AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene38184

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38184.t1 MTR_1g019850 93.567 171 11 0 1 171 28 198 6.72e-110 331
MS.gene38184.t1 MTR_0734s0010 95.745 141 6 0 491 631 1 141 3.60e-92 283
MS.gene38184.t1 MTR_0853s0010 55.280 161 54 3 24 169 1 158 4.22e-50 172
MS.gene38184.t1 MTR_2g024230 76.000 100 23 1 1 99 47 146 1.90e-43 153
MS.gene38184.t1 MTR_6g051425 34.934 229 136 4 82 300 64 289 4.09e-38 144
MS.gene38184.t1 MTR_4g035820 26.421 299 192 9 6 277 27 324 2.31e-22 102
MS.gene38184.t1 MTR_0558s0020 24.903 257 163 5 47 273 40 296 1.30e-21 96.3
MS.gene38184.t1 MTR_3g450850 28.819 288 168 10 3 261 7 286 9.74e-20 91.7
MS.gene38184.t1 MTR_3g020080 47.000 100 32 2 315 410 2 84 1.16e-19 86.3
MS.gene38184.t1 MTR_8g446020 27.174 184 117 2 101 273 79 256 5.66e-19 87.4
MS.gene38184.t1 MTR_1g070355 25.322 233 159 5 48 267 79 309 1.03e-17 87.4
MS.gene38184.t1 MTR_5g076070 26.667 255 166 8 21 261 35 282 2.16e-16 80.5
MS.gene38184.t1 MTR_6g090505 25.258 194 140 2 101 289 54 247 5.06e-16 80.5
MS.gene38184.t1 MTR_6g048540 38.710 124 71 2 499 619 106 227 1.11e-15 77.4
MS.gene38184.t1 MTR_6g048540 52.542 59 28 0 38 96 23 81 5.44e-12 66.6
MS.gene38184.t1 MTR_7g446480 28.977 176 118 3 112 281 140 314 1.20e-15 79.0
MS.gene38184.t1 MTR_1g033820 53.571 56 26 0 32 87 16 71 3.37e-15 72.0
MS.gene38184.t1 MTR_7g446510 27.429 175 122 1 112 281 155 329 3.47e-15 77.8
MS.gene38184.t1 MTR_1g013060 26.106 226 144 6 25 234 12 230 4.99e-13 69.3
MS.gene38184.t1 MTR_1g083640 21.978 273 182 6 6 248 15 286 8.37e-13 69.7
MS.gene38184.t1 MTR_7g446520 24.590 244 155 7 44 275 89 315 3.04e-12 68.9
MS.gene38184.t1 MTR_8g466860 73.684 38 10 0 331 368 81 118 4.53e-12 63.9
MS.gene38184.t1 MTR_5g039760 25.926 189 113 5 45 226 12 180 2.40e-11 63.5
MS.gene38184.t1 MTR_8g465780 30.097 103 71 1 337 438 1 103 2.71e-11 63.2
MS.gene38184.t1 MTR_7g074790 30.058 173 85 6 43 201 10 160 5.35e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38184.t1 AT4G38170 32.280 443 221 10 210 581 21 455 1.27e-68 233
MS.gene38184.t1 AT1G76320 28.131 551 314 11 47 523 1 543 1.58e-67 233
MS.gene38184.t1 AT1G76320 28.131 551 314 11 47 523 1 543 2.63e-67 234
MS.gene38184.t1 AT1G76320 28.131 551 314 11 47 523 1 543 2.63e-67 234
MS.gene38184.t1 AT1G76320 28.131 551 314 11 47 523 1 543 2.91e-67 234
MS.gene38184.t1 AT4G38180 37.209 301 172 5 29 314 59 357 1.19e-59 214
MS.gene38184.t1 AT4G38180 35.047 214 139 0 316 529 426 639 2.60e-46 176
MS.gene38184.t1 AT1G10240 26.227 591 338 16 20 521 23 604 2.53e-57 206
MS.gene38184.t1 AT1G10240 26.227 591 338 16 20 521 23 604 2.53e-57 206
MS.gene38184.t1 AT2G27110 34.462 325 175 11 1 311 1 301 3.87e-45 172
MS.gene38184.t1 AT2G27110 29.965 287 192 4 313 598 370 648 5.60e-42 163
MS.gene38184.t1 AT2G27110 34.462 325 175 11 1 311 1 301 3.87e-45 172
MS.gene38184.t1 AT2G27110 29.965 287 192 4 313 598 370 648 5.60e-42 163
MS.gene38184.t1 AT2G27110 29.965 287 192 4 313 598 225 503 2.26e-42 163
MS.gene38184.t1 AT2G27110 55.660 106 47 0 206 311 51 156 9.27e-36 144
MS.gene38184.t1 AT3G22170 32.432 333 180 10 1 312 32 340 4.24e-41 160
MS.gene38184.t1 AT3G22170 32.524 206 138 1 318 523 413 617 2.62e-34 140
MS.gene38184.t1 AT3G22170 32.432 333 180 10 1 312 32 340 4.24e-41 160
MS.gene38184.t1 AT3G22170 32.524 206 138 1 318 523 413 617 2.62e-34 140
MS.gene38184.t1 AT4G15090 30.449 312 202 5 303 612 392 690 4.84e-41 160
