AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene38063

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38063.t1 MTR_5g097490 92.839 391 23 1 1 386 1 391 0.0 724
MS.gene38063.t1 MTR_5g097500 53.628 317 130 4 1 317 1 300 9.02e-109 322
MS.gene38063.t1 MTR_7g071120 45.923 233 116 5 85 310 158 387 6.05e-56 191
MS.gene38063.t1 MTR_3g056100 43.777 233 121 3 84 309 91 320 6.38e-56 190
MS.gene38063.t1 MTR_3g056100 44.318 88 48 1 219 306 71 157 2.08e-14 74.7
MS.gene38063.t1 MTR_5g094430 42.570 249 128 4 91 327 65 310 4.43e-55 187
MS.gene38063.t1 MTR_3g056100 43.777 233 121 3 84 309 235 464 4.57e-55 191
MS.gene38063.t1 MTR_3g056100 44.318 88 48 1 219 306 215 301 2.16e-14 75.1
MS.gene38063.t1 MTR_3g056100 42.510 247 117 5 84 309 91 333 6.43e-55 187
MS.gene38063.t1 MTR_3g056100 44.318 88 48 1 219 306 71 157 2.03e-14 74.7
MS.gene38063.t1 MTR_5g094430 42.570 249 128 4 91 327 87 332 7.14e-55 187
MS.gene38063.t1 MTR_3g056100 42.510 247 117 5 84 309 235 477 4.74e-54 188
MS.gene38063.t1 MTR_3g056100 44.318 88 48 1 219 306 215 301 2.34e-14 75.1
MS.gene38063.t1 MTR_5g094430 42.915 247 126 4 91 325 199 442 6.31e-54 187
MS.gene38063.t1 MTR_3g031220 41.887 265 125 7 80 323 185 441 3.17e-52 181
MS.gene38063.t1 MTR_5g074400 45.000 240 110 6 93 310 244 483 1.01e-51 182
MS.gene38063.t1 MTR_5g074400 44.944 89 48 1 218 306 214 301 3.62e-15 77.4
MS.gene38063.t1 MTR_7g080000 38.542 288 124 7 89 328 231 513 1.18e-49 178
MS.gene38063.t1 MTR_5g042920 38.571 280 149 5 52 309 104 382 6.04e-49 171
MS.gene38063.t1 MTR_5g042920 48.485 66 33 1 90 154 318 383 1.80e-11 65.9
MS.gene38063.t1 MTR_7g011820 38.408 289 122 7 84 327 220 497 1.33e-48 172
MS.gene38063.t1 MTR_4g013260 40.927 259 131 6 86 329 176 427 1.77e-48 171
MS.gene38063.t1 MTR_7g080020 39.427 279 111 5 89 309 277 555 2.12e-48 175
MS.gene38063.t1 MTR_4g082580 40.359 223 109 4 88 309 141 340 4.88e-45 160
MS.gene38063.t1 MTR_4g082580 45.570 79 37 2 82 154 263 341 3.10e-12 67.8
MS.gene38063.t1 MTR_7g100510 38.462 234 121 4 93 306 190 420 3.57e-44 159
MS.gene38063.t1 MTR_7g100510 34.921 126 70 3 248 370 190 306 6.54e-15 76.3
MS.gene38063.t1 MTR_7g100510 40.217 92 49 2 70 155 334 425 1.42e-12 68.9
MS.gene38063.t1 MTR_4g130900 36.250 240 117 8 91 303 185 415 1.11e-33 131
MS.gene38063.t1 MTR_3g031220 38.756 209 99 7 80 267 185 385 1.62e-29 117
MS.gene38063.t1 MTR_3g031220 41.489 94 52 2 215 308 168 258 8.99e-15 75.5
MS.gene38063.t1 MTR_3g009470 58.000 100 41 1 210 309 459 557 2.61e-29 120
MS.gene38063.t1 MTR_3g009470 61.667 60 23 0 91 150 279 338 8.50e-20 91.7
MS.gene38063.t1 MTR_3g009470 46.465 99 40 4 215 306 246 338 4.53e-14 74.3
MS.gene38063.t1 MTR_3g009470 45.833 72 38 1 90 160 493 564 8.22e-12 67.4
MS.gene38063.t1 MTR_4g021780 53.000 100 46 1 81 180 12 110 9.00e-28 106
MS.gene38063.t1 MTR_1g015140 62.857 70 26 0 234 303 89 158 3.71e-25 100
MS.gene38063.t1 MTR_7g110720 48.889 90 44 2 228 315 170 259 3.67e-24 103
MS.gene38063.t1 MTR_7g110720 45.588 68 35 2 90 155 187 254 1.91e-11 65.5
MS.gene38063.t1 MTR_7g110720 48.889 90 44 2 228 315 197 286 5.07e-24 103
MS.gene38063.t1 MTR_7g110720 45.588 68 35 2 90 155 214 281 2.24e-11 65.5
MS.gene38063.t1 MTR_3g104750 60.000 70 28 0 234 303 91 160 2.35e-23 95.9
MS.gene38063.t1 MTR_4g132430 50.526 95 40 3 221 308 96 190 2.65e-23 100
MS.gene38063.t1 MTR_2g088000 52.326 86 39 2 232 315 334 419 7.05e-23 100
MS.gene38063.t1 MTR_4g132430 50.526 95 40 3 221 308 230 324 1.18e-22 99.8
MS.gene38063.t1 MTR_3g053330 40.517 116 66 3 202 315 207 321 1.30e-22 99.4
MS.gene38063.t1 MTR_3g053330 47.619 63 31 2 90 150 249 311 9.17e-11 63.5
MS.gene38063.t1 MTR_4g094412 53.086 81 37 1 229 308 216 296 1.60e-22 99.4
MS.gene38063.t1 MTR_4g094412 53.086 81 37 1 229 308 225 305 1.76e-22 99.4
MS.gene38063.t1 MTR_4g094588 55.056 89 36 2 234 321 165 250 8.04e-22 95.5
MS.gene38063.t1 MTR_4g094588 51.515 66 23 2 92 152 178 239 2.74e-12 67.8
MS.gene38063.t1 MTR_7g109800 57.333 75 32 0 232 306 130 204 9.52e-22 94.7
MS.gene38063.t1 MTR_7g109800 50.000 60 29 1 92 150 145 204 6.58e-11 63.2
MS.gene38063.t1 MTR_8g092010 48.387 93 46 1 216 306 75 167 1.97e-21 91.3
MS.gene38063.t1 MTR_4g049790 47.674 86 43 2 232 315 297 382 2.20e-21 96.3
MS.gene38063.t1 MTR_2g023930 48.913 92 40 3 217 306 280 366 2.23e-21 96.3
MS.gene38063.t1 MTR_2g033820 56.579 76 33 0 232 307 188 263 2.49e-21 94.7
MS.gene38063.t1 MTR_2g033820 52.542 59 27 1 93 150 204 262 6.55e-12 67.0
MS.gene38063.t1 MTR_5g091390 58.108 74 31 0 234 307 144 217 5.64e-21 92.8
MS.gene38063.t1 MTR_8g007270 52.703 74 35 0 232 305 139 212 7.04e-21 90.9
MS.gene38063.t1 MTR_8g007270 49.254 67 32 2 90 154 152 218 3.59e-11 63.2
MS.gene38063.t1 MTR_3g095080 51.351 74 36 0 232 305 129 202 2.18e-20 89.4
