | 183 | 1.66e-32 | 127 |
| MS.gene37953.t1 | MTR_3g058090 | 46.721 | 122 | 41 | 2 | 162 | 283 | 9 | 106 | 7.67e-25 | 97.4 |
| MS.gene37953.t1 | MTR_4g102720 | 32.911 | 158 | 71 | 3 | 7 | 164 | 4 | 126 | 5.52e-23 | 96.3 |
| MS.gene37953.t1 | MTR_4g069880 | 63.492 | 63 | 23 | 0 | 1 | 63 | 1 | 63 | 1.85e-22 | 90.1 |
| MS.gene37953.t1 | MTR_4g117620 | 74.000 | 50 | 13 | 0 | 307 | 356 | 27 | 76 | 3.90e-20 | 84.0 |
| MS.gene37953.t1 | MTR_5g015480 | 41.463 | 123 | 69 | 3 | 10 | 130 | 56 | 177 | 2.40e-19 | 87.0 |
| MS.gene37953.t1 | MTR_2g070590 | 41.905 | 105 | 58 | 3 | 10 | 112 | 17 | 120 | 3.86e-18 | 79.7 |
| MS.gene37953.t1 | MTR_2g099430 | 48.315 | 89 | 43 | 3 | 33 | 120 | 26 | 112 | 6.31e-18 | 79.0 |
| MS.gene37953.t1 | MTR_1g019850 | 32.624 | 141 | 87 | 3 | 3 | 142 | 63 | 196 | 2.05e-16 | 78.2 |
| MS.gene37953.t1 | MTR_6g017200 | 44.186 | 86 | 46 | 2 | 10 | 94 | 58 | 142 | 2.22e-15 | 73.2 |
| MS.gene37953.t1 | MTR_6g051425 | 28.736 | 174 | 113 | 4 | 9 | 173 | 13 | 184 | 3.43e-15 | 76.3 |
| MS.gene37953.t1 | MTR_7g113010 | 36.220 | 127 | 66 | 3 | 10 | 135 | 457 | 569 | 1.27e-13 | 72.4 |
| MS.gene37953.t1 | MTR_1g013060 | 29.341 | 167 | 113 | 2 | 7 | 168 | 21 | 187 | 7.03e-13 | 67.8 |
| MS.gene37953.t1 | MTR_5g076070 | 30.380 | 158 | 108 | 2 | 13 | 168 | 56 | 213 | 1.96e-12 | 67.4 |
| MS.gene37953.t1 | MTR_4g067290 | 36.364 | 110 | 66 | 3 | 9 | 117 | 55 | 161 | 3.15e-12 | 66.2 |
| MS.gene37953.t1 | MTR_4g067290 | 36.364 | 110 | 66 | 3 | 9 | 117 | 55 | 161 | 3.74e-12 | 65.9 |
| MS.gene37953.t1 | MTR_2g098880 | 33.929 | 112 | 64 | 3 | 9 | 114 | 60 | 167 | 4.10e-12 | 65.9 |
| MS.gene37953.t1 | MTR_2g098880 | 33.929 | 112 | 64 | 3 | 9 | 114 | 72 | 179 | 4.61e-12 | 65.9 |
| MS.gene37953.t1 | MTR_4g067290 | 36.364 | 110 | 66 | 3 | 9 | 117 | 75 | 181 | 5.30e-12 | 65.9 |
| MS.gene37953.t1 | MTR_4g067290 | 36.364 | 110 | 66 | 3 | 9 | 117 | 75 | 181 | 5.53e-12 | 65.5 |
| MS.gene37953.t1 | MTR_4g067290 | 36.364 | 110 | 66 | 3 | 9 | 117 | 73 | 179 | 5.77e-12 | 65.5 |
| MS.gene37953.t1 | MTR_1g057920 | 39.535 | 86 | 50 | 2 | 10 | 94 | 34 | 118 | 1.13e-11 | 62.0 |
| MS.gene37953.t1 | MTR_4g067290 | 36.364 | 110 | 66 | 3 | 9 | 117 | 115 | 221 | 1.43e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37953.t1 | AT4G38180 | 31.217 | 189 | 127 | 2 | 6 | 191 | 69 | 257 | 7.07e-19 | 88.6 |
| MS.gene37953.t1 | AT5G18960 | 39.423 | 104 | 48 | 2 | 9 | 111 | 42 | 131 | 2.99e-13 | 71.6 |
| MS.gene37953.t1 | AT5G18960 | 39.423 | 104 | 48 | 2 | 9 | 111 | 42 | 131 | 2.99e-13 | 71.6 |
| MS.gene37953.t1 | AT3G06250 | 38.462 | 104 | 49 | 2 | 9 | 111 | 27 | 116 | 1.47e-12 | 69.3 |
| MS.gene37953.t1 | AT3G06250 | 38.462 | 104 | 49 | 2 | 9 | 111 | 27 | 116 | 1.47e-12 | 69.3 |
| MS.gene37953.t1 | AT3G06250 | 38.462 | 104 | 49 | 2 | 9 | 111 | 27 | 116 | 1.47e-12 | 69.3 |
| MS.gene37953.t1 | AT4G15090 | 27.329 | 161 | 114 | 3 | 3 | 162 | 44 | 202 | 6.93e-12 | 67.4 |
| MS.gene37953.t1 | AT4G15090 | 27.329 | 161 | 114 | 3 | 3 | 162 | 44 | 202 | 6.93e-12 | 67.4 |
| MS.gene37953.t1 | AT4G15090 | 27.329 | 161 | 114 | 3 | 3 | 162 | 44 | 202 | 6.93e-12 | 67.4 |
