Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38098.t1 | AFK48577.1 | 82.6 | 551 | 63 | 2 | 7 | 556 | 14 | 532 | 5.00E-98 | 368.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38098.t1 | I3T7T5 | 82.6 | 551 | 63 | 2 | 7 | 556 | 14 | 532 | 3.6e-98 | 368.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene38098.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38098.t1 | MTR_5g097950 | 82.940 | 551 | 61 | 3 | 7 | 556 | 14 | 532 | 0.0 | 875 |
| MS.gene38098.t1 | MTR_5g097950 | 82.765 | 528 | 58 | 3 | 30 | 556 | 1 | 496 | 0.0 | 836 |
| MS.gene38098.t1 | MTR_3g023750 | 67.811 | 233 | 71 | 1 | 328 | 556 | 161 | 393 | 2.23e-99 | 306 |
| MS.gene38098.t1 | MTR_3g023750 | 42.274 | 343 | 146 | 9 | 65 | 392 | 80 | 385 | 2.60e-60 | 205 |
| MS.gene38098.t1 | MTR_3g023750 | 30.568 | 229 | 123 | 5 | 264 | 458 | 161 | 387 | 5.04e-16 | 80.5 |
| MS.gene38098.t1 | MTR_3g023750 | 29.518 | 166 | 93 | 3 | 385 | 548 | 82 | 225 | 8.61e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38098.t1 | AT5G61190 | 24.590 | 244 | 143 | 7 | 317 | 551 | 188 | 399 | 6.41e-12 | 68.9 |
| MS.gene38098.t1 | AT5G61190 | 26.852 | 216 | 114 | 9 | 365 | 546 | 298 | 503 | 9.40e-11 | 65.1 |
| MS.gene38098.t1 | AT5G61190 | 24.590 | 244 | 143 | 7 | 317 | 551 | 188 | 399 | 6.41e-12 | 68.9 |
| MS.gene38098.t1 | AT5G61190 | 26.852 | 216 | 114 | 9 | 365 | 546 | 298 | 503 | 9.40e-11 | 65.1 |
| MS.gene38098.t1 | AT5G61190 | 24.896 | 241 | 140 | 7 | 317 | 548 | 188 | 396 | 7.51e-12 | 68.9 |
| MS.gene38098.t1 | AT5G61190 | 26.852 | 216 | 114 | 9 | 365 | 546 | 298 | 503 | 8.86e-11 | 65.5 |
| MS.gene38098.t1 | AT5G61190 | 24.896 | 241 | 140 | 7 | 317 | 548 | 188 | 396 | 8.01e-12 | 68.9 |
| MS.gene38098.t1 | AT5G61190 | 24.590 | 244 | 143 | 7 | 317 | 551 | 188 | 399 | 8.53e-12 | 68.6 |
| MS.gene38098.t1 | AT5G61190 | 24.896 | 241 | 140 | 7 | 317 | 548 | 188 | 396 | 9.23e-12 | 68.6 |
| MS.gene38098.t1 | AT5G61190 | 24.896 | 241 | 140 | 7 | 317 | 548 | 188 | 396 | 9.30e-12 | 68.6 |
| MS.gene38098.t1 | AT5G61190 | 24.896 | 241 | 140 | 7 | 317 | 548 | 188 | 396 | 9.83e-12 | 68.6 |
| MS.gene38098.t1 | AT5G61190 | 24.590 | 244 | 143 | 7 | 317 | 551 | 188 | 399 | 1.03e-11 | 68.6 |
| MS.gene38098.t1 | AT5G61190 | 24.896 | 241 | 140 | 7 | 317 | 548 | 94 | 302 | 1.05e-11 | 68.6 |
| MS.gene38098.t1 | AT5G61190 | 24.896 | 241 | 140 | 7 | 317 | 548 | 94 | 302 | 1.05e-11 | 68.6 |
Find 112 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGGCAACTTCAAATTTA+TGG | 0.103793 | 5.1:-78326481 | MS.gene38098:CDS |
| ATTCAAAGACAAGCATTAAT+TGG | 0.294362 | 5.1:-78325716 | MS.gene38098:CDS |
| CGCGCAGAAGGCAAACTTGC+AGG | 0.304037 | 5.1:+78326511 | None:intergenic |
| ATACTATCAACCTGTTTCTT+AGG | 0.309233 | 5.1:+78326217 | None:intergenic |
| TGCGCAGAAGGCAAACTTGC+AGG | 0.309844 | 5.1:+78326598 | None:intergenic |
| CTTCTGCGCGTAATGGTTCC+TGG | 0.318364 | 5.1:-78326498 | MS.gene38098:CDS |
| ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | 5.1:+78325671 | None:intergenic |
| ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | 5.1:+78325767 | None:intergenic |
| ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | 5.1:+78325959 | None:intergenic |
| ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | 5.1:+78326151 | None:intergenic |
| TCCAATGCTTCTAATATTGC+AGG | 0.326872 | 5.1:-78326740 | None:intergenic |
| CCGCTGCCAACACCGACTTT+TGG | 0.333602 | 5.1:+78324002 | None:intergenic |
