AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene38186

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38186.t1 MTR_7g005280 76.078 255 23 7 1 219 4 256 5.22e-124 351
MS.gene38186.t1 MTR_8g099750 54.315 197 74 6 1 187 4 194 4.62e-67 206
MS.gene38186.t1 MTR_3g098810 51.659 211 83 5 1 193 4 213 5.95e-65 201
MS.gene38186.t1 MTR_7g070140 64.417 163 18 2 57 219 12 134 2.07e-63 193
MS.gene38186.t1 MTR_3g098810 61.074 149 56 2 1 148 4 151 1.72e-58 182
MS.gene38186.t1 MTR_4g081870 59.748 159 50 4 12 160 9 163 3.28e-58 185
MS.gene38186.t1 MTR_7g085220 50.562 178 73 3 9 171 5 182 1.54e-57 185
MS.gene38186.t1 MTR_5g041940 58.125 160 53 3 10 159 1 156 1.95e-57 182
MS.gene38186.t1 MTR_2g080010 58.537 164 49 4 12 158 15 176 4.40e-57 184
MS.gene38186.t1 MTR_4g089135 54.802 177 49 4 11 158 14 188 4.46e-56 182
MS.gene38186.t1 MTR_2157s0010 54.938 162 57 4 12 158 8 168 1.50e-54 175
MS.gene38186.t1 MTR_7g100990 54.088 159 61 4 7 155 6 162 3.70e-54 176
MS.gene38186.t1 MTR_3g088110 52.841 176 69 3 9 175 4 174 2.60e-53 173
MS.gene38186.t1 MTR_7g070150 88.421 95 8 2 100 194 1 92 3.98e-53 166
MS.gene38186.t1 MTR_2g093810 53.896 154 59 3 12 155 14 165 5.12e-52 171
MS.gene38186.t1 MTR_2g079990 51.124 178 77 3 8 179 12 185 6.97e-51 169
MS.gene38186.t1 MTR_3g109340 51.479 169 75 4 9 173 19 184 8.07e-51 168
MS.gene38186.t1 MTR_3g109340 51.176 170 75 4 9 173 19 185 1.31e-50 168
MS.gene38186.t1 MTR_1g008740 50.857 175 78 4 9 177 10 182 1.63e-50 167
MS.gene38186.t1 MTR_1g008740 50.857 175 78 4 9 177 24 196 1.86e-50 167
MS.gene38186.t1 MTR_8g094580 45.622 217 92 8 8 213 3 204 2.40e-50 165
MS.gene38186.t1 MTR_6g084430 50.898 167 74 3 9 171 2 164 3.57e-50 166
MS.gene38186.t1 MTR_8g059170 46.789 218 85 7 9 213 11 210 2.08e-49 164
MS.gene38186.t1 MTR_4g036030 49.704 169 74 4 11 172 6 170 2.12e-49 164
MS.gene38186.t1 MTR_3g064580 55.696 158 57 3 10 158 4 157 2.98e-49 170
MS.gene38186.t1 MTR_5g021710 45.745 188 91 4 9 189 5 188 3.31e-49 164
MS.gene38186.t1 MTR_7g085260 49.425 174 79 4 10 175 15 187 3.64e-49 165
MS.gene38186.t1 MTR_8g076110 50.610 164 69 5 12 168 6 164 4.22e-49 162
MS.gene38186.t1 MTR_5g012080 47.024 168 78 3 11 170 6 170 4.39e-49 164
MS.gene38186.t1 MTR_3g096920 49.724 181 75 6 8 179 3 176 7.40e-49 161
MS.gene38186.t1 MTR_4g101680 50.617 162 69 3 11 165 6 163 8.24e-49 163
MS.gene38186.t1 MTR_2g064090 50.000 174 73 5 10 174 4 172 2.72e-48 162
MS.gene38186.t1 MTR_4g108760 51.235 162 67 4 5 158 10 167 2.76e-48 162
MS.gene38186.t1 MTR_4g035590 54.839 155 58 5 12 159 8 157 3.42e-48 161
MS.gene38186.t1 MTR_3g435150 50.000 164 70 3 3 158 7 166 3.78e-48 160
MS.gene38186.t1 MTR_2g062730 48.171 164 75 3 3 159 1 161 6.71e-48 160
MS.gene38186.t1 MTR_6g032770 49.390 164 73 3 10 165 16 177 8.34e-48 161
MS.gene38186.t1 MTR_1g096430 50.318 157 67 3 9 158 4 156 5.64e-47 158
MS.gene38186.t1 MTR_6g477900 46.893 177 78 5 10 175 4 175 6.19e-47 155
MS.gene38186.t1 MTR_5g090970 45.498 211 89 6 5 201 12 210 7.70e-47 157
MS.gene38186.t1 MTR_3g070030 50.000 170 70 5 6 165 13 177 9.57e-47 158
MS.gene38186.t1 MTR_1g069805 43.128 211 98 5 12 209 10 211 1.11e-46 155
MS.gene38186.t1 MTR_5g076850 52.866 157 62 4 10 158 4 156 1.58e-46 162
MS.gene38186.t1 MTR_2g079990 44.776 201 73 3 8 174 12 208 1.68e-46 158
MS.gene38186.t1 MTR_5g090970 45.283 212 89 6 5 201 12 211 2.49e-46 155
MS.gene38186.t1 MTR_6g012670 48.466 163 72 4 4 158 12 170 2.54e-46 156
MS.gene38186.t1 MTR_2g078700 50.633 158 68 3 9 158 20 175 4.10e-46 157
MS.gene38186.t1 MTR_2g068880 39.910 223 105 4 4 208 15 226 4.75e-46 155
