AlfalfaGEDB | MS.gene38098

M. sativa cultivar XinJiangDaYe / MS.gene38098

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0005575 GO:0005634 GO:0008270 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0046872 GO:0046914 GO:0097159 GO:0110165 GO:1901363
PFAM: PF12874.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38098.t1	AFK48577.1	82.6	551	63	2	7	556	14	532	5.00E-98	368.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38098.t1	I3T7T5	82.6	551	63	2	7	556	14	532	3.6e-98	368.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene38098.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38098.t1	MTR_5g097950	82.940	551	61	3	7	556	14	532	0.0	875
MS.gene38098.t1	MTR_5g097950	82.765	528	58	3	30	556	1	496	0.0	836
MS.gene38098.t1	MTR_3g023750	67.811	233	71	1	328	556	161	393	2.23e-99	306
MS.gene38098.t1	MTR_3g023750	42.274	343	146	9	65	392	80	385	2.60e-60	205
MS.gene38098.t1	MTR_3g023750	30.568	229	123	5	264	458	161	387	5.04e-16	80.5
MS.gene38098.t1	MTR_3g023750	29.518	166	93	3	385	548	82	225	8.61e-12	67.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38098.t1	AT5G61190	24.590	244	143	7	317	551	188	399	6.41e-12	68.9
MS.gene38098.t1	AT5G61190	26.852	216	114	9	365	546	298	503	9.40e-11	65.1
MS.gene38098.t1	AT5G61190	24.590	244	143	7	317	551	188	399	6.41e-12	68.9
MS.gene38098.t1	AT5G61190	26.852	216	114	9	365	546	298	503	9.40e-11	65.1
MS.gene38098.t1	AT5G61190	24.896	241	140	7	317	548	188	396	7.51e-12	68.9
MS.gene38098.t1	AT5G61190	26.852	216	114	9	365	546	298	503	8.86e-11	65.5
MS.gene38098.t1	AT5G61190	24.896	241	140	7	317	548	188	396	8.01e-12	68.9
MS.gene38098.t1	AT5G61190	24.590	244	143	7	317	551	188	399	8.53e-12	68.6
MS.gene38098.t1	AT5G61190	24.896	241	140	7	317	548	188	396	9.23e-12	68.6
MS.gene38098.t1	AT5G61190	24.896	241	140	7	317	548	188	396	9.30e-12	68.6

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Find 112 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTGCTAAGAAAATCA+AGG	0.554241	5.1:-78324138	MS.gene38098:CDS
AAACAGGTTGATAGTATACA+AGG	0.585879	5.1:-78326211	MS.gene38098:CDS
AAACGTAAAGCTGTGGAAAG+AGG	0.559914	5.1:-78323870	MS.gene38098:CDS
AAACTGTCAGATCCAAAAGT+CGG	0.650475	5.1:-78324014	MS.gene38098:CDS
AACACAAGAAGAATTTGCAG+CGG	0.684214	5.1:-78326339	MS.gene38098:CDS
AAGAAGGCAGGGTTAATCAC+TGG	0.566902	5.1:-78323741	MS.gene38098:CDS
AAGCTTTGCTGACTTTGGTT+TGG	0.410273	5.1:+78326431	None:intergenic
AATGCCATCATTAGACTTCA+AGG	0.445716	5.1:+78324208	None:intergenic
AATTGAAGTGCCTATTGCGG+TGG	0.664606	5.1:+78323965	None:intergenic
ACAAAATCAACCTGTTTCGC+AGG	0.519194	5.1:+78326055	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTAGTGTTGTCAATTG+TGG	+	chr5.1:78326068-78326087	None:intergenic	30.0%
AAAAGCTGCTAAGAAAATCA+AGG	-	chr5.1:78326335-78326354	MS.gene38098:CDS	30.0%
AACCTAATATATGACCATAC+AGG	-	chr5.1:78325948-78325967	MS.gene38098:CDS	30.0%
AACCTATGAATCACAAAAAG+TGG	+	chr5.1:78326244-78326263	None:intergenic	30.0%
ACATATAACAAACATGTTGC+TGG	-	chr5.1:78324868-78324887	MS.gene38098:intron	30.0%
AGATTATATATAGTTTGGCC+TGG	+	chr5.1:78325806-78325825	None:intergenic	30.0%
ATAACAGTGTTGCATACAAA+AGG	+	chr5.1:78324928-78324947	None:intergenic	30.0%
ATTCAGCTAAAATGCATGTA+AGG	-	chr5.1:78325184-78325203	MS.gene38098:intron	30.0%
CATATAACAAACATGTTGCT+GGG	-	chr5.1:78324869-78324888	MS.gene38098:intron	30.0%
CTATCTATAGATATACATCC+AGG	+	chr5.1:78326131-78326150	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	78323737	78326758	78323737	ID=MS.gene38098
chr5.1	mRNA	78323737	78326758	78323737	ID=MS.gene38098.t1;Parent=MS.gene38098
chr5.1	exon	78325586	78326758	78325586	ID=MS.gene38098.t1.exon1;Parent=MS.gene38098.t1
chr5.1	CDS	78325586	78326758	78325586	ID=cds.MS.gene38098.t1;Parent=MS.gene38098.t1
chr5.1	exon	78323737	78324234	78323737	ID=MS.gene38098.t1.exon2;Parent=MS.gene38098.t1
chr5.1	CDS	78323737	78324234	78323737	ID=cds.MS.gene38098.t1;Parent=MS.gene38098.t1