| ACCGCAATAGGCACTTCAAT+TGG | 0.345252 | 5.1:-78323963 | MS.gene38098:CDS |
| TCACCATAGCAGCATGATTA+TGG | 0.346041 | 5.1:+78323763 | None:intergenic |
| ATCCACGGTCAAGCGTTAAT+TGG | 0.351888 | 5.1:-78326262 | MS.gene38098:CDS |
| GTTCTTCAAGTGTTTCTTAC+CGG | 0.360756 | 5.1:+78324043 | None:intergenic |
| GGCTCTGATTGCTCGCGTAC+AGG | 0.361042 | 5.1:+78326238 | None:intergenic |
| ACAATCAGAGCCTGCGAAAC+AGG | 0.362586 | 5.1:-78326065 | MS.gene38098:CDS |
| ATCCAAGGACAAGCGTTAAT+TGG | 0.362815 | 5.1:-78325908 | MS.gene38098:CDS |
| GCCAATGCTTCTAATATTGC+CGG | 0.369202 | 5.1:-78326566 | MS.gene38098:CDS |
| TGAACAGAAGGCAAACTTGC+AGG | 0.371807 | 5.1:+78326685 | None:intergenic |
| GAAACAGGTTGATTCTGTTA+AGG | 0.378526 | 5.1:-78325666 | MS.gene38098:CDS |
| ATCCAAGGACAAGCGTTAAT+TGG | 0.381545 | 5.1:-78326004 | MS.gene38098:CDS |
| ATCCAAGGACAAGCGTTAAT+TGG | 0.381545 | 5.1:-78326100 | MS.gene38098:CDS |
| TTTCTTAGGCTCTGATTGTT+CGG | 0.390268 | 5.1:+78325781 | None:intergenic |
| TTTCTTAGGCTCTGATTGTT+CGG | 0.390268 | 5.1:+78326165 | None:intergenic |
| TTTCGTAGGCTCTGATTGTT+CGG | 0.392564 | 5.1:+78325877 | None:intergenic |
| GGCTCTGATTGTTCGGCTAC+AGG | 0.393012 | 5.1:+78326172 | None:intergenic |
| GGCTCTGATTGTTCGGCTGC+AGG | 0.400148 | 5.1:+78325788 | None:intergenic |
| GCAATCAGAGCCTAAGAAAC+AGG | 0.410131 | 5.1:-78326227 | MS.gene38098:CDS |
| AAGCTTTGCTGACTTTGGTT+TGG | 0.410273 | 5.1:+78326431 | None:intergenic |
| GGCTCTGATTGTTCTGCTAC+AGG | 0.410383 | 5.1:+78325692 | None:intergenic |
| TCTGAAAGCTTTGCTGACTT+TGG | 0.410594 | 5.1:+78326426 | None:intergenic |
| GCCATAAATTTGAAGTTGCC+AGG | 0.413010 | 5.1:+78326480 | None:intergenic |
| GACTGCAAAATTACAAGCAT+TGG | 0.415529 | 5.1:+78326652 | None:intergenic |
| ACTACCACCACCACCGCAAT+AGG | 0.416616 | 5.1:-78323975 | MS.gene38098:CDS |
| GGCTCTGATTGTTCGGCTAC+AGG | 0.423574 | 5.1:+78325884 | None:intergenic |
| GCCTGCAATATTAGAAGCAT+TGG | 0.428224 | 5.1:+78326739 | None:intergenic |
| ACAATCAGAGCCTACGAAAC+AGG | 0.430644 | 5.1:-78325873 | MS.gene38098:CDS |
| ACAATCAGAGCCTAAGAAAC+AGG | 0.432492 | 5.1:-78325681 | MS.gene38098:CDS |
| GGTGATTATTTAAATTTGCC+TGG | 0.434831 | 5.1:+78323793 | None:intergenic |
| GGCTCTGATTGTTCAGCTAC+AGG | 0.438343 | 5.1:+78325980 | None:intergenic |
| GGCTCTGATTGTTCGGCGAC+AGG | 0.441022 | 5.1:+78326076 | None:intergenic |
| ACAATCAGAGCCTAAGAAAC+AGG | 0.441726 | 5.1:-78325777 | MS.gene38098:CDS |
| ACAATCAGAGCCTAAGAAAC+AGG | 0.441726 | 5.1:-78326161 | MS.gene38098:CDS |
| AATGCCATCATTAGACTTCA+AGG | 0.445716 | 5.1:+78324208 | None:intergenic |
| ACAATCAGAGCCTAAGAAAC+AGG | 0.446022 | 5.1:-78325969 | MS.gene38098:CDS |
| GACCAATTAACGCTTGTCCT+TGG | 0.453949 | 5.1:+78325906 | None:intergenic |
| GACCAATTAACGCTTGTCCT+TGG | 0.453949 | 5.1:+78326002 | None:intergenic |
| GACCAATTAACGCTTGTCCT+TGG | 0.453949 | 5.1:+78326098 | None:intergenic |
| ACATATAACAAACATGTTGC+TGG | 0.455549 | 5.1:-78325605 | MS.gene38098:CDS |
| AGCTACACTGCACACTTGTC+CGG | 0.457647 | 5.1:-78324062 | MS.gene38098:CDS |
| GACAAATTAACACTTGTCCT+TGG | 0.467410 | 5.1:+78325810 | None:intergenic |
| TTTCGCAGGCTCTGATTGTT+CGG | 0.469070 | 5.1:+78326069 | None:intergenic |
| ATCACCGTTACGCTTGAGTT+CGG | 0.470795 | 5.1:+78324172 | None:intergenic |
| AGTTTGCCTTCTGCGCGTAA+TGG | 0.472468 | 5.1:-78326505 | MS.gene38098:CDS |
| CTTCTAATATTGCCGGCTGT+TGG | 0.475497 | 5.1:-78326559 | MS.gene38098:CDS |
