Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37959.t1 | XP_024639803.1 | 86.2 | 123 | 8 | 1 | 3 | 125 | 7 | 120 | 1.20E-48 | 202.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37959.t1 | Q84W66 | 42.5 | 113 | 53 | 2 | 9 | 121 | 46 | 146 | 5.6e-15 | 82.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37959.t1 | I3TAX2 | 86.2 | 123 | 8 | 1 | 3 | 125 | 7 | 120 | 8.5e-49 | 202.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene37959.t1 | TF | NF-YB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37959.t1 | MTR_5g095900 | 86.957 | 115 | 6 | 1 | 11 | 125 | 3 | 108 | 1.28e-68 | 205 |
MS.gene37959.t1 | MTR_5g095860 | 66.957 | 115 | 19 | 2 | 11 | 125 | 3 | 98 | 7.08e-44 | 142 |
MS.gene37959.t1 | MTR_4g133952 | 43.750 | 112 | 54 | 1 | 10 | 121 | 44 | 146 | 3.19e-24 | 93.6 |
MS.gene37959.t1 | MTR_4g119500 | 40.164 | 122 | 61 | 2 | 1 | 122 | 2 | 111 | 5.26e-23 | 87.8 |
MS.gene37959.t1 | MTR_4g133938 | 43.220 | 118 | 53 | 3 | 7 | 122 | 3 | 108 | 6.12e-23 | 87.8 |
MS.gene37959.t1 | MTR_0392s0020 | 39.344 | 122 | 59 | 3 | 1 | 122 | 1 | 107 | 1.19e-22 | 87.0 |
MS.gene37959.t1 | MTR_1g039040 | 43.810 | 105 | 47 | 2 | 17 | 121 | 2 | 94 | 4.41e-22 | 87.0 |
MS.gene37959.t1 | MTR_5g095740 | 42.276 | 123 | 57 | 3 | 1 | 121 | 1 | 111 | 2.63e-21 | 84.7 |
MS.gene37959.t1 | MTR_1g083070 | 42.157 | 102 | 50 | 1 | 21 | 122 | 1 | 93 | 2.74e-21 | 83.2 |
MS.gene37959.t1 | MTR_3g058980 | 40.323 | 124 | 62 | 2 | 1 | 121 | 1 | 115 | 3.23e-21 | 84.7 |
MS.gene37959.t1 | MTR_2g026710 | 40.517 | 116 | 57 | 2 | 7 | 122 | 3 | 106 | 4.52e-21 | 83.6 |
MS.gene37959.t1 | MTR_1g072790 | 39.683 | 126 | 62 | 3 | 1 | 121 | 1 | 117 | 2.32e-20 | 82.0 |
MS.gene37959.t1 | MTR_7g061270 | 37.288 | 118 | 64 | 2 | 5 | 122 | 8 | 115 | 9.34e-20 | 80.5 |
MS.gene37959.t1 | MTR_7g100650 | 37.607 | 117 | 63 | 2 | 5 | 121 | 8 | 114 | 1.21e-19 | 80.1 |
MS.gene37959.t1 | MTR_8g091720 | 39.316 | 117 | 59 | 2 | 6 | 122 | 13 | 117 | 1.66e-19 | 80.5 |
MS.gene37959.t1 | MTR_5g095920 | 94.737 | 38 | 2 | 0 | 88 | 125 | 17 | 54 | 2.01e-19 | 78.6 |
MS.gene37959.t1 | MTR_1g088860 | 38.889 | 108 | 57 | 1 | 15 | 122 | 27 | 125 | 1.75e-18 | 77.8 |
MS.gene37959.t1 | MTR_8g093920 | 38.776 | 98 | 51 | 1 | 24 | 121 | 40 | 128 | 1.05e-16 | 73.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37959.t1 | AT5G47670 | 44.248 | 113 | 51 | 2 | 9 | 121 | 17 | 117 | 4.24e-24 | 92.4 |
MS.gene37959.t1 | AT1G21970 | 42.149 | 121 | 53 | 3 | 6 | 121 | 39 | 147 | 5.88e-24 | 92.8 |
