AlfalfaGEDB | MS.gene38063

M. sativa cultivar XinJiangDaYe / MS.gene38063

KEGG: K18834
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38063.t1	XP_003617967.1	89.3	391	37	1	1	386	1	391	1.90E-192	681.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38063.t1	Q9SI37	38.1	349	157	8	56	360	75	408	1.2e-49	198.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38063.t1	G7KEQ1	89.3	391	37	1	1	386	1	391	1.3e-192	681.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene38063.t1	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38063.t1	MTR_5g097490	92.839	391	23	1	1	386	1	391	0.0	724
MS.gene38063.t1	MTR_5g097500	53.628	317	130	4	1	317	1	300	9.02e-109	322
MS.gene38063.t1	MTR_7g071120	45.923	233	116	5	85	310	158	387	6.05e-56	191
MS.gene38063.t1	MTR_3g056100	43.777	233	121	3	84	309	91	320	6.38e-56	190
MS.gene38063.t1	MTR_3g056100	44.318	88	48	1	219	306	71	157	2.08e-14	74.7
MS.gene38063.t1	MTR_5g094430	42.570	249	128	4	91	327	65	310	4.43e-55	187
MS.gene38063.t1	MTR_3g056100	43.777	233	121	3	84	309	235	464	4.57e-55	191
MS.gene38063.t1	MTR_3g056100	44.318	88	48	1	219	306	215	301	2.16e-14	75.1
MS.gene38063.t1	MTR_3g056100	42.510	247	117	5	84	309	91	333	6.43e-55	187
MS.gene38063.t1	MTR_3g056100	44.318	88	48	1	219	306	71	157	2.03e-14	74.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38063.t1	AT2G04880	44.737	266	111	7	76	314	94	350	1.86e-65	215
MS.gene38063.t1	AT2G04880	43.772	281	116	7	76	314	94	374	2.00e-64	213
MS.gene38063.t1	AT4G26640	43.548	248	109	6	83	309	30	267	8.06e-53	180
MS.gene38063.t1	AT4G26640	43.548	248	109	6	83	309	30	267	8.06e-53	180
MS.gene38063.t1	AT4G26640	43.548	248	109	6	83	309	30	267	8.06e-53	180
MS.gene38063.t1	AT4G26640	43.548	248	109	6	83	309	30	267	8.06e-53	180
MS.gene38063.t1	AT4G26640	43.548	248	109	6	83	309	134	371	6.78e-52	180
MS.gene38063.t1	AT4G26640	42.917	240	110	4	83	303	166	397	1.24e-51	180
MS.gene38063.t1	AT4G26640	43.548	248	109	6	83	309	206	443	1.85e-51	181
MS.gene38063.t1	AT2G38470	42.339	248	108	5	92	310	184	425	6.28e-51	178

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Find 76 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTGCAATTCAGCTT+TGG	0.349332	5.1:+77828634	None:intergenic
AAACATTGCAATTCAGCTTT+GGG	0.362250	5.1:+77828635	None:intergenic
AACACAATCAACCGGTGGTA+CGG	0.528993	5.1:+77829642	None:intergenic
AACTGTCATAACTACCTATG+AGG	0.422219	5.1:-77828913	MS.gene38063:CDS
AAGACCCTGGTTAGGAAGGA+TGG	0.500400	5.1:+77828812	None:intergenic
AATAGTAACAACGATGCGAC+TGG	0.513117	5.1:-77829278	MS.gene38063:CDS
AATTCATGCGAAGGAGTCTT+GGG	0.399844	5.1:+77829907	None:intergenic
ACAGGAAGAACACAATCAAC+CGG	0.519640	5.1:+77829634	None:intergenic
ACCCTCCATAATACGTGAAA+AGG	0.461224	5.1:-77829857	MS.gene38063:CDS
ACCTTCCACATCAGCAAAAG+AGG	0.424951	5.1:+77829588	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAGAATCTTCTTTGGTACT+AGG	+	chr5.1:77830002-77830021	None:intergenic	30.0%
TCACAAAAGATGGCTATAAA+TGG	-	chr5.1:77828915-77828934	MS.gene38063:CDS	30.0%
TGTAGCTAAAAATGAAGTGT+CGG	-	chr5.1:77828751-77828770	MS.gene38063:CDS	30.0%
TTAAGGGGAGTGAATTTAAA+AGG	-	chr5.1:77828960-77828979	MS.gene38063:CDS	30.0%
AACTGTCATAACTACCTATG+AGG	-	chr5.1:77829836-77829855	MS.gene38063:CDS	35.0%
ACTGTCATAACTACCTATGA+GGG	-	chr5.1:77829837-77829856	MS.gene38063:CDS	35.0%
ATAAAAGCTAGTGTGTACCT+TGG	+	chr5.1:77829618-77829637	None:intergenic	35.0%
ATCGCTGATAGAATCTTCTT+TGG	+	chr5.1:77830009-77830028	None:intergenic	35.0%
CAAACTTGAATCACGTATCA+TGG	+	chr5.1:77830033-77830052	None:intergenic	35.0%
CAATTTCAGATATCACACGA+TGG	-	chr5.1:77829025-77829044	MS.gene38063:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	77828647	77830124	77828647	ID=MS.gene38063
chr5.1	mRNA	77828647	77830124	77828647	ID=MS.gene38063.t1;Parent=MS.gene38063
chr5.1	exon	77829584	77830124	77829584	ID=MS.gene38063.t1.exon1;Parent=MS.gene38063.t1
chr5.1	CDS	77829584	77830124	77829584	ID=cds.MS.gene38063.t1;Parent=MS.gene38063.t1
chr5.1	exon	77829400	77829499	77829400	ID=MS.gene38063.t1.exon2;Parent=MS.gene38063.t1
chr5.1	CDS	77829400	77829499	77829400	ID=cds.MS.gene38063.t1;Parent=MS.gene38063.t1
chr5.1	exon	77829152	77829310	77829152	ID=MS.gene38063.t1.exon3;Parent=MS.gene38063.t1
chr5.1	CDS	77829152	77829310	77829152	ID=cds.MS.gene38063.t1;Parent=MS.gene38063.t1
chr5.1	exon	77828647	77829007	77828647	ID=MS.gene38063.t1.exon4;Parent=MS.gene38063.t1
chr5.1	CDS	77828647	77829007	77828647	ID=cds.MS.gene38063.t1;Parent=MS.gene38063.t1