| GCTCTGATTGCTCGCGTACA+GGG | 0.481346 | 5.1:+78326239 | None:intergenic |
| GCCGGCAATATTAGAAGCAT+TGG | 0.481716 | 5.1:+78326565 | None:intergenic |
| TTGCTGACTTTGGTTTGGTT+AGG | 0.492552 | 5.1:+78326436 | None:intergenic |
| CCGCAATAGGCACTTCAATT+GGG | 0.497753 | 5.1:-78323962 | MS.gene38098:CDS |
| TATTGCGGTGGTGGTGGTAG+TGG | 0.498143 | 5.1:+78323977 | None:intergenic |
| CGCTTGAGTTCGGCAACAGA+TGG | 0.499244 | 5.1:+78324182 | None:intergenic |
| AGTTTGCCTTCTGTTCAGAA+TGG | 0.514605 | 5.1:-78326679 | MS.gene38098:CDS |
| CATATAACAAACATGTTGCT+GGG | 0.516681 | 5.1:-78325604 | MS.gene38098:CDS |
| AGGCACTTCAATTGGGCCAC+AGG | 0.517728 | 5.1:-78323955 | MS.gene38098:CDS |
| TGAAGTGCCTATTGCGGTGG+TGG | 0.518303 | 5.1:+78323968 | None:intergenic |
| ACAAAATCAACCTGTTTCGC+AGG | 0.519194 | 5.1:+78326055 | None:intergenic |
| ATACAAGGACAAGCGTTGAT+TGG | 0.519587 | 5.1:-78326196 | MS.gene38098:CDS |
| CAGCATGATTATGGTCACTA+AGG | 0.520547 | 5.1:+78323772 | None:intergenic |
| TCATGCTGCTATGGTGAAGA+AGG | 0.523999 | 5.1:-78323757 | MS.gene38098:CDS |
| GGCATACCATTCTGCGCAGA+AGG | 0.536308 | 5.1:+78326586 | None:intergenic |
| GCTGCTATGGTGAAGAAGGC+AGG | 0.537781 | 5.1:-78323753 | MS.gene38098:CDS |
| CCAAAAGTCGGTGTTGGCAG+CGG | 0.544449 | 5.1:-78324002 | MS.gene38098:CDS |
| CTTCTAATATTGCAGGCTGT+CGG | 0.548494 | 5.1:-78326733 | MS.gene38098:CDS |
| AAAAGCTGCTAAGAAAATCA+AGG | 0.554241 | 5.1:-78324138 | MS.gene38098:CDS |
| TGGGAGAAAGCATGCTGCTA+AGG | 0.554649 | 5.1:-78325585 | MS.gene38098:intron |
| TCAAGGTTGCTGAATCTGTA+TGG | 0.557151 | 5.1:-78324121 | MS.gene38098:CDS |
| AAACGTAAAGCTGTGGAAAG+AGG | 0.559914 | 5.1:-78323870 | MS.gene38098:CDS |
| ACAGAATCAACCTGTTTCGT+AGG | 0.566760 | 5.1:+78325863 | None:intergenic |
| AAGAAGGCAGGGTTAATCAC+TGG | 0.566902 | 5.1:-78323741 | MS.gene38098:CDS |
| TGACCATAATCATGCTGCTA+TGG | 0.569530 | 5.1:-78323766 | MS.gene38098:CDS |
| GGAATACCATTCTGAACAGA+AGG | 0.573481 | 5.1:+78326673 | None:intergenic |
| AGTGCCTATTGCGGTGGTGG+TGG | 0.576879 | 5.1:+78323971 | None:intergenic |
| AGTTTGCCTTCTGCGCAGAA+TGG | 0.578105 | 5.1:-78326592 | MS.gene38098:CDS |
| TGGTGTGACGAACCAACAGC+CGG | 0.583490 | 5.1:+78326547 | None:intergenic |
| CAATGTGGTGTGTAATAGCC+AGG | 0.584891 | 5.1:-78323811 | MS.gene38098:CDS |
| AAACAGGTTGATAGTATACA+AGG | 0.585879 | 5.1:-78326211 | MS.gene38098:CDS |
| TCAGATCCAAAAGTCGGTGT+TGG | 0.587240 | 5.1:-78324008 | MS.gene38098:CDS |
| CAGGAACCATTACGCGCAGA+AGG | 0.591477 | 5.1:+78326499 | None:intergenic |
| GTTGCCTTGAAGTCTAATGA+TGG | 0.591860 | 5.1:-78324212 | MS.gene38098:CDS |
| GCAGGGTTAATCACTGGTTG+AGG | 0.595222 | 5.1:-78323735 | None:intergenic |
| CTGCTATGGTGAAGAAGGCA+GGG | 0.602051 | 5.1:-78323752 | MS.gene38098:CDS |
| GACAGAGAAACGTAAAGCTG+TGG | 0.602727 | 5.1:-78323877 | MS.gene38098:CDS |
| TTGAAGTCTAATGATGGCAT+TGG | 0.606462 | 5.1:-78324206 | MS.gene38098:CDS |
| ACTGACACAAGTAGTATCCA+AGG | 0.607332 | 5.1:-78325827 | MS.gene38098:CDS |
| ACTGACACAAGTAGTATCCA+AGG | 0.607332 | 5.1:-78326019 | MS.gene38098:CDS |
| ACTGACACAAGTAGTATCCA+AGG | 0.607332 | 5.1:-78326115 | MS.gene38098:CDS |
| TTGCAGGCGCTGCTGAAGTG+TGG | 0.623480 | 5.1:+78326527 | None:intergenic |
| ACGTGCAATGTTGTATGCGT+TGG | 0.626948 | 5.1:-78325635 | MS.gene38098:CDS |
| TTCAGATAAACCGAAAACAA+AGG | 0.627362 | 5.1:-78323922 | MS.gene38098:CDS |
