Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38034.t1 | XP_024639383.1 | 60 | 190 | 28 | 2 | 112 | 300 | 1 | 143 | 4.80E-55 | 224.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38034.t1 | F4JL28 | 43.9 | 196 | 100 | 5 | 103 | 298 | 10 | 195 | 6.9e-42 | 172.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38034.t1 | A0A396I035 | 60.0 | 190 | 28 | 2 | 112 | 300 | 1 | 143 | 3.5e-55 | 224.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene38034.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38034.t1 | MTR_5g097190 | 59.358 | 187 | 28 | 2 | 112 | 297 | 1 | 140 | 1.95e-69 | 220 |
| MS.gene38034.t1 | MTR_2g078310 | 44.898 | 196 | 98 | 5 | 103 | 298 | 2 | 187 | 1.91e-49 | 164 |
| MS.gene38034.t1 | MTR_3g117270 | 42.938 | 177 | 92 | 4 | 124 | 300 | 25 | 192 | 6.26e-44 | 149 |
| MS.gene38034.t1 | MTR_3g117270 | 42.938 | 177 | 92 | 4 | 124 | 300 | 25 | 192 | 7.66e-44 | 149 |
| MS.gene38034.t1 | MTR_3g117270 | 42.667 | 150 | 77 | 4 | 124 | 273 | 25 | 165 | 2.18e-32 | 118 |
| MS.gene38034.t1 | MTR_3g117280 | 38.286 | 175 | 93 | 6 | 127 | 300 | 10 | 170 | 4.35e-32 | 118 |
| MS.gene38034.t1 | MTR_3g117270 | 42.759 | 145 | 75 | 3 | 124 | 268 | 25 | 161 | 2.00e-31 | 115 |
| MS.gene38034.t1 | MTR_2g090365 | 32.895 | 228 | 129 | 9 | 77 | 298 | 239 | 448 | 1.09e-23 | 100 |
| MS.gene38034.t1 | MTR_5g095400 | 51.695 | 118 | 27 | 5 | 2 | 108 | 102 | 200 | 3.61e-18 | 85.1 |
| MS.gene38034.t1 | MTR_5g095370 | 54.455 | 101 | 30 | 3 | 2 | 94 | 115 | 207 | 1.21e-16 | 77.8 |
| MS.gene38034.t1 | MTR_5g095430 | 47.899 | 119 | 32 | 5 | 2 | 109 | 93 | 192 | 1.67e-15 | 77.0 |
| MS.gene38034.t1 | MTR_5g094950 | 59.016 | 61 | 22 | 1 | 4 | 61 | 240 | 300 | 7.57e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38034.t1 | AT4G22140 | 44.271 | 192 | 97 | 5 | 107 | 298 | 14 | 195 | 2.78e-52 | 171 |
| MS.gene38034.t1 | AT4G22140 | 45.213 | 188 | 93 | 5 | 111 | 298 | 18 | 195 | 5.27e-52 | 171 |
| MS.gene38034.t1 | AT4G22140 | 45.213 | 188 | 93 | 5 | 111 | 298 | 18 | 195 | 5.27e-52 | 171 |
| MS.gene38034.t1 | AT4G39100 | 38.830 | 188 | 106 | 4 | 111 | 298 | 10 | 188 | 1.06e-37 | 134 |
| MS.gene38034.t1 | AT4G39100 | 38.037 | 163 | 92 | 4 | 111 | 273 | 10 | 163 | 2.81e-29 | 110 |
| MS.gene38034.t1 | AT4G04260 | 37.714 | 175 | 94 | 6 | 126 | 298 | 8 | 169 | 2.92e-28 | 108 |
| MS.gene38034.t1 | AT4G04260 | 36.686 | 169 | 92 | 6 | 132 | 298 | 1 | 156 | 9.30e-26 | 101 |