MS.gene37959.t1 | AT5G47670 | 44.248 | 113 | 51 | 2 | 9 | 121 | 46 | 146 | 8.59e-24 | 92.4 |
MS.gene37959.t1 | AT5G47670 | 44.248 | 113 | 51 | 2 | 9 | 121 | 46 | 146 | 8.59e-24 | 92.4 |
MS.gene37959.t1 | AT4G14540 | 41.322 | 121 | 59 | 2 | 1 | 121 | 1 | 109 | 1.53e-22 | 87.4 |
MS.gene37959.t1 | AT2G38880 | 37.398 | 123 | 65 | 2 | 1 | 123 | 1 | 111 | 5.70e-22 | 85.5 |
MS.gene37959.t1 | AT5G47640 | 45.714 | 105 | 45 | 2 | 18 | 122 | 24 | 116 | 1.94e-21 | 85.5 |
MS.gene37959.t1 | AT2G38880 | 36.885 | 122 | 65 | 2 | 1 | 122 | 1 | 110 | 4.04e-21 | 82.4 |
MS.gene37959.t1 | AT2G38880 | 36.885 | 122 | 65 | 2 | 1 | 122 | 1 | 110 | 4.19e-21 | 83.2 |
MS.gene37959.t1 | AT2G38880 | 36.885 | 122 | 65 | 2 | 1 | 122 | 1 | 110 | 4.19e-21 | 83.2 |
MS.gene37959.t1 | AT2G38880 | 36.885 | 122 | 65 | 2 | 1 | 122 | 1 | 110 | 4.19e-21 | 83.2 |
MS.gene37959.t1 | AT2G38880 | 36.885 | 122 | 65 | 2 | 1 | 122 | 1 | 110 | 5.13e-21 | 82.8 |
MS.gene37959.t1 | AT2G38880 | 37.903 | 124 | 61 | 3 | 1 | 120 | 1 | 112 | 5.98e-21 | 83.6 |
MS.gene37959.t1 | AT2G38880 | 37.903 | 124 | 61 | 3 | 1 | 120 | 1 | 112 | 5.98e-21 | 83.6 |
MS.gene37959.t1 | AT2G38880 | 36.885 | 122 | 65 | 2 | 1 | 122 | 1 | 110 | 2.57e-20 | 81.6 |
MS.gene37959.t1 | AT2G38880 | 36.885 | 122 | 65 | 2 | 1 | 122 | 1 | 110 | 2.57e-20 | 81.6 |
MS.gene37959.t1 | AT2G38880 | 36.885 | 122 | 65 | 2 | 1 | 122 | 1 | 110 | 2.57e-20 | 81.6 |
MS.gene37959.t1 | AT2G47810 | 39.252 | 107 | 56 | 1 | 15 | 121 | 42 | 139 | 6.20e-19 | 78.2 |
MS.gene37959.t1 | AT1G09030 | 39.394 | 99 | 51 | 1 | 27 | 125 | 6 | 95 | 1.18e-18 | 76.6 |
MS.gene37959.t1 | AT3G53340 | 39.252 | 107 | 55 | 2 | 16 | 122 | 22 | 118 | 1.22e-18 | 76.3 |
MS.gene37959.t1 | AT3G53340 | 38.938 | 113 | 55 | 3 | 16 | 124 | 22 | 124 | 1.55e-18 | 77.0 |
MS.gene37959.t1 | AT3G53340 | 38.938 | 113 | 55 | 3 | 16 | 124 | 22 | 124 | 1.55e-18 | 77.0 |
MS.gene37959.t1 | AT2G37060 | 37.931 | 116 | 62 | 2 | 6 | 121 | 13 | 118 | 1.90e-18 | 77.0 |
MS.gene37959.t1 | AT2G37060 | 37.931 | 116 | 62 | 2 | 6 | 121 | 13 | 118 | 1.90e-18 | 77.0 |
MS.gene37959.t1 | AT2G37060 | 37.931 | 116 | 62 | 2 | 6 | 121 | 13 | 118 | 1.90e-18 | 77.0 |
MS.gene37959.t1 | AT3G53340 | 39.252 | 107 | 55 | 2 | 16 | 122 | 22 | 118 | 2.14e-18 | 77.0 |
MS.gene37959.t1 | AT3G53340 | 39.252 | 107 | 55 | 2 | 16 | 122 | 22 | 118 | 2.14e-18 | 77.0 |
MS.gene37959.t1 | AT2G13570 | 37.383 | 107 | 55 | 2 | 4 | 110 | 19 | 113 | 1.53e-16 | 73.2 |