MS.gene38063.t1 MTR_3g095080 51.351 74 36 0 232 305 153 226 2.33e-20 89.7
MS.gene38063.t1 MTR_1g013790 39.062 128 57 5 234 340 86 213 3.09e-20 89.7
MS.gene38063.t1 MTR_8g096730 39.175 97 57 1 207 303 32 126 5.11e-20 86.3
MS.gene38063.t1 MTR_8g096730 50.000 64 31 1 90 152 68 131 3.38e-13 67.0
MS.gene38063.t1 MTR_7g028415 55.224 67 30 0 237 303 83 149 7.46e-20 86.3
MS.gene38063.t1 MTR_7g028415 48.333 60 30 1 90 148 91 150 3.05e-12 65.1
MS.gene38063.t1 MTR_7g028710 55.224 67 30 0 237 303 83 149 7.46e-20 86.3
MS.gene38063.t1 MTR_7g028710 48.333 60 30 1 90 148 91 150 3.05e-12 65.1
MS.gene38063.t1 MTR_3g009470 61.667 60 23 0 91 150 279 338 7.67e-20 91.7
MS.gene38063.t1 MTR_3g009470 46.465 99 40 4 215 306 246 338 4.43e-14 73.9
MS.gene38063.t1 MTR_3g009470 60.345 58 22 1 210 267 459 515 3.17e-11 65.1
MS.gene38063.t1 MTR_4g107970 46.512 86 45 1 222 306 153 238 8.43e-20 91.3
MS.gene38063.t1 MTR_3g106060 52.703 74 32 3 233 303 122 195 8.66e-20 89.0
MS.gene38063.t1 MTR_1g077780 47.368 76 40 0 232 307 47 122 9.42e-20 85.5
MS.gene38063.t1 MTR_4g107970 46.512 86 45 1 222 306 230 315 9.47e-20 91.7
MS.gene38063.t1 MTR_7g079010 54.286 70 32 0 234 303 128 197 1.34e-19 87.0
MS.gene38063.t1 MTR_7g079010 51.667 60 28 1 90 148 139 198 2.43e-13 69.3
MS.gene38063.t1 MTR_7g009730 47.619 84 43 1 221 303 193 276 1.49e-19 90.9
MS.gene38063.t1 MTR_1g086790 49.438 89 38 1 232 313 143 231 2.02e-19 88.6
MS.gene38063.t1 MTR_1g086790 40.659 91 49 2 92 177 158 248 8.63e-13 68.9
MS.gene38063.t1 MTR_5g043880 58.571 70 29 0 234 303 111 180 2.10e-19 87.8
MS.gene38063.t1 MTR_5g043880 54.386 57 25 1 92 147 124 180 1.92e-11 64.7
MS.gene38063.t1 MTR_2g045360 44.898 98 48 3 233 328 197 290 2.36e-19 89.7
MS.gene38063.t1 MTR_3g095040 51.351 74 36 0 234 307 105 178 2.49e-19 85.9
MS.gene38063.t1 MTR_3g095040 42.667 75 42 1 89 162 115 189 2.19e-11 63.2
MS.gene38063.t1 MTR_4g122530 49.333 75 38 0 233 307 194 268 2.87e-19 89.4
MS.gene38063.t1 MTR_6g086555 38.095 126 77 1 182 306 141 266 3.22e-19 89.0
MS.gene38063.t1 MTR_4g049760 45.055 91 49 1 218 307 261 351 3.95e-19 89.4
MS.gene38063.t1 MTR_1g013760 53.425 73 31 2 234 303 125 197 4.08e-19 87.0
MS.gene38063.t1 MTR_7g062220 57.377 61 26 0 244 304 121 181 1.61e-18 85.9
MS.gene38063.t1 MTR_8g092140 50.667 75 36 1 232 305 144 218 1.65e-18 84.3
MS.gene38063.t1 MTR_4g007060 51.948 77 34 3 233 306 112 188 4.34e-18 84.0
MS.gene38063.t1 MTR_4g007060 44.444 63 33 2 90 150 126 188 4.19e-11 63.5
MS.gene38063.t1 MTR_4g007060 51.948 77 34 3 233 306 146 222 6.76e-18 84.0
MS.gene38063.t1 MTR_4g007060 44.444 63 33 2 90 150 160 222 5.74e-11 63.5
MS.gene38063.t1 MTR_1g078260 40.000 95 56 1 212 305 212 306 2.25e-17 84.0
MS.gene38063.t1 MTR_2g105060 50.000 78 36 2 233 307 78 155 2.32e-17 81.3
MS.gene38063.t1 MTR_2g105060 50.000 78 36 2 233 307 153 230 3.62e-17 82.0
MS.gene38063.t1 MTR_4g094908 54.386 57 25 1 248 303 267 323 3.86e-16 79.3
MS.gene38063.t1 MTR_1g009613 49.296 71 35 1 234 303 249 319 5.83e-16 78.6
MS.gene38063.t1 MTR_5g016610 47.887 71 36 1 234 303 186 256 9.88e-16 77.0
MS.gene38063.t1 MTR_1g070455 55.172 58 25 1 248 304 294 351 4.56e-15 76.3
MS.gene38063.t1 MTR_4g127040 46.479 71 37 1 234 303 232 302 7.04e-15 75.1
MS.gene38063.t1 MTR_7g109600 38.261 115 58 4 195 308 13 115 1.34e-14 73.6
MS.gene38063.t1 MTR_8g087000 50.000 64 31 1 247 309 77 140 2.04e-14 72.8
MS.gene38063.t1 MTR_8g087000 50.000 64 31 1 247 309 76 139 2.15e-14 72.8
MS.gene38063.t1 MTR_4g047580 43.590 78 43 1 232 308 266 343 7.71e-14 73.2
MS.gene38063.t1 MTR_8g098945 45.833 72 38 1 239 309 121 192 1.04e-13 71.2
MS.gene38063.t1 MTR_2g024350 51.471 68 31 2 88 153 4 71 1.43e-13 70.1
MS.gene38063.t1 MTR_2g024350 49.180 61 30 1 248 307 9 69 2.68e-13 69.3
MS.gene38063.t1 MTR_0117s0040 35.385 130 56 5 178 303 26 131 1.50e-13 70.1
MS.gene38063.t1 MTR_2g083870 45.122 82 38 2 226 306 65 140 1.78e-13 70.5
MS.gene38063.t1 MTR_1g099600 41.772 79 44 2 232 309 171 248 2.13e-13 70.9
MS.gene38063.t1 MTR_8g067650 46.377 69 33 3 88 153 335 402 2.93e-13 71.6
MS.gene38063.t1 MTR_8g067650 42.500 80 45 1 230 308 322 401 2.39e-12 68.6
MS.gene38063.t1 MTR_5g044695 53.448 58 22 1 221 273 46 103 3.31e-13 65.9
MS.gene38063.t1 MTR_8g067635 48.529 68 31 3 89 153 346 412 3.86e-13 71.2
MS.gene38063.t1 MTR_8g067635 42.500 80 45 1 230 308 332 411 4.08e-12 67.8
MS.gene38063.t1 MTR_2g016770 50.820 61 28 2 248 306 36 96 3.88e-13 68.6
MS.gene38063.t1 MTR_5g074200 30.519 154 86 2 1 154 150 282 4.85e-13 69.7
MS.gene38063.t1 MTR_5g074200 45.000 60 32 1 247 306 220 278 1.37e-11 65.5
MS.gene38063.t1 MTR_2g016770 50.820 61 28 2 248 306 28 88 5.55e-13 67.8
MS.gene38063.t1 MTR_8g028565 37.624 101 58 2 214 309 118 218 6.36e-13 69.7