MS.gene38186.t1 MTR_2g068920 45.355 183 80 4 2 166 12 192 8.74e-46 154
MS.gene38186.t1 MTR_8g467490 38.843 242 112 6 4 212 7 245 5.57e-45 154
MS.gene38186.t1 MTR_5g040420 46.857 175 76 4 5 165 8 179 7.20e-45 154
MS.gene38186.t1 MTR_8g024480 44.828 174 74 3 4 159 7 176 9.23e-45 154
MS.gene38186.t1 MTR_2g064470 43.128 211 86 8 9 209 8 194 1.07e-44 151
MS.gene38186.t1 MTR_3g116070 54.667 150 61 5 2 147 14 160 2.07e-44 152
MS.gene38186.t1 MTR_7g097090 51.351 148 66 3 12 156 10 154 2.99e-44 149
MS.gene38186.t1 MTR_5g069030 50.955 157 65 3 11 159 24 176 3.77e-44 156
MS.gene38186.t1 MTR_3g093040 47.771 157 70 3 10 158 106 258 1.04e-43 149
MS.gene38186.t1 MTR_5g014300 47.170 159 76 2 8 158 2 160 1.32e-43 149
MS.gene38186.t1 MTR_7g011120 48.824 170 66 5 6 159 2 166 1.73e-43 148
MS.gene38186.t1 MTR_7g011130 46.023 176 68 4 6 159 13 183 2.93e-43 149
MS.gene38186.t1 MTR_3g093050 48.447 161 71 3 12 164 22 178 5.80e-43 152
MS.gene38186.t1 MTR_3g096920 55.882 136 52 2 8 140 3 133 8.12e-43 147
MS.gene38186.t1 MTR_3g093050 49.677 155 66 3 12 158 22 172 9.11e-43 152
MS.gene38186.t1 MTR_6g011860 47.531 162 67 4 12 158 15 173 3.23e-42 147
MS.gene38186.t1 MTR_4g098630 44.767 172 86 3 12 175 6 176 1.30e-41 144
MS.gene38186.t1 MTR_3g070040 45.294 170 76 3 6 165 2 164 2.45e-41 143
MS.gene38186.t1 MTR_3g096140 47.742 155 63 5 15 158 10 157 4.78e-41 141
MS.gene38186.t1 MTR_3g096140 47.742 155 63 5 15 158 10 157 5.10e-40 140
MS.gene38186.t1 MTR_1g090720 50.617 162 60 4 12 158 42 198 1.03e-39 142
MS.gene38186.t1 MTR_4g075980 47.059 153 74 4 9 158 13 161 9.81e-39 135
MS.gene38186.t1 MTR_2g086880 43.169 183 83 6 4 175 5 177 1.04e-38 140
MS.gene38186.t1 MTR_2g086880 43.169 183 83 6 4 175 5 177 1.84e-38 140
MS.gene38186.t1 MTR_8g063550 45.912 159 70 4 11 159 5 157 9.53e-38 134
MS.gene38186.t1 MTR_8g063550 45.912 159 70 4 11 159 5 157 2.58e-37 135
MS.gene38186.t1 MTR_8g063550 45.912 159 70 4 11 159 5 157 3.39e-37 134
MS.gene38186.t1 MTR_4g134460 47.771 157 73 5 9 161 52 203 8.59e-37 133
MS.gene38186.t1 MTR_8g023840 46.358 151 70 5 12 156 11 156 2.53e-36 131
MS.gene38186.t1 MTR_1g097300 51.908 131 50 3 15 138 22 146 2.88e-36 134
MS.gene38186.t1 MTR_1g090723 46.405 153 69 4 15 158 11 159 3.52e-36 134
MS.gene38186.t1 MTR_0036s0150 46.711 152 69 4 15 158 8 155 5.57e-36 132
MS.gene38186.t1 MTR_1g090723 46.053 152 70 4 15 158 11 158 7.26e-36 133
MS.gene38186.t1 MTR_1g090723 46.053 152 70 4 15 158 11 158 8.91e-36 133
MS.gene38186.t1 MTR_8g093580 44.654 159 72 4 11 159 5 157 2.67e-35 130
MS.gene38186.t1 MTR_4g094302 41.401 157 70 4 12 156 11 157 6.63e-32 115
MS.gene38186.t1 MTR_8g023860 40.789 152 79 5 11 156 11 157 8.74e-32 120
MS.gene38186.t1 MTR_3g096140 44.681 141 60 5 29 158 3 136 3.20e-31 117
MS.gene38186.t1 MTR_4g094302 45.385 130 58 3 12 138 11 130 1.69e-30 110
MS.gene38186.t1 MTR_8g094580 42.767 159 70 6 62 213 6 150 2.33e-30 112
MS.gene38186.t1 MTR_8g023930 41.830 153 78 5 12 158 24 171 9.83e-30 115
MS.gene38186.t1 MTR_2g086690 40.994 161 75 6 13 157 5 161 1.47e-29 110
MS.gene38186.t1 MTR_4g052620 40.625 160 78 6 12 157 5 161 2.91e-29 110
MS.gene38186.t1 MTR_8g023900 41.722 151 77 5 14 158 195 340 1.21e-28 112
MS.gene38186.t1 MTR_8g023900 38.889 162 88 5 12 167 12 168 6.94e-28 110
MS.gene38186.t1 MTR_8g023880 38.298 188 85 8 12 178 7 184 1.37e-28 108
MS.gene38186.t1 MTR_8g093790 40.000 165 72 7 10 171 8 148 1.71e-28 106
MS.gene38186.t1 MTR_7g105170 34.706 170 83 7 12 160 4 166 9.62e-24 95.5
MS.gene38186.t1 MTR_7g083370 31.915 141 87 4 7 143 5 140 3.49e-18 78.2
MS.gene38186.t1 MTR_3g096400 32.143 168 80 7 10 156 5 159 3.53e-18 79.7