Find 17 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACAATCTAACTTGCAATAA+TGG | 0.273922 | 5.1:-76570270 | None:intergenic |
CCTGATCTAACTTGCAATAA+TGG | 0.274206 | 5.1:-76570243 | None:intergenic |
CATCATTTCCTTGCTTTCAT+CGG | 0.454642 | 5.1:-76570173 | None:intergenic |
AATATCATGGCTGATCATCC+TGG | 0.475004 | 5.1:+76568614 | None:intergenic |
CAATCTATGCACATTGGCAA+TGG | 0.483306 | 5.1:-76570116 | None:intergenic |
CCATTATTGCAAGTTAGATC+AGG | 0.486813 | 5.1:+76570243 | MS.gene37959:CDS |
TCTTGCACCCTCGAACTAGC+TGG | 0.492382 | 5.1:-76570073 | None:intergenic |
CGATGAAAGCAAGGAAATGA+TGG | 0.499610 | 5.1:+76570174 | MS.gene37959:CDS |
ATCTAACTTGCAATAATGGT+TGG | 0.501533 | 5.1:-76570266 | None:intergenic |
AATCTATGCACATTGGCAAT+GGG | 0.506843 | 5.1:-76570115 | None:intergenic |
ATCTAACTTGCAATAATGGT+TGG | 0.512109 | 5.1:-76570239 | None:intergenic |
TTACTTGAACTTGACTCTCC+AGG | 0.547483 | 5.1:-76568632 | None:intergenic |
GAGTGCAACCAGCTAGTTCG+AGG | 0.550758 | 5.1:+76570065 | MS.gene37959:CDS |
CATTAGCTTTGTTACTGCTG+AGG | 0.551315 | 5.1:+76570216 | MS.gene37959:CDS |
TTTCATCAATCTATGCACAT+TGG | 0.552004 | 5.1:-76570122 | None:intergenic |
ATGCACATTGGCAATGGGAA+AGG | 0.554205 | 5.1:-76570110 | None:intergenic |
AGTGCAACCAGCTAGTTCGA+GGG | 0.693334 | 5.1:+76570066 | MS.gene37959:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGAAAAAAAACAGTTAAAA+AGG | - | chr5.1:76569444-76569463 | None:intergenic | 15.0% |
!! | TAAAAAGATAGTATAATTTC+CGG | - | chr5.1:76569405-76569424 | None:intergenic | 15.0% |
!! | TTAAAATGTATATATATGCA+TGG | - | chr5.1:76569819-76569838 | None:intergenic | 15.0% |
!!! | GTTTTACAAATTTAAATCTT+TGG | - | chr5.1:76568669-76568688 | None:intergenic | 15.0% |
!! | AAAAAGATAGTATAATTTCC+GGG | - | chr5.1:76569404-76569423 | None:intergenic | 20.0% |
!! | ACAAACAATTAAAGTTAGTT+TGG | + | chr5.1:76569954-76569973 | MS.gene37959:intron | 20.0% |
!! | ATAAAAAAGTTAAATTCACC+CGG | + | chr5.1:76569383-76569402 | MS.gene37959:intron | 20.0% |
!! | GATTATATTGATACTTGTAA+TGG | + | chr5.1:76568817-76568836 | MS.gene37959:intron | 20.0% |
!! | GATTTACTTTGTGATTATTA+AGG | - | chr5.1:76568980-76568999 | None:intergenic | 20.0% |
!! | TATAATGGTTTACATTAGAA+AGG | - | chr5.1:76569544-76569563 | None:intergenic | 20.0% |
!! | TATATGTAAATGTTAGAGAA+TGG | + | chr5.1:76570043-76570062 | MS.gene37959:intron | 20.0% |
!!! | ATTTTTTTCATGCCATAATT+GGG | + | chr5.1:76569657-76569676 | MS.gene37959:intron | 20.0% |