Gene Sequence

>MS.gene38098

ATGCTTCTAATATTGCAGGCTGTCGGTTCATCACACGAGACTTCAGCAGCGCCTGCAAGTTTGCCTTCTGTTCAGAATGGTATTCCAATGCTTGTAATTTTGCAGTCTGCTGGTTCATCACACGAGACTTCAGCAGCACCTGCAAGTTTGCCTTCTGCGCAGAATGGTATGCCAATGCTTCTAATATTGCCGGCTGTTGGTTCGTCACACCACACTTCAGCAGCGCCTGCAAGTTTGCCTTCTGCGCGTAATGGTTCCTGGCAACTTCAAATTTATGGCAATCAGACTACAATAATGTTGCCTAACCAAACCAAAGTCAGCAAAGCTTTCAGATGTGAAGTGTGTGAAATTGATGTTAATAGCCAAGTCTCTTTTGAAAAGCACATTGCTGGAAAGAAACACAAGAAGAATTTGCAGCGGCAGACTAATCGTACAATTGCATCTCATGCAAATTTACAAACTGACACAAGTAGTATCCACGGTCAAGCGTTAATTGGCCCTGTACGCGAGCAATCAGAGCCTAAGAAACAGGTTGATAGTATACAAGGACAAGCGTTGATTGGTCCTGTAGCCGAACAATCAGAGCCTAAGAAACAGGTTGATTCTGTTAAGAATGTACAAACTGACACAAGTAGTATCCAAGGACAAGCGTTAATTGGTCCTGTCGCCGAACAATCAGAGCCTGCGAAACAGGTTGATTTTGTTAAGAATGTACAAACTGACACAAGTAGTATCCAAGGACAAGCGTTAATTGGTCCTGTAGCTGAACAATCAGAGCCTAAGAAACAGGTTGATTCTGTTAAGAATGTACAAACTGACACAAGTAATATCCAAGGACAAGCGTTAATTGGTCCTGTAGCCGAACAATCAGAGCCTACGAAACAGGTTGATTCTGTTAAGAATGTACAAACTGACACAAGTAGTATCCAAGGACAAGTGTTAATTTGTCCTGCAGCCGAACAATCAGAGCCTAAGAAACAGGTTGATTCTGTTAAGAATGTACATACTGACGCAAGTAAGATTCAAAGACAAGCATTAATTGGTCCTGTAGCAGAACAATCAGAGCCTAAGAAACAGGTTGATTCTGTTAAGGTTTGCTCAACGTGCAATGTTGTATGCGTTGGTCAAGATACATATAACAAACATGTTGCTGGGAGAAAGCATGCTGCTAAGGTGAATTTACATTATCCTTTTGTATGCAACACTGTTATATATTTTGCCGTTTTCTCATTCTACACCGTAGTTAATGATTACTTTTACTGTTTATCCACACATAATGCACACTAGTGGCACACACTAATATGTATAATTTTTTATAACCATGTCTTACATGAAAATAAAATTATTCTGACAGAACAAGAACATTAAAAGGACAAAATTTTATCTTGATTGGACACACAAGACAAGATAGGATCACTGTGGGTTTAGCTAATTAGCTCTGTAGGCCATTCAGCTAAAATGCATGTAAGGTAGCTTGTTATGTGAATATTTTGTATAACCGTGGGTTTTCTGAAATCTCAGCAAGACACCGTGATTTTTCAAAAGCTACATAGTGCTTTGCAAAATCATAGTGGTTGCAACCCACCAAGATTCTCTTATTTTCATACTTTTGAGTATTCTAGTTCAAACTAGTTGGCTTACTCGTCCACTGGGAAAAAGTAACTGGAAGTAAGGAAAAAATCGTTGTTCGGGAGATGTAGACAGCAGCAATAAGTGGGAAGGTTTTTTGAGGTTTTGCAAATGAGTTTAATGTTGTGTTTCGGATACTAATTCCTGCAATTTGACCATGAAACGACTGTAACGCTGACTGCCACGGGCGCTACGCTGCCCTAATTTCAGTAGAACCTAGCTACCGCTACGTCATGGCACAGTATTATAGCGTCCGCCACAGCCTCTGTTAACTACAGAGGTATTAACAACAACAATAGTCTTTTTCCACTAGAAGGATTTGATGACGTCATAATGAAATTACATTCGATAAGCACTTTTTCTTTATTTATTTTTCTGGAAGTACTGTTGTTATAGTTAGTTGTCTTAAATGTACTTTTCTCGTTAATTTTGTAGTGCCAGGCCAAACTATATATAATCTTTGAAACATTTGAACAGTTAAATATGATAAATAAATGTCTTATGTTGTTTTTCTTAAAATTAGTAGTTCAGTTATGTAAAAAATATAGTCTTTTGGCTTCTAAATTTGATGACATCAGTGAGAACCTAATATATGACCATACAGGAAATGATAGAACTCTTGATTTCTAGTTTTGTAGCTTAATTACAATTGATTATTTGTATTTTTAGTGACCTTGAACAATCAAATATTTTTTTAATCCACAATTGACAACACTAGTTTTAGCTAGATTTTATTATCATTACTTGTTTGCTATCAGTTATCCTGGATGTATATCTATAGATAGCTAATAGCTAAGTATTTGTTGTATTATCATTACTTGAACTGTAAGAAAAGTATAAGGCAGGGCGCCATTTATGAAATGTTTCTGAGTTGACCACTTTTTGTGATTCATAGGTTGCCTTGAAGTCTAATGATGGCATTGGTCCATCTGTTGCCGAACTCAAGCGTAACGGTGATGCTCTAATTGAAAAAGCTGCTAAGAAAATCAAGGTTGCTGAATCTGTATGGTGTGAATTTTGCAAGATTAATTGTAACAGCAAGTATAGCTACACTGCACACTTGTCCGGTAAGAAACACTTGAAGAACATGGAGAAACTGTCAGATCCAAAAGTCGGTGTTGGCAGCGGTGCCACTACCACCACCACCGCAATAGGCACTTCAATTGGGCCACAGGAAAAGCCAGATTCAGATAAACCGAAAACAAAGGAGGTATCAGTACTTGATATCGAGACAGAGAAACGTAAAGCTGTGGAAAGAGGAGCTGCAGTCGATGATATTAAATTGTGCACTTTATGCAATGTGGTGTGTAATAGCCAGGCAAATTTAAATAATCACCTTAGTGACCATAATCATGCTGCTATGGTGAAGAAGGCAGGGTTAATCACTGGTTGA