MS.gene38186.t1 MTR_7g083360 32.836 134 81 4 7 136 5 133 5.92e-18 77.8
MS.gene38186.t1 MTR_7g083330 32.353 170 104 6 2 166 9 172 2.88e-17 77.0
MS.gene38186.t1 MTR_1g045470 34.247 146 81 6 20 154 13 154 3.08e-15 73.6
MS.gene38186.t1 MTR_4g078875 33.557 149 74 7 12 140 48 191 2.61e-14 70.5
MS.gene38186.t1 MTR_2g014680 32.919 161 74 9 4 138 41 193 1.57e-12 65.9
MS.gene38186.t1 MTR_4g088245 27.717 184 104 9 12 176 68 241 4.08e-12 64.7
MS.gene38186.t1 MTR_2g090735 28.095 210 113 10 12 199 49 242 4.12e-12 64.3
MS.gene38186.t1 MTR_8g069160 30.872 149 79 7 12 141 68 211 8.43e-12 63.2
MS.gene38186.t1 MTR_8g102240 30.058 173 89 8 12 158 47 213 9.99e-12 63.9
MS.gene38186.t1 MTR_8g102240 30.058 173 89 8 12 158 47 213 1.00e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38186.t1 AT5G13180 71.515 165 41 3 1 161 1 163 2.12e-81 243
MS.gene38186.t1 AT2G33480 70.253 158 42 2 4 160 7 160 4.60e-79 238
MS.gene38186.t1 AT2G33480 69.375 160 42 2 4 160 7 162 7.66e-79 237
MS.gene38186.t1 AT3G04070 52.381 189 69 5 3 177 1 182 9.14e-57 183
MS.gene38186.t1 AT1G69490 58.282 163 53 4 12 164 9 166 1.35e-56 181
MS.gene38186.t1 AT1G61110 57.895 171 47 5 8 158 12 177 1.37e-55 180
MS.gene38186.t1 AT3G04070 48.780 205 68 5 3 177 1 198 1.04e-54 179
MS.gene38186.t1 AT1G77450 51.705 176 68 5 3 168 1 169 1.33e-53 172
MS.gene38186.t1 AT5G39610 50.898 167 70 3 1 159 9 171 7.62e-53 172
MS.gene38186.t1 AT3G15510 56.875 160 50 4 16 158 21 178 1.16e-52 173
MS.gene38186.t1 AT4G27410 52.147 163 68 3 9 165 11 169 2.85e-52 171
MS.gene38186.t1 AT2G24430 54.217 166 67 4 6 166 10 171 5.73e-52 170
MS.gene38186.t1 AT2G24430 54.217 166 67 4 6 166 10 171 5.73e-52 170
MS.gene38186.t1 AT5G61430 52.695 167 67 5 3 161 7 169 2.65e-51 169
MS.gene38186.t1 AT1G52880 53.216 171 58 3 16 172 21 183 9.87e-51 167
MS.gene38186.t1 AT1G01720 45.327 214 98 6 10 213 5 209 1.26e-50 166
MS.gene38186.t1 AT5G07680 52.174 161 65 4 9 161 14 170 2.26e-50 166
MS.gene38186.t1 AT5G07680 53.165 158 62 4 12 161 3 156 3.55e-50 166
MS.gene38186.t1 AT1G62700 49.718 177 78 4 11 180 6 178 4.72e-50 167
MS.gene38186.t1 AT1G62700 49.718 177 78 4 11 180 6 178 4.72e-50 167
MS.gene38186.t1 AT1G65910 43.243 222 101 5 10 210 4 221 5.57e-50 172
MS.gene38186.t1 AT1G33280 51.948 154 64 2 12 159 8 157 6.02e-50 165
MS.gene38186.t1 AT1G12260 50.000 168 73 4 12 172 7 170 7.78e-50 166
MS.gene38186.t1 AT3G18400 53.548 155 63 4 9 158 2 152 1.13e-49 164
MS.gene38186.t1 AT4G10350 46.411 209 73 8 12 211 9 187 1.18e-49 165
MS.gene38186.t1 AT4G27410 47.222 180 68 3 9 165 11 186 1.30e-49 164
MS.gene38186.t1 AT3G04060 53.503 157 62 4 10 158 18 171 1.83e-49 164
MS.gene38186.t1 AT5G63790 49.444 180 74 5 3 171 41 214 1.90e-49 164
MS.gene38186.t1 AT5G63790 49.444 180 74 5 3 171 51 224 2.55e-49 164
MS.gene38186.t1 AT1G76420 53.846 156 63 4 9 158 19 171 2.66e-49 164
MS.gene38186.t1 AT1G12260 49.704 169 74 4 11 172 6 170 2.99e-49 165
MS.gene38186.t1 AT5G66300 51.829 164 67 4 4 159 4 163 3.24e-49 162
MS.gene38186.t1 AT5G18270 52.229 157 64 3 10 158 19 172 3.72e-49 164
MS.gene38186.t1 AT2G18060 49.162 179 77 5 12 183 9 180 3.88e-49 164
MS.gene38186.t1 AT2G18060 49.162 179 77 5 12 183 9 180 3.88e-49 164
MS.gene38186.t1 AT5G17260 50.602 166 69 3 10 166 4 165 5.36e-49 166
MS.gene38186.t1 AT1G33060 52.903 155 61 3 12 158 24 174 5.52e-49 169
MS.gene38186.t1 AT1G33060 52.903 155 61 3 12 158 24 174 5.64e-49 169
MS.gene38186.t1 AT5G18270 52.229 157 64 3 10 158 19 172 7.72e-49 163
MS.gene38186.t1 AT4G36160 48.315 178 75 5 12 180 14 183 1.02e-48 164