!!! | TATTTTTTTCATGCCATAAT+TGG | + | chr5.1:76569656-76569675 | MS.gene37959:intron | 20.0% |
! | AACACATCTATAAGGTATAA+TGG | - | chr5.1:76569559-76569578 | None:intergenic | 25.0% |
! | AGATCCATATATACATATGT+AGG | - | chr5.1:76569097-76569116 | None:intergenic | 25.0% |
! | AGGATATAAAAGTCAATTGT+GGG | + | chr5.1:76569005-76569024 | MS.gene37959:intron | 25.0% |
! | ATCAATACATACACACATAA+TGG | - | chr5.1:76568800-76568819 | None:intergenic | 25.0% |
! | ATCCATATATACATATGTAG+GGG | - | chr5.1:76569095-76569114 | None:intergenic | 25.0% |
! | GATCCATATATACATATGTA+GGG | - | chr5.1:76569096-76569115 | None:intergenic | 25.0% |
! | TCAATACATACACACATAAT+GGG | - | chr5.1:76568799-76568818 | None:intergenic | 25.0% |
! | TTAGCTACTATGCAAAAATT+GGG | + | chr5.1:76570319-76570338 | MS.gene37959:CDS | 25.0% |
!! | ATACTATCTTTTTACCAAGA+TGG | + | chr5.1:76569411-76569430 | MS.gene37959:intron | 25.0% |
!! | TACAATCTAACTTGCAATAA+TGG | - | chr5.1:76570273-76570292 | None:intergenic | 25.0% |
AAAAATAACCGATGAAAGCA+AGG | + | chr5.1:76570165-76570184 | MS.gene37959:CDS | 30.0% | |
AAATTTCAAGATTCTCTCTC+CGG | - | chr5.1:76569220-76569239 | None:intergenic | 30.0% | |
AATACATACACACATAATGG+GGG | - | chr5.1:76568797-76568816 | None:intergenic | 30.0% | |
ATCACAAAGTAAATCTAGTC+AGG | + | chr5.1:76568985-76569004 | MS.gene37959:intron | 30.0% | |
ATCCCCTACATATGTATATA+TGG | + | chr5.1:76569090-76569109 | MS.gene37959:intron | 30.0% | |
ATTATTAAGGACATTTGAGG+AGG | - | chr5.1:76568967-76568986 | None:intergenic | 30.0% | |
CAATACATACACACATAATG+GGG | - | chr5.1:76568798-76568817 | None:intergenic | 30.0% | |
CAGGATATAAAAGTCAATTG+TGG | + | chr5.1:76569004-76569023 | MS.gene37959:intron | 30.0% | |
GTGATTATTAAGGACATTTG+AGG | - | chr5.1:76568970-76568989 | None:intergenic | 30.0% | |
GTTAGCTACTATGCAAAAAT+TGG | + | chr5.1:76570318-76570337 | MS.gene37959:CDS | 30.0% | |
GTTGTAAATGATAAAGATCG+TGG | + | chr5.1:76569156-76569175 | MS.gene37959:intron | 30.0% | |
TTATTAAGGACATTTGAGGA+GGG | - | chr5.1:76568966-76568985 | None:intergenic | 30.0% | |
TTTCATCAATCTATGCACAT+TGG | - | chr5.1:76570125-76570144 | None:intergenic | 30.0% | |
! | AAAAAGGTACAATTCCATCT+TGG | - | chr5.1:76569428-76569447 | None:intergenic | 30.0% |
! | ATCTAACTTGCAATAATGGT+TGG | - | chr5.1:76570242-76570261 | None:intergenic | 30.0% |
! | TCAAGCTCATGATTTTTCAT+TGG | + | chr5.1:76570465-76570484 | MS.gene37959:intron | 30.0% |