| MS.gene38034.t1 | AT4G04260 | 41.667 | 120 | 65 | 3 | 122 | 241 | 22 | 136 | 1.93e-21 | 88.6 |
Find 63 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACTTCCTCATAATGATTT+TGG | 0.150660 | 5.1:-77481915 | None:intergenic |
| CTTACCAATGAAATCCTTAT+TGG | 0.178930 | 5.1:-77481852 | None:intergenic |
| TGAGAAAGGTGAAGGGAAAA+TGG | 0.276513 | 5.1:+77480872 | MS.gene38034:CDS |
| TTACCAATGAAATCCTTATT+GGG | 0.288571 | 5.1:-77481851 | None:intergenic |
| AAGTGATACAATGGTGAATT+TGG | 0.296448 | 5.1:+77481796 | MS.gene38034:CDS |
| ATCTGTCTGTGTGGCAGAAT+TGG | 0.322240 | 5.1:-77482050 | None:intergenic |
| TGTCAGGATCATATTTATAT+CGG | 0.322892 | 5.1:-77482009 | None:intergenic |
| GTTTGTGAAGAAAATCATTC+CGG | 0.362416 | 5.1:+77481763 | MS.gene38034:CDS |
| CGAAACCGCATTCCCCAATA+AGG | 0.363476 | 5.1:+77481838 | MS.gene38034:CDS |
| GTATCACTTCTGCATGTTCC+CGG | 0.367443 | 5.1:-77481782 | None:intergenic |
| TTTACTTTCAGTTGGGGATA+AGG | 0.368044 | 5.1:+77481697 | MS.gene38034:intron |
| TAGAATCAGATTTGGTGCTT+TGG | 0.379662 | 5.1:+77480924 | MS.gene38034:CDS |
| GGGTCCCGGGAGATCATAAA+AGG | 0.380784 | 5.1:+77481603 | MS.gene38034:CDS |
| TTCCCCAATAAGGATTTCAT+TGG | 0.412854 | 5.1:+77481848 | MS.gene38034:CDS |
| TCTTGAGAATGTTGGTCCTC+TGG | 0.418950 | 5.1:+77481976 | MS.gene38034:CDS |
| GCTGAGCTTAGAATCAGATT+TGG | 0.423087 | 5.1:+77480916 | MS.gene38034:CDS |
| CATTGAATCATAAAGAGATC+CGG | 0.446125 | 5.1:-77482192 | None:intergenic |
| CAAATGAACCACCCAACAAA+AGG | 0.461572 | 5.1:+77481091 | MS.gene38034:CDS |
| TCTGTCTGTGTGGCAGAATT+GGG | 0.467573 | 5.1:-77482049 | None:intergenic |
| TTCTTCACAAACCCCACATA+CGG | 0.468286 | 5.1:-77481752 | None:intergenic |
| GGTGGTTCATTTGTCTGCAA+AGG | 0.475330 | 5.1:-77481081 | None:intergenic |
| GAGAAAGGTGAAGGGAAAAT+GGG | 0.475879 | 5.1:+77480873 | MS.gene38034:CDS |
| ATGAGCTCTTATGTCATTGA+AGG | 0.478398 | 5.1:+77481582 | MS.gene38034:CDS |
| CTACAATCAGTGCAAAGAAA+AGG | 0.480807 | 5.1:-77482407 | None:intergenic |
| TTTGTGAAGAAAATCATTCC+GGG | 0.487459 | 5.1:+77481764 | MS.gene38034:CDS |
| CTTTCTGATCTTGAGAATGT+TGG | 0.488103 | 5.1:+77481968 | MS.gene38034:CDS |
| TTAGCTGACAGAGACATGAT+TGG | 0.490113 | 5.1:+77480802 | None:intergenic |
| CAATAAGGATTTCATTGGTA+AGG | 0.490339 | 5.1:+77481853 | MS.gene38034:CDS |
| CTTATGTCATTGAAGGGTCC+CGG | 0.491152 | 5.1:+77481589 | MS.gene38034:CDS |
| AAAGGTGCATCATCATCATC+AGG | 0.499288 | 5.1:+77481126 | MS.gene38034:CDS |