MS.gene38186.t1 AT4G36160 48.315 178 75 5 12 180 10 179 1.09e-48 163
MS.gene38186.t1 AT4G36160 48.315 178 75 5 12 180 10 179 1.09e-48 163
MS.gene38186.t1 AT3G03200 48.538 171 75 3 10 171 4 170 1.21e-48 166
MS.gene38186.t1 AT1G52890 50.920 163 70 3 9 165 11 169 1.33e-48 162
MS.gene38186.t1 AT5G62380 52.830 159 60 6 10 159 5 157 1.62e-48 162
MS.gene38186.t1 AT5G62380 52.830 159 60 6 10 159 5 157 1.62e-48 162
MS.gene38186.t1 AT1G54330 53.049 164 64 3 10 166 4 161 3.88e-48 160
MS.gene38186.t1 AT3G17730 50.955 157 65 3 10 158 4 156 5.65e-48 158
MS.gene38186.t1 AT3G15500 49.123 171 77 3 9 173 11 177 9.55e-48 159
MS.gene38186.t1 AT5G08790 52.071 169 62 6 9 165 4 165 1.02e-47 158
MS.gene38186.t1 AT3G15170 49.405 168 74 5 9 168 17 181 1.63e-47 159
MS.gene38186.t1 AT1G79580 49.693 163 71 3 4 159 9 167 1.89e-47 160
MS.gene38186.t1 AT1G79580 49.693 163 71 3 4 159 9 167 1.89e-47 160
MS.gene38186.t1 AT1G79580 49.693 163 71 3 4 159 9 167 1.89e-47 160
MS.gene38186.t1 AT1G79580 49.693 163 71 3 4 159 9 167 1.89e-47 160
MS.gene38186.t1 AT1G79580 49.693 163 71 3 4 159 9 167 1.89e-47 160
MS.gene38186.t1 AT4G35580 45.918 196 86 5 12 199 9 192 5.28e-47 162
MS.gene38186.t1 AT4G35580 45.918 196 86 5 12 199 9 192 5.75e-47 162
MS.gene38186.t1 AT4G35580 45.918 196 86 5 12 199 9 192 5.89e-47 162
MS.gene38186.t1 AT5G46590 45.506 178 85 3 8 176 2 176 9.72e-47 156
MS.gene38186.t1 AT3G29035 48.235 170 76 3 4 165 16 181 1.13e-46 157
MS.gene38186.t1 AT5G53950 51.613 155 65 3 12 158 17 169 2.27e-46 157
MS.gene38186.t1 AT3G12977 44.262 183 89 5 9 182 15 193 4.18e-46 154
MS.gene38186.t1 AT1G71930 48.701 154 68 3 12 158 9 158 5.86e-46 155
MS.gene38186.t1 AT1G71930 48.701 154 68 3 12 158 9 158 5.86e-46 155
MS.gene38186.t1 AT3G10490 51.282 156 63 3 12 158 27 178 1.15e-45 152
MS.gene38186.t1 AT3G10480 51.923 156 62 3 12 158 27 178 1.19e-45 157
MS.gene38186.t1 AT1G56010 45.977 174 80 4 9 172 16 185 2.21e-45 154
MS.gene38186.t1 AT3G10500 51.613 155 63 3 12 158 9 159 8.34e-45 157
MS.gene38186.t1 AT2G33480 65.421 107 30 2 57 160 3 105 1.57e-44 148
MS.gene38186.t1 AT3G10480 51.613 155 63 3 12 158 27 177 1.61e-44 154
MS.gene38186.t1 AT5G04410 52.258 155 62 3 12 158 9 159 1.92e-44 156
MS.gene38186.t1 AT2G46770 44.382 178 73 4 4 159 8 181 2.68e-44 152
MS.gene38186.t1 AT3G61910 41.753 194 86 6 4 175 3 191 3.60e-44 150
MS.gene38186.t1 AT5G39820 43.500 200 75 6 4 176 13 201 5.37e-44 150
MS.gene38186.t1 AT3G10490 51.282 156 63 3 12 158 27 178 1.14e-43 152
MS.gene38186.t1 AT1G32770 44.186 172 73 4 7 159 11 178 1.87e-43 149
MS.gene38186.t1 AT5G46590 48.299 147 68 2 8 149 2 145 5.02e-43 146
MS.gene38186.t1 AT4G17980 46.584 161 74 3 8 158 2 160 5.10e-43 145
MS.gene38186.t1 AT4G17980 46.584 161 74 3 8 158 2 160 6.48e-43 146
MS.gene38186.t1 AT2G17040 44.385 187 83 6 9 178 4 186 1.25e-42 145
MS.gene38186.t1 AT3G12910 47.590 166 66 6 10 156 20 183 1.00e-41 144
MS.gene38186.t1 AT3G49530 47.097 155 71 4 12 158 13 164 1.21e-41 146
MS.gene38186.t1 AT5G24590 48.125 160 64 5 12 159 13 165 1.32e-41 146
MS.gene38186.t1 AT3G49530 47.097 155 71 4 12 158 13 164 1.69e-41 147
MS.gene38186.t1 AT3G10480 42.857 189 62 3 12 158 27 211 8.84e-41 145
MS.gene38186.t1 AT4G28530 47.337 169 67 5 11 160 9 174 1.04e-40 142
MS.gene38186.t1 AT1G32510 45.833 168 79 3 12 167 6 173 1.60e-40 140
MS.gene38186.t1 AT1G26870 46.746 169 72 5 5 158 10 175 2.05e-40 143
MS.gene38186.t1 AT2G43000 39.623 212 108 6 9 213 16 214 6.34e-40 138
MS.gene38186.t1 AT2G02450 49.669 151 68 5 15 161 54 200 1.20e-38 137
MS.gene38186.t1 AT2G02450 49.669 151 68 5 15 161 54 200 1.40e-38 138