MS.gene38063.t1 MTR_2g024380 49.180 61 30 1 248 307 252 312 7.35e-13 70.1
MS.gene38063.t1 MTR_2g024380 49.275 69 31 3 88 153 247 314 2.52e-12 68.6
MS.gene38063.t1 MTR_4g007060 51.471 68 30 3 233 297 146 213 1.34e-12 67.4
MS.gene38063.t1 MTR_7g079040 46.875 64 33 1 245 307 152 215 3.99e-12 67.0
MS.gene38063.t1 MTR_3g108960 43.836 73 40 1 232 303 299 371 5.75e-12 67.0
MS.gene38063.t1 MTR_2g032030 47.619 63 32 1 248 309 268 330 7.53e-12 67.0
MS.gene38063.t1 MTR_2g032030 49.231 65 31 2 88 150 263 327 8.90e-11 63.5
MS.gene38063.t1 MTR_6g038890 53.448 58 22 1 221 273 157 214 7.92e-12 64.7
MS.gene38063.t1 MTR_2g032030 47.619 63 32 1 248 309 268 330 8.21e-12 67.0
MS.gene38063.t1 MTR_8g027860 37.500 96 55 3 228 319 116 210 1.26e-11 65.9
MS.gene38063.t1 MTR_8g069935 44.928 69 34 2 248 315 332 397 4.03e-11 64.7
MS.gene38063.t1 MTR_3g090860 45.902 61 30 1 244 301 130 190 6.83e-11 63.5
MS.gene38063.t1 MTR_5g067680 47.368 57 27 1 248 301 203 259 7.76e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38063.t1 AT2G04880 44.737 266 111 7 76 314 94 350 1.86e-65 215
MS.gene38063.t1 AT2G04880 43.772 281 116 7 76 314 94 374 2.00e-64 213
MS.gene38063.t1 AT4G26640 43.548 248 109 6 83 309 30 267 8.06e-53 180
MS.gene38063.t1 AT4G26640 43.548 248 109 6 83 309 30 267 8.06e-53 180
MS.gene38063.t1 AT4G26640 43.548 248 109 6 83 309 30 267 8.06e-53 180
MS.gene38063.t1 AT4G26640 43.548 248 109 6 83 309 30 267 8.06e-53 180
MS.gene38063.t1 AT4G26640 43.548 248 109 6 83 309 134 371 6.78e-52 180
MS.gene38063.t1 AT4G26640 42.917 240 110 4 83 303 166 397 1.24e-51 180
MS.gene38063.t1 AT4G26640 43.548 248 109 6 83 309 206 443 1.85e-51 181
MS.gene38063.t1 AT2G38470 42.339 248 108 5 92 310 184 425 6.28e-51 178
MS.gene38063.t1 AT2G38470 53.226 62 28 1 90 150 360 421 5.07e-12 67.8
MS.gene38063.t1 AT2G30250 42.194 237 125 6 83 309 157 391 5.13e-49 170
MS.gene38063.t1 AT5G07100 41.494 241 100 6 74 312 5 206 1.97e-47 161
MS.gene38063.t1 AT5G07100 41.494 241 100 6 74 312 5 206 1.97e-47 161
MS.gene38063.t1 AT5G07100 41.494 241 100 6 74 312 5 206 1.97e-47 161
MS.gene38063.t1 AT5G07100 41.494 241 100 6 74 312 5 206 1.97e-47 161
MS.gene38063.t1 AT4G26440 38.132 257 118 3 93 309 179 434 2.37e-47 170
MS.gene38063.t1 AT4G26440 50.820 61 29 1 246 306 177 236 6.28e-13 70.5
MS.gene38063.t1 AT1G13960 40.249 241 119 4 88 303 72 312 3.45e-47 165
MS.gene38063.t1 AT5G07100 41.494 241 100 6 74 312 98 299 4.38e-47 163
MS.gene38063.t1 AT4G30935 35.786 299 166 9 33 307 95 391 6.14e-47 167
MS.gene38063.t1 AT1G13960 40.249 241 119 4 88 303 225 465 3.94e-46 165
MS.gene38063.t1 AT3G01080 40.741 216 112 3 88 303 163 362 4.41e-45 160
MS.gene38063.t1 AT3G01080 56.250 64 27 1 246 309 166 228 1.10e-14 75.5
MS.gene38063.t1 AT3G01080 50.000 62 30 1 90 150 304 365 9.00e-11 63.5
MS.gene38063.t1 AT3G01080 40.741 216 112 3 88 303 201 400 6.20e-45 161
MS.gene38063.t1 AT3G01080 56.250 64 27 1 246 309 204 266 1.48e-14 75.5
MS.gene38063.t1 AT3G01080 50.000 62 30 1 90 150 342 403 8.90e-11 63.5
MS.gene38063.t1 AT2G03340 39.431 246 111 5 88 309 246 477 1.33e-44 161
MS.gene38063.t1 AT2G03340 56.923 65 27 1 246 310 249 312 8.74e-17 82.4
MS.gene38063.t1 AT2G03340 50.794 63 30 1 93 154 416 478 6.51e-12 67.4
MS.gene38063.t1 AT2G37260 35.165 273 112 7 93 316 86 342 1.13e-39 144
MS.gene38063.t1 AT2G37260 35.165 273 112 7 93 316 84 340 1.24e-39 144
MS.gene38063.t1 AT2G37260 35.165 273 112 7 93 316 166 422 2.22e-39 145
MS.gene38063.t1 AT5G56270 56.000 100 44 0 210 309 450 549 3.47e-30 122
MS.gene38063.t1 AT5G56270 55.932 59 25 1 248 306 274 331 5.76e-15 77.0
MS.gene38063.t1 AT5G56270 53.968 63 29 0 91 153 272 334 9.45e-15 76.3
MS.gene38063.t1 AT5G56270 50.000 64 31 1 90 152 485 548 2.93e-11 65.5
MS.gene38063.t1 AT4G12020 33.495 206 103 3 88 267 464 661 2.94e-25 108
MS.gene38063.t1 AT4G12020 50.820 61 29 1 246 306 467 526 1.46e-12 70.1
MS.gene38063.t1 AT4G12020 33.495 206 103 3 88 267 464 661 3.11e-25 108
MS.gene38063.t1 AT4G12020 50.820 61 29 1 246 306 467 526 1.52e-12 70.1
MS.gene38063.t1 AT4G12020 33.495 206 103 3 88 267 464 661 3.19e-25 108
MS.gene38063.t1 AT4G12020 50.820 61 29 1 246 306 467 526 1.42e-12 70.1
MS.gene38063.t1 AT4G12020 33.495 206 103 3 88 267 464 661 3.19e-25 108
MS.gene38063.t1 AT4G12020 50.820 61 29 1 246 306 467 526 1.42e-12 70.1
MS.gene38063.t1 AT4G12020 33.495 206 103 3 88 267 464 661 3.26e-25 108
MS.gene38063.t1 AT4G12020 50.820 61 29 1 246 306 467 526 1.61e-12 69.7
MS.gene38063.t1 AT4G12020 33.495 206 103 3 88 267 464 661 3.32e-25 108
MS.gene38063.t1 AT4G12020 50.820 61 29 1 246 306 467 526 1.53e-12 70.1
MS.gene38063.t1 AT4G12020 33.495 206 103 3 88 267 464 661 3.32e-25 108
