Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38298.t1 | XP_003597798.2 | 73.8 | 420 | 96 | 4 | 1 | 416 | 1 | 410 | 5.70E-139 | 504.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38298.t1 | Q5KQI4 | 43.1 | 281 | 145 | 8 | 4 | 279 | 6 | 276 | 6.0e-44 | 179.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38298.t1 | G7IMD4 | 73.8 | 420 | 96 | 4 | 1 | 416 | 1 | 410 | 4.1e-139 | 504.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene38298.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38298.t1 | MTR_2g102450 | 80.000 | 420 | 70 | 4 | 1 | 416 | 1 | 410 | 0.0 | 618 |
MS.gene38298.t1 | MTR_2g102450 | 78.299 | 341 | 60 | 4 | 80 | 416 | 26 | 356 | 2.63e-171 | 483 |
MS.gene38298.t1 | MTR_4g008310 | 88.636 | 176 | 19 | 1 | 56 | 230 | 129 | 304 | 1.70e-98 | 297 |
MS.gene38298.t1 | MTR_3g101520 | 40.351 | 228 | 131 | 2 | 9 | 236 | 5 | 227 | 3.80e-46 | 159 |
MS.gene38298.t1 | MTR_3g101520 | 39.912 | 228 | 124 | 1 | 9 | 236 | 5 | 219 | 4.91e-46 | 158 |
MS.gene38298.t1 | MTR_4g101970 | 34.252 | 254 | 110 | 11 | 183 | 396 | 51 | 287 | 1.10e-19 | 90.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38298.t1 | AT5G58280 | 43.307 | 254 | 114 | 4 | 12 | 238 | 5 | 255 | 4.18e-56 | 187 |
MS.gene38298.t1 | AT5G58280 | 43.922 | 255 | 110 | 5 | 12 | 238 | 5 | 254 | 1.64e-55 | 186 |
MS.gene38298.t1 | AT5G58280 | 42.982 | 228 | 119 | 4 | 12 | 238 | 5 | 222 | 1.22e-49 | 169 |
MS.gene38298.t1 | AT3G19184 | 39.841 | 251 | 126 | 4 | 12 | 254 | 8 | 241 | 1.39e-44 | 156 |
MS.gene38298.t1 | AT3G19184 | 39.841 | 251 | 126 | 4 | 12 | 254 | 8 | 241 | 1.52e-44 | 156 |
MS.gene38298.t1 | AT5G42700 | 39.301 | 229 | 119 | 5 | 10 | 233 | 7 | 220 | 1.48e-41 | 147 |
MS.gene38298.t1 | AT5G42700 | 38.674 | 181 | 98 | 3 | 55 | 233 | 6 | 175 | 5.93e-33 | 122 |
Find 65 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAACATTATTCTTTGATTT+TGG | 0.151715 | 4.3:+87020378 | None:intergenic |
ATACGAAGGAACTGGGTTTC+TGG | 0.220802 | 4.3:+87020329 | None:intergenic |
GGTTGAAGCAGCAAGATTTA+AGG | 0.234558 | 4.3:-87019350 | MS.gene38298:intron |
TTCCTTTGATTTAACAGTTT+TGG | 0.240573 | 4.3:+87017964 | None:intergenic |
TCGAGATGTGCATCCTCTTT+TGG | 0.268576 | 4.3:+87017872 | None:intergenic |
TTTAGATTCTTTGATTGCTT+TGG | 0.273612 | 4.3:+87018063 | None:intergenic |
TGCGATTTCAGTCAATGTTT+TGG | 0.279142 | 4.3:+87020522 | None:intergenic |
TTGGACTTTGGCTCAAGTTT+AGG | 0.284818 | 4.3:+87017983 | None:intergenic |
AGCCGCTTCATACTTGTTAC+TGG | 0.292196 | 4.3:+87021455 | None:intergenic |
TTAAATCAAAGGAAGCTTAT+AGG | 0.293006 | 4.3:-87017955 | MS.gene38298:CDS |
TTTACCTTGGATTTCTTTGC+TGG | 0.294171 | 4.3:+87020496 | None:intergenic |
TCGAAGACTGCAAATTGATT+TGG | 0.297643 | 4.3:+87019734 | None:intergenic |
GAAGATTCTTGTTAAAATAA+TGG | 0.308039 | 4.3:-87017753 | MS.gene38298:CDS |