| ATAAATATGATCCTGACAAA+GGG | 0.501141 | 5.1:+77482014 | MS.gene38034:CDS |
| TCTTCACAAACCCCACATAC+GGG | 0.501969 | 5.1:-77481751 | None:intergenic |
| GCAAAGATAGTCCCTTTGTC+AGG | 0.504512 | 5.1:-77482025 | None:intergenic |
| ATGTCAGTTGCCTCGTAACC+CGG | 0.518126 | 5.1:+77482173 | MS.gene38034:CDS |
| CTCTTTATGATTCAATGTGA+AGG | 0.534716 | 5.1:+77482198 | MS.gene38034:CDS |
| TTGGGGATAAGGTTCTCCTC+AGG | 0.542548 | 5.1:+77481708 | MS.gene38034:CDS |
| AGTTGGAGAAATCAGTGAAG+AGG | 0.544810 | 5.1:+77480983 | MS.gene38034:CDS |
| CCTCAGGCCTTCTAAACGTA+AGG | 0.554213 | 5.1:+77481724 | MS.gene38034:CDS |
| AAAAGGAGCAAGAATGCTAA+AGG | 0.563448 | 5.1:+77481108 | MS.gene38034:CDS |
| AAAGTGCCAAAATCATTATG+AGG | 0.564737 | 5.1:+77481909 | MS.gene38034:CDS |
| TATAAATATGATCCTGACAA+AGG | 0.565003 | 5.1:+77482013 | MS.gene38034:CDS |
| ATTGAATCATAAAGAGATCC+GGG | 0.568614 | 5.1:-77482191 | None:intergenic |
| TTATGTCATTGAAGGGTCCC+GGG | 0.569140 | 5.1:+77481590 | MS.gene38034:CDS |
| TTTGAGTTGAGAAAGGTGAA+GGG | 0.569481 | 5.1:+77480865 | MS.gene38034:CDS |
| GTGACTATGATGAGATTGAA+AGG | 0.569941 | 5.1:+77481040 | MS.gene38034:CDS |
| TCTTTATGATTCAATGTGAA+GGG | 0.570089 | 5.1:+77482199 | MS.gene38034:CDS |
| TTGGGGAATGCGGTTTCGTG+AGG | 0.577003 | 5.1:-77481833 | None:intergenic |
| TTCGTGAGGCCTGTAAAACC+AGG | 0.578182 | 5.1:-77481819 | None:intergenic |
| GAAGAACAATGAACTCGAGT+CGG | 0.583685 | 5.1:+77480837 | MS.gene38034:CDS |
| TACCAATGAAATCCTTATTG+GGG | 0.587082 | 5.1:-77481850 | None:intergenic |
| GACAAGGATGAAGAGAATGT+TGG | 0.590848 | 5.1:+77481018 | MS.gene38034:CDS |
| GAAATCCTTATTGGGGAATG+CGG | 0.598917 | 5.1:-77481843 | None:intergenic |
| CTTCACAAACCCCACATACG+GGG | 0.600813 | 5.1:-77481750 | None:intergenic |
| ATACAATGGTGAATTTGGCC+TGG | 0.606944 | 5.1:+77481801 | MS.gene38034:CDS |
| TGAGCTCTTATGTCATTGAA+GGG | 0.625715 | 5.1:+77481583 | MS.gene38034:CDS |
| TGAGATTGAAAGGGACATTG+TGG | 0.628338 | 5.1:+77481050 | MS.gene38034:CDS |
| TGACTATGATGAGATTGAAA+GGG | 0.639185 | 5.1:+77481041 | MS.gene38034:CDS |
| TTCACAAACCCCACATACGG+GGG | 0.650762 | 5.1:-77481749 | None:intergenic |
| ATAAAGAGATCCGGGTTACG+AGG | 0.661418 | 5.1:-77482183 | None:intergenic |
| CCTTACGTTTAGAAGGCCTG+AGG | 0.667711 | 5.1:-77481724 | None:intergenic |
| TTACGCAATATCTGTCTGTG+TGG | 0.672061 | 5.1:-77482059 | None:intergenic |
| AACATGCAGAAGTGATACAA+TGG | 0.672535 | 5.1:+77481787 | MS.gene38034:CDS |