MS.gene38184.t1 AT4G15090 32.414 290 181 5 36 312 44 331 8.23e-39 154
MS.gene38184.t1 AT4G15090 30.449 312 202 5 303 612 392 690 4.84e-41 160
MS.gene38184.t1 AT4G15090 32.414 290 181 5 36 312 44 331 8.23e-39 154
MS.gene38184.t1 AT4G15090 30.449 312 202 5 303 612 392 690 4.84e-41 160
MS.gene38184.t1 AT4G15090 32.414 290 181 5 36 312 44 331 8.23e-39 154
MS.gene38184.t1 AT4G15090 30.449 312 202 5 303 612 392 690 4.84e-41 160
MS.gene38184.t1 AT4G15090 32.414 290 181 5 36 312 44 331 8.23e-39 154
MS.gene38184.t1 AT4G15090 30.449 312 202 5 303 612 392 690 4.84e-41 160
MS.gene38184.t1 AT4G15090 32.414 290 181 5 36 312 44 331 8.23e-39 154
MS.gene38184.t1 AT1G80010 31.507 292 167 7 43 311 95 376 2.26e-36 145
MS.gene38184.t1 AT1G80010 28.507 221 148 5 313 525 444 662 2.69e-21 99.4
MS.gene38184.t1 AT1G52520 28.315 279 179 6 43 311 85 352 9.83e-36 144
MS.gene38184.t1 AT1G52520 28.521 284 192 5 316 590 422 703 8.29e-27 116
MS.gene38184.t1 AT2G32250 28.114 281 194 3 306 586 339 611 5.77e-34 139
MS.gene38184.t1 AT2G32250 32.099 324 159 11 1 312 1 275 8.76e-32 132
MS.gene38184.t1 AT2G32250 28.114 281 194 3 306 586 339 611 5.77e-34 139
MS.gene38184.t1 AT2G32250 32.099 324 159 11 1 312 1 275 8.76e-32 132
MS.gene38184.t1 AT2G32250 28.114 281 194 3 306 586 298 570 5.87e-34 139
MS.gene38184.t1 AT2G32250 32.967 273 137 8 47 312 1 234 3.76e-31 130
MS.gene38184.t1 AT2G32250 28.114 281 194 3 306 586 339 611 6.34e-34 139
MS.gene38184.t1 AT2G32250 32.099 324 159 11 1 312 1 275 1.01e-31 132
MS.gene38184.t1 AT2G32250 28.114 281 194 3 306 586 339 611 6.34e-34 139
MS.gene38184.t1 AT2G32250 32.099 324 159 11 1 312 1 275 1.01e-31 132
MS.gene38184.t1 AT2G32250 28.114 281 194 3 306 586 339 611 6.34e-34 139
MS.gene38184.t1 AT2G32250 32.099 324 159 11 1 312 1 275 1.01e-31 132
MS.gene38184.t1 AT2G32250 28.114 281 194 3 306 586 298 570 6.46e-34 138
MS.gene38184.t1 AT2G32250 32.967 273 137 8 47 312 1 234 4.40e-31 130
MS.gene38184.t1 AT2G32250 28.114 281 194 3 306 586 339 611 7.24e-34 138
MS.gene38184.t1 AT2G32250 32.099 324 159 11 1 312 1 275 8.84e-32 132
MS.gene38184.t1 AT3G06250 30.038 263 179 2 319 581 502 759 1.06e-33 138
MS.gene38184.t1 AT3G06250 29.758 289 160 6 30 311 178 430 1.97e-33 137
MS.gene38184.t1 AT3G06250 30.038 263 179 2 319 581 502 759 1.06e-33 138
MS.gene38184.t1 AT3G06250 29.758 289 160 6 30 311 178 430 1.97e-33 137
MS.gene38184.t1 AT3G06250 30.038 263 179 2 319 581 502 759 1.06e-33 138
MS.gene38184.t1 AT3G06250 29.758 289 160 6 30 311 178 430 1.97e-33 137
MS.gene38184.t1 AT4G19990 30.721 319 160 8 16 311 12 292 9.30e-33 135
MS.gene38184.t1 AT4G19990 31.111 225 154 1 316 539 364 588 7.34e-32 132
MS.gene38184.t1 AT4G19990 32.753 287 136 7 48 311 26 278 1.06e-32 134
MS.gene38184.t1 AT4G19990 31.111 225 154 1 316 539 350 574 5.70e-32 132
MS.gene38184.t1 AT4G19990 32.753 287 136 7 48 311 26 278 1.06e-32 134
MS.gene38184.t1 AT4G19990 31.111 225 154 1 316 539 350 574 5.70e-32 132
MS.gene38184.t1 AT5G18960 29.658 263 180 2 319 581 526 783 1.14e-32 134
MS.gene38184.t1 AT5G18960 31.408 277 149 8 43 311 211 454 1.63e-32 134
MS.gene38184.t1 AT5G18960 29.658 263 180 2 319 581 526 783 1.14e-32 134
MS.gene38184.t1 AT5G18960 31.408 277 149 8 43 311 211 454 1.63e-32 134
MS.gene38184.t1 AT4G19990 32.753 287 136 7 48 311 26 278 1.45e-32 134
MS.gene38184.t1 AT4G19990 31.111 225 154 1 316 539 350 574 6.86e-32 132
