AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene38077

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38077.t1 MTR_7g005280 77.519 258 20 7 1 222 1 256 4.05e-129 364
MS.gene38077.t1 MTR_8g099750 55.000 200 74 6 1 190 1 194 7.21e-70 213
MS.gene38077.t1 MTR_3g098810 54.950 202 72 5 1 184 1 201 4.56e-68 209
MS.gene38077.t1 MTR_7g070140 66.258 163 15 2 60 222 12 134 2.01e-66 201
MS.gene38077.t1 MTR_3g098810 61.842 152 56 2 1 151 1 151 4.72e-62 191
MS.gene38077.t1 MTR_4g081870 53.846 182 69 5 7 177 1 178 6.06e-58 184
MS.gene38077.t1 MTR_7g085220 51.136 176 71 3 12 172 5 180 1.65e-57 185
MS.gene38077.t1 MTR_2g080010 54.190 179 63 4 1 162 1 177 4.90e-57 184
MS.gene38077.t1 MTR_5g041940 57.862 159 53 3 13 161 1 155 9.77e-57 181
MS.gene38077.t1 MTR_4g089135 54.494 178 50 4 14 162 14 189 2.99e-56 182
MS.gene38077.t1 MTR_7g070150 89.474 95 7 2 103 197 1 92 1.07e-54 170
MS.gene38077.t1 MTR_2157s0010 54.601 163 58 4 15 162 8 169 1.95e-54 175
MS.gene38077.t1 MTR_7g100990 53.659 164 62 5 7 158 1 162 1.37e-53 175
MS.gene38077.t1 MTR_3g109340 49.721 179 82 4 4 176 9 185 2.29e-52 172
MS.gene38077.t1 MTR_3g088110 52.273 176 70 3 12 178 4 174 2.90e-52 170
MS.gene38077.t1 MTR_3g109340 49.444 180 82 4 4 176 9 186 3.64e-52 172
MS.gene38077.t1 MTR_3g064580 56.604 159 56 3 13 162 4 158 3.71e-52 178
MS.gene38077.t1 MTR_1g008740 51.429 175 77 4 12 180 10 182 3.93e-52 172
MS.gene38077.t1 MTR_1g008740 51.429 175 77 4 12 180 24 196 4.87e-52 172
MS.gene38077.t1 MTR_2g093810 53.247 154 60 3 15 158 14 165 1.49e-51 169
MS.gene38077.t1 MTR_6g084430 50.898 167 74 3 12 174 2 164 2.90e-51 169
MS.gene38077.t1 MTR_2g064090 53.459 159 61 4 13 162 4 158 1.11e-50 168
MS.gene38077.t1 MTR_2g079990 51.445 173 74 3 11 177 12 180 2.07e-50 167
MS.gene38077.t1 MTR_4g108760 50.581 172 71 5 1 162 1 168 2.54e-50 167
MS.gene38077.t1 MTR_2g062730 50.307 163 71 3 6 161 1 160 2.86e-50 167
MS.gene38077.t1 MTR_4g035590 56.494 154 55 5 15 161 8 156 3.85e-50 167
MS.gene38077.t1 MTR_3g435150 50.292 171 72 4 1 162 1 167 5.72e-50 165
MS.gene38077.t1 MTR_7g085260 50.000 174 78 4 13 178 15 187 7.65e-50 167
MS.gene38077.t1 MTR_5g021710 46.277 188 90 4 12 192 5 188 9.02e-50 166
MS.gene38077.t1 MTR_8g076110 51.220 164 68 5 15 171 6 164 1.06e-49 164
MS.gene38077.t1 MTR_4g036030 53.247 154 61 4 15 161 7 156 1.47e-49 165
MS.gene38077.t1 MTR_8g059170 46.789 218 85 7 12 216 11 210 1.82e-49 164
MS.gene38077.t1 MTR_8g094580 45.622 217 92 8 11 216 3 204 2.17e-49 163
MS.gene38077.t1 MTR_5g076850 53.049 164 65 4 13 168 4 163 2.25e-49 171
MS.gene38077.t1 MTR_5g012080 48.171 164 74 3 14 169 6 166 6.84e-49 163
MS.gene38077.t1 MTR_4g101680 50.617 162 69 3 14 168 6 163 1.03e-48 163
MS.gene38077.t1 MTR_6g032770 49.390 164 73 3 13 168 16 177 1.44e-48 163
MS.gene38077.t1 MTR_1g069805 44.175 206 107 4 15 215 10 212 1.55e-48 160
MS.gene38077.t1 MTR_3g070030 50.000 174 72 5 5 168 9 177 2.49e-48 162
MS.gene38077.t1 MTR_1g096430 50.318 157 67 3 12 161 4 156 4.03e-48 161
MS.gene38077.t1 MTR_6g012670 48.276 174 71 5 4 162 2 171 5.26e-48 160
MS.gene38077.t1 MTR_3g096920 49.724 181 75 6 11 182 3 176 5.33e-48 159
MS.gene38077.t1 MTR_2g078700 51.572 159 67 3 12 162 20 176 6.37e-48 162
MS.gene38077.t1 MTR_6g477900 46.023 176 81 4 13 178 4 175 1.06e-47 157
MS.gene38077.t1 MTR_8g024480 47.059 170 68 3 10 161 10 175 1.21e-46 159
MS.gene38077.t1 MTR_5g090970 45.024 211 90 6 8 204 12 210 2.95e-46 155
MS.gene38077.t1 MTR_2g079990 44.279 201 74 3 11 177 12 208 4.49e-46 157
MS.gene38077.t1 MTR_8g467490 38.710 248 116 6 1 215 1 245 4.58e-46 157