!!! | AGTTTTAGACTTTGCATAGT+TGG | + | chr5.1:76569776-76569795 | MS.gene37959:intron | 30.0% |
AAAAATGACCTCGCATACAT+TGG | - | chr5.1:76569719-76569738 | None:intergenic | 35.0% | |
AAAATGACCTCGCATACATT+GGG | - | chr5.1:76569718-76569737 | None:intergenic | 35.0% | |
AAAATTGCACCCATTTCTGT+TGG | - | chr5.1:76570514-76570533 | None:intergenic | 35.0% | |
AAATGATAAAGATCGTGGAG+AGG | + | chr5.1:76569161-76569180 | MS.gene37959:intron | 35.0% | |
AAATTGCACCCATTTCTGTT+GGG | - | chr5.1:76570513-76570532 | None:intergenic | 35.0% | |
AATCTATGCACATTGGCAAT+GGG | - | chr5.1:76570118-76570137 | None:intergenic | 35.0% | |
ACGTACAACAATCCCAATTA+TGG | - | chr5.1:76569672-76569691 | None:intergenic | 35.0% | |
ATTTCCTTAAGTGATGTGCA+TGG | + | chr5.1:76570650-76570669 | MS.gene37959:intron | 35.0% | |
CATCATTTCCTTGCTTTCAT+CGG | - | chr5.1:76570176-76570195 | None:intergenic | 35.0% | |
CATTGAAATTGAGTCGTGAT+CGG | - | chr5.1:76569585-76569604 | None:intergenic | 35.0% | |
CCATTATTGCAAGTTAGATC+AGG | + | chr5.1:76570243-76570262 | MS.gene37959:CDS | 35.0% | |
TATTAAGGACATTTGAGGAG+GGG | - | chr5.1:76568965-76568984 | None:intergenic | 35.0% | |
TTGGGAAAAGAAAATGTGCA+TGG | - | chr5.1:76569700-76569719 | None:intergenic | 35.0% | |
! | ACAGAAATGGGTGCAATTTT+AGG | + | chr5.1:76570514-76570533 | MS.gene37959:intron | 35.0% |
! | CCTGATCTAACTTGCAATAA+TGG | - | chr5.1:76570246-76570265 | None:intergenic | 35.0% |
! | GATCTTTTGCTTCATGAAAG+AGG | + | chr5.1:76569112-76569131 | MS.gene37959:intron | 35.0% |
! | GATGATGATGATAGAGAACT+TGG | + | chr5.1:76570547-76570566 | MS.gene37959:intron | 35.0% |
!!! | TACATCCAACTTTTTCGTCA+TGG | + | chr5.1:76570373-76570392 | MS.gene37959:CDS | 35.0% |
!!! | TCGGTTATTTTTGCATGTTG+AGG | - | chr5.1:76570157-76570176 | None:intergenic | 35.0% |
ATCGGTGCAACACATCTATA+AGG | - | chr5.1:76569567-76569586 | None:intergenic | 40.0% | |
CAATCTATGCACATTGGCAA+TGG | - | chr5.1:76570119-76570138 | None:intergenic | 40.0% | |
CGATGAAAGCAAGGAAATGA+TGG | + | chr5.1:76570174-76570193 | MS.gene37959:CDS | 40.0% | |
GACGAAAAAGTTGGATGTAG+CGG | - | chr5.1:76570372-76570391 | None:intergenic | 40.0% | |
GATGATGATAGAGAACTTGG+TGG | + | chr5.1:76570550-76570569 | MS.gene37959:intron | 40.0% | |
TTACTTGAACTTGACTCTCC+AGG | - | chr5.1:76568635-76568654 | None:intergenic | 40.0% | |
TTTGCCAACCCAACAGAAAT+GGG | + | chr5.1:76570502-76570521 | MS.gene37959:intron | 40.0% | |