| CCCAATTGAAGTGCCTATTG+CGG | 0.632472 | 5.1:+78323962 | None:intergenic |
| ACTGACACAAGTAATATCCA+AGG | 0.644465 | 5.1:-78325923 | MS.gene38098:CDS |
| AAACTGTCAGATCCAAAAGT+CGG | 0.650475 | 5.1:-78324014 | MS.gene38098:CDS |
| TAAGAAACACTTGAAGAACA+TGG | 0.658000 | 5.1:-78324039 | MS.gene38098:CDS |
| AATTGAAGTGCCTATTGCGG+TGG | 0.664606 | 5.1:+78323965 | None:intergenic |
| GTTGCCGAACTCAAGCGTAA+CGG | 0.668233 | 5.1:-78324176 | MS.gene38098:CDS |
| ACTGACACAAGTAGTATCCA+CGG | 0.668670 | 5.1:-78326277 | MS.gene38098:CDS |
| GGCCAATTAACGCTTGACCG+TGG | 0.678744 | 5.1:+78326260 | None:intergenic |
| AGATAAACCGAAAACAAAGG+AGG | 0.682827 | 5.1:-78323919 | MS.gene38098:CDS |
| AACACAAGAAGAATTTGCAG+CGG | 0.684214 | 5.1:-78326339 | MS.gene38098:CDS |
| ATTGTGCACTTTATGCAATG+TGG | 0.685678 | 5.1:-78323826 | MS.gene38098:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCTTTATTTATTTTTC+TGG | - | chr5.1:78325722-78325741 | MS.gene38098:CDS | 10.0% |
| !! | AAAAAATATTTGATTGTTCA+AGG | + | chr5.1:78326041-78326060 | None:intergenic | 15.0% |
| !! | TTCAAAGATTATATATAGTT+TGG | + | chr5.1:78325811-78325830 | None:intergenic | 15.0% |
| !!! | ATGTAAAAAATATAGTCTTT+TGG | - | chr5.1:78325899-78325918 | MS.gene38098:CDS | 15.0% |
| !! | GTAAAAGTAATCATTAACTA+CGG | + | chr5.1:78324977-78324996 | None:intergenic | 20.0% |
| !!! | TTTTATTTTCATGTAAGACA+TGG | + | chr5.1:78325059-78325078 | None:intergenic | 20.0% |
| ! | ACTCAGAAACATTTCATAAA+TGG | + | chr5.1:78326218-78326237 | None:intergenic | 25.0% |
| ! | ATGAGTTTAATGTTGTGTTT+CGG | - | chr5.1:78325477-78325496 | MS.gene38098:intron | 25.0% |
| ! | ATTCAAAGACAAGCATTAAT+TGG | - | chr5.1:78324757-78324776 | MS.gene38098:intron | 25.0% |
| ! | GTATGAAAATAAGAGAATCT+TGG | + | chr5.1:78325324-78325343 | None:intergenic | 25.0% |
| !! | GGACAAAATTTTATCTTGAT+TGG | - | chr5.1:78325107-78325126 | MS.gene38098:intron | 25.0% |
| !! | TGAACTGTAAGAAAAGTATA+AGG | - | chr5.1:78326185-78326204 | MS.gene38098:CDS | 25.0% |
| !! | TGAATATTTTGTATAACCGT+GGG | - | chr5.1:78325219-78325238 | MS.gene38098:intron | 25.0% |
| !!! | ATGTAGCTTTTGAAAAATCA+CGG | + | chr5.1:78325268-78325287 | None:intergenic | 25.0% |
| AAAACTAGTGTTGTCAATTG+TGG | + | chr5.1:78326068-78326087 | None:intergenic | 30.0% | |
| AAAAGCTGCTAAGAAAATCA+AGG | - | chr5.1:78326335-78326354 | MS.gene38098:CDS | 30.0% | |
| AACCTAATATATGACCATAC+AGG | - | chr5.1:78325948-78325967 | MS.gene38098:CDS | 30.0% | |
| AACCTATGAATCACAAAAAG+TGG | + | chr5.1:78326244-78326263 | None:intergenic | 30.0% | |
| ACATATAACAAACATGTTGC+TGG | - | chr5.1:78324868-78324887 | MS.gene38098:intron | 30.0% | |
| AGATTATATATAGTTTGGCC+TGG | + | chr5.1:78325806-78325825 | None:intergenic | 30.0% | |
| ATAACAGTGTTGCATACAAA+AGG | + | chr5.1:78324928-78324947 | None:intergenic | 30.0% | |
| ATTCAGCTAAAATGCATGTA+AGG | - | chr5.1:78325184-78325203 | MS.gene38098:intron | 30.0% | |
| CATATAACAAACATGTTGCT+GGG | - | chr5.1:78324869-78324888 | MS.gene38098:intron | 30.0% | |
| CTATCTATAGATATACATCC+AGG | + | chr5.1:78326131-78326150 | None:intergenic | 30.0% | |
| GAAAATAAGAGAATCTTGGT+GGG | + | chr5.1:78325320-78325339 | None:intergenic | 30.0% | |
| GACAGAACAAGAACATTAAA+AGG | - | chr5.1:78325086-78325105 | MS.gene38098:intron | 30.0% | |
| GGTGATTATTTAAATTTGCC+TGG | + | chr5.1:78326683-78326702 | None:intergenic | 30.0% | |
| GTAAGGAAAAAATCGTTGTT+CGG | - | chr5.1:78325405-78325424 | MS.gene38098:intron | 30.0% | |