MS.gene38077.t1 MTR_5g040420 46.154 182 81 4 1 168 1 179 9.96e-46 156
MS.gene38077.t1 MTR_5g090970 44.811 212 90 6 8 204 12 211 1.03e-45 154
MS.gene38077.t1 MTR_2g064470 43.128 211 86 8 12 212 8 194 1.09e-45 154
MS.gene38077.t1 MTR_7g097090 51.351 148 66 3 15 159 10 154 1.45e-45 153
MS.gene38077.t1 MTR_3g116070 53.741 147 62 4 8 150 16 160 3.09e-45 154
MS.gene38077.t1 MTR_5g014300 47.170 159 76 2 11 161 2 160 1.05e-44 152
MS.gene38077.t1 MTR_2g068880 39.545 220 111 4 1 202 9 224 1.09e-44 151
MS.gene38077.t1 MTR_3g093040 46.835 158 72 3 13 162 106 259 2.71e-44 150
MS.gene38077.t1 MTR_2g068920 43.094 181 84 3 6 168 13 192 4.86e-44 149
MS.gene38077.t1 MTR_4g098630 47.647 170 76 4 15 176 6 170 9.40e-44 149
MS.gene38077.t1 MTR_7g011120 48.521 169 66 5 9 161 2 165 1.12e-43 149
MS.gene38077.t1 MTR_7g011130 54.015 137 54 3 9 141 13 144 1.18e-43 150
MS.gene38077.t1 MTR_5g069030 48.555 173 70 4 14 178 24 185 2.64e-43 154
MS.gene38077.t1 MTR_3g093050 48.447 161 71 3 15 167 22 178 2.98e-43 153
MS.gene38077.t1 MTR_3g093050 48.447 161 71 3 15 167 22 178 4.04e-43 153
MS.gene38077.t1 MTR_6g011860 45.198 177 79 4 1 162 1 174 2.13e-42 147
MS.gene38077.t1 MTR_3g096920 55.147 136 53 2 11 143 3 133 4.20e-42 145
MS.gene38077.t1 MTR_3g070040 45.882 170 75 3 9 168 2 164 6.69e-42 145
MS.gene38077.t1 MTR_3g096140 47.742 155 63 5 18 161 10 157 3.22e-40 139
MS.gene38077.t1 MTR_2g086880 44.242 165 80 3 18 178 21 177 1.09e-39 142
MS.gene38077.t1 MTR_1g090720 50.307 163 61 4 15 162 42 199 1.19e-39 142
MS.gene38077.t1 MTR_2g086880 44.242 165 80 3 18 178 21 177 1.20e-39 143
MS.gene38077.t1 MTR_3g096140 45.614 171 72 6 18 177 10 170 3.62e-39 138
MS.gene38077.t1 MTR_4g075980 44.242 165 83 5 1 162 4 162 5.69e-38 134
MS.gene38077.t1 MTR_1g090723 47.403 154 68 4 18 162 11 160 1.11e-37 138
MS.gene38077.t1 MTR_8g023840 46.667 150 69 5 15 158 11 155 1.69e-37 135
MS.gene38077.t1 MTR_1g097300 47.097 155 66 4 18 162 22 170 1.69e-37 137
MS.gene38077.t1 MTR_0036s0150 47.712 153 68 4 18 162 8 156 2.29e-37 137
MS.gene38077.t1 MTR_1g090723 47.059 153 69 4 18 162 11 159 2.67e-37 137
MS.gene38077.t1 MTR_1g090723 47.059 153 69 4 18 162 11 159 3.09e-37 137
MS.gene38077.t1 MTR_4g134460 46.452 155 75 4 12 162 52 202 2.72e-36 132
MS.gene38077.t1 MTR_8g063550 44.937 158 71 4 14 161 5 156 2.80e-36 130
MS.gene38077.t1 MTR_8g063550 44.937 158 71 4 14 161 5 156 9.79e-36 131
MS.gene38077.t1 MTR_8g063550 44.937 158 71 4 14 161 5 156 1.23e-35 130
MS.gene38077.t1 MTR_8g093580 43.671 158 73 4 14 161 5 156 7.29e-34 126
MS.gene38077.t1 MTR_4g094302 39.744 156 74 4 15 159 11 157 2.30e-32 116
MS.gene38077.t1 MTR_4g094302 43.411 129 62 3 15 141 11 130 4.49e-31 112
MS.gene38077.t1 MTR_8g023860 40.132 152 80 5 14 159 11 157 6.52e-31 117
MS.gene38077.t1 MTR_3g096140 44.681 141 60 5 32 161 3 136 2.18e-30 115
MS.gene38077.t1 MTR_8g094580 42.767 159 70 6 65 216 6 150 1.76e-29 110
MS.gene38077.t1 MTR_2g086690 40.491 163 77 6 16 162 5 163 2.42e-29 110
MS.gene38077.t1 MTR_8g023930 40.909 154 80 5 15 162 24 172 3.28e-29 114
MS.gene38077.t1 MTR_4g052620 40.123 162 80 6 15 162 5 163 1.04e-28 108
MS.gene38077.t1 MTR_8g023880 38.830 188 84 8 15 181 7 184 2.19e-28 108
MS.gene38077.t1 MTR_8g023900 38.994 159 86 5 15 167 12 165 6.58e-28 110
MS.gene38077.t1 MTR_8g023900 41.060 151 78 5 17 161 195 340 6.65e-28 110
MS.gene38077.t1 MTR_8g093790 39.130 161 74 6 6 163 1 140 1.94e-27 103
MS.gene38077.t1 MTR_7g105170 34.706 170 83 7 15 163 4 166 9.87e-24 95.5
MS.gene38077.t1 MTR_7g083370 33.099 142 84 5 10 146 5 140 9.51e-20 82.4
MS.gene38077.t1 MTR_7g083360 33.125 160 82 7 10 164 5 144 4.15e-19 80.9