MS.gene38063.t1 AT4G12020 50.820 61 29 1 246 306 467 526 1.53e-12 70.1
MS.gene38063.t1 AT4G12020 33.495 206 103 3 88 267 464 661 3.35e-25 108
MS.gene38063.t1 AT4G12020 50.820 61 29 1 246 306 467 526 1.59e-12 69.7
MS.gene38063.t1 AT4G12020 33.495 206 103 3 88 267 464 661 3.92e-25 108
MS.gene38063.t1 AT4G12020 50.820 61 29 1 246 306 467 526 1.63e-12 69.7
MS.gene38063.t1 AT4G12020 33.495 206 103 3 88 267 397 594 4.23e-25 108
MS.gene38063.t1 AT4G12020 50.820 61 29 1 246 306 400 459 1.70e-12 69.7
MS.gene38063.t1 AT4G12020 33.495 206 103 3 88 267 464 661 5.08e-25 107
MS.gene38063.t1 AT4G12020 50.820 61 29 1 246 306 467 526 1.88e-12 69.7
MS.gene38063.t1 AT5G26170 57.143 70 30 0 234 303 100 169 2.24e-23 96.3
MS.gene38063.t1 AT4G04450 48.387 93 46 2 225 315 176 268 9.88e-23 99.8
MS.gene38063.t1 AT4G04450 47.619 63 31 2 90 150 196 258 2.57e-11 65.5
MS.gene38063.t1 AT5G64810 57.143 70 30 0 234 303 97 166 1.44e-22 94.7
MS.gene38063.t1 AT2G47260 57.333 75 32 0 232 306 159 233 1.68e-22 97.4
MS.gene38063.t1 AT4G04450 48.387 93 46 2 225 315 270 362 2.24e-22 99.4
MS.gene38063.t1 AT4G04450 47.619 63 31 2 90 150 290 352 4.66e-11 64.7
MS.gene38063.t1 AT4G22070 49.425 87 42 2 222 306 272 358 2.55e-22 99.0
MS.gene38063.t1 AT4G22070 47.619 63 31 2 90 150 295 357 5.65e-11 64.3
MS.gene38063.t1 AT4G22070 49.425 87 42 2 222 306 272 358 2.55e-22 99.0
MS.gene38063.t1 AT4G22070 47.619 63 31 2 90 150 295 357 5.65e-11 64.3
MS.gene38063.t1 AT4G22070 49.425 87 42 2 222 306 272 358 2.55e-22 99.0
MS.gene38063.t1 AT4G22070 47.619 63 31 2 90 150 295 357 5.65e-11 64.3
MS.gene38063.t1 AT4G22070 49.425 87 42 2 222 306 272 358 2.55e-22 99.0
MS.gene38063.t1 AT4G22070 47.619 63 31 2 90 150 295 357 5.65e-11 64.3
MS.gene38063.t1 AT1G68150 52.500 80 37 1 230 308 218 297 4.01e-22 97.1
MS.gene38063.t1 AT4G01720 54.321 81 35 2 228 306 220 300 7.35e-22 97.4
MS.gene38063.t1 AT1G55600 56.000 75 32 1 234 307 294 368 9.64e-22 97.1
MS.gene38063.t1 AT1G55600 43.421 76 34 2 76 150 299 366 6.93e-11 63.9
MS.gene38063.t1 AT1G62300 47.059 102 49 3 210 306 272 373 1.50e-21 96.7
MS.gene38063.t1 AT1G62300 47.619 63 31 2 90 150 310 372 7.06e-11 64.3
MS.gene38063.t1 AT2G44745 52.703 74 35 0 232 305 130 203 1.59e-21 92.4
MS.gene38063.t1 AT2G44745 46.575 73 38 1 90 161 143 215 2.76e-13 68.9
MS.gene38063.t1 AT4G18170 58.750 80 32 1 232 310 157 236 2.17e-21 94.0
MS.gene38063.t1 AT4G18170 51.667 60 28 1 92 150 172 231 3.73e-11 64.3
MS.gene38063.t1 AT1G29860 56.250 80 34 1 232 310 121 200 2.79e-21 93.2
MS.gene38063.t1 AT1G29860 48.387 62 31 1 92 152 136 197 8.08e-11 62.8
MS.gene38063.t1 AT2G46130 55.714 70 31 0 234 303 17 86 4.96e-21 87.8
MS.gene38063.t1 AT2G46130 43.750 80 43 2 90 167 28 107 1.96e-13 66.6
MS.gene38063.t1 AT5G49520 55.000 80 35 1 232 310 206 285 9.71e-21 93.6
MS.gene38063.t1 AT5G49520 50.847 59 28 1 93 150 222 280 5.22e-11 64.3
MS.gene38063.t1 AT5G13080 42.105 95 55 0 209 303 29 123 1.38e-20 87.8
MS.gene38063.t1 AT5G13080 48.438 64 32 1 90 152 65 128 1.23e-12 65.5
MS.gene38063.t1 AT4G39410 54.054 74 34 0 232 305 208 281 2.41e-20 90.9
MS.gene38063.t1 AT5G46350 56.579 76 33 0 234 309 170 245 3.13e-20 90.9
MS.gene38063.t1 AT5G41570 51.429 70 34 0 234 303 85 154 4.46e-20 87.4
MS.gene38063.t1 AT5G41570 40.449 89 47 2 90 177 96 179 1.25e-13 69.3
MS.gene38063.t1 AT1G64000 51.429 70 34 0 234 303 101 170 5.17e-20 87.4
MS.gene38063.t1 AT1G64000 51.613 62 29 1 88 148 110 171 1.26e-13 69.7
MS.gene38063.t1 AT5G15130 52.000 75 35 1 233 306 213 287 1.02e-19 91.3
MS.gene38063.t1 AT5G15130 52.000 75 35 1 233 306 171 245 1.16e-19 90.9
MS.gene38063.t1 AT3G62340 44.737 114 56 2 234 342 105 216 3.71e-19 87.0
MS.gene38063.t1 AT3G62340 52.542 59 27 1 93 150 119 177 1.69e-11 64.7
MS.gene38063.t1 AT1G69310 57.143 70 30 0 234 303 134 203 4.11e-19 87.0
MS.gene38063.t1 AT1G69310 52.632 57 26 1 92 147 147 203 7.14e-11 63.2
MS.gene38063.t1 AT1G69310 57.143 70 30 0 234 303 134 203 4.11e-19 87.0
MS.gene38063.t1 AT1G69310 52.632 57 26 1 92 147 147 203 7.14e-11 63.2
MS.gene38063.t1 AT1G69310 57.143 70 30 0 234 303 134 203 4.11e-19 87.0
MS.gene38063.t1 AT1G69310 52.632 57 26 1 92 147 147 203 7.14e-11 63.2
MS.gene38063.t1 AT3G01970 50.704 71 35 0 233 303 51 121 5.18e-19 83.6
MS.gene38063.t1 AT4G31800 49.275 69 34 1 239 306 103 171 2.19e-18 84.3
MS.gene38063.t1 AT4G31800 49.275 69 34 1 239 306 168 236 3.08e-18 85.1
MS.gene38063.t1 AT1G18860 50.000 76 37 1 232 306 224 299 3.08e-18 86.7
MS.gene38063.t1 AT5G43290 33.582 134 79 1 243 376 110 233 1.87e-17 82.0
MS.gene38063.t1 AT2G25000 52.308 65 30 1 243 306 99 163 2.07e-17 81.3
MS.gene38063.t1 AT2G25000 52.308 65 30 1 243 306 99 163 2.07e-17 81.3
MS.gene38063.t1 AT2G25000 52.308 65 30 1 243 306 121 185 3.94e-17 80.9