MS.gene38186.t1 AT1G34190 46.296 162 72 5 6 158 11 166 2.59e-36 134
MS.gene38186.t1 AT5G64060 44.654 159 76 3 8 158 2 156 4.45e-36 130
MS.gene38186.t1 AT1G34180 50.000 142 61 3 2 138 7 143 5.02e-36 132
MS.gene38186.t1 AT1G34180 50.000 142 61 3 2 138 7 143 1.43e-35 132
MS.gene38186.t1 AT5G09330 47.500 160 70 4 8 158 2 156 1.92e-35 130
MS.gene38186.t1 AT5G09330 47.500 160 70 4 8 158 2 156 1.92e-35 130
MS.gene38186.t1 AT5G09330 47.500 160 70 4 8 158 2 156 1.92e-35 130
MS.gene38186.t1 AT5G09330 47.500 160 70 4 8 158 2 156 1.92e-35 130
MS.gene38186.t1 AT5G09330 47.500 160 70 4 8 158 2 156 1.92e-35 130
MS.gene38186.t1 AT1G34180 46.104 154 61 3 2 138 7 155 6.50e-35 129
MS.gene38186.t1 AT1G34180 46.104 154 61 3 2 138 7 155 1.71e-34 129
MS.gene38186.t1 AT5G22290 41.212 165 80 5 15 175 24 175 3.13e-34 125
MS.gene38186.t1 AT2G27300 43.448 145 70 3 15 155 17 153 4.20e-34 124
MS.gene38186.t1 AT5G04395 42.857 147 67 2 9 139 25 170 9.76e-34 119
MS.gene38186.t1 AT3G44290 42.759 145 71 3 15 155 17 153 1.24e-33 120
MS.gene38186.t1 AT4G10350 45.395 152 50 6 62 210 18 139 2.36e-33 121
MS.gene38186.t1 AT3G44290 42.759 145 71 3 15 155 17 153 1.42e-32 120
MS.gene38186.t1 AT5G14000 38.415 164 93 4 7 167 10 168 4.41e-32 116
MS.gene38186.t1 AT1G56010 49.558 113 47 2 66 172 10 118 1.03e-30 114
MS.gene38186.t1 AT5G61430 53.333 105 40 3 62 161 6 106 1.32e-30 114
MS.gene38186.t1 AT5G14000 40.136 147 81 3 7 150 10 152 1.54e-30 110
MS.gene38186.t1 AT1G02230 40.588 170 87 7 13 175 4 166 1.88e-30 115
MS.gene38186.t1 AT3G12977 46.032 126 58 4 63 182 19 140 2.34e-30 112
MS.gene38186.t1 AT1G02250 42.484 153 76 5 13 158 4 151 8.12e-29 111
MS.gene38186.t1 AT1G32870 48.951 143 60 4 1 138 1 135 3.13e-28 111
MS.gene38186.t1 AT1G32870 48.951 143 60 4 1 138 1 135 3.53e-28 111
MS.gene38186.t1 AT5G64530 36.170 188 88 5 10 178 1 175 3.81e-28 105
MS.gene38186.t1 AT1G32870 48.951 143 60 4 1 138 37 171 5.13e-28 111
MS.gene38186.t1 AT5G50820 39.437 142 81 2 3 144 8 144 6.24e-28 105
MS.gene38186.t1 AT4G01550 37.278 169 96 5 10 171 2 167 6.26e-27 107
MS.gene38186.t1 AT5G64530 43.511 131 59 4 10 138 1 118 6.57e-27 101
MS.gene38186.t1 AT4G01520 37.647 170 94 6 13 175 5 169 4.90e-26 102
MS.gene38186.t1 AT4G01540 38.095 168 92 6 15 175 7 169 1.40e-25 102
MS.gene38186.t1 AT4G01540 38.095 168 92 6 15 175 7 169 2.04e-25 102
MS.gene38186.t1 AT4G01540 38.095 168 92 6 15 175 7 169 2.78e-25 102
MS.gene38186.t1 AT4G01540 38.095 168 92 6 15 175 7 169 3.83e-25 102
MS.gene38186.t1 AT3G04420 38.125 160 84 6 13 165 4 155 8.24e-25 100
MS.gene38186.t1 AT3G04420 38.125 160 84 6 13 165 4 155 8.53e-25 99.4
MS.gene38186.t1 AT3G44350 37.500 160 83 5 12 158 5 160 8.66e-25 98.2
MS.gene38186.t1 AT5G22380 37.342 158 80 5 15 157 8 161 7.57e-24 95.5
MS.gene38186.t1 AT3G44350 39.007 141 73 4 12 143 5 141 2.88e-23 92.0
MS.gene38186.t1 AT2G18060 47.959 98 43 3 87 183 2 92 3.83e-22 91.7
MS.gene38186.t1 AT1G02220 38.710 155 73 6 13 157 4 146 4.16e-22 93.6
MS.gene38186.t1 AT2G43000 36.111 144 76 4 74 213 5 136 7.36e-21 86.7
MS.gene38186.t1 AT3G10490 51.852 81 31 2 82 158 2 78 2.43e-20 88.2
MS.gene38186.t1 AT3G10490 51.852 81 31 2 82 158 2 78 2.43e-20 88.2
MS.gene38186.t1 AT4G28530 40.458 131 57 4 11 122 9 137 4.23e-19 84.3
MS.gene38186.t1 AT1G01010 35.849 159 81 7 14 158 5 156 5.05e-18 82.0
MS.gene38186.t1 AT5G22290 44.828 87 35 4 88 174 2 75 2.31e-15 72.8
MS.gene38186.t1 AT5G14000 56.604 53 23 0 7 59 10 62 8.15e-15 71.6
MS.gene38186.t1 AT3G55210 32.544 169 80 8 12 157 11 168 8.30e-15 72.0
MS.gene38186.t1 AT1G28470 32.530 166 87 9 12 158 77 236 1.95e-14 71.2