| TAAGAAACACTTGAAGAACA+TGG | - | chr5.1:78326434-78326453 | MS.gene38098:CDS | 30.0% | |
| TAAGGAAAAAATCGTTGTTC+GGG | - | chr5.1:78325406-78325425 | MS.gene38098:intron | 30.0% | |
| TGAAAATAAGAGAATCTTGG+TGG | + | chr5.1:78325321-78325340 | None:intergenic | 30.0% | |
| TTCAGATAAACCGAAAACAA+AGG | - | chr5.1:78326551-78326570 | MS.gene38098:CDS | 30.0% | |
| TTCCTGTATGGTCATATATT+AGG | + | chr5.1:78325953-78325972 | None:intergenic | 30.0% | |
| ! | AATAGTCTTTTTCCACTAGA+AGG | - | chr5.1:78325660-78325679 | MS.gene38098:CDS | 30.0% |
| ! | ATACTATCAACCTGTTTCTT+AGG | + | chr5.1:78324259-78324278 | None:intergenic | 30.0% |
| ! | GTGAATATTTTGTATAACCG+TGG | - | chr5.1:78325218-78325237 | MS.gene38098:intron | 30.0% |
| ! | TGTAAGAAAAGTATAAGGCA+GGG | - | chr5.1:78326190-78326209 | MS.gene38098:CDS | 30.0% |
| !! | AAACAGGTTGATAGTATACA+AGG | - | chr5.1:78324262-78324281 | MS.gene38098:intron | 30.0% |
| !! | GTATTCTAGTTCAAACTAGT+TGG | - | chr5.1:78325350-78325369 | MS.gene38098:intron | 30.0% |
| !!! | TTACATGCATTTTAGCTGAA+TGG | + | chr5.1:78325185-78325204 | None:intergenic | 30.0% |
| AAACTGTCAGATCCAAAAGT+CGG | - | chr5.1:78326459-78326478 | MS.gene38098:CDS | 35.0% | |
| AACACAAGAAGAATTTGCAG+CGG | - | chr5.1:78324134-78324153 | MS.gene38098:CDS | 35.0% | |
| AATACCTCTGTAGTTAACAG+AGG | + | chr5.1:78325631-78325650 | None:intergenic | 35.0% | |
| AATGCCATCATTAGACTTCA+AGG | + | chr5.1:78326268-78326287 | None:intergenic | 35.0% | |
| ACTGACACAAGTAATATCCA+AGG | - | chr5.1:78324550-78324569 | MS.gene38098:intron | 35.0% | |
| AGATAAACCGAAAACAAAGG+AGG | - | chr5.1:78326554-78326573 | MS.gene38098:CDS | 35.0% | |
| AGCTAGGTTCTACTGAAATT+AGG | + | chr5.1:78325568-78325587 | None:intergenic | 35.0% | |
| AGTGCTTTGCAAAATCATAG+TGG | - | chr5.1:78325288-78325307 | MS.gene38098:intron | 35.0% | |
| ATTGTGCACTTTATGCAATG+TGG | - | chr5.1:78326647-78326666 | MS.gene38098:CDS | 35.0% | |
| GACAAATTAACACTTGTCCT+TGG | + | chr5.1:78324666-78324685 | None:intergenic | 35.0% | |
| GACTGCAAAATTACAAGCAT+TGG | + | chr5.1:78323824-78323843 | None:intergenic | 35.0% | |
| GAGTTCTATCATTTCCTGTA+TGG | + | chr5.1:78325965-78325984 | None:intergenic | 35.0% | |
| GCTAGGTTCTACTGAAATTA+GGG | + | chr5.1:78325567-78325586 | None:intergenic | 35.0% | |
| GGAAAAAGTAACTGGAAGTA+AGG | - | chr5.1:78325388-78325407 | MS.gene38098:intron | 35.0% | |
| GTTCTTCAAGTGTTTCTTAC+CGG | + | chr5.1:78326433-78326452 | None:intergenic | 35.0% | |
| TACGGTGTAGAATGAGAAAA+CGG | + | chr5.1:78324959-78324978 | None:intergenic | 35.0% | |
| TCCTGGCAACTTCAAATTTA+TGG | - | chr5.1:78323992-78324011 | MS.gene38098:CDS | 35.0% | |
| TTGAAGTCTAATGATGGCAT+TGG | - | chr5.1:78326267-78326286 | MS.gene38098:CDS | 35.0% | |
| ! | ACAGAATCAACCTGTTTCTT+AGG | + | chr5.1:78324325-78324344 | None:intergenic | 35.0% |
| ! | CTGTAAGAAAAGTATAAGGC+AGG | - | chr5.1:78326189-78326208 | MS.gene38098:CDS | 35.0% |
| ! | GTTTTCGGTTTATCTGAATC+TGG | + | chr5.1:78326549-78326568 | None:intergenic | 35.0% |
| ! | TGTGCTTTTCAAAAGAGACT+TGG | + | chr5.1:78324102-78324121 | None:intergenic | 35.0% |
| ! | TTTCTTAGGCTCTGATTGTT+CGG | + | chr5.1:78324311-78324330 | None:intergenic | 35.0% |
| !! | GAAACAGGTTGATTCTGTTA+AGG | - | chr5.1:78324327-78324346 | MS.gene38098:intron | 35.0% |
| !! | GTTTAGCTAATTAGCTCTGT+AGG | - | chr5.1:78325159-78325178 | MS.gene38098:intron | 35.0% |