| TATCGGCAATAGAAATCCAG+AGG | 0.685970 | 5.1:-77481992 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTACAAACTAATAATAATT+TGG | - | chr5.1:77481188-77481207 | None:intergenic | 10.0% |
| !! | TTACAAACTAATAATAATTT+GGG | - | chr5.1:77481187-77481206 | None:intergenic | 10.0% |
| !! | ATATACAAAATAACAAATCC+AGG | - | chr5.1:77481523-77481542 | None:intergenic | 20.0% |
| !! | ATTTCTTTGTATAGGAAATA+GGG | + | chr5.1:77481260-77481279 | MS.gene38034:intron | 20.0% |
| !! | TATAGAAAATAGATAGATAC+TGG | - | chr5.1:77482261-77482280 | None:intergenic | 20.0% |
| !! | TATTTCTTTGTATAGGAAAT+AGG | + | chr5.1:77481259-77481278 | MS.gene38034:intron | 20.0% |
| !! | TGATTCTAATTAGTATTAGT+TGG | + | chr5.1:77481210-77481229 | MS.gene38034:intron | 20.0% |
| !!! | AATATTTGATTTATTGTTCC+TGG | + | chr5.1:77481502-77481521 | MS.gene38034:intron | 20.0% |
| !!! | CAATAGTTTTGTTTTTGATT+TGG | + | chr5.1:77482104-77482123 | MS.gene38034:intron | 20.0% |
| !!! | CTCTTATATTTTGAACATAA+TGG | + | chr5.1:77481384-77481403 | MS.gene38034:intron | 20.0% |
| !!! | GGATTTGTTATTTTGTATAT+TGG | + | chr5.1:77481523-77481542 | MS.gene38034:intron | 20.0% |
| !!! | TTGTTTTTTAAAATAGGACT+AGG | + | chr5.1:77481287-77481306 | MS.gene38034:intron | 20.0% |
| !!! | TTTGGAGAACTTAATTATTT+TGG | + | chr5.1:77482122-77482141 | MS.gene38034:intron | 20.0% |
| ! | ATAAATATGATCCTGACAAA+GGG | + | chr5.1:77482014-77482033 | MS.gene38034:CDS | 25.0% |
| ! | TATAAATATGATCCTGACAA+AGG | + | chr5.1:77482013-77482032 | MS.gene38034:CDS | 25.0% |
| ! | TCTTTATGATTCAATGTGAA+GGG | + | chr5.1:77482199-77482218 | MS.gene38034:CDS | 25.0% |
| ! | TGAATAATATTCAAGGACAT+GGG | - | chr5.1:77481662-77481681 | None:intergenic | 25.0% |
| ! | TGTCAGGATCATATTTATAT+CGG | - | chr5.1:77482012-77482031 | None:intergenic | 25.0% |
| ! | TTACCAATGAAATCCTTATT+GGG | - | chr5.1:77481854-77481873 | None:intergenic | 25.0% |
| ! | TTGAATAATATTCAAGGACA+TGG | - | chr5.1:77481663-77481682 | None:intergenic | 25.0% |
| ! | TTTGTACCATCATACAAAAA+TGG | + | chr5.1:77481360-77481379 | MS.gene38034:intron | 25.0% |
| !! | TAATTAGTATTAGTTGGTAC+TGG | + | chr5.1:77481216-77481235 | MS.gene38034:intron | 25.0% |
| !! | TGATTTTGTTCATTGTCTAT+TGG | + | chr5.1:77481476-77481495 | MS.gene38034:intron | 25.0% |
| !!! | GGAGACTTGTTTTTTAAAAT+AGG | + | chr5.1:77481281-77481300 | MS.gene38034:intron | 25.0% |