MS.gene38184.t1 AT4G19990 32.753 287 136 7 48 311 26 278 1.59e-32 134
MS.gene38184.t1 AT4G19990 31.111 225 154 1 316 539 350 574 5.62e-32 132
MS.gene38184.t1 AT4G19990 32.753 287 136 7 48 311 26 278 1.59e-32 134
MS.gene38184.t1 AT4G19990 31.111 225 154 1 316 539 350 574 5.62e-32 132
MS.gene38184.t1 AT4G19990 31.556 225 153 1 316 539 293 517 4.18e-32 132
MS.gene38184.t1 AT4G19990 35.185 216 103 4 99 311 40 221 3.74e-29 123
MS.gene38184.t1 AT5G28530 25.122 410 260 12 43 427 55 442 2.93e-29 124
MS.gene38184.t1 AT5G28530 23.394 218 157 2 316 533 419 626 6.54e-14 75.5
MS.gene38184.t1 AT5G28530 25.122 410 260 12 43 427 55 442 2.93e-29 124
MS.gene38184.t1 AT5G28530 23.394 218 157 2 316 533 419 626 6.54e-14 75.5
MS.gene38184.t1 AT5G28530 25.122 410 260 12 43 427 55 442 3.05e-29 124
MS.gene38184.t1 AT5G28530 22.936 218 162 2 316 533 419 630 1.09e-13 74.7
MS.gene38184.t1 AT5G28530 22.533 537 342 15 43 533 55 563 2.17e-25 111
MS.gene38184.t1 AT5G28530 22.346 537 347 15 43 533 55 567 4.66e-25 110

Find 91 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGTTGCTACAATGTTTC+AGG 0.177913 5.3:+79017984 MS.gene38184:CDS
AACTCCAAATCCTTCTTTCT+TGG 0.222792 5.3:-79017656 None:intergenic
TATTTGTCCTATTGTTGATA+TGG 0.229024 5.3:+79017588 MS.gene38184:CDS
AAGGAGAATGAATGGCTTAA+AGG 0.244725 5.3:+79018655 MS.gene38184:CDS
ATAGAATGATAAATTTCTTC+TGG 0.268818 5.3:+79018169 MS.gene38184:CDS
TTATAAAGATTATTCAATTT+AGG 0.268994 5.3:+79018983 MS.gene38184:CDS
AAGCAGGGAAGAGAAGTAAA+TGG 0.304863 5.3:+79017821 MS.gene38184:CDS
CGCAGATAGGCCACACTCTT+AGG 0.314469 5.3:-79017889 None:intergenic
GGGAGTGGATCTCTAATAAT+TGG 0.318088 5.3:-79019516 None:intergenic
AATTTATGGGATTGCTATGT+AGG 0.326606 5.3:+79019136 MS.gene38184:CDS
TAAGCTGATATCATCTGATT+TGG 0.331906 5.3:+79019374 MS.gene38184:CDS
TCAATCAAAGAGACTCAAAA+TGG 0.364695 5.3:+79019566 MS.gene38184:CDS
TTTGCCAAGAAAGAAGGATT+TGG 0.365412 5.3:+79017652 MS.gene38184:CDS
AGTTAAATTTGACAAGGAAA+TGG 0.386476 5.3:+79018822 MS.gene38184:CDS
AGAAGAATGGGAACGTATAA+TGG 0.393483 5.3:+79018618 MS.gene38184:CDS
TTCTTCTGAAATTTCTAAGA+TGG 0.394077 5.3:-79018044 None:intergenic
ATTCATAGTTTGTGTGGATC+TGG 0.400009 5.3:+79019077 MS.gene38184:CDS
AATGGTTGATTATAATTTGA+AGG 0.401452 5.3:+79018636 MS.gene38184:CDS
TTCTGCCTTTAGTTTGTGAT+GGG 0.402300 5.3:-79019536 None:intergenic
TAGAATACGTTGAAGAAGAA+TGG 0.417398 5.3:+79018605 MS.gene38184:intron
CGCTTTAAAATATACATGTC+TGG 0.419734 5.3:-79019201 None:intergenic
TTTCTGCCTTTAGTTTGTGA+TGG 0.422683 5.3:-79019537 None:intergenic
AAATGGCATATCATACTTGT+TGG 0.423697 5.3:-79018262 None:intergenic
AGGAGAATGAATGGCTTAAA+GGG 0.425174 5.3:+79018656 MS.gene38184:CDS
TCAAATTCCATATCAACAAT+AGG 0.427064 5.3:-79017595 None:intergenic
ATAATTTGAAGGAGAATGAA+TGG 0.429066 5.3:+79018647 MS.gene38184:CDS
TAGAATGATAAATTTCTTCT+GGG 0.433286 5.3:+79018170 MS.gene38184:CDS
GGTGGATGGAAGAGCAAGAT+TGG 0.436268 5.3:+79018191 MS.gene38184:CDS
AAAGTGCTTCTGTTGAAAAC+AGG 0.437656 5.3:-79018706 None:intergenic
GAAGGTACACATATAGTAAA+GGG 0.439216 5.3:+79017727 MS.gene38184:CDS
TAAAGATTATTCAATTTAGG+AGG 0.447983 5.3:+79018986 MS.gene38184:CDS
TCACTTACTGTTTCAAAAGC+AGG 0.452498 5.3:+79017805 MS.gene38184:CDS
ATAAATTTCTTCTGGGTGGA+TGG 0.455401 5.3:+79018177 MS.gene38184:CDS
ATAAACAATGTTCATAATCA+TGG 0.455589 5.3:+79017856 MS.gene38184:CDS
ACATCGTTTGCCAAGAAAGA+AGG 0.463881 5.3:+79017646 MS.gene38184:CDS
ATAGGACAAATATTAGCTTC+AGG 0.470032 5.3:-79017577 None:intergenic