| !! | TCTTTTGAAAAGCACATTGC+TGG | - | chr5.1:78324106-78324125 | MS.gene38098:CDS | 35.0% |
| !! | TTGTTTGCTATCAGTTATCC+TGG | - | chr5.1:78326110-78326129 | MS.gene38098:CDS | 35.0% |
| !!! | ACTGATACCTCCTTTGTTTT+CGG | + | chr5.1:78326564-78326583 | None:intergenic | 35.0% |
| !!! | ATAAGTGGGAAGGTTTTTTG+AGG | - | chr5.1:78325446-78325465 | MS.gene38098:intron | 35.0% |
| !!! | GACCACTTTTTGTGATTCAT+AGG | - | chr5.1:78326239-78326258 | MS.gene38098:CDS | 35.0% |
| AAACGTAAAGCTGTGGAAAG+AGG | - | chr5.1:78326603-78326622 | MS.gene38098:CDS | 40.0% | |
| AAGACAAGATAGGATCACTG+TGG | - | chr5.1:78325136-78325155 | MS.gene38098:intron | 40.0% | |
| ACAAAATCAACCTGTTTCGC+AGG | + | chr5.1:78324421-78324440 | None:intergenic | 40.0% | |
| ACAATCAGAGCCTAAGAAAC+AGG | - | chr5.1:78324312-78324331 | MS.gene38098:intron | 40.0% | |
| ACAGAATCAACCTGTTTCGT+AGG | + | chr5.1:78324613-78324632 | None:intergenic | 40.0% | |
| ACGTCATCAAATCCTTCTAG+TGG | + | chr5.1:78325675-78325694 | None:intergenic | 40.0% | |
| ACTGACACAAGTAGTATCCA+AGG | - | chr5.1:78324196-78324215 | MS.gene38098:CDS | 40.0% | |
| ACTGACACAAGTAGTATCCA+CGG | - | chr5.1:78324196-78324215 | MS.gene38098:CDS | 40.0% | |
| AGACAAGATAGGATCACTGT+GGG | - | chr5.1:78325137-78325156 | MS.gene38098:intron | 40.0% | |
| AGTTTGCCTTCTGTTCAGAA+TGG | - | chr5.1:78323794-78323813 | MS.gene38098:CDS | 40.0% | |
| ATCCAAGGACAAGCGTTAAT+TGG | - | chr5.1:78324373-78324392 | MS.gene38098:intron | 40.0% | |
| ATGTAGACAGCAGCAATAAG+TGG | - | chr5.1:78325431-78325450 | MS.gene38098:intron | 40.0% | |
| CAGCATGATTATGGTCACTA+AGG | + | chr5.1:78326704-78326723 | None:intergenic | 40.0% | |
| CTGAGATTTCAGAAAACCCA+CGG | + | chr5.1:78325238-78325257 | None:intergenic | 40.0% | |
| CTTCTAATATTGCAGGCTGT+CGG | - | chr5.1:78323740-78323759 | MS.gene38098:CDS | 40.0% | |
| GCCAATGCTTCTAATATTGC+CGG | - | chr5.1:78323907-78323926 | MS.gene38098:CDS | 40.0% | |
| GGAATACCATTCTGAACAGA+AGG | + | chr5.1:78323803-78323822 | None:intergenic | 40.0% | |
| GTTGCCTTGAAGTCTAATGA+TGG | - | chr5.1:78326261-78326280 | MS.gene38098:CDS | 40.0% | |
| TCAAGGTTGCTGAATCTGTA+TGG | - | chr5.1:78326352-78326371 | MS.gene38098:CDS | 40.0% | |
| TCACCATAGCAGCATGATTA+TGG | + | chr5.1:78326713-78326732 | None:intergenic | 40.0% | |
| TCGTTTCATGGTCAAATTGC+AGG | + | chr5.1:78325512-78325531 | None:intergenic | 40.0% | |
| TGACCATAATCATGCTGCTA+TGG | - | chr5.1:78326707-78326726 | MS.gene38098:CDS | 40.0% | |
| TGTAGACAGCAGCAATAAGT+GGG | - | chr5.1:78325432-78325451 | MS.gene38098:intron | 40.0% | |
| TTGGACACACAAGACAAGAT+AGG | - | chr5.1:78325126-78325145 | MS.gene38098:intron | 40.0% | |
| ! | CTCGTTAATTTTGTAGTGCC+AGG | - | chr5.1:78325785-78325804 | MS.gene38098:CDS | 40.0% |
| ! | CTTGTAATTTTGCAGTCTGC+TGG | - | chr5.1:78323827-78323846 | MS.gene38098:CDS | 40.0% |
| ! | GCCATAAATTTGAAGTTGCC+AGG | + | chr5.1:78323996-78324015 | None:intergenic | 40.0% |
| ! | TTTCGTAGGCTCTGATTGTT+CGG | + | chr5.1:78324599-78324618 | None:intergenic | 40.0% |
| !! | AAGCTTTGCTGACTTTGGTT+TGG | + | chr5.1:78324045-78324064 | None:intergenic | 40.0% |
| !! | ATACAAGGACAAGCGTTGAT+TGG | - | chr5.1:78324277-78324296 | MS.gene38098:intron | 40.0% |
| !! | TCTGAAAGCTTTGCTGACTT+TGG | + | chr5.1:78324050-78324069 | None:intergenic | 40.0% |
| !! | TTGCTGACTTTGGTTTGGTT+AGG | + | chr5.1:78324040-78324059 | None:intergenic | 40.0% |