| MS.gene37953.t1 | AT4G15090 | 27.329 | 161 | 114 | 3 | 3 | 162 | 44 | 202 | 6.93e-12 | 67.4 |
| MS.gene37953.t1 | AT4G15090 | 27.329 | 161 | 114 | 3 | 3 | 162 | 44 | 202 | 6.93e-12 | 67.4 |
| MS.gene37953.t1 | AT3G59470 | 35.577 | 104 | 64 | 2 | 9 | 111 | 69 | 170 | 2.41e-11 | 63.9 |
| MS.gene37953.t1 | AT3G59470 | 35.577 | 104 | 64 | 2 | 9 | 111 | 69 | 170 | 2.41e-11 | 63.9 |
| MS.gene37953.t1 | AT3G59470 | 35.577 | 104 | 64 | 2 | 9 | 111 | 81 | 182 | 3.24e-11 | 63.5 |
Find 69 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTCTTAATCCAGAGTTAT+TGG | 0.153704 | 5.1:-76495113 | None:intergenic |
| TGGAAGAGGCTAAACAATTT+TGG | 0.190934 | 5.1:+76494759 | MS.gene37953:CDS |
| TAAGAATATGCTCCAATATT+TGG | 0.196187 | 5.1:-76497104 | None:intergenic |
| CCCTTTGACGATCCAAATAT+TGG | 0.237193 | 5.1:+76497092 | MS.gene37953:CDS |
| GAATTACACTTTCACTTTGT+AGG | 0.262576 | 5.1:+76494963 | MS.gene37953:CDS |
| TGGAATGGGATTTGATAATA+TGG | 0.291396 | 5.1:+76494739 | MS.gene37953:CDS |
| TAACTACACAGCCATGTTAA+TGG | 0.324178 | 5.1:+76496984 | MS.gene37953:CDS |
| ACCTGTGCACTTCTTTGTTT+AGG | 0.326471 | 5.1:-76496769 | None:intergenic |
| TCAAATCCCATTCCAACCTT+TGG | 0.351708 | 5.1:-76494731 | None:intergenic |
| CGGTGAAAACGGTGCTCGTC+CGG | 0.369800 | 5.1:+76496621 | MS.gene37953:CDS |
| CTTCTTAAGATATACATATC+AGG | 0.401674 | 5.1:-76496370 | None:intergenic |
| ACAAGCATATGAAATTGATA+TGG | 0.409436 | 5.1:+76495090 | MS.gene37953:CDS |
| TATGGTTTACGTGTGGGCTT+CGG | 0.418417 | 5.1:+76494788 | MS.gene37953:CDS |
| ATGTAGGTTCGTTTGTTGTA+AGG | 0.422514 | 5.1:+76494859 | MS.gene37953:CDS |
| ATTCGATTTCTTAACAACTT+AGG | 0.424669 | 5.1:-76496457 | None:intergenic |
| AAGGAAGGGGTGAAGAGTAC+AGG | 0.424745 | 5.1:+76494878 | MS.gene37953:CDS |
| ATCTTGCACAATGCCATAAC+GGG | 0.434412 | 5.1:-76496407 | None:intergenic |
| GGATCAGAACTCATAATTGC+CGG | 0.442476 | 5.1:-76496640 | None:intergenic |
| GGAATCTCGCGCACAAGCTA+TGG | 0.451664 | 5.1:+76496591 | MS.gene37953:CDS |
| ATTGATATGGCCAATAACTC+TGG | 0.454000 | 5.1:+76495103 | MS.gene37953:CDS |
| TAAAGGATTAACAGCTCATA+TGG | 0.458478 | 5.1:+76496897 | MS.gene37953:CDS |
| TGGCATCTACAAATGTTGAT+TGG | 0.468983 | 5.1:+76494705 | MS.gene37953:CDS |
| TGTCGATCGCCGGTCAATCA+AGG | 0.471310 | 5.1:-76497127 | None:intergenic |
| TGGACAAGGGAAGCCCGTTA+TGG | 0.472858 | 5.1:+76496394 | MS.gene37953:CDS |
| GGTTCGTTTGTTGTAAGGAA+GGG | 0.477120 | 5.1:+76494864 | MS.gene37953:CDS |
| TCCAATATTTGGATCGTCAA+AGG | 0.483053 | 5.1:-76497093 | None:intergenic |
| TGGAAGCCAAAGGTTGGAAT+GGG | 0.484209 | 5.1:+76494725 | MS.gene37953:CDS |
| CTTGCTTATGGTTTACGTGT+GGG | 0.490896 | 5.1:+76494782 | MS.gene37953:CDS |
| TGTGCACTTCTTTGTTTAGG+TGG | 0.498449 | 5.1:-76496766 | None:intergenic |
| AATCTTGCACAATGCCATAA+CGG | 0.499131 | 5.1:-76496408 | None:intergenic |
| AGGTTCGTTTGTTGTAAGGA+AGG | 0.507670 | 5.1:+76494863 | MS.gene37953:CDS |
| CGAAGCATGTGTGTAGTCTC+TGG | 0.507970 | 5.1:-76495043 | None:intergenic |
| TGACATGCTAAAGAAAATGA+TGG | 0.509229 | 5.1:+76496570 | MS.gene37953:CDS |