GTTGAGAAGTTTGATGAAGA+AGG 0.472036 5.3:+79017949 MS.gene38184:CDS
GGACCAGAGTCTTCCTCTAC+AGG 0.475137 5.3:+79019267 MS.gene38184:CDS
AGAATACGTTGAAGAAGAAT+GGG 0.485870 5.3:+79018606 MS.gene38184:intron
AATCCGGTGAAGGGTGCAAA+TGG 0.486093 5.3:-79018279 None:intergenic
GCTGATATCATCTGATTTGG+AGG 0.486826 5.3:+79019377 MS.gene38184:CDS
AGGGTCTCAGTATAGATATA+AGG 0.487060 5.3:+79019026 MS.gene38184:CDS
AAGGATTTGGAGTTCGTGTT+CGG 0.488165 5.3:+79017665 MS.gene38184:CDS
CCTTTAGTTTGTGATGGGAG+TGG 0.488360 5.3:-79019531 None:intergenic
AGCAGGGAAGAGAAGTAAAT+GGG 0.489503 5.3:+79017822 MS.gene38184:CDS
TGAAGGTACACATATAGTAA+AGG 0.494494 5.3:+79017726 MS.gene38184:CDS
GGTGCTGTGTTTATTGAAGA+TGG 0.495192 5.3:+79019246 MS.gene38184:CDS
AATATTAGCTTCAGGCGACT+TGG 0.496239 5.3:-79017569 None:intergenic
ATGCCATTTGCACCCTTCAC+CGG 0.499873 5.3:+79018276 MS.gene38184:CDS
GATGAAGAAGGAGTACCTAC+AGG 0.503271 5.3:+79017961 MS.gene38184:CDS
AAAGATTATTCAATTTAGGA+GGG 0.507177 5.3:+79018987 MS.gene38184:CDS
GTAAAGGGTGAAAATGAAGA+AGG 0.507431 5.3:+79017742 MS.gene38184:CDS
TTGAAAATGATGATTCAATC+CGG 0.518170 5.3:-79018295 None:intergenic
TTTCTTATGAGACCGCAGAT+AGG 0.520274 5.3:-79017902 None:intergenic
AAAGTTGCTACAATGTTTCA+GGG 0.533512 5.3:+79017985 MS.gene38184:CDS
TGCTTTACAATCAGTTCTTG+AGG 0.537334 5.3:-79017782 None:intergenic
TGTACGATATAAGAAAATCA+TGG 0.540635 5.3:+79018680 MS.gene38184:CDS
TAGAACATGGCTAGACGCAA+TGG 0.540817 5.3:+79018380 MS.gene38184:CDS
CACTTACTGTTTCAAAAGCA+GGG 0.542698 5.3:+79017806 MS.gene38184:CDS
AGAAGAAGAAATCTTGATGT+GGG 0.546130 5.3:+79018060 MS.gene38184:CDS
ATGATGATTCAATCCGGTGA+AGG 0.546228 5.3:-79018289 None:intergenic
ATTGCTATGTAGGCATATCT+TGG 0.547174 5.3:+79019146 MS.gene38184:CDS
TAAAGGGTGAAAATGAAGAA+GGG 0.554329 5.3:+79017743 MS.gene38184:CDS
CAGAAGAAGAAATCTTGATG+TGG 0.556138 5.3:+79018059 MS.gene38184:CDS
ATTGGTTCTGAAGACTCACT+TGG 0.558105 5.3:-79019498 None:intergenic
CAATGTTCATAATCATGGAA+TGG 0.563943 5.3:+79017861 MS.gene38184:CDS
CCACTCCCATCACAAACTAA+AGG 0.565112 5.3:+79019531 MS.gene38184:CDS
CCTTTGTTTAGTGTTCATGC+CGG 0.565633 5.3:-79018734 None:intergenic
AGAACATGGCTAGACGCAAT+GGG 0.566082 5.3:+79018381 MS.gene38184:CDS
ATTGTAGCAACTTTCCCTGT+AGG 0.569258 5.3:-79017976 None:intergenic
AGTTGATGAGTTTCCTGTAG+AGG 0.572088 5.3:-79019280 None:intergenic
ACACATCATCAACTATCTCA+TGG 0.575355 5.3:-79017516 None:intergenic
TTGAGTGGTTGTTTAGAACA+TGG 0.580129 5.3:+79018367 MS.gene38184:CDS
TCAAAGAGACTCAAAATGGA+AGG 0.586321 5.3:+79019570 MS.gene38184:CDS
AATGATAAATTTCTTCTGGG+TGG 0.588712 5.3:+79018173 MS.gene38184:CDS
AGACACATTCATAGTTTGTG+TGG 0.589137 5.3:+79019071 MS.gene38184:CDS
TGATGATTCAATCCGGTGAA+GGG 0.589411 5.3:-79018288 None:intergenic
ATGTTTGTATGCGCTAATGA+AGG 0.600535 5.3:+79017709 MS.gene38184:CDS
AGACTCAGAAGACGTTTGAG+TGG 0.616471 5.3:+79018352 MS.gene38184:CDS
TTTCCTGTAGAGGAAGACTC+TGG 0.627574 5.3:-79019270 None:intergenic
ATGAAGAAGGAGTACCTACA+GGG 0.636491 5.3:+79017962 MS.gene38184:CDS
CTTCATCAAACTTCTCAACG+AGG 0.637235 5.3:-79017945 None:intergenic
CTAAGAGTGTGGCCTATCTG+CGG 0.648365 5.3:+79017890 MS.gene38184:CDS
GTACATGGATAATGAGTGTG+TGG 0.666454 5.3:+79017465 None:intergenic
TTGTGTGGATCTGGAGACAA+AGG 0.667341 5.3:+79019086 MS.gene38184:CDS
TGGACAAAGGATGCTAACAA+AGG 0.673725 5.3:+79019225 MS.gene38184:CDS
AATGGTTAGTCCTAAGAGTG+TGG 0.677899 5.3:+79017879 MS.gene38184:CDS
GTCTTCTAAACACTCAACAG+TGG 0.678815 5.3:-79017494 None:intergenic