MS.gene38077.t1 MTR_7g083330 33.742 163 96 6 13 169 16 172 4.73e-18 79.3
MS.gene38077.t1 MTR_3g096400 32.544 169 78 7 13 159 5 159 7.73e-18 79.0
MS.gene38077.t1 MTR_1g045470 33.735 166 94 7 23 177 13 173 2.59e-15 73.9
MS.gene38077.t1 MTR_4g078875 33.557 149 74 7 15 143 48 191 9.76e-14 68.9
MS.gene38077.t1 MTR_7g116460 32.432 148 85 6 21 157 11 154 1.21e-13 67.4
MS.gene38077.t1 MTR_2g014680 30.994 171 87 9 15 163 53 214 8.82e-13 66.6
MS.gene38077.t1 MTR_4g088245 29.167 168 94 8 15 163 68 229 7.84e-12 63.9
MS.gene38077.t1 MTR_2g090735 28.372 215 106 12 15 202 49 242 1.02e-11 63.2
MS.gene38077.t1 MTR_8g069160 30.872 149 79 7 15 144 68 211 1.68e-11 62.4
MS.gene38077.t1 MTR_8g102240 29.714 175 91 8 15 163 47 215 1.71e-11 63.2
MS.gene38077.t1 MTR_8g102240 29.714 175 91 8 15 163 47 215 1.71e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38077.t1 AT5G13180 72.500 160 40 2 7 164 6 163 9.47e-84 249
MS.gene38077.t1 AT2G33480 69.512 164 45 2 1 163 1 160 8.82e-82 245
MS.gene38077.t1 AT2G33480 68.675 166 45 2 1 163 1 162 2.15e-81 244
MS.gene38077.t1 AT3G04070 53.714 175 67 4 6 166 1 175 2.71e-56 182
MS.gene38077.t1 AT1G69490 55.556 171 61 4 7 167 1 166 6.48e-56 179
MS.gene38077.t1 AT1G61110 56.000 175 52 5 11 165 12 181 8.91e-55 178
MS.gene38077.t1 AT1G77450 52.273 176 67 5 6 171 1 169 1.48e-54 175
MS.gene38077.t1 AT3G04070 49.738 191 66 4 6 166 1 191 3.37e-54 177
MS.gene38077.t1 AT5G61430 53.892 167 65 5 6 164 7 169 1.04e-53 176
MS.gene38077.t1 AT2G24430 54.268 164 68 3 9 167 10 171 5.45e-53 173
MS.gene38077.t1 AT2G24430 54.268 164 68 3 9 167 10 171 5.45e-53 173
MS.gene38077.t1 AT5G39610 53.503 157 61 3 13 161 18 170 6.67e-53 172
MS.gene38077.t1 AT1G65910 44.144 222 99 5 13 213 4 221 1.24e-52 179
MS.gene38077.t1 AT5G07680 52.795 161 64 4 12 164 14 170 2.58e-52 172
MS.gene38077.t1 AT5G07680 53.797 158 61 4 15 164 3 156 2.94e-52 171
MS.gene38077.t1 AT3G15510 55.901 161 52 4 19 162 21 179 4.51e-52 172
MS.gene38077.t1 AT4G27410 51.534 163 69 3 12 168 11 169 8.90e-52 169
MS.gene38077.t1 AT1G33280 53.595 153 61 2 15 161 8 156 1.02e-51 169
MS.gene38077.t1 AT3G18400 53.416 161 66 4 12 167 2 158 2.06e-51 169
MS.gene38077.t1 AT5G17260 51.205 166 68 3 13 169 4 165 2.27e-51 173
MS.gene38077.t1 AT4G10350 47.368 209 71 8 15 214 9 187 3.19e-51 169
MS.gene38077.t1 AT1G54330 54.268 164 62 3 13 169 4 161 3.38e-51 168
MS.gene38077.t1 AT3G03200 49.123 171 74 3 13 174 4 170 6.98e-51 172
MS.gene38077.t1 AT1G62700 50.282 177 77 4 14 183 6 178 1.30e-50 169
MS.gene38077.t1 AT1G62700 50.282 177 77 4 14 183 6 178 1.30e-50 169
MS.gene38077.t1 AT1G76420 53.503 157 64 4 12 162 19 172 2.06e-50 167
MS.gene38077.t1 AT3G04060 53.797 158 62 4 13 162 18 172 2.51e-50 167
MS.gene38077.t1 AT1G52880 51.445 173 61 3 19 177 21 184 4.42e-50 166
MS.gene38077.t1 AT5G18270 52.532 158 64 3 13 162 19 173 4.98e-50 166
MS.gene38077.t1 AT1G12260 50.000 168 73 4 15 175 7 170 5.21e-50 166
MS.gene38077.t1 AT1G01720 45.327 214 98 6 13 216 5 209 7.74e-50 164
MS.gene38077.t1 AT5G18270 52.532 158 64 3 13 162 19 173 1.07e-49 165
MS.gene38077.t1 AT1G33060 52.903 155 61 3 15 161 24 174 1.35e-49 171
MS.gene38077.t1 AT1G33060 52.903 155 61 3 15 161 24 174 1.54e-49 171
MS.gene38077.t1 AT1G12260 50.000 168 73 4 15 175 7 170 2.01e-49 166
MS.gene38077.t1 AT2G18060 48.889 180 76 6 15 186 9 180 2.60e-49 165
MS.gene38077.t1 AT2G18060 48.889 180 76 6 15 186 9 180 2.60e-49 165
MS.gene38077.t1 AT5G66300 49.718 177 75 6 15 183 12 182 3.15e-49 162
MS.gene38077.t1 AT3G15170 50.595 168 72 5 12 171 17 181 3.53e-49 163
MS.gene38077.t1 AT4G36160 48.876 178 74 5 15 183 14 183 3.63e-49 165