MS.gene38063.t1 AT2G25000 52.308 65 30 1 243 306 142 206 4.62e-17 80.9
MS.gene38063.t1 AT2G21900 48.485 66 34 0 242 307 104 169 4.62e-17 79.3
MS.gene38063.t1 AT2G21900 41.250 80 46 1 72 150 89 168 6.87e-13 67.4
MS.gene38063.t1 AT1G69810 50.649 77 36 2 232 306 130 206 8.38e-17 81.3
MS.gene38063.t1 AT1G69810 50.649 77 36 2 232 306 188 264 1.01e-16 81.6
MS.gene38063.t1 AT2G23320 56.140 57 24 1 248 303 241 297 1.14e-16 80.5
MS.gene38063.t1 AT5G28650 57.895 57 23 1 248 303 263 319 2.48e-16 79.7
MS.gene38063.t1 AT1G80840 43.590 78 41 2 233 307 130 207 2.75e-16 79.3
MS.gene38063.t1 AT2G46130 51.429 70 30 1 234 303 17 82 2.76e-16 74.3
MS.gene38063.t1 AT3G01080 51.562 64 31 0 88 151 201 264 3.02e-16 79.3
MS.gene38063.t1 AT3G01080 56.250 64 27 1 246 309 204 266 5.67e-15 75.5
MS.gene38063.t1 AT2G24570 56.140 57 24 1 248 303 244 300 6.47e-16 78.6
MS.gene38063.t1 AT3G04670 57.895 57 23 1 248 303 263 319 8.05e-16 78.2
MS.gene38063.t1 AT4G24240 47.222 72 37 1 234 304 268 339 1.08e-15 78.2
MS.gene38063.t1 AT4G31550 54.386 57 25 1 248 303 247 303 5.21e-15 75.9
MS.gene38063.t1 AT4G31550 54.386 57 25 1 248 303 246 302 5.31e-15 75.9
MS.gene38063.t1 AT5G52830 46.914 81 41 2 230 309 149 228 6.23e-15 75.9
MS.gene38063.t1 AT5G52830 45.588 68 35 2 85 150 158 225 9.71e-12 66.2
MS.gene38063.t1 AT2G30590 54.386 57 25 1 248 303 314 370 1.86e-14 74.7
MS.gene38063.t1 AT1G69310 52.857 70 29 1 234 303 134 199 1.96e-14 73.6
MS.gene38063.t1 AT4G23550 44.000 75 41 1 236 309 129 203 4.36e-14 72.8
MS.gene38063.t1 AT1G29280 50.820 61 29 1 247 306 74 134 5.39e-14 72.0
MS.gene38063.t1 AT3G58710 40.566 106 56 2 203 307 32 131 5.33e-13 68.9
MS.gene38063.t1 AT3G58710 48.387 62 31 1 247 307 71 132 1.66e-12 67.8
MS.gene38063.t1 AT5G01900 38.889 90 51 2 90 175 108 197 1.86e-12 67.4
MS.gene38063.t1 AT4G01250 46.875 64 33 1 247 309 128 191 6.64e-12 66.2
MS.gene38063.t1 AT2G34830 47.619 63 32 1 248 309 225 287 6.83e-12 67.0
MS.gene38063.t1 AT2G34830 47.619 63 32 1 248 309 216 278 6.97e-12 67.0
MS.gene38063.t1 AT1G30650 47.619 63 32 1 248 309 218 280 1.26e-11 66.2
MS.gene38063.t1 AT1G30650 50.769 65 30 2 88 150 213 277 4.51e-11 64.7
MS.gene38063.t1 AT5G45260 48.387 62 28 2 93 150 1209 1270 1.37e-11 67.0
MS.gene38063.t1 AT2G46400 42.254 71 38 1 234 301 91 161 4.81e-11 63.5

Find 76 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGTACGGTGTTTGATTC+AGG 0.253166 5.1:+77829655 None:intergenic
TTAAGGGGAGTGAATTTAAA+AGG 0.256917 5.1:-77829789 MS.gene38063:CDS
CACTTGCTGCTGTACTTTAT+CGG 0.275757 5.1:+77830062 None:intergenic
TACGGTCAGAAAATGGTTAA+AGG 0.320262 5.1:-77829167 MS.gene38063:CDS
ACGGTGTTTGATTCAGGTTT+GGG 0.332610 5.1:+77829661 None:intergenic
TACGGTGTTTGATTCAGGTT+TGG 0.335607 5.1:+77829660 None:intergenic
AAAACATTGCAATTCAGCTT+TGG 0.349332 5.1:+77828634 None:intergenic
GGCTATAAATGGCGAAAGTA+TGG 0.352648 5.1:-77829823 MS.gene38063:CDS
AAACATTGCAATTCAGCTTT+GGG 0.362250 5.1:+77828635 None:intergenic
TCACAAAAGATGGCTATAAA+TGG 0.370905 5.1:-77829834 MS.gene38063:CDS
GCGCAAATACGGTCAGAAAA+TGG 0.379435 5.1:-77829174 MS.gene38063:CDS
ATCGCTGATAGAATCTTCTT+TGG 0.384153 5.1:+77828743 None:intergenic
CAATTCATGCGAAGGAGTCT+TGG 0.392943 5.1:+77829906 None:intergenic
AATTCATGCGAAGGAGTCTT+GGG 0.399844 5.1:+77829907 None:intergenic
ATAGAATCTTCTTTGGTACT+AGG 0.419154 5.1:+77828750 None:intergenic
GGAAGGATGGTCGCTCGAAT+TGG 0.420254 5.1:+77828825 None:intergenic
AACTGTCATAACTACCTATG+AGG 0.422219 5.1:-77828913 MS.gene38063:CDS
ACCTTCCACATCAGCAAAAG+AGG 0.424951 5.1:+77829588 None:intergenic
GGGGCTCTGTGAATGTTGCT+CGG 0.428148 5.1:+77829927 None:intergenic
GTTCTTCCTGTTGTCGAAAA+GGG 0.433436 5.1:-77829622 MS.gene38063:CDS
TGTTCTTCCTGTTGTCGAAA+AGG 0.433937 5.1:-77829623 MS.gene38063:CDS
CAAACTTGAATCACGTATCA+TGG 0.436403 5.1:+77828719 None:intergenic
ATAACGCGAGATTCACCATT+TGG 0.443781 5.1:+77829245 None:intergenic
TACTATCGATGCTCGAGTCC+CGG 0.444280 5.1:-77828981 MS.gene38063:CDS
CGTGAAAAGGTCACAAAAGA+TGG 0.457293 5.1:-77829844 MS.gene38063:CDS
ACCCTCCATAATACGTGAAA+AGG 0.461224 5.1:-77829857 MS.gene38063:CDS
GTTCGAACTACAAGTGAGTC+TGG 0.468907 5.1:-77829221 MS.gene38063:CDS
GAATTGCCTCTGATGCAATC+TGG 0.477337 5.1:-77829889 MS.gene38063:CDS
GGGTATCGCTGGCGCAAATA+CGG 0.478104 5.1:-77829185 MS.gene38063:CDS
GGGCTCTGTGAATGTTGCTC+GGG 0.482480 5.1:+77829928 None:intergenic
TGATGCTATGGCTTGTGACT+TGG 0.484944 5.1:-77829971 MS.gene38063:CDS
CTCTGTGAATGTTGCTCGGG+CGG 0.495254 5.1:+77829931 None:intergenic
ATGATCATGTTGACCCTCAT+AGG 0.497230 5.1:+77828899 None:intergenic
AAGACCCTGGTTAGGAAGGA+TGG 0.500400 5.1:+77828812 None:intergenic
CATGTACCTCCCGCTGGAAG+AGG 0.501900 5.1:-77828879 MS.gene38063:CDS
TCTTGACCAGATTGCATCAG+AGG 0.508109 5.1:+77829883 None:intergenic