GAAGGTGATGTATGTGAAAT+TGG | 0.313037 | 4.3:-87017794 | MS.gene38298:CDS |
ATCAAAGAATAATGTTGTTC+TGG | 0.322961 | 4.3:-87020373 | MS.gene38298:CDS |
GGCAACTTTGTAGCTGCCTC+TGG | 0.368043 | 4.3:+87017839 | None:intergenic |
CATGTTCTTTCTTCTTGCCT+AGG | 0.381909 | 4.3:+87017723 | None:intergenic |
ATTTGCATTGAAACATAAAC+TGG | 0.400811 | 4.3:-87019401 | MS.gene38298:CDS |
CAAGAAGAAAGAACATGTTC+AGG | 0.404310 | 4.3:-87017717 | MS.gene38298:CDS |
TCTTCACGATACGAAGGAAC+TGG | 0.423062 | 4.3:+87020321 | None:intergenic |
CACTTATCAAGTCAATGGTT+TGG | 0.424323 | 4.3:-87019705 | MS.gene38298:CDS |
TTCATACTTGTTACTGGAAG+TGG | 0.425368 | 4.3:+87021461 | None:intergenic |
TCAAGAAAGAAAGCGTGCTT+TGG | 0.426683 | 4.3:-87019773 | MS.gene38298:CDS |
AAAAGAAGAAAGCGATGCTT+TGG | 0.444588 | 4.3:-87018110 | MS.gene38298:CDS |
ACCTTCCACAGTTGCGGAAG+AGG | 0.453437 | 4.3:-87019963 | MS.gene38298:CDS |
TCCATCACTTATCAAGTCAA+TGG | 0.461188 | 4.3:-87019710 | MS.gene38298:CDS |
GTTTGGTCTCACGTTTATAG+AGG | 0.467915 | 4.3:-87019688 | MS.gene38298:CDS |
CAAGGTCAAGTTCATCATCA+TGG | 0.471764 | 4.3:-87019939 | MS.gene38298:CDS |
ACCTCTTCCGCAACTGTGGA+AGG | 0.475917 | 4.3:+87019962 | None:intergenic |
GGAAAACAAGAAGAGGTTTG+AGG | 0.478514 | 4.3:-87021415 | MS.gene38298:intron |
AAAGAAAACTAGAATGCAAA+AGG | 0.490045 | 4.3:-87018017 | MS.gene38298:CDS |
AGAAGAAAGCGATGCTTTGG+TGG | 0.493049 | 4.3:-87018107 | MS.gene38298:CDS |
ACCATTGACTTGATAAGTGA+TGG | 0.497922 | 4.3:+87019709 | None:intergenic |
ATTTGAAAATATAGATGAAG+AGG | 0.499410 | 4.3:-87018137 | MS.gene38298:CDS |
AAGGTCAAGTTCATCATCAT+GGG | 0.503820 | 4.3:-87019938 | MS.gene38298:CDS |
TGTTCCTCGCAAAATCTCCT+TGG | 0.505957 | 4.3:+87019529 | None:intergenic |
ATAATGTTGTTCTGGAACCT+AGG | 0.507456 | 4.3:-87020365 | MS.gene38298:CDS |
AGCAAGAAAACTGCGCTTAG+TGG | 0.510768 | 4.3:-87019436 | MS.gene38298:CDS |
AAACTGCGCTTAGTGGTGGC+TGG | 0.513224 | 4.3:-87019429 | MS.gene38298:CDS |
GTCCAAAACTGTTAAATCAA+AGG | 0.523876 | 4.3:-87017966 | MS.gene38298:CDS |
CACAGTTGCGGAAGAGGTCA+AGG | 0.544125 | 4.3:-87019957 | MS.gene38298:CDS |
AGCGATGCTTTGGTGGAAGA+AGG | 0.546631 | 4.3:-87018100 | MS.gene38298:CDS |
TACTGCAGTTGAGCCAAAAG+AGG | 0.549920 | 4.3:-87017885 | MS.gene38298:CDS |
AAAATAATGGAGGCTGACCT+AGG | 0.559343 | 4.3:-87017740 | MS.gene38298:CDS |
GCACAGACCTTCCACAGTTG+CGG | 0.564774 | 4.3:-87019969 | MS.gene38298:CDS |
GCGTGCTTTGGATGCTGCAG+AGG | 0.570639 | 4.3:-87019761 | MS.gene38298:CDS |
CTTGACCTCTTCCGCAACTG+TGG | 0.570829 | 4.3:+87019958 | None:intergenic |
TTGAAACATAAACTGGATGA+TGG | 0.585314 | 4.3:-87019394 | MS.gene38298:CDS |
CTTCACGATACGAAGGAACT+GGG | 0.585948 | 4.3:+87020322 | None:intergenic |
TCAGTTACGCTTACGTTGCG+AGG | 0.594424 | 4.3:-87019825 | MS.gene38298:intron |
GTGTGTAAGCAGATGGCAAA+CGG | 0.598841 | 4.3:-87021489 | None:intergenic |