! | AAAAAGTTGGATGTAGCGGA+AGG | - | chr5.1:76570368-76570387 | None:intergenic | 40.0% |
! | CGCTCTTTGTTTGTTTGTCT+CGG | + | chr5.1:76569272-76569291 | MS.gene37959:intron | 40.0% |
! | TTCTTTTCCCAATGTATGCG+AGG | + | chr5.1:76569708-76569727 | MS.gene37959:intron | 40.0% |
! | TTGTGGACAAAAAGAGCATG+AGG | - | chr5.1:76569745-76569764 | None:intergenic | 40.0% |
!! | CATTAGCTTTGTTACTGCTG+AGG | + | chr5.1:76570216-76570235 | MS.gene37959:CDS | 40.0% |
AAAACTCACACACCAGCTTG+TGG | - | chr5.1:76569762-76569781 | None:intergenic | 45.0% | |
ACTGCCATGCACATCACTTA+AGG | - | chr5.1:76570657-76570676 | None:intergenic | 45.0% | |
AGGCAGATCGAGACAAAGTA+AGG | + | chr5.1:76569181-76569200 | MS.gene37959:intron | 45.0% | |
AGTGATGTGCATGGCAGTAT+TGG | + | chr5.1:76570659-76570678 | MS.gene37959:intron | 45.0% | |
ATGCACATTGGCAATGGGAA+AGG | - | chr5.1:76570113-76570132 | None:intergenic | 45.0% | |
GAGCACCATGACGAAAAAGT+TGG | - | chr5.1:76570381-76570400 | None:intergenic | 45.0% | |
GTTTGCCAACCCAACAGAAA+TGG | + | chr5.1:76570501-76570520 | MS.gene37959:intron | 45.0% | |
TCATGAGCTTGAAAAGCCTG+TGG | - | chr5.1:76570457-76570476 | None:intergenic | 45.0% | |
! | ACATACACACATAATGGGGG+TGG | - | chr5.1:76568794-76568813 | None:intergenic | 45.0% |
! | GATGATAGAGAACTTGGTGG+TGG | + | chr5.1:76570553-76570572 | MS.gene37959:intron | 45.0% |
! | GGGTTGGCAAACACAAAGTT+TGG | - | chr5.1:76570493-76570512 | None:intergenic | 45.0% |
! | TGCTCTTTTTGTCCACAAGC+TGG | + | chr5.1:76569747-76569766 | MS.gene37959:intron | 45.0% |
AAGGACATTTGAGGAGGGGA+AGG | - | chr5.1:76568961-76568980 | None:intergenic | 50.0% | |
AGGACATTTGAGGAGGGGAA+GGG | - | chr5.1:76568960-76568979 | None:intergenic | 50.0% | |
AGTGCAACCAGCTAGTTCGA+GGG | + | chr5.1:76570066-76570085 | MS.gene37959:CDS | 50.0% | |
GTAAGGACCGCATCGAAATC+CGG | + | chr5.1:76569198-76569217 | MS.gene37959:intron | 50.0% | |
TCTCTCTCCGGATTTCGATG+CGG | - | chr5.1:76569208-76569227 | None:intergenic | 50.0% | |
TGAGCTTGAAAAGCCTGTGG+TGG | - | chr5.1:76570454-76570473 | None:intergenic | 50.0% | |
TGCACCCATTTCTGTTGGGT+TGG | - | chr5.1:76570509-76570528 | None:intergenic | 50.0% | |
! | GGTGATGGCAACTCAAGTGA+TGG | + | chr5.1:76570583-76570602 | MS.gene37959:intron | 50.0% |
! | TGAAAAGCCTGTGGTGGTGA+TGG | - | chr5.1:76570448-76570467 | None:intergenic | 50.0% |
!! | GATAGAGAACTTGGTGGTGG+TGG | + | chr5.1:76570556-76570575 | MS.gene37959:intron | 50.0% |
!! | GGGGAAGGGTGTTAACAGAA+CGG | - | chr5.1:76568946-76568965 | None:intergenic | 50.0% |