AATAGTAACAACGATGCGAC+TGG 0.513117 5.1:-77829278 MS.gene38063:CDS
ACAGGAAGAACACAATCAAC+CGG 0.519640 5.1:+77829634 None:intergenic
GTATGAAGCTGTGCCTCGAC+AGG 0.524519 5.1:-77829461 MS.gene38063:CDS
TTTGCTGATGTGGAAGGTCA+AGG 0.525864 5.1:-77829583 MS.gene38063:intron
AGCGACCATCCTTCCTAACC+AGG 0.527054 5.1:-77828817 MS.gene38063:CDS
AACACAATCAACCGGTGGTA+CGG 0.528993 5.1:+77829642 None:intergenic
CCACATCAGCAAAAGAGGAT+TGG 0.536681 5.1:+77829593 None:intergenic
TTGTAAATGATGGGTATCGC+TGG 0.545679 5.1:-77829196 MS.gene38063:CDS
ATTGCAATTCAGCTTTGGGC+GGG 0.555048 5.1:+77828639 None:intergenic
CGCAAAGGTGTGACCTGTCG+AGG 0.560873 5.1:+77829448 None:intergenic
AGGGAGATTGCATTGTCACA+AGG 0.566691 5.1:-77830030 MS.gene38063:CDS
TCTGCAACAGATGTTGTACT+AGG 0.567336 5.1:+77828663 None:intergenic
GAGTCTGGAATTGTAAATGA+TGG 0.567590 5.1:-77829206 MS.gene38063:CDS
TCAGGGACACCTCTTCCAGC+GGG 0.571731 5.1:+77828870 None:intergenic
TGAATCAAACACCGTACCAC+CGG 0.573093 5.1:-77829653 MS.gene38063:CDS
CATGATCATGTACCTCCCGC+TGG 0.575201 5.1:-77828885 MS.gene38063:CDS
TCATGTTCACTTAATCTGCA+TGG 0.576789 5.1:+77828690 None:intergenic
CATTGCAATTCAGCTTTGGG+CGG 0.578039 5.1:+77828638 None:intergenic
TCTTAAAAGTGAAATAAATG+AGG 0.591759 5.1:-77828793 MS.gene38063:CDS
CGGTGTTTGATTCAGGTTTG+GGG 0.596338 5.1:+77829662 None:intergenic
ATCAGAGGCAATTCATGCGA+AGG 0.602766 5.1:+77829898 None:intergenic
ACTGTCATAACTACCTATGA+GGG 0.609013 5.1:-77828912 MS.gene38063:CDS
AGTGTCGGATTCTGATGCTA+TGG 0.614930 5.1:-77829983 MS.gene38063:CDS
GGGAGATTGCATTGTCACAA+GGG 0.616469 5.1:-77830029 MS.gene38063:CDS
ACTGGAGCTGATGTGCCAAA+TGG 0.618677 5.1:-77829260 MS.gene38063:CDS
TTCAGGGACACCTCTTCCAG+CGG 0.624834 5.1:+77828869 None:intergenic
TACGAAGATTGCAGTTACAT+CGG 0.625017 5.1:-77829697 MS.gene38063:CDS
GAAGGTGGATGGAAACGCAA+AGG 0.633047 5.1:+77829433 None:intergenic
AGTCTGGAATTGTAAATGAT+GGG 0.636147 5.1:-77829205 MS.gene38063:CDS
GCAGCAAGTGAGTCCACAGA+GGG 0.639573 5.1:-77830049 MS.gene38063:CDS
CGCGAACTGACGAGTCAAAG+CGG 0.647499 5.1:-77829402 MS.gene38063:CDS
GACAATGCAATCTCCCTCTG+TGG 0.657768 5.1:+77830036 None:intergenic
TTAAAGGCAACACAAATCCA+AGG 0.658587 5.1:-77829151 MS.gene38063:intron
GGGACACCTCTTCCAGCGGG+AGG 0.678592 5.1:+77828873 None:intergenic
AGCAGCAAGTGAGTCCACAG+AGG 0.681184 5.1:-77830050 MS.gene38063:CDS
ATTCATGCGAAGGAGTCTTG+GGG 0.682503 5.1:+77829908 None:intergenic
GCGACCATCCTTCCTAACCA+GGG 0.690672 5.1:-77828816 MS.gene38063:CDS
TCAGCAAAAGAGGATTGGTG+TGG 0.698509 5.1:+77829598 None:intergenic
GGAAGAACACAATCAACCGG+TGG 0.713267 5.1:+77829637 None:intergenic
CAATTTCAGATATCACACGA+TGG 0.729225 5.1:-77829724 MS.gene38063:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTAATATATTTTACTGTA+TGG - chr5.1:77829240-77829259 MS.gene38063:CDS 15.0%
!! ATAAAATAATGCATCTTGAA+AGG + chr5.1:77829668-77829687 None:intergenic 20.0%
!! TCTTAAAAGTGAAATAAATG+AGG - chr5.1:77829956-77829975 MS.gene38063:CDS 20.0%
!! TTTACAATATGATATCAAAC+AGG - chr5.1:77829439-77829458 MS.gene38063:CDS 20.0%
!!! ATTAAGAGTTTTTTCATGTA+AGG + chr5.1:77829227-77829246 None:intergenic 20.0%
!! AATTTTGTAGGTGTATTTTC+AGG + chr5.1:77829900-77829919 None:intergenic 25.0%
!! ATTTTGTAGGTGTATTTTCA+GGG + chr5.1:77829899-77829918 None:intergenic 25.0%
!! GCTTTTATTATGAATTGGTA+TGG - chr5.1:77829630-77829649 MS.gene38063:CDS 25.0%
!!! CACTAGCTTTTATTATGAAT+TGG - chr5.1:77829625-77829644 MS.gene38063:CDS 25.0%
ATAGAATCTTCTTTGGTACT+AGG + chr5.1:77830002-77830021 None:intergenic 30.0%
TCACAAAAGATGGCTATAAA+TGG - chr5.1:77828915-77828934 MS.gene38063:CDS 30.0%
TGTAGCTAAAAATGAAGTGT+CGG - chr5.1:77828751-77828770 MS.gene38063:CDS 30.0%
TTAAGGGGAGTGAATTTAAA+AGG - chr5.1:77828960-77828979 MS.gene38063:CDS 30.0%
! ACTCCAACAATTCTAGAAAA+TGG + chr5.1:77829388-77829407 None:intergenic 30.0%
! AGTCTGGAATTGTAAATGAT+GGG - chr5.1:77829544-77829563 MS.gene38063:intron 30.0%
! GATAGTAATTTCTGGAAGAT+TGG + chr5.1:77829755-77829774 None:intergenic 30.0%
!! ATCTGAAATTGTTTTCTTGC+AGG + chr5.1:77829016-77829035 None:intergenic 30.0%
!! TCTGAAATTGTTTTCTTGCA+GGG + chr5.1:77829015-77829034 None:intergenic 30.0%
!!! TGACCATTTTCTAGAATTGT+TGG - chr5.1:77829382-77829401 MS.gene38063:intron 30.0%
!!! TTATTTCACTTTTAAGACCC+TGG + chr5.1:77829953-77829972 None:intergenic 30.0%
AACTGTCATAACTACCTATG+AGG - chr5.1:77829836-77829855 MS.gene38063:CDS 35.0%
ACTGTCATAACTACCTATGA+GGG - chr5.1:77829837-77829856 MS.gene38063:CDS 35.0%
ATAAAAGCTAGTGTGTACCT+TGG + chr5.1:77829618-77829637 None:intergenic 35.0%
ATCGCTGATAGAATCTTCTT+TGG + chr5.1:77830009-77830028 None:intergenic 35.0%
CAAACTTGAATCACGTATCA+TGG + chr5.1:77830033-77830052 None:intergenic 35.0%
CAATTTCAGATATCACACGA+TGG - chr5.1:77829025-77829044 MS.gene38063:intron 35.0%