Protein sequence

>MS.gene38098.t1

MLLILQAVGSSHETSAAPASLPSVQNGIPMLVILQSAGSSHETSAAPASLPSAQNGMPMLLILPAVGSSHHTSAAPASLPSARNGSWQLQIYGNQTTIMLPNQTKVSKAFRCEVCEIDVNSQVSFEKHIAGKKHKKNLQRQTNRTIASHANLQTDTSSIHGQALIGPVREQSEPKKQVDSIQGQALIGPVAEQSEPKKQVDSVKNVQTDTSSIQGQALIGPVAEQSEPAKQVDFVKNVQTDTSSIQGQALIGPVAEQSEPKKQVDSVKNVQTDTSNIQGQALIGPVAEQSEPTKQVDSVKNVQTDTSSIQGQVLICPAAEQSEPKKQVDSVKNVHTDASKIQRQALIGPVAEQSEPKKQVDSVKVCSTCNVVCVGQDTYNKHVAGRKHAAKVALKSNDGIGPSVAELKRNGDALIEKAAKKIKVAESVWCEFCKINCNSKYSYTAHLSGKKHLKNMEKLSDPKVGVGSGATTTTTAIGTSIGPQEKPDSDKPKTKEVSVLDIETEKRKAVERGAAVDDIKLCTLCNVVCNSQANLNNHLSDHNHAAMVKKAGLITG