TATGGAATTTGACTCCATTG+CGG 0.693460 5.3:+79017606 MS.gene38184:CDS
CCGGCATGAACACTAAACAA+AGG 0.702508 5.3:+79018734 MS.gene38184:CDS
ACATGGCTAGACGCAATGGG+TGG 0.716265 5.3:+79018384 MS.gene38184:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAAAGATTATTCAATTT+AGG + chr5.3:79018983-79019002 MS.gene38184:CDS 10.0%
!! TGTATTGCATAAAAAAAATT+GGG - chr5.3:79018135-79018154 None:intergenic 15.0%
!! TTGTATTGCATAAAAAAAAT+TGG - chr5.3:79018136-79018155 None:intergenic 15.0%
!!! ATATATACAAGAAACATTTT+TGG + chr5.3:79018943-79018962 MS.gene38184:CDS 15.0%
!!! TATATACAAGAAACATTTTT+GGG + chr5.3:79018944-79018963 MS.gene38184:CDS 15.0%
!! AAAGATTATTCAATTTAGGA+GGG + chr5.3:79018987-79019006 MS.gene38184:CDS 20.0%
!! AATGGTTGATTATAATTTGA+AGG + chr5.3:79018636-79018655 MS.gene38184:CDS 20.0%
!! ATAAACAATGTTCATAATCA+TGG + chr5.3:79017856-79017875 MS.gene38184:CDS 20.0%
!! ATAGAATGATAAATTTCTTC+TGG + chr5.3:79018169-79018188 MS.gene38184:CDS 20.0%
!! TAAAGATTATTCAATTTAGG+AGG + chr5.3:79018986-79019005 MS.gene38184:CDS 20.0%
!! TAGAATGATAAATTTCTTCT+GGG + chr5.3:79018170-79018189 MS.gene38184:CDS 20.0%
!!! CATTTTCAATCTATCTTATT+TGG + chr5.3:79018309-79018328 MS.gene38184:CDS 20.0%
!!! TTTTGTAGTTAAATTTGACA+AGG + chr5.3:79018816-79018835 MS.gene38184:CDS 20.0%
! AATAATAACAGATCAAGACT+TGG + chr5.3:79018422-79018441 MS.gene38184:intron 25.0%
! AGTTAAATTTGACAAGGAAA+TGG + chr5.3:79018822-79018841 MS.gene38184:CDS 25.0%
! AGTTGTTAAGTCAAAAATTG+AGG + chr5.3:79018906-79018925 MS.gene38184:CDS 25.0%
! ATAATTTGAAGGAGAATGAA+TGG + chr5.3:79018647-79018666 MS.gene38184:CDS 25.0%
! TATTTGTCCTATTGTTGATA+TGG + chr5.3:79017588-79017607 MS.gene38184:CDS 25.0%
! TCAAATTCCATATCAACAAT+AGG - chr5.3:79017598-79017617 None:intergenic 25.0%
! TGTACGATATAAGAAAATCA+TGG + chr5.3:79018680-79018699 MS.gene38184:CDS 25.0%
! TTGAAAATGATGATTCAATC+CGG - chr5.3:79018298-79018317 None:intergenic 25.0%
!! TGAATTTTTGTGGTATATGT+GGG - chr5.3:79018539-79018558 None:intergenic 25.0%
!! TTGAATTTTTGTGGTATATG+TGG - chr5.3:79018540-79018559 None:intergenic 25.0%
!!! AAGATAATGCTTTTTCTAGT+CGG + chr5.3:79018010-79018029 MS.gene38184:CDS 25.0%
!!! ACATGTATATTTTAAAGCGT+TGG + chr5.3:79019205-79019224 MS.gene38184:CDS 25.0%
!!! AGATTGGCATATCAATTTTT+TGG + chr5.3:79018207-79018226 MS.gene38184:CDS 25.0%
!!! ATACAAAAAAGCGTTGATAA+TGG + chr5.3:79019404-79019423 MS.gene38184:CDS 25.0%
!!! TTCTTCTGAAATTTCTAAGA+TGG - chr5.3:79018047-79018066 None:intergenic 25.0%
AAAGTTGCTACAATGTTTCA+GGG + chr5.3:79017985-79018004 MS.gene38184:CDS 30.0%
AAATGGCATATCATACTTGT+TGG - chr5.3:79018265-79018284 None:intergenic 30.0%
AATGATAAATTTCTTCTGGG+TGG + chr5.3:79018173-79018192 MS.gene38184:CDS 30.0%
AATTTATGGGATTGCTATGT+AGG + chr5.3:79019136-79019155 MS.gene38184:CDS 30.0%
AGAAGAAGAAATCTTGATGT+GGG + chr5.3:79018060-79018079 MS.gene38184:CDS 30.0%
AGAATACGTTGAAGAAGAAT+GGG + chr5.3:79018606-79018625 MS.gene38184:intron 30.0%
AGGGAAAAACTTGAAAAAGA+AGG + chr5.3:79019006-79019025 MS.gene38184:CDS 30.0%
ATCCCATAAATTGAAAAAGC+TGG - chr5.3:79019128-79019147 None:intergenic 30.0%
CAATGTTCATAATCATGGAA+TGG + chr5.3:79017861-79017880 MS.gene38184:CDS 30.0%
CTATGAAAAACAAAGAAGAG+AGG + chr5.3:79018852-79018871 MS.gene38184:CDS 30.0%
GGGAAAAACTTGAAAAAGAA+GGG + chr5.3:79019007-79019026 MS.gene38184:CDS 30.0%
TAAAGGGTGAAAATGAAGAA+GGG + chr5.3:79017743-79017762 MS.gene38184:CDS 30.0%
TAAGCTGATATCATCTGATT+TGG + chr5.3:79019374-79019393 MS.gene38184:CDS 30.0%