MS.gene38077.t1 AT5G62380 53.797 158 58 6 13 161 5 156 3.72e-49 164
MS.gene38077.t1 AT5G62380 53.797 158 58 6 13 161 5 156 3.72e-49 164
MS.gene38077.t1 AT4G27410 46.667 180 69 3 12 168 11 186 3.91e-49 163
MS.gene38077.t1 AT4G36160 48.876 178 74 5 15 183 10 179 3.98e-49 165
MS.gene38077.t1 AT4G36160 48.876 178 74 5 15 183 10 179 3.98e-49 165
MS.gene38077.t1 AT3G17730 50.955 157 65 3 13 161 4 156 5.09e-49 160
MS.gene38077.t1 AT1G79580 51.899 158 65 3 11 161 13 166 7.57e-49 164
MS.gene38077.t1 AT1G79580 51.899 158 65 3 11 161 13 166 7.57e-49 164
MS.gene38077.t1 AT1G79580 51.899 158 65 3 11 161 13 166 7.57e-49 164
MS.gene38077.t1 AT1G79580 51.899 158 65 3 11 161 13 166 7.57e-49 164
MS.gene38077.t1 AT1G79580 51.899 158 65 3 11 161 13 166 7.57e-49 164
MS.gene38077.t1 AT4G35580 45.918 196 86 4 15 202 9 192 1.06e-48 167
MS.gene38077.t1 AT4G35580 45.918 196 86 4 15 202 9 192 1.16e-48 167
MS.gene38077.t1 AT4G35580 45.918 196 86 4 15 202 9 192 1.20e-48 167
MS.gene38077.t1 AT5G46590 45.506 178 85 3 11 179 2 176 4.70e-48 159
MS.gene38077.t1 AT5G63790 47.826 184 79 4 2 174 37 214 5.06e-48 160
MS.gene38077.t1 AT5G63790 47.826 184 79 4 2 174 47 224 5.83e-48 160
MS.gene38077.t1 AT5G53950 51.923 156 65 3 15 162 17 170 7.86e-48 161
MS.gene38077.t1 AT3G29035 57.143 133 50 2 12 141 21 149 1.22e-47 159
MS.gene38077.t1 AT1G52890 50.307 163 71 3 12 168 11 169 1.38e-47 159
MS.gene38077.t1 AT1G71930 49.351 154 67 3 15 161 9 158 3.75e-47 158
MS.gene38077.t1 AT1G71930 49.351 154 67 3 15 161 9 158 3.75e-47 158
MS.gene38077.t1 AT3G12977 44.809 183 88 5 12 185 15 193 4.42e-47 157
MS.gene38077.t1 AT3G15500 48.538 171 78 3 12 176 11 177 9.53e-47 157
MS.gene38077.t1 AT5G08790 52.071 169 62 6 12 168 4 165 1.10e-46 156
MS.gene38077.t1 AT2G46770 45.355 183 74 4 1 161 2 180 1.35e-46 158
MS.gene38077.t1 AT3G10490 51.592 157 63 3 15 162 27 179 5.67e-46 152
MS.gene38077.t1 AT3G10480 52.229 157 62 3 15 162 27 179 6.09e-46 158
MS.gene38077.t1 AT3G61910 45.143 175 70 5 10 162 6 176 8.23e-46 155
MS.gene38077.t1 AT1G56010 45.402 174 81 4 12 175 16 185 9.03e-46 154
MS.gene38077.t1 AT2G33480 65.421 107 30 2 60 163 3 105 1.47e-45 150
MS.gene38077.t1 AT1G32770 45.614 171 70 4 10 161 11 177 2.92e-45 154
MS.gene38077.t1 AT3G10500 50.000 164 70 3 7 162 1 160 6.23e-45 157
MS.gene38077.t1 AT5G04410 50.610 164 69 3 7 162 1 160 8.77e-45 157
MS.gene38077.t1 AT3G10480 51.923 156 63 3 15 162 27 178 9.21e-45 155
MS.gene38077.t1 AT5G46590 48.299 147 68 2 11 152 2 145 3.74e-44 149
MS.gene38077.t1 AT3G10490 51.592 157 63 3 15 162 27 179 4.47e-44 153
MS.gene38077.t1 AT4G17980 46.584 161 74 3 11 161 2 160 5.63e-44 148
MS.gene38077.t1 AT4G17980 46.584 161 74 3 11 161 2 160 8.55e-44 149
MS.gene38077.t1 AT5G39820 42.439 205 80 6 2 179 8 201 1.80e-43 149
MS.gene38077.t1 AT4G28530 47.337 169 67 5 14 163 9 174 2.64e-42 146
MS.gene38077.t1 AT2G17040 43.850 187 84 6 12 181 4 186 5.29e-42 144
MS.gene38077.t1 AT1G32510 46.386 166 77 3 15 168 6 171 3.61e-41 142
MS.gene38077.t1 AT3G10480 43.158 190 62 3 15 162 27 212 6.08e-41 146
MS.gene38077.t1 AT5G24590 47.368 171 67 6 7 161 1 164 7.75e-41 144
MS.gene38077.t1 AT3G12910 41.743 218 102 8 13 207 20 235 8.07e-41 141
MS.gene38077.t1 AT3G49530 46.452 155 72 4 15 161 13 164 2.45e-40 142
MS.gene38077.t1 AT3G49530 46.452 155 72 4 15 161 13 164 3.64e-40 143
MS.gene38077.t1 AT1G26870 45.882 170 74 5 8 162 10 176 9.88e-40 141
MS.gene38077.t1 AT2G43000 39.151 212 109 6 12 216 16 214 3.26e-39 136
MS.gene38077.t1 AT1G34190 47.239 163 71 5 9 162 11 167 2.33e-38 139
MS.gene38077.t1 AT2G02450 49.315 146 67 4 18 159 54 196 3.63e-38 137