| !!! | TCTTTGTTTTACTTTCAGTT+GGG | + | chr5.1:77481690-77481709 | MS.gene38034:intron | 25.0% |
| !!! | TTAGTCATTTTTAAGCAAGA+AGG | - | chr5.1:77482365-77482384 | None:intergenic | 25.0% |
| AAGTGATACAATGGTGAATT+TGG | + | chr5.1:77481796-77481815 | MS.gene38034:CDS | 30.0% | |
| ATTGAATCATAAAGAGATCC+GGG | - | chr5.1:77482194-77482213 | None:intergenic | 30.0% | |
| CAATAAGGATTTCATTGGTA+AGG | + | chr5.1:77481853-77481872 | MS.gene38034:CDS | 30.0% | |
| CATTGAATCATAAAGAGATC+CGG | - | chr5.1:77482195-77482214 | None:intergenic | 30.0% | |
| CCTATACAAAGAAATAGAAC+CGG | - | chr5.1:77481255-77481274 | None:intergenic | 30.0% | |
| CTATACAAAGAAATAGAACC+GGG | - | chr5.1:77481254-77481273 | None:intergenic | 30.0% | |
| CTCTTTATGATTCAATGTGA+AGG | + | chr5.1:77482198-77482217 | MS.gene38034:CDS | 30.0% | |
| CTTACCAATGAAATCCTTAT+TGG | - | chr5.1:77481855-77481874 | None:intergenic | 30.0% | |
| CTTGAATATTATTCAAAGCC+TGG | + | chr5.1:77481667-77481686 | MS.gene38034:intron | 30.0% | |
| GGAGAATGAAAAAAATGCTT+TGG | + | chr5.1:77480945-77480964 | MS.gene38034:CDS | 30.0% | |
| GGTTGTGAAAAATATTGAGT+TGG | + | chr5.1:77480966-77480985 | MS.gene38034:CDS | 30.0% | |
| GTAAACAATTGATCAACATG+TGG | + | chr5.1:77481325-77481344 | MS.gene38034:intron | 30.0% | |
| GTTTGTGAAGAAAATCATTC+CGG | + | chr5.1:77481763-77481782 | MS.gene38034:CDS | 30.0% | |
| TACCAATGAAATCCTTATTG+GGG | - | chr5.1:77481853-77481872 | None:intergenic | 30.0% | |
| TGACTATGATGAGATTGAAA+GGG | + | chr5.1:77481041-77481060 | MS.gene38034:CDS | 30.0% | |
| TTTGTGAAGAAAATCATTCC+GGG | + | chr5.1:77481764-77481783 | MS.gene38034:CDS | 30.0% | |
| ! | AAAGTGCCAAAATCATTATG+AGG | + | chr5.1:77481909-77481928 | MS.gene38034:CDS | 30.0% |
| ! | ACACTTCCTCATAATGATTT+TGG | - | chr5.1:77481918-77481937 | None:intergenic | 30.0% |
| !! | AAGAGTCCATTTTTGTATGA+TGG | - | chr5.1:77481369-77481388 | None:intergenic | 30.0% |
| !! | CAGGCTTTGAATAATATTCA+AGG | - | chr5.1:77481669-77481688 | None:intergenic | 30.0% |
| !! | TCATTTTTAAGCAAGAAGGA+TGG | - | chr5.1:77482361-77482380 | None:intergenic | 30.0% |
| !! | TGGTTTGTGTTTCTTTTTGA+AGG | + | chr5.1:77482142-77482161 | MS.gene38034:intron | 30.0% |
| !!! | CTTTGTTTTACTTTCAGTTG+GGG | + | chr5.1:77481691-77481710 | MS.gene38034:intron | 30.0% |
| !!! | GTCTTTGTTTTACTTTCAGT+TGG | + | chr5.1:77481689-77481708 | MS.gene38034:intron | 30.0% |
| AAAAGGAGCAAGAATGCTAA+AGG | + | chr5.1:77481108-77481127 | MS.gene38034:CDS | 35.0% | |