GAGTGCAACCAGCTAGTTCG+AGG | + | chr5.1:76570065-76570084 | MS.gene37959:CDS | 55.0% | |
TCTTGCACCCTCGAACTAGC+TGG | - | chr5.1:76570076-76570095 | None:intergenic | 55.0% | |
TTTCGTCATGGTGCTCGCGT+AGG | + | chr5.1:76570385-76570404 | MS.gene37959:intron | 55.0% | |
!! | AAAGCCTGTGGTGGTGATGG+TGG | - | chr5.1:76570445-76570464 | None:intergenic | 55.0% |
!! | AGAGAACTTGGTGGTGGTGG+TGG | + | chr5.1:76570559-76570578 | MS.gene37959:intron | 55.0% |
TCCACCACCATCACCACCAC+AGG | + | chr5.1:76570438-76570457 | MS.gene37959:intron | 60.0% | |
!! | GAACTTGGTGGTGGTGGTGG+TGG | + | chr5.1:76570562-76570581 | MS.gene37959:intron | 60.0% |
!! | TGTGGTGGTGATGGTGGTGG+AGG | - | chr5.1:76570439-76570458 | None:intergenic | 60.0% |
GTGGAGGTGGAGGTGGAGGT+GGG | - | chr5.1:76570423-76570442 | None:intergenic | 65.0% | |
TGGAGGTGGAGGTGGAGGTG+GGG | - | chr5.1:76570422-76570441 | None:intergenic | 65.0% | |
!! | GATGGTGGTGGAGGTGGAGG+TGG | - | chr5.1:76570430-76570449 | None:intergenic | 65.0% |
!! | GCCTGTGGTGGTGATGGTGG+TGG | - | chr5.1:76570442-76570461 | None:intergenic | 65.0% |
!! | GGTGATGGTGGTGGAGGTGG+AGG | - | chr5.1:76570433-76570452 | None:intergenic | 65.0% |
!! | GGTGGTGATGGTGGTGGAGG+TGG | - | chr5.1:76570436-76570455 | None:intergenic | 65.0% |
!! | GGTGGTGGTGGTGGTGGTGA+TGG | + | chr5.1:76570568-76570587 | MS.gene37959:intron | 65.0% |
GGAGGTGGAGGTGGAGGTGG+GGG | - | chr5.1:76570421-76570440 | None:intergenic | 70.0% | |
GGTGGAGGTGGAGGTGGAGG+TGG | - | chr5.1:76570424-76570443 | None:intergenic | 70.0% | |
!! | GGTGGTGGAGGTGGAGGTGG+AGG | - | chr5.1:76570427-76570446 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 76568620 | 76570714 | 76568620 | ID=MS.gene37959 |
chr5.1 | mRNA | 76568620 | 76570714 | 76568620 | ID=MS.gene37959.t1;Parent=MS.gene37959 |
chr5.1 | exon | 76568620 | 76568650 | 76568620 | ID=MS.gene37959.t1.exon1;Parent=MS.gene37959.t1 |
chr5.1 | CDS | 76568620 | 76568650 | 76568620 | ID=cds.MS.gene37959.t1;Parent=MS.gene37959.t1 |
chr5.1 | exon | 76570059 | 76570402 | 76570059 | ID=MS.gene37959.t1.exon2;Parent=MS.gene37959.t1 |
chr5.1 | CDS | 76570059 | 76570402 | 76570059 | ID=cds.MS.gene37959.t1;Parent=MS.gene37959.t1 |
chr5.1 | exon | 76570676 | 76570714 | 76570676 | ID=MS.gene37959.t1.exon3;Parent=MS.gene37959.t1 |
chr5.1 | CDS | 76570676 | 76570714 | 76570676 | ID=cds.MS.gene37959.t1;Parent=MS.gene37959.t1 |
Gene Sequence |
Protein sequence |