MS.gene38077.t1 AT2G02450 49.315 146 67 4 18 159 54 196 3.63e-38 136
MS.gene38077.t1 AT1G34180 51.449 138 57 3 9 141 11 143 7.92e-38 136
MS.gene38077.t1 AT1G34180 51.449 138 57 3 9 141 11 143 2.13e-37 137
MS.gene38077.t1 AT1G34180 47.333 150 57 3 9 141 11 155 8.60e-37 134
MS.gene38077.t1 AT5G64060 43.750 160 78 3 11 162 2 157 1.30e-36 132
MS.gene38077.t1 AT1G34180 47.333 150 57 3 9 141 11 155 2.63e-36 134
MS.gene38077.t1 AT5G09330 41.379 203 102 5 11 204 2 196 4.36e-36 132
MS.gene38077.t1 AT5G09330 41.379 203 102 5 11 204 2 196 4.36e-36 132
MS.gene38077.t1 AT5G09330 41.379 203 102 5 11 204 2 196 4.36e-36 132
MS.gene38077.t1 AT5G09330 41.379 203 102 5 11 204 2 196 4.36e-36 132
MS.gene38077.t1 AT5G09330 41.379 203 102 5 11 204 2 196 4.36e-36 132
MS.gene38077.t1 AT4G10350 46.405 153 49 6 65 214 18 140 5.94e-35 125
MS.gene38077.t1 AT2G27300 40.994 161 78 4 7 158 1 153 9.39e-35 126
MS.gene38077.t1 AT5G22290 42.069 145 73 3 18 158 24 161 1.06e-34 126
MS.gene38077.t1 AT3G44290 42.759 145 71 3 18 158 17 153 2.34e-34 122
MS.gene38077.t1 AT3G44290 42.759 145 71 3 18 158 17 153 2.23e-33 122
MS.gene38077.t1 AT5G04395 42.857 147 67 2 12 142 25 170 4.23e-33 118
MS.gene38077.t1 AT5G61430 55.238 105 38 3 65 164 6 106 6.43e-33 120
MS.gene38077.t1 AT5G14000 36.571 175 104 3 1 172 1 171 8.58e-33 118
MS.gene38077.t1 AT1G02230 41.765 170 85 7 16 178 4 166 1.16e-32 121
MS.gene38077.t1 AT5G14000 40.816 147 80 3 10 153 10 152 6.45e-32 114
MS.gene38077.t1 AT3G12977 46.825 126 57 4 66 185 19 140 4.83e-31 114
MS.gene38077.t1 AT1G56010 48.673 113 48 2 69 175 10 118 6.87e-31 114
MS.gene38077.t1 AT1G02250 43.791 153 74 5 16 161 4 151 9.97e-31 116
MS.gene38077.t1 AT1G32870 44.379 169 76 5 4 162 1 161 1.46e-29 115
MS.gene38077.t1 AT1G32870 44.379 169 76 5 4 162 1 161 1.69e-29 115
MS.gene38077.t1 AT1G32870 44.379 169 76 5 4 162 37 197 1.99e-29 115
MS.gene38077.t1 AT5G64530 36.170 188 88 5 13 181 1 175 4.84e-29 107
MS.gene38077.t1 AT5G50820 35.749 207 99 6 13 214 15 192 1.33e-28 107
MS.gene38077.t1 AT4G01550 38.182 165 92 5 17 174 6 167 4.97e-28 110
MS.gene38077.t1 AT5G64530 43.511 131 59 4 13 141 1 118 8.93e-28 103
MS.gene38077.t1 AT3G04420 39.375 160 82 6 16 168 4 155 6.76e-27 104
MS.gene38077.t1 AT3G04420 39.375 160 82 6 16 168 4 155 8.28e-27 105
MS.gene38077.t1 AT4G01520 37.647 170 94 6 16 178 5 169 3.40e-26 103
MS.gene38077.t1 AT4G01540 38.690 168 91 6 18 178 7 169 3.78e-26 104
MS.gene38077.t1 AT4G01540 38.690 168 91 6 18 178 7 169 5.35e-26 104
MS.gene38077.t1 AT4G01540 38.690 168 91 6 18 178 7 169 5.81e-26 104
MS.gene38077.t1 AT4G01540 38.690 168 91 6 18 178 7 169 8.45e-26 104
MS.gene38077.t1 AT3G44350 37.267 161 84 5 15 162 5 161 6.42e-25 98.6
MS.gene38077.t1 AT1G02220 40.000 155 71 6 16 160 4 146 4.20e-24 99.0
MS.gene38077.t1 AT5G22380 36.250 160 83 5 18 162 8 163 2.76e-23 94.0
MS.gene38077.t1 AT3G44350 38.298 141 74 4 15 146 5 141 9.07e-23 90.9
MS.gene38077.t1 AT2G18060 46.465 99 43 4 90 186 2 92 1.67e-21 90.1
MS.gene38077.t1 AT3G10490 52.439 82 31 2 85 162 2 79 4.83e-21 90.1
MS.gene38077.t1 AT3G10490 52.439 82 31 2 85 162 2 79 4.83e-21 90.1
MS.gene38077.t1 AT4G28530 34.911 169 51 5 14 163 9 137 2.90e-20 87.4
MS.gene38077.t1 AT2G43000 35.417 144 77 4 77 216 5 136 2.23e-19 82.8
MS.gene38077.t1 AT1G01010 35.849 159 81 7 17 161 5 156 1.04e-18 84.3
MS.gene38077.t1 AT3G55210 32.370 173 83 8 15 164 11 172 3.45e-16 75.9
MS.gene38077.t1 AT3G56530 34.591 159 87 7 12 160 49 200 2.13e-15 73.9
MS.gene38077.t1 AT5G14000 51.613 62 30 0 1 62 1 62 6.35e-15 72.0
MS.gene38077.t1 AT5G22290 47.059 68 29 2 91 158 2 62 1.19e-14 70.9