| TTGGAAGCCAAAGGTTGGAA+TGG | 0.512541 | 5.1:+76494724 | MS.gene37953:CDS |
| TTGAATCCCTTTGCTTGCAT+AGG | 0.513123 | 5.1:-76496661 | None:intergenic |
| CCAATATTTGGATCGTCAAA+GGG | 0.514929 | 5.1:-76497092 | None:intergenic |
| GTTGATTGGAAGCCAAAGGT+TGG | 0.521153 | 5.1:+76494719 | MS.gene37953:CDS |
| GTTCGTTTGTTGTAAGGAAG+GGG | 0.523718 | 5.1:+76494865 | MS.gene37953:CDS |
| TATGTTCATCTAGAAACTCA+TGG | 0.526110 | 5.1:-76495003 | None:intergenic |
| ATGGATAAGAACGGTGAAAA+CGG | 0.526574 | 5.1:+76496610 | MS.gene37953:CDS |
| ACACTTTCACTTTGTAGGAA+CGG | 0.535912 | 5.1:+76494968 | MS.gene37953:CDS |
| GGGATTTGATAATATGGAAG+AGG | 0.538633 | 5.1:+76494745 | MS.gene37953:CDS |
| CAACTTATGAGCACACATGC+AGG | 0.539062 | 5.1:+76495148 | MS.gene37953:CDS |
| TTTATGGGAAATGAGGTTGA+AGG | 0.539484 | 5.1:+76496430 | MS.gene37953:CDS |
| ACTTTGTAGGAACGGAAAGT+TGG | 0.539900 | 5.1:+76494976 | MS.gene37953:CDS |
| TTCTGATCCTATGCAAGCAA+AGG | 0.549891 | 5.1:+76496654 | MS.gene37953:CDS |
| CTGATATGTATATCTTAAGA+AGG | 0.552468 | 5.1:+76496371 | MS.gene37953:CDS |
| GCTTGCTTATGGTTTACGTG+TGG | 0.553841 | 5.1:+76494781 | MS.gene37953:CDS |
| AAATGTTGATTGGAAGCCAA+AGG | 0.556734 | 5.1:+76494715 | MS.gene37953:CDS |
| CACTGTTATCAACAAACTTG+AGG | 0.562499 | 5.1:-76496543 | None:intergenic |
| TCTGATCCTATGCAAGCAAA+GGG | 0.565167 | 5.1:+76496655 | MS.gene37953:CDS |
| CTCTAAGTTCATTAGAGCAG+CGG | 0.565189 | 5.1:+76496495 | MS.gene37953:CDS |
| ACCTAAACAAAGAAGTGCAC+AGG | 0.577644 | 5.1:+76496768 | MS.gene37953:CDS |
| GTGAAAGTGTAATTCTTGCA+AGG | 0.578211 | 5.1:-76494955 | None:intergenic |
| ATATCTTAAGAAGGTGGACA+AGG | 0.586063 | 5.1:+76496380 | MS.gene37953:CDS |
| AACTTATGAGCACACATGCA+GGG | 0.592671 | 5.1:+76495149 | MS.gene37953:CDS |
| TTAACAGCTCATATGGTCGA+TGG | 0.594285 | 5.1:+76496904 | MS.gene37953:CDS |
| AGGAAGGGGTGAAGAGTACA+GGG | 0.606717 | 5.1:+76494879 | MS.gene37953:CDS |
| ATATGTATATCTTAAGAAGG+TGG | 0.611193 | 5.1:+76496374 | MS.gene37953:CDS |
| GCAGGGCATAGAGCTAATGT+AGG | 0.612172 | 5.1:+76495166 | MS.gene37953:CDS |
| ACGGCACTGTATCATCATGT+AGG | 0.621980 | 5.1:+76494843 | MS.gene37953:CDS |
| ATGTGAAATTACCATTAACA+TGG | 0.624421 | 5.1:-76496995 | None:intergenic |
| TTTACAAACAGGAAGAAAGA+CGG | 0.640619 | 5.1:+76494824 | MS.gene37953:CDS |
| TTCTTTGTTTAGGTGGAGCG+CGG | 0.641114 | 5.1:-76496759 | None:intergenic |
| TAATGTAGGATTTACAGAGA+AGG | 0.645234 | 5.1:+76495180 | MS.gene37953:CDS |
| TGTGCTCATAAGTTGAAATG+TGG | 0.654667 | 5.1:-76495140 | None:intergenic |
| TATCTTAAGAAGGTGGACAA+GGG | 0.672366 | 5.1:+76496381 | MS.gene37953:CDS |
| AAGGGATTCAAGAATCAACC+CGG | 0.675754 | 5.1:+76496673 | MS.gene37953:CDS |
| GCACAAGCTATGGATAAGAA+CGG | 0.681477 | 5.1:+76496601 | MS.gene37953:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACATAATTATTTTAGGTTAA+AGG | + | chr5.1:76496880-76496899 | MS.gene37953:intron | 15.0% |
| !! | ATAATATTCGTGATAAATCT+TGG | + | chr5.1:76495816-76495835 | MS.gene37953:intron | 20.0% |
| !! | CATATTATTAACACAAAACT+GGG | - | chr5.1:76496824-76496843 | None:intergenic | 20.0% |
| !! | TGAAAAAAGAAAAAGAAGTA+TGG | + | chr5.1:76495222-76495241 | MS.gene37953:intron | 20.0% |