MS.gene38186.t1 AT4G29230 31.818 176 87 9 10 158 46 215 2.08e-14 72.0
MS.gene38186.t1 AT4G29230 31.818 176 87 9 10 158 45 214 2.35e-14 71.6
MS.gene38186.t1 AT3G56530 33.962 159 88 7 9 157 49 200 2.73e-14 70.9
MS.gene38186.t1 AT4G29230 31.818 176 87 9 10 158 46 215 2.77e-14 71.2
MS.gene38186.t1 AT5G41090 27.329 161 97 4 12 159 8 161 1.12e-13 67.8
MS.gene38186.t1 AT5G56620 31.447 159 74 7 10 138 41 194 4.32e-13 67.8
MS.gene38186.t1 AT5G56620 31.447 159 74 7 10 138 41 194 4.38e-13 67.8
MS.gene38186.t1 AT5G56620 31.447 159 74 7 10 138 41 194 5.30e-13 67.4
MS.gene38186.t1 AT4G28500 30.539 167 90 8 12 158 59 219 3.31e-12 64.7

Find 48 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCACTCCCATCCTCTTT+TGG 0.255864 5.3:+78931220 MS.gene38186:CDS
CTCCTCAATCACAAATGAAT+TGG 0.308698 5.3:+78931171 MS.gene38186:CDS
CTGTTAGGTCGGTTCCCATT+TGG 0.321045 5.3:-78930741 None:intergenic
AGTTGTTCTATTAGGTGATA+TGG 0.340411 5.3:+78930677 MS.gene38186:intron
GAGCTACAAACTCTGGTTAC+TGG 0.345872 5.3:+78930763 MS.gene38186:CDS
ATCTTTGCAAGTCTGATCCT+TGG 0.370348 5.3:+78930464 MS.gene38186:CDS
TCTTTGCAAGTCTGATCCTT+GGG 0.393386 5.3:+78930465 MS.gene38186:CDS
CCAGAGTTTGTAGCTCTGTT+AGG 0.395794 5.3:-78930756 None:intergenic
ATCCAATTCATTTGTGATTG+AGG 0.401398 5.3:-78931173 None:intergenic
TTACTGGAAGGCAACTGGTT+TGG 0.413426 5.3:+78930779 MS.gene38186:CDS
AAGACGACTCGTGAAGTTGT+TGG 0.418647 5.3:+78930825 MS.gene38186:CDS
TTCATTTGTGATTGAGGAGG+AGG 0.421555 5.3:-78931167 None:intergenic
CTTCATCTGTTGGATGAAAA+CGG 0.429980 5.3:-78930369 None:intergenic
TCTGGTTACTGGAAGGCAAC+TGG 0.438388 5.3:+78930774 MS.gene38186:CDS
CTCAGCTTCAAGTTCAAAAG+TGG 0.464412 5.3:+78931096 MS.gene38186:CDS
ACAACAAGTTCTTCATCTGT+TGG 0.464543 5.3:-78930379 None:intergenic
GACTTGCAAAGATCAACTTC+AGG 0.465462 5.3:-78930454 None:intergenic
AAGATCAACTTCAGGAATGA+TGG 0.468508 5.3:-78930446 None:intergenic
TTCCTCTCACTCCAACCCCT+TGG 0.484311 5.3:+78930932 MS.gene38186:CDS
ATAGAAGCGAAATATCCAAA+TGG 0.493277 5.3:+78930726 MS.gene38186:CDS
AAAGGGAAAGAGAAGACCTT+AGG 0.496728 5.3:-78930415 None:intergenic
TAGAAGCGAAATATCCAAAT+GGG 0.498616 5.3:+78930727 MS.gene38186:CDS
TGTTCAATATTTGAAGCCTA+AGG 0.506309 5.3:+78930399 MS.gene38186:CDS
GAATGATGGAAGCAGGTAAA+GGG 0.510410 5.3:-78930432 None:intergenic
GGTTGGAGTGAGAGGAAGTG+AGG 0.514880 5.3:-78930926 None:intergenic
TAAGCATTTCCAAAAGAGGA+TGG 0.518802 5.3:-78931229 None:intergenic
GGATTAAGCATTTCCAAAAG+AGG 0.521576 5.3:-78931233 None:intergenic
GGAATGATGGAAGCAGGTAA+AGG 0.533367 5.3:-78930433 None:intergenic
AGAAAGATTGACCAAGGGGT+TGG 0.542070 5.3:-78930943 None:intergenic
ACTTCAGGAATGATGGAAGC+AGG 0.542259 5.3:-78930439 None:intergenic
GACCAAGGGGTTGGAGTGAG+AGG 0.544808 5.3:-78930934 None:intergenic
CTCGTGGTTCAAGAACTGAT+TGG 0.548704 5.3:+78930886 MS.gene38186:CDS
TGTGTCGCATATTTCTGAAG+AGG 0.550703 5.3:+78931047 MS.gene38186:CDS
CCTAACAGAGCTACAAACTC+TGG 0.560802 5.3:+78930756 MS.gene38186:CDS
AAGCATTTCCAAAAGAGGAT+GGG 0.563423 5.3:-78931228 None:intergenic
CAATTCATTTGTGATTGAGG+AGG 0.568174 5.3:-78931170 None:intergenic
TCTGATCCTTGGGATTTACC+TGG 0.570788 5.3:+78930475 MS.gene38186:CDS
GGATGAAAACGGAAACCTGC+TGG 0.571341 5.3:-78930358 None:intergenic
AGTTTGTAGCTCTGTTAGGT+CGG 0.574980 5.3:-78930752 None:intergenic
GGTGAAGTGAGATTGCCAGC+AGG 0.595430 5.3:+78930343 MS.gene38186:CDS
CGCATATTTCTGAAGAGGAG+AGG 0.611502 5.3:+78931052 MS.gene38186:CDS
TACAAACTCTGGTTACTGGA+AGG 0.635081 5.3:+78930767 MS.gene38186:CDS
AGCATACCAGGTAAATCCCA+AGG 0.639829 5.3:-78930481 None:intergenic
TACAGAGGCAAACCACCTCG+TGG 0.680005 5.3:+78930870 MS.gene38186:CDS