MS.gene38077.t1 AT5G41090 27.848 158 94 4 15 159 8 158 1.97e-14 69.7
MS.gene38077.t1 AT4G29230 31.461 178 89 9 13 163 45 216 4.35e-14 70.9
MS.gene38077.t1 AT4G29230 31.461 178 89 9 13 163 46 217 4.36e-14 70.9
MS.gene38077.t1 AT1G28470 32.143 168 89 9 15 163 77 238 4.45e-14 70.1
MS.gene38077.t1 AT4G29230 31.461 178 89 9 13 163 46 217 4.89e-14 70.9
MS.gene38077.t1 AT5G56620 31.868 182 86 9 13 163 41 215 2.01e-12 65.9
MS.gene38077.t1 AT5G56620 33.750 160 69 8 13 141 41 194 2.09e-12 65.9
MS.gene38077.t1 AT5G56620 33.750 160 69 8 13 141 41 194 2.56e-12 65.5
MS.gene38077.t1 AT4G28500 30.178 169 92 8 15 163 59 221 6.95e-12 63.9

Find 48 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCACTCCCATCCTCTTT+TGG 0.255864 5.1:+78005304 MS.gene38077:CDS
TCGGTCCCCGTTTGGATACT+TGG 0.293238 5.1:-78004814 None:intergenic
TGTTGTTCTATTAGGTGATA+TGG 0.301557 5.1:+78004758 MS.gene38077:intron
CTCCTCAATCACAAATGAAT+TGG 0.308698 5.1:+78005255 MS.gene38077:CDS
GAGCTACAAACTCTGGTTAC+TGG 0.345872 5.1:+78004844 MS.gene38077:CDS
CTGTTAGATCGGTCCCCGTT+TGG 0.361093 5.1:-78004822 None:intergenic
ATCTTTGCAAGTCTGATCCT+TGG 0.370348 5.1:+78004547 MS.gene38077:CDS
TCTTTGCAAGTCTGATCCTT+GGG 0.393386 5.1:+78004548 MS.gene38077:CDS
ATCCAATTCATTTGTGATTG+AGG 0.401398 5.1:-78005257 None:intergenic
TTACTGGAAGGCAACTGGTT+TGG 0.413426 5.1:+78004860 MS.gene38077:CDS
AAGACGACTCGTGAAGTTGT+TGG 0.418647 5.1:+78004906 MS.gene38077:CDS
TTCATTTGTGATTGAGGAGG+AGG 0.421555 5.1:-78005251 None:intergenic
CTTCATCTGTTGGATGAAAA+CGG 0.429980 5.1:-78004452 None:intergenic
TCTGGTTACTGGAAGGCAAC+TGG 0.438388 5.1:+78004855 MS.gene38077:CDS
CTCAGCTTCAAGTTCAAAAG+TGG 0.464412 5.1:+78005180 MS.gene38077:CDS
ACAACAAGTTCTTCATCTGT+TGG 0.464543 5.1:-78004462 None:intergenic
GACTTGCAAAGATCAACTTC+AGG 0.465462 5.1:-78004537 None:intergenic
AAGATCAACTTCAGGAATGA+TGG 0.468508 5.1:-78004529 None:intergenic
AAGAAGCCAAGTATCCAAAC+GGG 0.477993 5.1:+78004808 MS.gene38077:CDS
TTCCTCTCACTCCAACCCCT+TGG 0.484311 5.1:+78005013 MS.gene38077:CDS
AAAGGGAAAGAGAAGACCTT+AGG 0.496728 5.1:-78004498 None:intergenic
TGTTCAATATTTGAAGCCTA+AGG 0.506309 5.1:+78004482 MS.gene38077:CDS
GAATGATGGAAGCAGGTAAA+GGG 0.510410 5.1:-78004515 None:intergenic
GGTTGGAGTGAGAGGAAGTG+AGG 0.514880 5.1:-78005007 None:intergenic
TAAGCATTTCCAAAAGAGGA+TGG 0.518802 5.1:-78005313 None:intergenic
GGATTAAGCATTTCCAAAAG+AGG 0.521576 5.1:-78005317 None:intergenic
AAAGAAGCCAAGTATCCAAA+CGG 0.524088 5.1:+78004807 MS.gene38077:CDS
GGAATGATGGAAGCAGGTAA+AGG 0.533367 5.1:-78004516 None:intergenic
AGTTTGTAGCTCTGTTAGAT+CGG 0.541992 5.1:-78004833 None:intergenic
ACTTCAGGAATGATGGAAGC+AGG 0.542259 5.1:-78004522 None:intergenic
GACCAAGGGGTTGGAGTGAG+AGG 0.548262 5.1:-78005015 None:intergenic
CTCATGGTTCAAGAACTGAT+TGG 0.548704 5.1:+78004967 MS.gene38077:CDS
AGAAAGACTGACCAAGGGGT+TGG 0.548887 5.1:-78005024 None:intergenic
TCTAACAGAGCTACAAACTC+TGG 0.560803 5.1:+78004837 MS.gene38077:CDS
AAGCATTTCCAAAAGAGGAT+GGG 0.563423 5.1:-78005312 None:intergenic
CAATTCATTTGTGATTGAGG+AGG 0.568174 5.1:-78005254 None:intergenic
TCTGATCCTTGGGATTTACC+TGG 0.570788 5.1:+78004558 MS.gene38077:CDS
GGATGAAAACGGAAACCTGC+TGG 0.571341 5.1:-78004441 None:intergenic
CGCATATTTCTGAAGAGTAG+AGG 0.580742 5.1:+78005136 MS.gene38077:CDS
TACAGAGGCAAACCACCTCA+TGG 0.581454 5.1:+78004951 MS.gene38077:CDS
GGTGAAGTGAGATTGCCAGC+AGG 0.595430 5.1:+78004426 MS.gene38077:CDS
AGCATACCAGGTAAATCCCA+AGG 0.597008 5.1:-78004564 None:intergenic
TCAGTTCTTGAACCATGAGG+TGG 0.615010 5.1:-78004963 None:intergenic
TACAAACTCTGGTTACTGGA+AGG 0.635081 5.1:+78004848 MS.gene38077:CDS