| !!! | TTCCAGTTACTTTTTCCCAG+TGG | + | chr5.1:78325385-78325404 | None:intergenic | 40.0% |
| AAGAAGGCAGGGTTAATCAC+TGG | - | chr5.1:78326732-78326751 | MS.gene38098:CDS | 45.0% | |
| AATACTGTGCCATGACGTAG+CGG | + | chr5.1:78325592-78325611 | None:intergenic | 45.0% | |
| ACAATCAGAGCCTACGAAAC+AGG | - | chr5.1:78324600-78324619 | MS.gene38098:intron | 45.0% | |
| ACAGCCTCTGTTAACTACAG+AGG | - | chr5.1:78325624-78325643 | MS.gene38098:CDS | 45.0% | |
| ACCGCAATAGGCACTTCAAT+TGG | - | chr5.1:78326510-78326529 | MS.gene38098:CDS | 45.0% | |
| ACGTGCAATGTTGTATGCGT+TGG | - | chr5.1:78324838-78324857 | MS.gene38098:intron | 45.0% | |
| ATCACCGTTACGCTTGAGTT+CGG | + | chr5.1:78326304-78326323 | None:intergenic | 45.0% | |
| ATCCACGGTCAAGCGTTAAT+TGG | - | chr5.1:78324211-78324230 | MS.gene38098:CDS | 45.0% | |
| CAATGTGGTGTGTAATAGCC+AGG | - | chr5.1:78326662-78326681 | MS.gene38098:CDS | 45.0% | |
| CCACACATAATGCACACTAG+TGG | - | chr5.1:78325004-78325023 | MS.gene38098:intron | 45.0% | |
| CCACTAGTGTGCATTATGTG+TGG | + | chr5.1:78325007-78325026 | None:intergenic | 45.0% | |
| CCGCAATAGGCACTTCAATT+GGG | - | chr5.1:78326511-78326530 | MS.gene38098:CDS | 45.0% | |
| GACAGAGAAACGTAAAGCTG+TGG | - | chr5.1:78326596-78326615 | MS.gene38098:CDS | 45.0% | |
| GACCAATTAACGCTTGTCCT+TGG | + | chr5.1:78324378-78324397 | None:intergenic | 45.0% | |
| GCAATCAGAGCCTAAGAAAC+AGG | - | chr5.1:78324246-78324265 | MS.gene38098:intron | 45.0% | |
| GTCCACTGGGAAAAAGTAAC+TGG | - | chr5.1:78325380-78325399 | MS.gene38098:intron | 45.0% | |
| TCAGATCCAAAAGTCGGTGT+TGG | - | chr5.1:78326465-78326484 | MS.gene38098:CDS | 45.0% | |
| TCAGCGTTACAGTCGTTTCA+TGG | + | chr5.1:78325524-78325543 | None:intergenic | 45.0% | |
| TCATGCTGCTATGGTGAAGA+AGG | - | chr5.1:78326716-78326735 | MS.gene38098:CDS | 45.0% | |
| TCTGTAGTTAACAGAGGCTG+TGG | + | chr5.1:78325625-78325644 | None:intergenic | 45.0% | |
| TGAACAGAAGGCAAACTTGC+AGG | + | chr5.1:78323791-78323810 | None:intergenic | 45.0% | |
| ! | AATTGAAGTGCCTATTGCGG+TGG | + | chr5.1:78326511-78326530 | None:intergenic | 45.0% |
| ! | CCCAATTGAAGTGCCTATTG+CGG | + | chr5.1:78326514-78326533 | None:intergenic | 45.0% |
| ! | CTTCTAATATTGCCGGCTGT+TGG | - | chr5.1:78323914-78323933 | MS.gene38098:CDS | 45.0% |
| ! | GCCGGCAATATTAGAAGCAT+TGG | + | chr5.1:78323911-78323930 | None:intergenic | 45.0% |
| ! | TTTCGCAGGCTCTGATTGTT+CGG | + | chr5.1:78324407-78324426 | None:intergenic | 45.0% |
| !!! | TCTGAATCTGGCTTTTCCTG+TGG | + | chr5.1:78326537-78326556 | None:intergenic | 45.0% |
| ACAATCAGAGCCTGCGAAAC+AGG | - | chr5.1:78324408-78324427 | MS.gene38098:intron | 50.0% | |
| AGCTACACTGCACACTTGTC+CGG | - | chr5.1:78326411-78326430 | MS.gene38098:CDS | 50.0% | |
| AGTTTGCCTTCTGCGCAGAA+TGG | - | chr5.1:78323881-78323900 | MS.gene38098:CDS | 50.0% | |
| AGTTTGCCTTCTGCGCGTAA+TGG | - | chr5.1:78323968-78323987 | MS.gene38098:CDS | 50.0% | |
| CTGCTATGGTGAAGAAGGCA+GGG | - | chr5.1:78326721-78326740 | MS.gene38098:CDS | 50.0% | |
| GACAGCAGCAATAAGTGGGA+AGG | - | chr5.1:78325436-78325455 | MS.gene38098:intron | 50.0% | |
| GTAGTTAACAGAGGCTGTGG+CGG | + | chr5.1:78325622-78325641 | None:intergenic | 50.0% | |
| GTTGCCGAACTCAAGCGTAA+CGG | - | chr5.1:78326297-78326316 | MS.gene38098:CDS | 50.0% | |
| ! | AGTTGGCTTACTCGTCCACT+GGG | - | chr5.1:78325367-78325386 | MS.gene38098:intron | 50.0% |