| AACATGCAGAAGTGATACAA+TGG | + | chr5.1:77481787-77481806 | MS.gene38034:CDS | 35.0% | |
| ATGAGCTCTTATGTCATTGA+AGG | + | chr5.1:77481582-77481601 | MS.gene38034:CDS | 35.0% | |
| CTACAATCAGTGCAAAGAAA+AGG | - | chr5.1:77482410-77482429 | None:intergenic | 35.0% | |
| CTGAAAGTAAAACAAAGACC+AGG | - | chr5.1:77481688-77481707 | None:intergenic | 35.0% | |
| CTTTCTGATCTTGAGAATGT+TGG | + | chr5.1:77481968-77481987 | MS.gene38034:CDS | 35.0% | |
| GAAGTCAAAGTGAAATGAGT+CGG | - | chr5.1:77481640-77481659 | None:intergenic | 35.0% | |
| GTGACTATGATGAGATTGAA+AGG | + | chr5.1:77481040-77481059 | MS.gene38034:CDS | 35.0% | |
| TGAGCTCTTATGTCATTGAA+GGG | + | chr5.1:77481583-77481602 | MS.gene38034:CDS | 35.0% | |
| TTCCCCAATAAGGATTTCAT+TGG | + | chr5.1:77481848-77481867 | MS.gene38034:CDS | 35.0% | |
| TTTACTTTCAGTTGGGGATA+AGG | + | chr5.1:77481697-77481716 | MS.gene38034:intron | 35.0% | |
| ! | CCGGTTCTATTTCTTTGTAT+AGG | + | chr5.1:77481252-77481271 | MS.gene38034:intron | 35.0% |
| ! | TGTTACCTTTTATGATCTCC+CGG | - | chr5.1:77481611-77481630 | None:intergenic | 35.0% |
| ! | TTTTTAATCACCCTTCTTGC+AGG | + | chr5.1:77482333-77482352 | MS.gene38034:intron | 35.0% |
| !! | TAGAATCAGATTTGGTGCTT+TGG | + | chr5.1:77480924-77480943 | MS.gene38034:CDS | 35.0% |
| !! | TTTGAGTTGAGAAAGGTGAA+GGG | + | chr5.1:77480865-77480884 | MS.gene38034:CDS | 35.0% |
| !!! | GAGGAAAAGTTTTGAAGACA+AGG | + | chr5.1:77481002-77481021 | MS.gene38034:CDS | 35.0% |
| !!! | GGAAGTTTTTGAGTTGAGAA+AGG | + | chr5.1:77480858-77480877 | MS.gene38034:CDS | 35.0% |
| !!! | TTTTGAGTTGAGAAAGGTGA+AGG | + | chr5.1:77480864-77480883 | MS.gene38034:CDS | 35.0% |
| AGTTGGAGAAATCAGTGAAG+AGG | + | chr5.1:77480983-77481002 | MS.gene38034:CDS | 40.0% | |
| ATACAATGGTGAATTTGGCC+TGG | + | chr5.1:77481801-77481820 | MS.gene38034:CDS | 40.0% | |
| CAAATGAACCACCCAACAAA+AGG | + | chr5.1:77481091-77481110 | MS.gene38034:CDS | 40.0% | |
| GAAATCCTTATTGGGGAATG+CGG | - | chr5.1:77481846-77481865 | None:intergenic | 40.0% | |
| GAAGAACAATGAACTCGAGT+CGG | + | chr5.1:77480837-77480856 | MS.gene38034:CDS | 40.0% | |
| GACAAGGATGAAGAGAATGT+TGG | + | chr5.1:77481018-77481037 | MS.gene38034:CDS | 40.0% | |
| GAGAAAGGTGAAGGGAAAAT+GGG | + | chr5.1:77480873-77480892 | MS.gene38034:CDS | 40.0% | |
| GCTGAGCTTAGAATCAGATT+TGG | + | chr5.1:77480916-77480935 | MS.gene38034:CDS | 40.0% | |