| !! | TTATGGGCTTAAAAAAAAAT+GGG | + | chr5.1:76495850-76495869 | MS.gene37953:intron | 20.0% |
| !!! | AACAAATTACAAATGTGTTT+TGG | + | chr5.1:76495338-76495357 | MS.gene37953:intron | 20.0% |
| ! | ACAAGCATATGAAATTGATA+TGG | + | chr5.1:76495090-76495109 | MS.gene37953:CDS | 25.0% |
| ! | AGACAATTGAGTCATTTAAA+TGG | + | chr5.1:76495522-76495541 | MS.gene37953:intron | 25.0% |
| ! | ATATGTATATCTTAAGAAGG+TGG | + | chr5.1:76496374-76496393 | MS.gene37953:CDS | 25.0% |
| ! | ATGTGAAATTACCATTAACA+TGG | - | chr5.1:76496998-76497017 | None:intergenic | 25.0% |
| ! | ATTCGATTTCTTAACAACTT+AGG | - | chr5.1:76496460-76496479 | None:intergenic | 25.0% |
| ! | CCATATTATTAACACAAAAC+TGG | - | chr5.1:76496825-76496844 | None:intergenic | 25.0% |
| ! | CTGATATGTATATCTTAAGA+AGG | + | chr5.1:76496371-76496390 | MS.gene37953:CDS | 25.0% |
| ! | CTTATGGGCTTAAAAAAAAA+TGG | + | chr5.1:76495849-76495868 | MS.gene37953:intron | 25.0% |
| ! | CTTCTTAAGATATACATATC+AGG | - | chr5.1:76496373-76496392 | None:intergenic | 25.0% |
| ! | CTTTGAATTGAATGATGTTA+AGG | + | chr5.1:76496342-76496361 | MS.gene37953:intron | 25.0% |
| ! | TAAGAATATGCTCCAATATT+TGG | - | chr5.1:76497107-76497126 | None:intergenic | 25.0% |
| !! | GTCTTTCACAATATTTTCAA+CGG | + | chr5.1:76495263-76495282 | MS.gene37953:intron | 25.0% |
| !! | TCATGATACTTTTACATGTA+AGG | - | chr5.1:76497040-76497059 | None:intergenic | 25.0% |
| !!! | CACATTTGTAATTTGTTCTT+CGG | - | chr5.1:76495335-76495354 | None:intergenic | 25.0% |
| !!! | CCAGTTTTGTGTTAATAATA+TGG | + | chr5.1:76496822-76496841 | MS.gene37953:intron | 25.0% |
| !!! | TATCTCTTTGTTATTAACGT+AGG | + | chr5.1:76497067-76497086 | MS.gene37953:intron | 25.0% |
| AAAAAAAGCAAGTGGTCTAT+TGG | - | chr5.1:76495443-76495462 | None:intergenic | 30.0% | |
| AAAATGGAGTCAAACATCTT+GGG | + | chr5.1:76495684-76495703 | MS.gene37953:intron | 30.0% | |
| AACCAGAAAAAAAAAGCAAG+TGG | - | chr5.1:76495451-76495470 | None:intergenic | 30.0% | |
| ATCACTAAGGAAAAACATGA+AGG | + | chr5.1:76496220-76496239 | MS.gene37953:intron | 30.0% | |
| CGAAATGATTGAAGAATTCT+AGG | - | chr5.1:76495982-76496001 | None:intergenic | 30.0% | |
| GAATTACACTTTCACTTTGT+AGG | + | chr5.1:76494963-76494982 | MS.gene37953:CDS | 30.0% | |
| TAAAGGATTAACAGCTCATA+TGG | + | chr5.1:76496897-76496916 | MS.gene37953:CDS | 30.0% | |
| TAATGTAGGATTTACAGAGA+AGG | + | chr5.1:76495180-76495199 | MS.gene37953:CDS | 30.0% | |
| TATGTTCATCTAGAAACTCA+TGG | - | chr5.1:76495006-76495025 | None:intergenic | 30.0% | |
| TGACATGCTAAAGAAAATGA+TGG | + | chr5.1:76496570-76496589 | MS.gene37953:CDS | 30.0% | |
| TTTACAAACAGGAAGAAAGA+CGG | + | chr5.1:76494824-76494843 | MS.gene37953:CDS | 30.0% | |
| TTTCCTTAGTGATGACATAT+TGG | - | chr5.1:76496213-76496232 | None:intergenic | 30.0% | |
| ! | ATATTTTCAACGGCAATTGT+TGG | + | chr5.1:76495273-76495292 | MS.gene37953:intron | 30.0% |
| ! | ATTTTGGATTACGGGTATTT+TGG | + | chr5.1:76495376-76495395 | MS.gene37953:intron | 30.0% |
| ! | TGGAATGGGATTTGATAATA+TGG | + | chr5.1:76494739-76494758 | MS.gene37953:CDS | 30.0% |