| ! | GGCTCTGATTGTTCAGCTAC+AGG | + | chr5.1:78324496-78324515 | None:intergenic | 50.0% |
| ! | GGCTCTGATTGTTCTGCTAC+AGG | + | chr5.1:78324784-78324803 | None:intergenic | 50.0% |
| ! | TAGTTGGCTTACTCGTCCAC+TGG | - | chr5.1:78325366-78325385 | MS.gene38098:intron | 50.0% |
| ! | TGGGAGAAAGCATGCTGCTA+AGG | - | chr5.1:78324888-78324907 | MS.gene38098:intron | 50.0% |
| ACCTAGCTACCGCTACGTCA+TGG | - | chr5.1:78325580-78325599 | MS.gene38098:intron | 55.0% | |
| ACTACCACCACCACCGCAAT+AGG | - | chr5.1:78326498-78326517 | MS.gene38098:CDS | 55.0% | |
| AGGCACTTCAATTGGGCCAC+AGG | - | chr5.1:78326518-78326537 | MS.gene38098:CDS | 55.0% | |
| CAGGAACCATTACGCGCAGA+AGG | + | chr5.1:78323977-78323996 | None:intergenic | 55.0% | |
| CGCTTGAGTTCGGCAACAGA+TGG | + | chr5.1:78326294-78326313 | None:intergenic | 55.0% | |
| CTTCTGCGCGTAATGGTTCC+TGG | - | chr5.1:78323975-78323994 | MS.gene38098:CDS | 55.0% | |
| GCTCTGATTGCTCGCGTACA+GGG | + | chr5.1:78324237-78324256 | None:intergenic | 55.0% | |
| GCTGCTATGGTGAAGAAGGC+AGG | - | chr5.1:78326720-78326739 | MS.gene38098:CDS | 55.0% | |
| GGCATACCATTCTGCGCAGA+AGG | + | chr5.1:78323890-78323909 | None:intergenic | 55.0% | |
| GGCCAATTAACGCTTGACCG+TGG | + | chr5.1:78324216-78324235 | None:intergenic | 55.0% | |
| TGCGCAGAAGGCAAACTTGC+AGG | + | chr5.1:78323878-78323897 | None:intergenic | 55.0% | |
| TGGTGTGACGAACCAACAGC+CGG | + | chr5.1:78323929-78323948 | None:intergenic | 55.0% | |
| ! | ACTGTAACGCTGACTGCCAC+GGG | - | chr5.1:78325531-78325550 | MS.gene38098:intron | 55.0% |
| ! | GACTGTAACGCTGACTGCCA+CGG | - | chr5.1:78325530-78325549 | MS.gene38098:intron | 55.0% |
| ! | GGCTCTGATTGTTCGGCTAC+AGG | + | chr5.1:78324304-78324323 | None:intergenic | 55.0% |
| ! | TGAAGTGCCTATTGCGGTGG+TGG | + | chr5.1:78326508-78326527 | None:intergenic | 55.0% |
| !! | CCAAAAGTCGGTGTTGGCAG+CGG | - | chr5.1:78326471-78326490 | MS.gene38098:CDS | 55.0% |
| !! | TATTGCGGTGGTGGTGGTAG+TGG | + | chr5.1:78326499-78326518 | None:intergenic | 55.0% |
| CGCGCAGAAGGCAAACTTGC+AGG | + | chr5.1:78323965-78323984 | None:intergenic | 60.0% | |
| GCCATGACGTAGCGGTAGCT+AGG | + | chr5.1:78325584-78325603 | None:intergenic | 60.0% | |
| ! | AGTGCCTATTGCGGTGGTGG+TGG | + | chr5.1:78326505-78326524 | None:intergenic | 60.0% |
| ! | GGCTCTGATTGCTCGCGTAC+AGG | + | chr5.1:78324238-78324257 | None:intergenic | 60.0% |
| ! | GGCTCTGATTGTTCGGCGAC+AGG | + | chr5.1:78324400-78324419 | None:intergenic | 60.0% |
| ! | GGCTCTGATTGTTCGGCTGC+AGG | + | chr5.1:78324688-78324707 | None:intergenic | 60.0% |
| ! | TTGCAGGCGCTGCTGAAGTG+TGG | + | chr5.1:78323949-78323968 | None:intergenic | 60.0% |
| !!! | CCGCTGCCAACACCGACTTT+TGG | + | chr5.1:78326474-78326493 | None:intergenic | 60.0% |
| TTAGGGCAGCGTAGCGCCCG+TGG | + | chr5.1:78325550-78325569 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 78323737 | 78326758 | 78323737 | ID=MS.gene38098 |
| chr5.1 | mRNA | 78323737 | 78326758 | 78323737 | ID=MS.gene38098.t1;Parent=MS.gene38098 |
| chr5.1 | exon | 78325586 | 78326758 | 78325586 | ID=MS.gene38098.t1.exon1;Parent=MS.gene38098.t1 |
| chr5.1 | CDS | 78325586 | 78326758 | 78325586 | ID=cds.MS.gene38098.t1;Parent=MS.gene38098.t1 |
| chr5.1 | exon | 78323737 | 78324234 | 78323737 | ID=MS.gene38098.t1.exon2;Parent=MS.gene38098.t1 |
| chr5.1 | CDS | 78323737 | 78324234 | 78323737 | ID=cds.MS.gene38098.t1;Parent=MS.gene38098.t1 |
| Gene Sequence |
| Protein sequence |