Gene Sequence

>MS.gene38063

ATGGTTTTGTCACAAGAAAGTGCTGATCACAACGTTTCTTCCGATAAAGTACAGCAGCAAGTGAGTCCACAGAGGGAGATTGCATTGTCACAAGGGATTGATGATGTAGCTAAAAATGAAGTGTCGGATTCTGATGCTATGGCTTGTGACTTGGTATCGTCACACTCTTCACCGCCCGAGCAACATTCACAGAGCCCCAAGACTCCTTCGCATGAATTGCCTCTGATGCAATCTGGTCAAGACAAACCCTCCATAATACGTGAAAAGGTCACAAAAGATGGCTATAAATGGCGAAAGTATGGCCAGAAAAACGTTAAGGGGAGTGAATTTAAAAGGAGTTATTACAAATGTACTTATTCAGACTGCCCTGCAAGAAAACAATTTCAGATATCACACGATGGAAACTACGAAGATTGCAGTTACATCGGTCAGCATAATCACCCCAAACCTGAATCAAACACCGTACCACCGGTTGATTGTGTTCTTCCTGTTGTCGAAAAGGGACCACACCAATCCTCTTTTGCTGATGTGGAAGGTCAAGGTGAGAAGTAAACTTTGTTAGTATTTTTGTTTTCGTCCTTACATGAAAAAACTCTTAATATATTTTACTGTATGGTGCATGCAGAAAATTCATCTGTTGAGTATGAAGCTGTGCCTCGACAGGTCACACCTTTGCGTTTCCATCCACCTTCAAAAATTTCGCGAACTGACGAGTCAAAGCGGCTGTACGTTATTTGACCATTTTCTAGAATTGTTGGAGTTGATATATGCGATATCTAACATTTAATTTACTTTACAATATGATATCAAACAGGAAGAAAGACAATAGTAACAACGATGCGACTGGAGCTGATGTGCCAAATGGTGAATCTCGCGTTATTGTTCGAACTACAAGTGAGTCTGGAATTGTAAATGATGGGTATCGCTGGCGCAAATACGGTCAGAAAATGGTTAAAGGCAACACAAATCCAAGGTACACACTAGCTTTTATTATGAATTGGTATGGTACATCGTGGATCCTTTCAAGATGCATTATTTTATCTCTCTTTCTCTATGTGCTCGCAAATTCATGAAACGATTTAATCTAATTGATTGCACGTTCTCTCCAATCTTCCAGAAATTACTATCGATGCTCGAGTCCCGGATGCCCCGTCAAAAAGCATGTTGAGAAGTCCTCTCAAAACACAACAACTGTCATAACTACCTATGAGGGTCAACATGATCATGTACCTCCCGCTGGAAGAGGTGTCCCTGAAAATACACCTACAAAATTGACTCCAATTCGAGCGACCATCCTTCCTAACCAGGGTCTTAAAAGTGAAATAAATGAGGAAGAGCAACAAAATGAAGATCCTAGTACCAAAGAAGATTCTATCAGCGATGCCATGATACGTGATTCAAGTTTGAAAGTTCCATGCAGATTAAGTGAACATGATACTCCTAGTACAACATCTGTTGCAGAACCCGCCCAAAGCTGA

Protein sequence

>MS.gene38063.t1

MVLSQESADHNVSSDKVQQQVSPQREIALSQGIDDVAKNEVSDSDAMACDLVSSHSSPPEQHSQSPKTPSHELPLMQSGQDKPSIIREKVTKDGYKWRKYGQKNVKGSEFKRSYYKCTYSDCPARKQFQISHDGNYEDCSYIGQHNHPKPESNTVPPVDCVLPVVEKGPHQSSFADVEGQENSSVEYEAVPRQVTPLRFHPPSKISRTDESKRLKKDNSNNDATGADVPNGESRVIVRTTSESGIVNDGYRWRKYGQKMVKGNTNPRNYYRCSSPGCPVKKHVEKSSQNTTTVITTYEGQHDHVPPAGRGVPENTPTKLTPIRATILPNQGLKSEINEEEQQNEDPSTKEDSISDAMIRDSSLKVPCRLSEHDTPSTTSVAEPAQS