| GTGAAGGGAGATGCAAAAAA+TGG | + | chr5.1:77482214-77482233 | MS.gene38034:CDS | 40.0% | |
| TATCGGCAATAGAAATCCAG+AGG | - | chr5.1:77481995-77482014 | None:intergenic | 40.0% | |
| TGAGAAAGGTGAAGGGAAAA+TGG | + | chr5.1:77480872-77480891 | MS.gene38034:CDS | 40.0% | |
| TGAGATTGAAAGGGACATTG+TGG | + | chr5.1:77481050-77481069 | MS.gene38034:CDS | 40.0% | |
| TTACGCAATATCTGTCTGTG+TGG | - | chr5.1:77482062-77482081 | None:intergenic | 40.0% | |
| TTCTTCACAAACCCCACATA+CGG | - | chr5.1:77481755-77481774 | None:intergenic | 40.0% | |
| ! | AAAGGTGCATCATCATCATC+AGG | + | chr5.1:77481126-77481145 | MS.gene38034:CDS | 40.0% |
| ! | AGCATTCTTGCTCCTTTTGT+TGG | - | chr5.1:77481106-77481125 | None:intergenic | 40.0% |
| ! | GCATTCTTGCTCCTTTTGTT+GGG | - | chr5.1:77481105-77481124 | None:intergenic | 40.0% |
| ! | GTTACCTTTTATGATCTCCC+GGG | - | chr5.1:77481610-77481629 | None:intergenic | 40.0% |
| !!! | TGAATTTGGCCTGGTTTTAC+AGG | + | chr5.1:77481810-77481829 | MS.gene38034:CDS | 40.0% |
| AAGGATGGTACCTGCAAGAA+GGG | - | chr5.1:77482346-77482365 | None:intergenic | 45.0% | |
| ATAAAGAGATCCGGGTTACG+AGG | - | chr5.1:77482186-77482205 | None:intergenic | 45.0% | |
| ATCTGTCTGTGTGGCAGAAT+TGG | - | chr5.1:77482053-77482072 | None:intergenic | 45.0% | |
| CTTATGTCATTGAAGGGTCC+CGG | + | chr5.1:77481589-77481608 | MS.gene38034:CDS | 45.0% | |
| GCAAAGATAGTCCCTTTGTC+AGG | - | chr5.1:77482028-77482047 | None:intergenic | 45.0% | |
| GGTGGTTCATTTGTCTGCAA+AGG | - | chr5.1:77481084-77481103 | None:intergenic | 45.0% | |
| GTATCACTTCTGCATGTTCC+CGG | - | chr5.1:77481785-77481804 | None:intergenic | 45.0% | |
| TCTGTCTGTGTGGCAGAATT+GGG | - | chr5.1:77482052-77482071 | None:intergenic | 45.0% | |
| TCTTCACAAACCCCACATAC+GGG | - | chr5.1:77481754-77481773 | None:intergenic | 45.0% | |
| TCTTGAGAATGTTGGTCCTC+TGG | + | chr5.1:77481976-77481995 | MS.gene38034:CDS | 45.0% | |
| TTATGTCATTGAAGGGTCCC+GGG | + | chr5.1:77481590-77481609 | MS.gene38034:CDS | 45.0% | |
| ! | TTCTTGCTCCTTTTGTTGGG+TGG | - | chr5.1:77481102-77481121 | None:intergenic | 45.0% |
| !!! | TACTGGTTTTGCTTGTTGCC+CGG | + | chr5.1:77481233-77481252 | MS.gene38034:intron | 45.0% |
| !! | TTAAAAATTAATTGAATTAA+AGG | - | chr5.1:77482320-77482339 | None:intergenic | 5.0% |
| ATGTCAGTTGCCTCGTAACC+CGG | + | chr5.1:77482173-77482192 | MS.gene38034:CDS | 50.0% | |
| CCTCAGGCCTTCTAAACGTA+AGG | + | chr5.1:77481724-77481743 | MS.gene38034:CDS | 50.0% | |