TACGAAGATTGCAGTTACAT+CGG - chr5.1:77829052-77829071 MS.gene38063:intron 35.0%
TACGGTCAGAAAATGGTTAA+AGG - chr5.1:77829582-77829601 MS.gene38063:intron 35.0%
TATGGCCAGAAAAACGTTAA+GGG - chr5.1:77828944-77828963 MS.gene38063:CDS 35.0%
TCATGTTCACTTAATCTGCA+TGG + chr5.1:77830062-77830081 None:intergenic 35.0%
TTAAAGGCAACACAAATCCA+AGG - chr5.1:77829598-77829617 MS.gene38063:CDS 35.0%
! ACCTTTTCACGTATTATGGA+GGG + chr5.1:77828896-77828915 None:intergenic 35.0%
! CGAATTGGAGTCAATTTTGT+AGG + chr5.1:77829912-77829931 None:intergenic 35.0%
! GAGTCTGGAATTGTAAATGA+TGG - chr5.1:77829543-77829562 MS.gene38063:intron 35.0%
! TCAGTTCGCGAAATTTTTGA+AGG + chr5.1:77829337-77829356 None:intergenic 35.0%
! TGTGACCTTTTCACGTATTA+TGG + chr5.1:77828900-77828919 None:intergenic 35.0%
!! CTTCTCAACATGCTTTTTGA+CGG + chr5.1:77829799-77829818 None:intergenic 35.0%
!! TTCTCAACATGCTTTTTGAC+GGG + chr5.1:77829798-77829817 None:intergenic 35.0%
AATAGTAACAACGATGCGAC+TGG - chr5.1:77829471-77829490 MS.gene38063:CDS 40.0%
AATTCATGCGAAGGAGTCTT+GGG + chr5.1:77828845-77828864 None:intergenic 40.0%
ACAGGAAGAACACAATCAAC+CGG + chr5.1:77829118-77829137 None:intergenic 40.0%
ACCCTCCATAATACGTGAAA+AGG - chr5.1:77828892-77828911 MS.gene38063:CDS 40.0%
ATAACGCGAGATTCACCATT+TGG + chr5.1:77829507-77829526 None:intergenic 40.0%
ATGATCATGTTGACCCTCAT+AGG + chr5.1:77829853-77829872 None:intergenic 40.0%
ATGGCCAGAAAAACGTTAAG+GGG - chr5.1:77828945-77828964 MS.gene38063:CDS 40.0%
CGTGAAAAGGTCACAAAAGA+TGG - chr5.1:77828905-77828924 MS.gene38063:CDS 40.0%
GGCTATAAATGGCGAAAGTA+TGG - chr5.1:77828926-77828945 MS.gene38063:CDS 40.0%
GTATGGCCAGAAAAACGTTA+AGG - chr5.1:77828943-77828962 MS.gene38063:CDS 40.0%
GTTCTTCCTGTTGTCGAAAA+GGG - chr5.1:77829127-77829146 MS.gene38063:intron 40.0%
TCTGCAACAGATGTTGTACT+AGG + chr5.1:77830089-77830108 None:intergenic 40.0%
TGAATTGGTATGGTACATCG+TGG - chr5.1:77829640-77829659 MS.gene38063:CDS 40.0%
TGTTCTTCCTGTTGTCGAAA+AGG - chr5.1:77829126-77829145 MS.gene38063:intron 40.0%
! ACGGTGTTTGATTCAGGTTT+GGG + chr5.1:77829091-77829110 None:intergenic 40.0%
! CACTTGCTGCTGTACTTTAT+CGG + chr5.1:77828690-77828709 None:intergenic 40.0%
! GACCTTTTCACGTATTATGG+AGG + chr5.1:77828897-77828916 None:intergenic 40.0%
! TACGGTGTTTGATTCAGGTT+TGG + chr5.1:77829092-77829111 None:intergenic 40.0%
!! CGAGCATCGATAGTAATTTC+TGG + chr5.1:77829763-77829782 None:intergenic 40.0%
!! GACAGTTGTTGTGTTTTGAG+AGG + chr5.1:77829823-77829842 None:intergenic 40.0%
!! GCGAAATTTTTGAAGGTGGA+TGG + chr5.1:77829330-77829349 None:intergenic 40.0%
!! GTTCGCGAAATTTTTGAAGG+TGG + chr5.1:77829334-77829353 None:intergenic 40.0%
!! TCTCAACATGCTTTTTGACG+GGG + chr5.1:77829797-77829816 None:intergenic 40.0%
!! TTGTAAATGATGGGTATCGC+TGG - chr5.1:77829553-77829572 MS.gene38063:intron 40.0%
!!! TCACTTTTAAGACCCTGGTT+AGG + chr5.1:77829948-77829967 None:intergenic 40.0%
!!! TTTTAAGACCCTGGTTAGGA+AGG + chr5.1:77829944-77829963 None:intergenic 40.0%
AACACAATCAACCGGTGGTA+CGG + chr5.1:77829110-77829129 None:intergenic 45.0%
ACCTTCCACATCAGCAAAAG+AGG + chr5.1:77829164-77829183 None:intergenic 45.0%
AGGGAGATTGCATTGTCACA+AGG - chr5.1:77828719-77828738 MS.gene38063:CDS 45.0%
ATCAGAGGCAATTCATGCGA+AGG + chr5.1:77828854-77828873 None:intergenic 45.0%
ATTCATGCGAAGGAGTCTTG+GGG + chr5.1:77828844-77828863 None:intergenic 45.0%
CAATTCATGCGAAGGAGTCT+TGG + chr5.1:77828846-77828865 None:intergenic 45.0%
CCACATCAGCAAAAGAGGAT+TGG + chr5.1:77829159-77829178 None:intergenic 45.0%
GAATTGCCTCTGATGCAATC+TGG - chr5.1:77828860-77828879 MS.gene38063:CDS 45.0%
GCGCAAATACGGTCAGAAAA+TGG - chr5.1:77829575-77829594 MS.gene38063:intron 45.0%
GGGAGATTGCATTGTCACAA+GGG - chr5.1:77828720-77828739 MS.gene38063:CDS 45.0%
GTTCGAACTACAAGTGAGTC+TGG - chr5.1:77829528-77829547 MS.gene38063:intron 45.0%
TCTTGACCAGATTGCATCAG+AGG + chr5.1:77828869-77828888 None:intergenic 45.0%
TGAATCAAACACCGTACCAC+CGG - chr5.1:77829096-77829115 MS.gene38063:intron 45.0%
TTTGCTGATGTGGAAGGTCA+AGG - chr5.1:77829166-77829185 MS.gene38063:CDS 45.0%
! AGTGTCGGATTCTGATGCTA+TGG - chr5.1:77828766-77828785 MS.gene38063:CDS 45.0%
! CACTCCCCTTAACGTTTTTC+TGG + chr5.1:77828952-77828971 None:intergenic 45.0%
! CCAATCCTCTTTTGCTGATG+TGG - chr5.1:77829156-77829175 MS.gene38063:CDS 45.0%
! CGGTGTTTGATTCAGGTTTG+GGG + chr5.1:77829090-77829109 None:intergenic 45.0%
! TCAGCAAAAGAGGATTGGTG+TGG + chr5.1:77829154-77829173 None:intergenic 45.0%
! TCCTCTTTTGCTGATGTGGA+AGG - chr5.1:77829160-77829179 MS.gene38063:CDS 45.0%
! TGATGCTATGGCTTGTGACT+TGG - chr5.1:77828778-77828797 MS.gene38063:CDS 45.0%
AAGACCCTGGTTAGGAAGGA+TGG + chr5.1:77829940-77829959 None:intergenic 50.0%
ACTGGAGCTGATGTGCCAAA+TGG - chr5.1:77829489-77829508 MS.gene38063:intron 50.0%