| ! | TGTGTATACTTTTCCCATTT+GGG | - | chr5.1:76496104-76496123 | None:intergenic | 30.0% |
| ! | TTAGAGTACGTTTTACAAAC+AGG | + | chr5.1:76494813-76494832 | MS.gene37953:CDS | 30.0% |
| !! | AATTCTAGGATATCCACATT+TGG | - | chr5.1:76495968-76495987 | None:intergenic | 30.0% |
| !! | CATCAGATTTTGAGAAACTT+TGG | + | chr5.1:76495774-76495793 | MS.gene37953:intron | 30.0% |
| !!! | AAACAATTTTGGCTTGCTTA+TGG | + | chr5.1:76494770-76494789 | MS.gene37953:CDS | 30.0% |
| !!! | TCTGGTTTTAACCATTATAG+AGG | + | chr5.1:76495464-76495483 | MS.gene37953:intron | 30.0% |
| AAAGGATCGAACCTCTATAA+TGG | - | chr5.1:76495478-76495497 | None:intergenic | 35.0% | |
| AATCTTGCACAATGCCATAA+CGG | - | chr5.1:76496411-76496430 | None:intergenic | 35.0% | |
| ACACTTTCACTTTGTAGGAA+CGG | + | chr5.1:76494968-76494987 | MS.gene37953:CDS | 35.0% | |
| AGGAAAAACATGAAGGATCT+TGG | + | chr5.1:76496227-76496246 | MS.gene37953:intron | 35.0% | |
| ATATCTTAAGAAGGTGGACA+AGG | + | chr5.1:76496380-76496399 | MS.gene37953:CDS | 35.0% | |
| ATGGATAAGAACGGTGAAAA+CGG | + | chr5.1:76496610-76496629 | MS.gene37953:CDS | 35.0% | |
| ATTGATATGGCCAATAACTC+TGG | + | chr5.1:76495103-76495122 | MS.gene37953:CDS | 35.0% | |
| CAAAATGGAGTCAAACATCT+TGG | + | chr5.1:76495683-76495702 | MS.gene37953:intron | 35.0% | |
| CACTGTTATCAACAAACTTG+AGG | - | chr5.1:76496546-76496565 | None:intergenic | 35.0% | |
| CATCTGATATGCATGAAAGA+AGG | - | chr5.1:76495308-76495327 | None:intergenic | 35.0% | |
| CCAATATTTGGATCGTCAAA+GGG | - | chr5.1:76497095-76497114 | None:intergenic | 35.0% | |
| CTGTCTTAATCCAGAGTTAT+TGG | - | chr5.1:76495116-76495135 | None:intergenic | 35.0% | |
| CTTCTTTCATGCATATCAGA+TGG | + | chr5.1:76495306-76495325 | MS.gene37953:intron | 35.0% | |
| CTTGGATCAAGACAACTTAT+GGG | + | chr5.1:76495834-76495853 | MS.gene37953:intron | 35.0% | |
| GAGTCAGTTTCATGTCTAAT+TGG | - | chr5.1:76496184-76496203 | None:intergenic | 35.0% | |
| GGGAACAAAAATGCATATGA+AGG | + | chr5.1:76494899-76494918 | MS.gene37953:CDS | 35.0% | |
| TAACTACACAGCCATGTTAA+TGG | + | chr5.1:76496984-76497003 | MS.gene37953:CDS | 35.0% | |
| TATCTTAAGAAGGTGGACAA+GGG | + | chr5.1:76496381-76496400 | MS.gene37953:CDS | 35.0% | |
| TCACCAATACTAACCCAAAT+GGG | + | chr5.1:76496088-76496107 | MS.gene37953:intron | 35.0% | |
| TCCAATATTTGGATCGTCAA+AGG | - | chr5.1:76497096-76497115 | None:intergenic | 35.0% | |
| TCTTGGATCAAGACAACTTA+TGG | + | chr5.1:76495833-76495852 | MS.gene37953:intron | 35.0% | |
| TGATATGCATGAAAGAAGGA+TGG | - | chr5.1:76495304-76495323 | None:intergenic | 35.0% | |
| TGGCATCTACAAATGTTGAT+TGG | + | chr5.1:76494705-76494724 | MS.gene37953:CDS | 35.0% | |
| TGGGCTTAAAAAAAAATGGG+CGG | + | chr5.1:76495853-76495872 | MS.gene37953:intron | 35.0% | |
| TTCACCAATACTAACCCAAA+TGG | + | chr5.1:76496087-76496106 | MS.gene37953:intron | 35.0% | |
| TTGCCAATATGTCATCACTA+AGG | + | chr5.1:76496207-76496226 | MS.gene37953:intron | 35.0% | |
| TTTATGGGAAATGAGGTTGA+AGG | + | chr5.1:76496430-76496449 | MS.gene37953:CDS | 35.0% | |
| ! | AAATGTTGATTGGAAGCCAA+AGG | + | chr5.1:76494715-76494734 | MS.gene37953:CDS | 35.0% |