| CCTTACGTTTAGAAGGCCTG+AGG | - | chr5.1:77481727-77481746 | None:intergenic | 50.0% | |
| CGAAACCGCATTCCCCAATA+AGG | + | chr5.1:77481838-77481857 | MS.gene38034:CDS | 50.0% | |
| CTTCACAAACCCCACATACG+GGG | - | chr5.1:77481753-77481772 | None:intergenic | 50.0% | |
| GAAGGATGGTACCTGCAAGA+AGG | - | chr5.1:77482347-77482366 | None:intergenic | 50.0% | |
| TTCACAAACCCCACATACGG+GGG | - | chr5.1:77481752-77481771 | None:intergenic | 50.0% | |
| TTCGTGAGGCCTGTAAAACC+AGG | - | chr5.1:77481822-77481841 | None:intergenic | 50.0% | |
| TTGGGGATAAGGTTCTCCTC+AGG | + | chr5.1:77481708-77481727 | MS.gene38034:CDS | 50.0% | |
| GGGGGCTCCTTACGTTTAGA+AGG | - | chr5.1:77481734-77481753 | None:intergenic | 55.0% | |
| GGGTCCCGGGAGATCATAAA+AGG | + | chr5.1:77481603-77481622 | MS.gene38034:CDS | 55.0% | |
| TTGGGGAATGCGGTTTCGTG+AGG | - | chr5.1:77481836-77481855 | None:intergenic | 55.0% | |
| ACGTAAGGAGCCCCCGTATG+TGG | + | chr5.1:77481739-77481758 | MS.gene38034:CDS | 60.0% | |
| CGTAAGGAGCCCCCGTATGT+GGG | + | chr5.1:77481740-77481759 | MS.gene38034:CDS | 60.0% | |
| GTAAGGAGCCCCCGTATGTG+GGG | + | chr5.1:77481741-77481760 | MS.gene38034:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 77480817 | 77482439 | 77480817 | ID=MS.gene38034 |
| chr5.1 | mRNA | 77480817 | 77482439 | 77480817 | ID=MS.gene38034.t1;Parent=MS.gene38034 |
| chr5.1 | exon | 77480817 | 77481147 | 77480817 | ID=MS.gene38034.t1.exon1;Parent=MS.gene38034.t1 |
| chr5.1 | CDS | 77480817 | 77481147 | 77480817 | ID=cds.MS.gene38034.t1;Parent=MS.gene38034.t1 |
| chr5.1 | exon | 77481580 | 77481624 | 77481580 | ID=MS.gene38034.t1.exon2;Parent=MS.gene38034.t1 |
| chr5.1 | CDS | 77481580 | 77481624 | 77481580 | ID=cds.MS.gene38034.t1;Parent=MS.gene38034.t1 |
| chr5.1 | exon | 77481708 | 77482077 | 77481708 | ID=MS.gene38034.t1.exon3;Parent=MS.gene38034.t1 |
| chr5.1 | CDS | 77481708 | 77482077 | 77481708 | ID=cds.MS.gene38034.t1;Parent=MS.gene38034.t1 |
| chr5.1 | exon | 77482164 | 77482235 | 77482164 | ID=MS.gene38034.t1.exon4;Parent=MS.gene38034.t1 |
| chr5.1 | CDS | 77482164 | 77482235 | 77482164 | ID=cds.MS.gene38034.t1;Parent=MS.gene38034.t1 |
| chr5.1 | exon | 77482355 | 77482439 | 77482355 | ID=MS.gene38034.t1.exon5;Parent=MS.gene38034.t1 |
| chr5.1 | CDS | 77482355 | 77482439 | 77482355 | ID=cds.MS.gene38034.t1;Parent=MS.gene38034.t1 |
| Gene Sequence |
| Protein sequence |