TAGAATACGTTGAAGAAGAA+TGG + chr5.3:79018605-79018624 MS.gene38184:intron 30.0%
TCAATCAAAGAGACTCAAAA+TGG + chr5.3:79019566-79019585 MS.gene38184:CDS 30.0%
TCTTCAACGTATTCTATAGA+TGG - chr5.3:79018601-79018620 None:intergenic 30.0%
TGATCTGTTATTATTGACAC+TGG - chr5.3:79018417-79018436 None:intergenic 30.0%
TTATGTGCCATAAACATAAC+CGG - chr5.3:79018491-79018510 None:intergenic 30.0%
! ATAGGACAAATATTAGCTTC+AGG - chr5.3:79017580-79017599 None:intergenic 30.0%
! GAAGGTACACATATAGTAAA+GGG + chr5.3:79017727-79017746 MS.gene38184:CDS 30.0%
! GACTTGGAATTTTCTGAATT+TGG - chr5.3:79017556-79017575 None:intergenic 30.0%
! GCTTGAAAGTTGAATTTTTG+TGG - chr5.3:79018549-79018568 None:intergenic 30.0%
! TGAAGGTACACATATAGTAA+AGG + chr5.3:79017726-79017745 MS.gene38184:CDS 30.0%
!! AGATTTTGACAACTTGCATA+TGG - chr5.3:79019465-79019484 None:intergenic 30.0%
!! CGCTTTAAAATATACATGTC+TGG - chr5.3:79019204-79019223 None:intergenic 30.0%
!!! AGATAATGCTTTTTCTAGTC+GGG + chr5.3:79018011-79018030 MS.gene38184:CDS 30.0%
!!! TATTTTAAAGCGTTGGACAA+AGG + chr5.3:79019212-79019231 MS.gene38184:CDS 30.0%
!!! TGCCAGCTTTTTCAATTTAT+GGG + chr5.3:79019123-79019142 MS.gene38184:CDS 30.0%
AACTCCAAATCCTTCTTTCT+TGG - chr5.3:79017659-79017678 None:intergenic 35.0%
AAGGAGAATGAATGGCTTAA+AGG + chr5.3:79018655-79018674 MS.gene38184:CDS 35.0%
ACACATCATCAACTATCTCA+TGG - chr5.3:79017519-79017538 None:intergenic 35.0%
AGAAGAATGGGAACGTATAA+TGG + chr5.3:79018618-79018637 MS.gene38184:CDS 35.0%
AGGAGAATGAATGGCTTAAA+GGG + chr5.3:79018656-79018675 MS.gene38184:CDS 35.0%
AGGGTCTCAGTATAGATATA+AGG + chr5.3:79019026-79019045 MS.gene38184:CDS 35.0%
ATAAATTTCTTCTGGGTGGA+TGG + chr5.3:79018177-79018196 MS.gene38184:CDS 35.0%
ATGTTTGTATGCGCTAATGA+AGG + chr5.3:79017709-79017728 MS.gene38184:CDS 35.0%
ATTGCTATGTAGGCATATCT+TGG + chr5.3:79019146-79019165 MS.gene38184:CDS 35.0%
CACTTACTGTTTCAAAAGCA+GGG + chr5.3:79017806-79017825 MS.gene38184:CDS 35.0%
CAGAAGAAGAAATCTTGATG+TGG + chr5.3:79018059-79018078 MS.gene38184:CDS 35.0%
GAAAGTTGCTACAATGTTTC+AGG + chr5.3:79017984-79018003 MS.gene38184:CDS 35.0%
GTAAAGGGTGAAAATGAAGA+AGG + chr5.3:79017742-79017761 MS.gene38184:CDS 35.0%
GTTGAGAAGTTTGATGAAGA+AGG + chr5.3:79017949-79017968 MS.gene38184:CDS 35.0%
TATGGAATTTGACTCCATTG+CGG + chr5.3:79017606-79017625 MS.gene38184:CDS 35.0%
TCAAAGAGACTCAAAATGGA+AGG + chr5.3:79019570-79019589 MS.gene38184:CDS 35.0%
TCACTTACTGTTTCAAAAGC+AGG + chr5.3:79017805-79017824 MS.gene38184:CDS 35.0%
TGCTTTACAATCAGTTCTTG+AGG - chr5.3:79017785-79017804 None:intergenic 35.0%
TTTGCCAAGAAAGAAGGATT+TGG + chr5.3:79017652-79017671 MS.gene38184:CDS 35.0%
! AAAGTGCTTCTGTTGAAAAC+AGG - chr5.3:79018709-79018728 None:intergenic 35.0%
! AGACACATTCATAGTTTGTG+TGG + chr5.3:79019071-79019090 MS.gene38184:CDS 35.0%
! ATTCATAGTTTGTGTGGATC+TGG + chr5.3:79019077-79019096 MS.gene38184:CDS 35.0%
! GAAGAGAGGATTTTGAATCA+AGG + chr5.3:79018866-79018885 MS.gene38184:CDS 35.0%
! GAATTCTTTTACATCCGCAA+TGG - chr5.3:79017623-79017642 None:intergenic 35.0%
! TTGAGTGGTTGTTTAGAACA+TGG + chr5.3:79018367-79018386 MS.gene38184:CDS 35.0%
! TTTTGACAACTTGCATATGG+AGG - chr5.3:79019462-79019481 None:intergenic 35.0%
!! TTCTGCCTTTAGTTTGTGAT+GGG - chr5.3:79019539-79019558 None:intergenic 35.0%
!! TTTCTGCCTTTAGTTTGTGA+TGG - chr5.3:79019540-79019559 None:intergenic 35.0%
!!! AACAGAAGCACTTTTTTTGC+CGG + chr5.3:79018715-79018734 MS.gene38184:CDS 35.0%