| ! | ACATGGCACTTGTTACAAAA+TGG | + | chr5.1:76495668-76495687 | MS.gene37953:intron | 35.0% |
| ! | ACTTGATTTTCTTGTGCTTG+TGG | - | chr5.1:76496964-76496983 | None:intergenic | 35.0% |
| ! | AGAAAAAGAAGTATGGCGTA+TGG | + | chr5.1:76495229-76495248 | MS.gene37953:intron | 35.0% |
| ! | CACGTATGATTTTGGATTAC+GGG | + | chr5.1:76495368-76495387 | MS.gene37953:intron | 35.0% |
| ! | CTTGATTTTCTTGTGCTTGT+GGG | - | chr5.1:76496963-76496982 | None:intergenic | 35.0% |
| ! | GCAAGATTTTATGGGAAATG+AGG | + | chr5.1:76496423-76496442 | MS.gene37953:CDS | 35.0% |
| ! | GCACGTATGATTTTGGATTA+CGG | + | chr5.1:76495367-76495386 | MS.gene37953:intron | 35.0% |
| ! | GGCATTGTGCAAGATTTTAT+GGG | + | chr5.1:76496415-76496434 | MS.gene37953:CDS | 35.0% |
| ! | GGGATTTGATAATATGGAAG+AGG | + | chr5.1:76494745-76494764 | MS.gene37953:CDS | 35.0% |
| ! | GTCTAGTAAGGTGTTTATGT+TGG | + | chr5.1:76496798-76496817 | MS.gene37953:intron | 35.0% |
| ! | GTGAAAGTGTAATTCTTGCA+AGG | - | chr5.1:76494958-76494977 | None:intergenic | 35.0% |
| ! | GTGTGTATACTTTTCCCATT+TGG | - | chr5.1:76496105-76496124 | None:intergenic | 35.0% |
| ! | TATAGAGGTTCGATCCTTTT+TGG | + | chr5.1:76495479-76495498 | MS.gene37953:intron | 35.0% |
| ! | TGGAAGAGGCTAAACAATTT+TGG | + | chr5.1:76494759-76494778 | MS.gene37953:CDS | 35.0% |
| ! | TGGCATTGTGCAAGATTTTA+TGG | + | chr5.1:76496414-76496433 | MS.gene37953:CDS | 35.0% |
| ! | TGTAGGAAGTTTGAGACATT+TGG | + | chr5.1:76496292-76496311 | MS.gene37953:intron | 35.0% |
| ! | TGTGCTCATAAGTTGAAATG+TGG | - | chr5.1:76495143-76495162 | None:intergenic | 35.0% |
| ! | TTGATTTTCTTGTGCTTGTG+GGG | - | chr5.1:76496962-76496981 | None:intergenic | 35.0% |
| !! | ATGAAGGAAGTGTTAACACT+TGG | + | chr5.1:76495884-76495903 | MS.gene37953:intron | 35.0% |
| !! | ATGTAGGTTCGTTTGTTGTA+AGG | + | chr5.1:76494859-76494878 | MS.gene37953:CDS | 35.0% |
| !! | TTTCCCATTTGGGTTAGTAT+TGG | - | chr5.1:76496094-76496113 | None:intergenic | 35.0% |
| !!! | GACCACTTGCTTTTTTTTTC+TGG | + | chr5.1:76495446-76495465 | MS.gene37953:intron | 35.0% |
| AACTTATGAGCACACATGCA+GGG | + | chr5.1:76495149-76495168 | MS.gene37953:CDS | 40.0% | |
| AAGGGATTCAAGAATCAACC+CGG | + | chr5.1:76496673-76496692 | MS.gene37953:CDS | 40.0% | |
| AATCCTCACATAAGCTTGCA+AGG | + | chr5.1:76496050-76496069 | MS.gene37953:intron | 40.0% | |
| ACATCTTGGGAACTTGATGA+AGG | + | chr5.1:76495697-76495716 | MS.gene37953:intron | 40.0% | |
| ACATTAGTGCTGCACCAAAA+AGG | - | chr5.1:76495496-76495515 | None:intergenic | 40.0% | |
| ACTTTGTAGGAACGGAAAGT+TGG | + | chr5.1:76494976-76494995 | MS.gene37953:CDS | 40.0% | |
| ATCTTGCACAATGCCATAAC+GGG | - | chr5.1:76496410-76496429 | None:intergenic | 40.0% | |
| CACTGACCAAGATCAATCAA+TGG | + | chr5.1:76495598-76495617 | MS.gene37953:intron | 40.0% | |
| CATCTTGGGAACTTGATGAA+GGG | + | chr5.1:76495698-76495717 | MS.gene37953:intron | 40.0% | |
| CCCTTTGACGATCCAAATAT+TGG | + | chr5.1:76497092-76497111 | MS.gene37953:CDS | 40.0% | |
| CTCTAAGTTCATTAGAGCAG+CGG | + | chr5.1:76496495-76496514 | MS.gene37953:CDS | 40.0% | |