TCAGTTCTTGAACCACGAGG+TGG 0.682100 5.3:-78930882 None:intergenic
TAGGTGATATGGAACAAGAG+AGG 0.694959 5.3:+78930688 MS.gene38186:intron
ATTTCTGAAGAGGAGAGGTG+AGG 0.700060 5.3:+78931057 MS.gene38186:CDS
CAATCAGTTCTTGAACCACG+AGG 0.730363 5.3:-78930885 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTAATATGAATGAATT+GGG + chr5.3:78931000-78931019 MS.gene38186:intron 10.0%
!! TAATATTAATATGAATGAAT+TGG + chr5.3:78930999-78931018 MS.gene38186:intron 10.0%
!! AAAATAGAAAAGAAAAGAAA+AGG - chr5.3:78930510-78930529 None:intergenic 15.0%
! AAATTCAGAGAAACAAAGAA+AGG - chr5.3:78930974-78930993 None:intergenic 25.0%
AAGAAAGAAAGATTGACCAA+GGG - chr5.3:78930951-78930970 None:intergenic 30.0%
AGTTGTTCTATTAGGTGATA+TGG + chr5.3:78930677-78930696 MS.gene38186:intron 30.0%
ATAGAAGCGAAATATCCAAA+TGG + chr5.3:78930726-78930745 MS.gene38186:CDS 30.0%
ATCCAATTCATTTGTGATTG+AGG - chr5.3:78931176-78931195 None:intergenic 30.0%
TAGAAGCGAAATATCCAAAT+GGG + chr5.3:78930727-78930746 MS.gene38186:CDS 30.0%
TAGTAGAAGTTATCATGTTC+TGG - chr5.3:78930618-78930637 None:intergenic 30.0%
! ATGGATTTTGTGAAGAAGAA+TGG + chr5.3:78930322-78930341 MS.gene38186:CDS 30.0%
! GGTTTTGCAGAATGAAAATT+GGG + chr5.3:78931021-78931040 MS.gene38186:intron 30.0%
! TGTTCAATATTTGAAGCCTA+AGG + chr5.3:78930399-78930418 MS.gene38186:CDS 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG + chr5.3:78930855-78930874 MS.gene38186:CDS 30.0%
AAGATCAACTTCAGGAATGA+TGG - chr5.3:78930449-78930468 None:intergenic 35.0%
AAGCATTTCCAAAAGAGGAT+GGG - chr5.3:78931231-78931250 None:intergenic 35.0%
ACAACAAGTTCTTCATCTGT+TGG - chr5.3:78930382-78930401 None:intergenic 35.0%
AGAAAGAAAGATTGACCAAG+GGG - chr5.3:78930950-78930969 None:intergenic 35.0%
CAATTCATTTGTGATTGAGG+AGG - chr5.3:78931173-78931192 None:intergenic 35.0%
CTCCTCAATCACAAATGAAT+TGG + chr5.3:78931171-78931190 MS.gene38186:CDS 35.0%
CTTCATCTGTTGGATGAAAA+CGG - chr5.3:78930372-78930391 None:intergenic 35.0%
GAAGAAAGAAAGATTGACCA+AGG - chr5.3:78930952-78930971 None:intergenic 35.0%
TAAGCATTTCCAAAAGAGGA+TGG - chr5.3:78931232-78931251 None:intergenic 35.0%
TGAGTGTGAGTTGTTCTATT+AGG + chr5.3:78930669-78930688 MS.gene38186:intron 35.0%
! GGGTTTTGCAGAATGAAAAT+TGG + chr5.3:78931020-78931039 MS.gene38186:intron 35.0%
AAAGGGAAAGAGAAGACCTT+AGG - chr5.3:78930418-78930437 None:intergenic 40.0%
ATCTTTGCAAGTCTGATCCT+TGG + chr5.3:78930464-78930483 MS.gene38186:CDS 40.0%
GACTTGCAAAGATCAACTTC+AGG - chr5.3:78930457-78930476 None:intergenic 40.0%
TACAAACTCTGGTTACTGGA+AGG + chr5.3:78930767-78930786 MS.gene38186:CDS 40.0%
TACTGCTGAACAATGTCATG+TGG + chr5.3:78930639-78930658 MS.gene38186:intron 40.0%
TAGGTGATATGGAACAAGAG+AGG + chr5.3:78930688-78930707 MS.gene38186:intron 40.0%
TCTTTGCAAGTCTGATCCTT+GGG + chr5.3:78930465-78930484 MS.gene38186:CDS 40.0%
TTCATTTGTGATTGAGGAGG+AGG - chr5.3:78931170-78931189 None:intergenic 40.0%
! AAGAAAAGGTACAGCATACC+AGG - chr5.3:78930496-78930515 None:intergenic 40.0%
! AGTTTGTAGCTCTGTTAGGT+CGG - chr5.3:78930755-78930774 None:intergenic 40.0%
! CTCAGCTTCAAGTTCAAAAG+TGG + chr5.3:78931096-78931115 MS.gene38186:CDS 40.0%
! GAATGATGGAAGCAGGTAAA+GGG - chr5.3:78930435-78930454 None:intergenic 40.0%
! TGTGTCGCATATTTCTGAAG+AGG + chr5.3:78931047-78931066 MS.gene38186:CDS 40.0%
AAGACGACTCGTGAAGTTGT+TGG + chr5.3:78930825-78930844 MS.gene38186:CDS 45.0%
AGAAAGATTGACCAAGGGGT+TGG - chr5.3:78930946-78930965 None:intergenic 45.0%
AGCATACCAGGTAAATCCCA+AGG - chr5.3:78930484-78930503 None:intergenic 45.0%
CAATCAGTTCTTGAACCACG+AGG - chr5.3:78930888-78930907 None:intergenic 45.0%