GAAGGTGGATGGAAACGCAA+AGG + chr5.1:77829319-77829338 None:intergenic 50.0%
GACAATGCAATCTCCCTCTG+TGG + chr5.1:77828716-77828735 None:intergenic 50.0%
GGAAGAACACAATCAACCGG+TGG + chr5.1:77829115-77829134 None:intergenic 50.0%
GGTGGTACGGTGTTTGATTC+AGG + chr5.1:77829097-77829116 None:intergenic 50.0%
TACTATCGATGCTCGAGTCC+CGG - chr5.1:77829768-77829787 MS.gene38063:CDS 50.0%
! TGTGGTCCCTTTTCGACAAC+AGG + chr5.1:77829136-77829155 None:intergenic 50.0%
!! ATGCTTTTTGACGGGGCATC+CGG + chr5.1:77829790-77829809 None:intergenic 50.0%
AGCAGCAAGTGAGTCCACAG+AGG - chr5.1:77828699-77828718 MS.gene38063:CDS 55.0%
AGCGACCATCCTTCCTAACC+AGG - chr5.1:77829932-77829951 MS.gene38063:CDS 55.0%
CATGATCATGTACCTCCCGC+TGG - chr5.1:77829864-77829883 MS.gene38063:CDS 55.0%
CGCGAACTGACGAGTCAAAG+CGG - chr5.1:77829347-77829366 MS.gene38063:intron 55.0%
CTCTGTGAATGTTGCTCGGG+CGG + chr5.1:77828821-77828840 None:intergenic 55.0%
GCAGCAAGTGAGTCCACAGA+GGG - chr5.1:77828700-77828719 MS.gene38063:CDS 55.0%
GCGACCATCCTTCCTAACCA+GGG - chr5.1:77829933-77829952 MS.gene38063:CDS 55.0%
GGAAGGATGGTCGCTCGAAT+TGG + chr5.1:77829927-77829946 None:intergenic 55.0%
GGGCTCTGTGAATGTTGCTC+GGG + chr5.1:77828824-77828843 None:intergenic 55.0%
GGGGCTCTGTGAATGTTGCT+CGG + chr5.1:77828825-77828844 None:intergenic 55.0%
GTATGAAGCTGTGCCTCGAC+AGG - chr5.1:77829288-77829307 MS.gene38063:CDS 55.0%
TTCAGGGACACCTCTTCCAG+CGG + chr5.1:77829883-77829902 None:intergenic 55.0%
! GGGTATCGCTGGCGCAAATA+CGG - chr5.1:77829564-77829583 MS.gene38063:intron 55.0%
!! TGCTTTTTGACGGGGCATCC+GGG + chr5.1:77829789-77829808 None:intergenic 55.0%
CATGTACCTCCCGCTGGAAG+AGG - chr5.1:77829870-77829889 MS.gene38063:CDS 60.0%
TCAGGGACACCTCTTCCAGC+GGG + chr5.1:77829882-77829901 None:intergenic 60.0%
! CGCAAAGGTGTGACCTGTCG+AGG + chr5.1:77829304-77829323 None:intergenic 60.0%
GGGACACCTCTTCCAGCGGG+AGG + chr5.1:77829879-77829898 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 77828647 77830124 77828647 ID=MS.gene38063
chr5.1 mRNA 77828647 77830124 77828647 ID=MS.gene38063.t1;Parent=MS.gene38063
chr5.1 exon 77829584 77830124 77829584 ID=MS.gene38063.t1.exon1;Parent=MS.gene38063.t1
chr5.1 CDS 77829584 77830124 77829584 ID=cds.MS.gene38063.t1;Parent=MS.gene38063.t1
chr5.1 exon 77829400 77829499 77829400 ID=MS.gene38063.t1.exon2;Parent=MS.gene38063.t1
chr5.1 CDS 77829400 77829499 77829400 ID=cds.MS.gene38063.t1;Parent=MS.gene38063.t1
chr5.1 exon 77829152 77829310 77829152 ID=MS.gene38063.t1.exon3;Parent=MS.gene38063.t1
chr5.1 CDS 77829152 77829310 77829152 ID=cds.MS.gene38063.t1;Parent=MS.gene38063.t1
chr5.1 exon 77828647 77829007 77828647 ID=MS.gene38063.t1.exon4;Parent=MS.gene38063.t1
chr5.1 CDS 77828647 77829007 77828647 ID=cds.MS.gene38063.t1;Parent=MS.gene38063.t1
Gene Sequence

>MS.gene38063

ATGGTTTTGTCACAAGAAAGTGCTGATCACAACGTTTCTTCCGATAAAGTACAGCAGCAAGTGAGTCCACAGAGGGAGATTGCATTGTCACAAGGGATTGATGATGTAGCTAAAAATGAAGTGTCGGATTCTGATGCTATGGCTTGTGACTTGGTATCGTCACACTCTTCACCGCCCGAGCAACATTCACAGAGCCCCAAGACTCCTTCGCATGAATTGCCTCTGATGCAATCTGGTCAAGACAAACCCTCCATAATACGTGAAAAGGTCACAAAAGATGGCTATAAATGGCGAAAGTATGGCCAGAAAAACGTTAAGGGGAGTGAATTTAAAAGGAGTTATTACAAATGTACTTATTCAGACTGCCCTGCAAGAAAACAATTTCAGATATCACACGATGGAAACTACGAAGATTGCAGTTACATCGGTCAGCATAATCACCCCAAACCTGAATCAAACACCGTACCACCGGTTGATTGTGTTCTTCCTGTTGTCGAAAAGGGACCACACCAATCCTCTTTTGCTGATGTGGAAGGTCAAGGTGAGAAGTAAACTTTGTTAGTATTTTTGTTTTCGTCCTTACATGAAAAAACTCTTAATATATTTTACTGTATGGTGCATGCAGAAAATTCATCTGTTGAGTATGAAGCTGTGCCTCGACAGGTCACACCTTTGCGTTTCCATCCACCTTCAAAAATTTCGCGAACTGACGAGTCAAAGCGGCTGTACGTTATTTGACCATTTTCTAGAATTGTTGGAGTTGATATATGCGATATCTAACATTTAATTTACTTTACAATATGATATCAAACAGGAAGAAAGACAATAGTAACAACGATGCGACTGGAGCTGATGTGCCAAATGGTGAATCTCGCGTTATTGTTCGAACTACAAGTGAGTCTGGAATTGTAAATGATGGGTATCGCTGGCGCAAATACGGTCAGAAAATGGTTAAAGGCAACACAAATCCAAGGTACACACTAGCTTTTATTATGAATTGGTATGGTACATCGTGGATCCTTTCAAGATGCATTATTTTATCTCTCTTTCTCTATGTGCTCGCAAATTCATGAAACGATTTAATCTAATTGATTGCACGTTCTCTCCAATCTTCCAGAAATTACTATCGATGCTCGAGTCCCGGATGCCCCGTCAAAAAGCATGTTGAGAAGTCCTCTCAAAACACAACAACTGTCATAACTACCTATGAGGGTCAACATGATCATGTACCTCCCGCTGGAAGAGGTGTCCCTGAAAATACACCTACAAAATTGACTCCAATTCGAGCGACCATCCTTCCTAACCAGGGTCTTAAAAGTGAAATAAATGAGGAAGAGCAACAAAATGAAGATCCTAGTACCAAAGAAGATTCTATCAGCGATGCCATGATACGTGATTCAAGTTTGAAAGTTCCATGCAGATTAAGTGAACATGATACTCCTAGTACAACATCTGTTGCAGAACCCGCCCAAAGCTGA
Protein sequence

>MS.gene38063.t1

MVLSQESADHNVSSDKVQQQVSPQREIALSQGIDDVAKNEVSDSDAMACDLVSSHSSPPEQHSQSPKTPSHELPLMQSGQDKPSIIREKVTKDGYKWRKYGQKNVKGSEFKRSYYKCTYSDCPARKQFQISHDGNYEDCSYIGQHNHPKPESNTVPPVDCVLPVVEKGPHQSSFADVEGQENSSVEYEAVPRQVTPLRFHPPSKISRTDESKRLKKDNSNNDATGADVPNGESRVIVRTTSESGIVNDGYRWRKYGQKMVKGNTNPRNYYRCSSPGCPVKKHVEKSSQNTTTVITTYEGQHDHVPPAGRGVPENTPTKLTPIRATILPNQGLKSEINEEEQQNEDPSTKEDSISDAMIRDSSLKVPCRLSEHDTPSTTSVAEPAQS