| CTTCCATTGCTTGTAGTTGT+AGG | + | chr5.1:76496275-76496294 | MS.gene37953:intron | 40.0% | |
| CTTCCTACAACTACAAGCAA+TGG | - | chr5.1:76496281-76496300 | None:intergenic | 40.0% | |
| CTTGCTTATGGTTTACGTGT+GGG | + | chr5.1:76494782-76494801 | MS.gene37953:CDS | 40.0% | |
| GCACAAGCTATGGATAAGAA+CGG | + | chr5.1:76496601-76496620 | MS.gene37953:CDS | 40.0% | |
| GGATCAGAACTCATAATTGC+CGG | - | chr5.1:76496643-76496662 | None:intergenic | 40.0% | |
| GTCTTGTATGCAACCAAATG+TGG | + | chr5.1:76495952-76495971 | MS.gene37953:intron | 40.0% | |
| TCAAATCCCATTCCAACCTT+TGG | - | chr5.1:76494734-76494753 | None:intergenic | 40.0% | |
| TCTGATCCTATGCAAGCAAA+GGG | + | chr5.1:76496655-76496674 | MS.gene37953:CDS | 40.0% | |
| TTAACAGCTCATATGGTCGA+TGG | + | chr5.1:76496904-76496923 | MS.gene37953:CDS | 40.0% | |
| TTCTGATCCTATGCAAGCAA+AGG | + | chr5.1:76496654-76496673 | MS.gene37953:CDS | 40.0% | |
| TTGAATCCCTTTGCTTGCAT+AGG | - | chr5.1:76496664-76496683 | None:intergenic | 40.0% | |
| ! | AACAAAGAAGTGCACAGGTA+TGG | + | chr5.1:76496773-76496792 | MS.gene37953:intron | 40.0% |
| ! | ACCTAAACAAAGAAGTGCAC+AGG | + | chr5.1:76496768-76496787 | MS.gene37953:CDS | 40.0% |
| ! | ACCTGTGCACTTCTTTGTTT+AGG | - | chr5.1:76496772-76496791 | None:intergenic | 40.0% |
| ! | CACTTGCCATTGATTGATCT+TGG | - | chr5.1:76495607-76495626 | None:intergenic | 40.0% |
| ! | GTGTAGTCTCTGGATTTTGT+AGG | - | chr5.1:76495036-76495055 | None:intergenic | 40.0% |
| ! | GTGTGATGCACGTATGATTT+TGG | + | chr5.1:76495360-76495379 | MS.gene37953:intron | 40.0% |
| ! | TCTCTGGATTTTGTAGGTCA+TGG | - | chr5.1:76495030-76495049 | None:intergenic | 40.0% |
| ! | TGATTTTCTTGTGCTTGTGG+GGG | - | chr5.1:76496961-76496980 | None:intergenic | 40.0% |
| ! | TGTGCACTTCTTTGTTTAGG+TGG | - | chr5.1:76496769-76496788 | None:intergenic | 40.0% |
| !! | AAGGCAACTTTTAAGTCGCT+TGG | - | chr5.1:76496710-76496729 | None:intergenic | 40.0% |
| !! | AGGTTCGTTTGTTGTAAGGA+AGG | + | chr5.1:76494863-76494882 | MS.gene37953:CDS | 40.0% |
| !! | GGTTCGTTTGTTGTAAGGAA+GGG | + | chr5.1:76494864-76494883 | MS.gene37953:CDS | 40.0% |
| !! | GTTCGTTTGTTGTAAGGAAG+GGG | + | chr5.1:76494865-76494884 | MS.gene37953:CDS | 40.0% |
| !!! | CTTGACTATGCTGCTTTTCA+AGG | - | chr5.1:76496729-76496748 | None:intergenic | 40.0% |
| AAGCAAGTGGTCTATTGGCA+TGG | - | chr5.1:76495438-76495457 | None:intergenic | 45.0% | |
| AAGTGGTCTATTGGCATGGT+TGG | - | chr5.1:76495434-76495453 | None:intergenic | 45.0% | |
| ACAGGTATGGCTGTCTAGTA+AGG | + | chr5.1:76496786-76496805 | MS.gene37953:intron | 45.0% | |
| ACGGCACTGTATCATCATGT+AGG | + | chr5.1:76494843-76494862 | MS.gene37953:CDS | 45.0% | |
| AGTATGGCGTATGGTGAGAT+TGG | + | chr5.1:76495238-76495257 | MS.gene37953:intron | 45.0% | |
| AGTGCCATGTGCATAAACCA+TGG | - | chr5.1:76495658-76495677 | None:intergenic | 45.0% | |
| CAACCTTGCAAGCTTATGTG+AGG | - | chr5.1:76496056-76496075 | None:intergenic | 45.0% | |
| CAACTTATGAGCACACATGC+AGG | + | chr5.1:76495148-76495167 | MS.gene37953:CDS | 45.0% | |
| CATAAACCATGGTGAGTCTC+AGG | - | chr5.1:76495647-76495666 | None:intergenic | 45.0% | |