CCTAACAGAGCTACAAACTC+TGG + chr5.3:78930756-78930775 MS.gene38186:CDS 45.0%
CTCGTGGTTCAAGAACTGAT+TGG + chr5.3:78930886-78930905 MS.gene38186:CDS 45.0%
GAGCTACAAACTCTGGTTAC+TGG + chr5.3:78930763-78930782 MS.gene38186:CDS 45.0%
TCTGATCCTTGGGATTTACC+TGG + chr5.3:78930475-78930494 MS.gene38186:CDS 45.0%
TTACTGGAAGGCAACTGGTT+TGG + chr5.3:78930779-78930798 MS.gene38186:CDS 45.0%
! AACTCACTCCCATCCTCTTT+TGG + chr5.3:78931220-78931239 MS.gene38186:CDS 45.0%
! ACTTCAGGAATGATGGAAGC+AGG - chr5.3:78930442-78930461 None:intergenic 45.0%
! ATTTCTGAAGAGGAGAGGTG+AGG + chr5.3:78931057-78931076 MS.gene38186:CDS 45.0%
! CCAGAGTTTGTAGCTCTGTT+AGG - chr5.3:78930759-78930778 None:intergenic 45.0%
! CGCATATTTCTGAAGAGGAG+AGG + chr5.3:78931052-78931071 MS.gene38186:CDS 45.0%
! GGAATGATGGAAGCAGGTAA+AGG - chr5.3:78930436-78930455 None:intergenic 45.0%
CACAGACATCGGACACAACA+TGG + chr5.3:78930573-78930592 MS.gene38186:intron 50.0%
CGAAGCACAGACACAGACAT+CGG + chr5.3:78930562-78930581 MS.gene38186:intron 50.0%
GGATGAAAACGGAAACCTGC+TGG - chr5.3:78930361-78930380 None:intergenic 50.0%
TCAGTTCTTGAACCACGAGG+TGG - chr5.3:78930885-78930904 None:intergenic 50.0%
TCTGGTTACTGGAAGGCAAC+TGG + chr5.3:78930774-78930793 MS.gene38186:CDS 50.0%
! CTGTTAGGTCGGTTCCCATT+TGG - chr5.3:78930744-78930763 None:intergenic 50.0%
GGTGAAGTGAGATTGCCAGC+AGG + chr5.3:78930343-78930362 MS.gene38186:CDS 55.0%
GGTTGGAGTGAGAGGAAGTG+AGG - chr5.3:78930929-78930948 None:intergenic 55.0%
TACAGAGGCAAACCACCTCG+TGG + chr5.3:78930870-78930889 MS.gene38186:CDS 55.0%
TTCCTCTCACTCCAACCCCT+TGG + chr5.3:78930932-78930951 MS.gene38186:CDS 55.0%
GACCAAGGGGTTGGAGTGAG+AGG - chr5.3:78930937-78930956 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 78930322 78931252 78930322 ID=MS.gene38186
chr5.3 mRNA 78930322 78931252 78930322 ID=MS.gene38186.t1;Parent=MS.gene38186
chr5.3 exon 78930322 78930496 78930322 ID=MS.gene38186.t1.exon1;Parent=MS.gene38186.t1
chr5.3 CDS 78930322 78930496 78930322 ID=cds.MS.gene38186.t1;Parent=MS.gene38186.t1
chr5.3 exon 78930691 78930953 78930691 ID=MS.gene38186.t1.exon2;Parent=MS.gene38186.t1
chr5.3 CDS 78930691 78930953 78930691 ID=cds.MS.gene38186.t1;Parent=MS.gene38186.t1
chr5.3 exon 78931031 78931252 78931031 ID=MS.gene38186.t1.exon3;Parent=MS.gene38186.t1
chr5.3 CDS 78931031 78931252 78931031 ID=cds.MS.gene38186.t1;Parent=MS.gene38186.t1
Gene Sequence

>MS.gene38186

ATGGATTTTGTGAAGAAGAATGGTGAAGTGAGATTGCCAGCAGGTTTCCGTTTTCATCCAACAGATGAAGAACTTGTTGTTCAATATTTGAAGCCTAAGGTCTTCTCTTTCCCTTTACCTGCTTCCATCATTCCTGAAGTTGATCTTTGCAAGTCTGATCCTTGGGATTTACCTGGTATGCTGTACCTTTTCTTTTCTTTTCTATTTTGTTCATTTATAATCATAACTTAATGAAGCACACGAAGCACAGACACAGACATCGGACACAACATGGACACTGACATGTTCAGACACCAGAACATGATAACTTCTACTACTACTGCTGAACAATGTCATGTGGATTAATTTGAGTGTGAGTTGTTCTATTAGGTGATATGGAACAAGAGAGGTACTTTTTCAGTAATATAGAAGCGAAATATCCAAATGGGAACCGACCTAACAGAGCTACAAACTCTGGTTACTGGAAGGCAACTGGTTTGGACAAACAAATCATGAATTCTTCGAAGACGACTCGTGAAGTTGTTGGTATGAAGAAAACTCTTGTTTTCTACAGAGGCAAACCACCTCGTGGTTCAAGAACTGATTGGATCATGCATGAATATCGCCTCACTTCCTCTCACTCCAACCCCTTGGTCAATCTTTCTTTCTTCCTTTCTTTGTTTCTCTGAATTTGTAATTAATATTAATATGAATGAATTGGGTTTTGCAGAATGAAAATTGGGTTTTGTGTCGCATATTTCTGAAGAGGAGAGGTGAGGTGAAGAAGAAGCAGAACTCAGCTTCAAGTTCAAAAGTGGTTGTTTTCTATGATTTCTTCGCAGAGAAGAAGAAAAATACTGATGCATCCTCCTCCTCAATCACAAATGAATTGGATGAACATGAAAATCAAGACAGCAGTAACTCACTCCCATCCTCTTTTGGAAATGCTTAA
Protein sequence

>MS.gene38186.t1

MDFVKKNGEVRLPAGFRFHPTDEELVVQYLKPKVFSFPLPASIIPEVDLCKSDPWDLPGDMEQERYFFSNIEAKYPNGNRPNRATNSGYWKATGLDKQIMNSSKTTREVVGMKKTLVFYRGKPPRGSRTDWIMHEYRLTSSHSNPLNENWVLCRIFLKRRGEVKKKQNSASSSKVVVFYDFFAEKKKNTDASSSSITNELDEHENQDSSNSLPSSFGNA