!!! CTGCCAGCTTTTTCAATTTA+TGG + chr5.3:79019122-79019141 MS.gene38184:CDS 35.0%
AAGCAGGGAAGAGAAGTAAA+TGG + chr5.3:79017821-79017840 MS.gene38184:CDS 40.0%
ACATCGTTTGCCAAGAAAGA+AGG + chr5.3:79017646-79017665 MS.gene38184:CDS 40.0%
ACGAGTATGTGGGAAAACAT+TGG - chr5.3:79018466-79018485 None:intergenic 40.0%
AGCAGGGAAGAGAAGTAAAT+GGG + chr5.3:79017822-79017841 MS.gene38184:CDS 40.0%
ATGATGATTCAATCCGGTGA+AGG - chr5.3:79018292-79018311 None:intergenic 40.0%
ATTGTAGCAACTTTCCCTGT+AGG - chr5.3:79017979-79017998 None:intergenic 40.0%
CTTCATCAAACTTCTCAACG+AGG - chr5.3:79017948-79017967 None:intergenic 40.0%
GGGAGTGGATCTCTAATAAT+TGG - chr5.3:79019519-79019538 None:intergenic 40.0%
GTCTTCTAAACACTCAACAG+TGG - chr5.3:79017497-79017516 None:intergenic 40.0%
TGATGATTCAATCCGGTGAA+GGG - chr5.3:79018291-79018310 None:intergenic 40.0%
TGGACAAAGGATGCTAACAA+AGG + chr5.3:79019225-79019244 MS.gene38184:CDS 40.0%
TTTCTTATGAGACCGCAGAT+AGG - chr5.3:79017905-79017924 None:intergenic 40.0%
! AAGGATTTGGAGTTCGTGTT+CGG + chr5.3:79017665-79017684 MS.gene38184:CDS 40.0%
! AATATTAGCTTCAGGCGACT+TGG - chr5.3:79017572-79017591 None:intergenic 40.0%
! AATGGTTAGTCCTAAGAGTG+TGG + chr5.3:79017879-79017898 MS.gene38184:CDS 40.0%
! ATGTGGGAAAACATTGGCTA+TGG - chr5.3:79018460-79018479 None:intergenic 40.0%
! CCTTTGTTTAGTGTTCATGC+CGG - chr5.3:79018737-79018756 None:intergenic 40.0%
! GGTGCTGTGTTTATTGAAGA+TGG + chr5.3:79019246-79019265 MS.gene38184:CDS 40.0%
! TCAGATTTTGCTGCAAGATC+AGG - chr5.3:79019345-79019364 None:intergenic 40.0%
!! AGTTGATGAGTTTCCTGTAG+AGG - chr5.3:79019283-79019302 None:intergenic 40.0%
!! ATGAAGAAGGAGTACCTACA+GGG + chr5.3:79017962-79017981 MS.gene38184:CDS 40.0%
!! ATTGGTTCTGAAGACTCACT+TGG - chr5.3:79019501-79019520 None:intergenic 40.0%
!! GCTGATATCATCTGATTTGG+AGG + chr5.3:79019377-79019396 MS.gene38184:CDS 40.0%
AGAACATGGCTAGACGCAAT+GGG + chr5.3:79018381-79018400 MS.gene38184:CDS 45.0%
AGACTCAGAAGACGTTTGAG+TGG + chr5.3:79018352-79018371 MS.gene38184:CDS 45.0%
ATAACCGGTGACGAGTATGT+GGG - chr5.3:79018476-79018495 None:intergenic 45.0%
CCACTCCCATCACAAACTAA+AGG + chr5.3:79019531-79019550 MS.gene38184:CDS 45.0%
CCGGCATGAACACTAAACAA+AGG + chr5.3:79018734-79018753 MS.gene38184:CDS 45.0%
TAGAACATGGCTAGACGCAA+TGG + chr5.3:79018380-79018399 MS.gene38184:CDS 45.0%
TTGTGTGGATCTGGAGACAA+AGG + chr5.3:79019086-79019105 MS.gene38184:CDS 45.0%
TTTCCTGTAGAGGAAGACTC+TGG - chr5.3:79019273-79019292 None:intergenic 45.0%
! CTCGTCACCGGTTATGTTTA+TGG + chr5.3:79018481-79018500 MS.gene38184:intron 45.0%
! TTTTCCCACATACTCGTCAC+CGG + chr5.3:79018469-79018488 MS.gene38184:intron 45.0%
!! CCTTTAGTTTGTGATGGGAG+TGG - chr5.3:79019534-79019553 None:intergenic 45.0%
!! CTTTTTCTAGTCGGGATTGC+TGG + chr5.3:79018019-79018038 MS.gene38184:CDS 45.0%
!! GATGAAGAAGGAGTACCTAC+AGG + chr5.3:79017961-79017980 MS.gene38184:CDS 45.0%
CATAACCGGTGACGAGTATG+TGG - chr5.3:79018477-79018496 None:intergenic 50.0%
GGTGGATGGAAGAGCAAGAT+TGG + chr5.3:79018191-79018210 MS.gene38184:CDS 50.0%
! AATCCGGTGAAGGGTGCAAA+TGG - chr5.3:79018282-79018301 None:intergenic 50.0%
! ATGCCATTTGCACCCTTCAC+CGG + chr5.3:79018276-79018295 MS.gene38184:CDS 50.0%
! CTAAGAGTGTGGCCTATCTG+CGG + chr5.3:79017890-79017909 MS.gene38184:CDS 50.0%
ACATGGCTAGACGCAATGGG+TGG + chr5.3:79018384-79018403 MS.gene38184:CDS 55.0%
CGCAGATAGGCCACACTCTT+AGG - chr5.3:79017892-79017911 None:intergenic 55.0%