ATTTCTGAAGAGTAGAGGTG+AGG 0.681363 5.1:+78005141 MS.gene38077:CDS
TAGGTGATATGGAACAAGAG+AGG 0.694959 5.1:+78004769 MS.gene38077:intron
CAATCAGTTCTTGAACCATG+AGG 0.707588 5.1:-78004966 None:intergenic
AGAAGCCAAGTATCCAAACG+GGG 0.742904 5.1:+78004809 MS.gene38077:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAATATATGAATGAAT+TGG + chr5.1:78005083-78005102 MS.gene38077:intron 10.0%
!! TATTAATATATGAATGAATT+GGG + chr5.1:78005084-78005103 MS.gene38077:intron 10.0%
!! AAAATAGAAAAGAAAAGAAA+AGG - chr5.1:78004593-78004612 None:intergenic 15.0%
!!! ATGAATTTTATGAAGAAGAA+TGG + chr5.1:78004405-78004424 MS.gene38077:CDS 20.0%
! AATTCAGAGAAAAGAAAGAA+AGG - chr5.1:78005055-78005074 None:intergenic 25.0%
ATCCAATTCATTTGTGATTG+AGG - chr5.1:78005260-78005279 None:intergenic 30.0%
TAGTAGAAGTTATCATGTTC+TGG - chr5.1:78004699-78004718 None:intergenic 30.0%
TGTTGTTCTATTAGGTGATA+TGG + chr5.1:78004758-78004777 MS.gene38077:intron 30.0%
! GGTTTTGCAGAATGAAAATT+GGG + chr5.1:78005105-78005124 MS.gene38077:intron 30.0%
! TGAGTATGTGTTGTTCTATT+AGG + chr5.1:78004750-78004769 MS.gene38077:intron 30.0%
! TGTTCAATATTTGAAGCCTA+AGG + chr5.1:78004482-78004501 MS.gene38077:CDS 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG + chr5.1:78004936-78004955 MS.gene38077:CDS 30.0%
AAAGAAGCCAAGTATCCAAA+CGG + chr5.1:78004807-78004826 MS.gene38077:CDS 35.0%
AAGAAAAGGTAAAGCATACC+AGG - chr5.1:78004579-78004598 None:intergenic 35.0%
AAGAAAGAAAGACTGACCAA+GGG - chr5.1:78005032-78005051 None:intergenic 35.0%
AAGATCAACTTCAGGAATGA+TGG - chr5.1:78004532-78004551 None:intergenic 35.0%
AAGCATTTCCAAAAGAGGAT+GGG - chr5.1:78005315-78005334 None:intergenic 35.0%
ACAACAAGTTCTTCATCTGT+TGG - chr5.1:78004465-78004484 None:intergenic 35.0%
CAATTCATTTGTGATTGAGG+AGG - chr5.1:78005257-78005276 None:intergenic 35.0%
CTCCTCAATCACAAATGAAT+TGG + chr5.1:78005255-78005274 MS.gene38077:CDS 35.0%
CTTCATCTGTTGGATGAAAA+CGG - chr5.1:78004455-78004474 None:intergenic 35.0%
TAAGCATTTCCAAAAGAGGA+TGG - chr5.1:78005316-78005335 None:intergenic 35.0%
! AGTTTGTAGCTCTGTTAGAT+CGG - chr5.1:78004836-78004855 None:intergenic 35.0%
! GGGTTTTGCAGAATGAAAAT+TGG + chr5.1:78005104-78005123 MS.gene38077:intron 35.0%
AAAGGGAAAGAGAAGACCTT+AGG - chr5.1:78004501-78004520 None:intergenic 40.0%
AAGAAGCCAAGTATCCAAAC+GGG + chr5.1:78004808-78004827 MS.gene38077:CDS 40.0%
AGAAAGAAAGACTGACCAAG+GGG - chr5.1:78005031-78005050 None:intergenic 40.0%
ATCTTTGCAAGTCTGATCCT+TGG + chr5.1:78004547-78004566 MS.gene38077:CDS 40.0%
CAATCAGTTCTTGAACCATG+AGG - chr5.1:78004969-78004988 None:intergenic 40.0%
CTCATGGTTCAAGAACTGAT+TGG + chr5.1:78004967-78004986 MS.gene38077:CDS 40.0%
GAAGAAAGAAAGACTGACCA+AGG - chr5.1:78005033-78005052 None:intergenic 40.0%
GACTTGCAAAGATCAACTTC+AGG - chr5.1:78004540-78004559 None:intergenic 40.0%
TACAAACTCTGGTTACTGGA+AGG + chr5.1:78004848-78004867 MS.gene38077:CDS 40.0%
TACTGCTGAACAATGTCATG+TGG + chr5.1:78004720-78004739 MS.gene38077:intron 40.0%
TAGGTGATATGGAACAAGAG+AGG + chr5.1:78004769-78004788 MS.gene38077:intron 40.0%
TCTAACAGAGCTACAAACTC+TGG + chr5.1:78004837-78004856 MS.gene38077:CDS 40.0%
TCTTTGCAAGTCTGATCCTT+GGG + chr5.1:78004548-78004567 MS.gene38077:CDS 40.0%
TTCATTTGTGATTGAGGAGG+AGG - chr5.1:78005254-78005273 None:intergenic 40.0%
! ATTTCTGAAGAGTAGAGGTG+AGG + chr5.1:78005141-78005160 MS.gene38077:CDS 40.0%
! CGCATATTTCTGAAGAGTAG+AGG + chr5.1:78005136-78005155 MS.gene38077:CDS 40.0%
! CTCAGCTTCAAGTTCAAAAG+TGG + chr5.1:78005180-78005199 MS.gene38077:CDS 40.0%
! GAATGATGGAAGCAGGTAAA+GGG - chr5.1:78004518-78004537 None:intergenic 40.0%