| CTCACCATGGTTTATGCACA+TGG | + | chr5.1:76495651-76495670 | MS.gene37953:intron | 45.0% | |
| GCTTGCTTATGGTTTACGTG+TGG | + | chr5.1:76494781-76494800 | MS.gene37953:CDS | 45.0% | |
| GTTGATTGGAAGCCAAAGGT+TGG | + | chr5.1:76494719-76494738 | MS.gene37953:CDS | 45.0% | |
| TATGGTTTACGTGTGGGCTT+CGG | + | chr5.1:76494788-76494807 | MS.gene37953:CDS | 45.0% | |
| TGGAAGCCAAAGGTTGGAAT+GGG | + | chr5.1:76494725-76494744 | MS.gene37953:CDS | 45.0% | |
| TGGTCAGTGAAGATCGTCTT+TGG | - | chr5.1:76495587-76495606 | None:intergenic | 45.0% | |
| TTGGAAGCCAAAGGTTGGAA+TGG | + | chr5.1:76494724-76494743 | MS.gene37953:CDS | 45.0% | |
| ! | TTCTTTGTTTAGGTGGAGCG+CGG | - | chr5.1:76496762-76496781 | None:intergenic | 45.0% |
| !! | TCGCTTGGTTCTTTTTGAGC+CGG | - | chr5.1:76496695-76496714 | None:intergenic | 45.0% |
| !!! | TAATTTTACATAATTATTTT+AGG | + | chr5.1:76496873-76496892 | MS.gene37953:intron | 5.0% |
| CGAAGCATGTGTGTAGTCTC+TGG | - | chr5.1:76495046-76495065 | None:intergenic | 50.0% | |
| CTTGGGAACTTGATGAAGGG+AGG | + | chr5.1:76495701-76495720 | MS.gene37953:intron | 50.0% | |
| GCAGGGCATAGAGCTAATGT+AGG | + | chr5.1:76495166-76495185 | MS.gene37953:CDS | 50.0% | |
| ! | AAGGAAGGGGTGAAGAGTAC+AGG | + | chr5.1:76494878-76494897 | MS.gene37953:CDS | 50.0% |
| ! | AGGAAGGGGTGAAGAGTACA+GGG | + | chr5.1:76494879-76494898 | MS.gene37953:CDS | 50.0% |
| ! | GGCATGGTTGGTGCAATATG+TGG | - | chr5.1:76495422-76495441 | None:intergenic | 50.0% |
| ! | TGTGGGGGCACATAAGTTGA+AGG | - | chr5.1:76496946-76496965 | None:intergenic | 50.0% |
| !! | CGCTTGGTTCTTTTTGAGCC+GGG | - | chr5.1:76496694-76496713 | None:intergenic | 50.0% |
| ATGGGCGGCGTGTTACATGA+AGG | + | chr5.1:76495868-76495887 | MS.gene37953:intron | 55.0% | |
| GGAATCTCGCGCACAAGCTA+TGG | + | chr5.1:76496591-76496610 | MS.gene37953:CDS | 55.0% | |
| GTGATGCCTGAGACTCACCA+TGG | + | chr5.1:76495638-76495657 | MS.gene37953:intron | 55.0% | |
| TGGACAAGGGAAGCCCGTTA+TGG | + | chr5.1:76496394-76496413 | MS.gene37953:CDS | 55.0% | |
| CGGTGAAAACGGTGCTCGTC+CGG | + | chr5.1:76496621-76496640 | MS.gene37953:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 76494704 | 76497136 | 76494704 | ID=MS.gene37953 |
| chr5.1 | mRNA | 76494704 | 76497136 | 76494704 | ID=MS.gene37953.t1;Parent=MS.gene37953 |
| chr5.1 | exon | 76494704 | 76495204 | 76494704 | ID=MS.gene37953.t1.exon1;Parent=MS.gene37953.t1 |
| chr5.1 | CDS | 76494704 | 76495204 | 76494704 | ID=cds.MS.gene37953.t1;Parent=MS.gene37953.t1 |
| chr5.1 | exon | 76496364 | 76496789 | 76496364 | ID=MS.gene37953.t1.exon2;Parent=MS.gene37953.t1 |
| chr5.1 | CDS | 76496364 | 76496789 | 76496364 | ID=cds.MS.gene37953.t1;Parent=MS.gene37953.t1 |
| chr5.1 | exon | 76496895 | 76497005 | 76496895 | ID=MS.gene37953.t1.exon3;Parent=MS.gene37953.t1 |
| chr5.1 | CDS | 76496895 | 76497005 | 76496895 | ID=cds.MS.gene37953.t1;Parent=MS.gene37953.t1 |
| chr5.1 | exon | 76497089 | 76497136 | 76497089 | ID=MS.gene37953.t1.exon4;Parent=MS.gene37953.t1 |
| chr5.1 | CDS | 76497089 | 76497136 | 76497089 | ID=cds.MS.gene37953.t1;Parent=MS.gene37953.t1 |
| Gene Sequence |
| Protein sequence |