GGACCAGAGTCTTCCTCTAC+AGG + chr5.3:79019267-79019286 MS.gene38184:CDS 55.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 79017469 79019608 79017469 ID=MS.gene38184
chr5.3 mRNA 79017469 79019608 79017469 ID=MS.gene38184.t1;Parent=MS.gene38184
chr5.3 exon 79017469 79018405 79017469 ID=MS.gene38184.t1.exon1;Parent=MS.gene38184.t1
chr5.3 CDS 79017469 79018405 79017469 ID=cds.MS.gene38184.t1;Parent=MS.gene38184.t1
chr5.3 exon 79018608 79019608 79018608 ID=MS.gene38184.t1.exon2;Parent=MS.gene38184.t1
chr5.3 CDS 79018608 79019608 79018608 ID=cds.MS.gene38184.t1;Parent=MS.gene38184.t1
Gene Sequence

>MS.gene38184

ATGGATAATGAGTGTGTGGAAAATTCCACTGTTGAGTGTTTAGAAGACCATGAGATAGTTGATGATGTGTGTAATGATTTAGAACCAAATTCAGAAAATTCCAAGTCGCCTGAAGCTAATATTTGTCCTATTGTTGATATGGAATTTGACTCCATTGCGGATGTAAAAGAATTCTACACATCGTTTGCCAAGAAAGAAGGATTTGGAGTTCGTGTTCGGTCTACTAAGAAATTTTTTTGCATGTTTGTATGCGCTAATGAAGGTACACATATAGTAAAGGGTGAAAATGAAGAAGGGAAGAGAAAGCGTTCAACCTCAAGAACTGATTGTAAAGCATCACTTACTGTTTCAAAAGCAGGGAAGAGAAGTAAATGGGTTATAAAAAGCATAAACAATGTTCATAATCATGGAATGGTTAGTCCTAAGAGTGTGGCCTATCTGCGGTCTCATAAGAAAATGACTGCAGCAACTAAAAGCCTCGTTGAGAAGTTTGATGAAGAAGGAGTACCTACAGGGAAAGTTGCTACAATGTTTCAGGGTGAAGATAATGCTTTTTCTAGTCGGGATTGCTGGAACCATCTTAGAAATTTCAGAAGAAGAAATCTTGATGTGGGAGATGCTCAAGCTGTGTTTAAATTTTGCAAGAAAAAACAAGTTGAGAATCCCAATTTTTTTTATGCAATACAATGTGATGATGAAGATAGAATGATAAATTTCTTCTGGGTGGATGGAAGAGCAAGATTGGCATATCAATTTTTTGGTGATGTTGTTACATTTGATACAACATATAAAACCAACAAGTATGATATGCCATTTGCACCCTTCACCGGATTGAATCATCATTTTCAATCTATCTTATTTGGATGTGCTTTGTTGCAAGATGAGACTCAGAAGACGTTTGAGTGGTTGTTTAGAACATGGCTAGACGCAATGGGTGGTAAATATCCAGTGTCAATAATAACAGATCAAGACTTGGCAATGAAAGCTGCCATAGCCAATGTTTTCCCACATACTCGTCACCGGTTATGTTTATGGCACATAAAAAAAAAAATTTGCTTAGAAGCTTTCCCACATATACCACAAAAATTCAACTTTCAAGCGTAAATTGAAATCTTGTATTCGTGATTCGCCATCTATAGAATACGTTGAAGAAGAATGGGAACGTATAATGGTTGATTATAATTTGAAGGAGAATGAATGGCTTAAAGGGTTGTACGATATAAGAAAATCATGGATTCCTGTTTTCAACAGAAGCACTTTTTTTGCCGGCATGAACACTAAACAAAGGAGTGAGAGTATTAATGCTTTTTTTGATTCTTTTGTTAATTCTTCAACAACACTACAAGATTTTGTAGTTAAATTTGACAAGGAAATGGATAGTCGCTATGAAAAACAAAGAAGAGAGGATTTTGAATCAAGGCATCGATTGCGACTCGTAGTTGTTAAGTCAAAAATTGAGGAGCATGCAGCATCAATATATACAAGAAACATTTTTGGGAAGTTTCACGATGAGTTTATAAAGATTATTCAATTTAGGAGGGAAAAACTTGAAAAAGAAGGGTCTCAGTATAGATATAAGGTATCTAATGATTATGACTCGAAAGACACATTCATAGTTTGTGTGGATCTGGAGACAAAGGTTGCTACTTGTGACTGCCAGCTTTTTCAATTTATGGGATTGCTATGTAGGCATATCTTGGTGATTTTTCATGCAAAAAATGTTGTAGAAATTCCAGACATGTATATTTTAAAGCGTTGGACAAAGGATGCTAACAAAGGTGCTGTGTTTATTGAAGATGGACCAGAGTCTTCCTCTACAGGAAACTCATCAACTTTGCGAAGTTTACATGTACACAAACAAGCAAGTTTGTTACCTGATCTTGCAGCAAAATCTGAGAAAATATATAAGCTGATATCATCTGATTTGGAGGAAACATACAAAAAAGCGTTGATAATGGAAGCTGAATTAGACAATGAGAGCGACATAATTCCTCCATATGCAAGTTGTCAAAATCTGATGCATGAGCAACCAAGTGAGTCTTCAGAACCAATTATTAGAGATCCACTCCCATCACAAACTAAAGGCAGAAAAAAAATTCAATCAAAGAGACTCAAAATGGAAGGATCAAAAGCAGTCTAG
Protein sequence

>MS.gene38184.t1

MDNECVENSTVECLEDHEIVDDVCNDLEPNSENSKSPEANICPIVDMEFDSIADVKEFYTSFAKKEGFGVRVRSTKKFFCMFVCANEGTHIVKGENEEGKRKRSTSRTDCKASLTVSKAGKRSKWVIKSINNVHNHGMVSPKSVAYLRSHKKMTAATKSLVEKFDEEGVPTGKVATMFQGEDNAFSSRDCWNHLRNFRRRNLDVGDAQAVFKFCKKKQVENPNFFYAIQCDDEDRMINFFWVDGRARLAYQFFGDVVTFDTTYKTNKYDMPFAPFTGLNHHFQSILFGCALLQDETQKTFEWLFRTWLDAMGEYVEEEWERIMVDYNLKENEWLKGLYDIRKSWIPVFNRSTFFAGMNTKQRSESINAFFDSFVNSSTTLQDFVVKFDKEMDSRYEKQRREDFESRHRLRLVVVKSKIEEHAASIYTRNIFGKFHDEFIKIIQFRREKLEKEGSQYRYKVSNDYDSKDTFIVCVDLETKVATCDCQLFQFMGLLCRHILVIFHAKNVVEIPDMYILKRWTKDANKGAVFIEDGPESSSTGNSSTLRSLHVHKQASLLPDLAAKSEKIYKLISSDLEETYKKALIMEAELDNESDIIPPYASCQNLMHEQPSESSEPIIRDPLPSQTKGRKKIQSKRLKMEGSKAV