AAGACGACTCGTGAAGTTGT+TGG + chr5.1:78004906-78004925 MS.gene38077:CDS 45.0%
AGAAGCCAAGTATCCAAACG+GGG + chr5.1:78004809-78004828 MS.gene38077:CDS 45.0%
AGCATACCAGGTAAATCCCA+AGG - chr5.1:78004567-78004586 None:intergenic 45.0%
GAGCTACAAACTCTGGTTAC+TGG + chr5.1:78004844-78004863 MS.gene38077:CDS 45.0%
TCAGTTCTTGAACCATGAGG+TGG - chr5.1:78004966-78004985 None:intergenic 45.0%
TCTGATCCTTGGGATTTACC+TGG + chr5.1:78004558-78004577 MS.gene38077:CDS 45.0%
TTACTGGAAGGCAACTGGTT+TGG + chr5.1:78004860-78004879 MS.gene38077:CDS 45.0%
! AACTCACTCCCATCCTCTTT+TGG + chr5.1:78005304-78005323 MS.gene38077:CDS 45.0%
! ACTTCAGGAATGATGGAAGC+AGG - chr5.1:78004525-78004544 None:intergenic 45.0%
! GGAATGATGGAAGCAGGTAA+AGG - chr5.1:78004519-78004538 None:intergenic 45.0%
AACACAGACGTCGGACACAA+TGG + chr5.1:78004654-78004673 MS.gene38077:intron 50.0%
AGAAAGACTGACCAAGGGGT+TGG - chr5.1:78005027-78005046 None:intergenic 50.0%
CGAAGCACAAACACAGACGT+CGG + chr5.1:78004645-78004664 MS.gene38077:intron 50.0%
GGATGAAAACGGAAACCTGC+TGG - chr5.1:78004444-78004463 None:intergenic 50.0%
TACAGAGGCAAACCACCTCA+TGG + chr5.1:78004951-78004970 MS.gene38077:CDS 50.0%
TCTGGTTACTGGAAGGCAAC+TGG + chr5.1:78004855-78004874 MS.gene38077:CDS 50.0%
CTGTTAGATCGGTCCCCGTT+TGG - chr5.1:78004825-78004844 None:intergenic 55.0%
GGTGAAGTGAGATTGCCAGC+AGG + chr5.1:78004426-78004445 MS.gene38077:CDS 55.0%
GGTTGGAGTGAGAGGAAGTG+AGG - chr5.1:78005010-78005029 None:intergenic 55.0%
TCGGTCCCCGTTTGGATACT+TGG - chr5.1:78004817-78004836 None:intergenic 55.0%
TTCCTCTCACTCCAACCCCT+TGG + chr5.1:78005013-78005032 MS.gene38077:CDS 55.0%
GACCAAGGGGTTGGAGTGAG+AGG - chr5.1:78005018-78005037 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 78004396 78005336 78004396 ID=MS.gene38077
chr5.1 mRNA 78004396 78005336 78004396 ID=MS.gene38077.t1;Parent=MS.gene38077
chr5.1 exon 78004396 78004579 78004396 ID=MS.gene38077.t1.exon1;Parent=MS.gene38077.t1
chr5.1 CDS 78004396 78004579 78004396 ID=cds.MS.gene38077.t1;Parent=MS.gene38077.t1
chr5.1 exon 78004772 78005034 78004772 ID=MS.gene38077.t1.exon2;Parent=MS.gene38077.t1
chr5.1 CDS 78004772 78005034 78004772 ID=cds.MS.gene38077.t1;Parent=MS.gene38077.t1
chr5.1 exon 78005115 78005336 78005115 ID=MS.gene38077.t1.exon3;Parent=MS.gene38077.t1
chr5.1 CDS 78005115 78005336 78005115 ID=cds.MS.gene38077.t1;Parent=MS.gene38077.t1
Gene Sequence

>MS.gene38077

ATGGAGAAGATGAATTTTATGAAGAAGAATGGTGAAGTGAGATTGCCAGCAGGTTTCCGTTTTCATCCAACAGATGAAGAACTTGTTGTTCAATATTTGAAGCCTAAGGTCTTCTCTTTCCCTTTACCTGCTTCCATCATTCCTGAAGTTGATCTTTGCAAGTCTGATCCTTGGGATTTACCTGGTATGCTTTACCTTTTCTTTTCTTTTCTATTTTGTTCATTTATAATCATAACTTAATGAAGCACACGAAGCACAAACACAGACGTCGGACACAATGGACACTGACACGTTCAGACACCAGAACATGATAACTTCTACTACTACTGCTGAACAATGTCATGTGGATTAATTTGAGTATGTGTTGTTCTATTAGGTGATATGGAACAAGAGAGGTACTTTTTCAGTACTAAAGAAGCCAAGTATCCAAACGGGGACCGATCTAACAGAGCTACAAACTCTGGTTACTGGAAGGCAACTGGTTTGGACAAAGAAATCATGAATTCTTCGAAGACGACTCGTGAAGTTGTTGGTATGAAGAAAACTCTTGTTTTCTACAGAGGCAAACCACCTCATGGTTCAAGAACTGATTGGATCATGCATGAATATCGCCTCACTTCCTCTCACTCCAACCCCTTGGTCAGTCTTTCTTTCTTCCTTTCTTTCTTTTCTCTGAATTTGTAATTAATATTAATATATGAATGAATTGGGTTTTGCAGAATGAAAATTGGGTTCTATGTCGCATATTTCTGAAGAGTAGAGGTGAGGTGAAGAAGAAGAAGAACTCAGCTTCAAGTTCAAAAGTGGTTGTTTTCTATGATTTCTTCGCAGAGAAGAAGAAAAATACTGATGCATCCTCCTCCTCAATCACAAATGAATTGGATGAACATGAAAATGAAGACAGCAGTAACTCACTCCCATCCTCTTTTGGAAATGCTTAA
Protein sequence

>MS.gene38077.t1

MEKMNFMKKNGEVRLPAGFRFHPTDEELVVQYLKPKVFSFPLPASIIPEVDLCKSDPWDLPGDMEQERYFFSTKEAKYPNGDRSNRATNSGYWKATGLDKEIMNSSKTTREVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLTSSHSNPLNENWVLCRIFLKSRGEVKKKKNSASSSKVVVFYDFFAEKKKNTDASSSSITNELDEHENEDSSNSLPSSFGNA