GACTTGAGGAAAACAAGAAG+AGG | 0.599382 | 4.3:-87021422 | MS.gene38298:CDS |
CAAGTTCATCATCATGGGGA+AGG | 0.599718 | 4.3:-87019933 | MS.gene38298:intron |
AGTTCCTTCGTATCGTGAAG+AGG | 0.609998 | 4.3:-87020319 | MS.gene38298:intron |
AAGAAAACTGCGCTTAGTGG+TGG | 0.610549 | 4.3:-87019433 | MS.gene38298:CDS |
TTCCAGTAACAAGTATGAAG+CGG | 0.611515 | 4.3:-87021457 | MS.gene38298:CDS |
ATCTAAAACTGTGAAACCAA+AGG | 0.619114 | 4.3:-87018047 | MS.gene38298:CDS |
GATTCTTGTTAAAATAATGG+AGG | 0.623792 | 4.3:-87017750 | MS.gene38298:CDS |
AAGTCCAGCAAAGAAATCCA+AGG | 0.643226 | 4.3:-87020500 | MS.gene38298:intron |
CTGGCACGAGAAGAGCACCT+AGG | 0.654582 | 4.3:+87020348 | None:intergenic |
AATTGGTGACTTACGTAATG+CGG | 0.677990 | 4.3:-87017777 | MS.gene38298:CDS |
GGCTAGAGAACAAAGACTTG+AGG | 0.682861 | 4.3:-87021436 | MS.gene38298:CDS |
CTTACCTCTTCACGATACGA+AGG | 0.683573 | 4.3:+87020315 | None:intergenic |
AGGTCAAGTTCATCATCATG+GGG | 0.691621 | 4.3:-87019937 | MS.gene38298:CDS |
TCTCGAAACTGTGAAACCAG+AGG | 0.723018 | 4.3:-87017855 | MS.gene38298:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GAAAAATATAAATTTATTGA+AGG | - | chr4.3:87020604-87020623 | MS.gene38298:intron | 10.0% |
!!! | AAACTTACAATTTTTTAAAT+CGG | - | chr4.3:87018608-87018627 | MS.gene38298:intron | 10.0% |
!!! | ATATATTATCTTTATTTTGT+AGG | - | chr4.3:87019527-87019546 | MS.gene38298:CDS | 10.0% |
!!! | TATATTATCTTTATTTTGTA+GGG | - | chr4.3:87019528-87019547 | MS.gene38298:CDS | 10.0% |
!! | AATTTATTGAAGGTTAATTT+AGG | - | chr4.3:87020614-87020633 | MS.gene38298:intron | 15.0% |
!! | CATATGAATATAATTATGTT+AGG | + | chr4.3:87020874-87020893 | None:intergenic | 15.0% |
!! | CTAACATAATTATATTCATA+TGG | - | chr4.3:87020872-87020891 | MS.gene38298:intron | 15.0% |
!! | GATATTAAAATATTGCAAAA+AGG | + | chr4.3:87020045-87020064 | None:intergenic | 15.0% |
!!! | AAATTGAAATTTTATTGACA+TGG | - | chr4.3:87019225-87019244 | MS.gene38298:intron | 15.0% |
!! | AAAAAATTGTAAGTTTACCT+TGG | + | chr4.3:87018604-87018623 | None:intergenic | 20.0% |
!! | AAAATCATAAAAAACCTTTG+AGG | - | chr4.3:87018357-87018376 | MS.gene38298:intron | 20.0% |
!! | ATTTGAAAATATAGATGAAG+AGG | - | chr4.3:87020947-87020966 | MS.gene38298:intron | 20.0% |
!! | GAAGATTCTTGTTAAAATAA+TGG | - | chr4.3:87021331-87021350 | MS.gene38298:intron | 20.0% |
!! | TATTTCACTTTATTACAGTT+AGG | - | chr4.3:87019093-87019112 | MS.gene38298:intron | 20.0% |
!! | TCCAAAAATTGACTATAAAA+TGG | - | chr4.3:87019581-87019600 | MS.gene38298:intron | 20.0% |
!! | TTGCTTTATACTTTATATCA+TGG | - | chr4.3:87018247-87018266 | MS.gene38298:intron | 20.0% |
!! | TTTCATGTTAATTGAAATCA+AGG | - | chr4.3:87017801-87017820 | MS.gene38298:CDS | 20.0% |
!!! | AAATCAAGGTATTTAAATAG+TGG | - | chr4.3:87017815-87017834 | MS.gene38298:CDS | 20.0% |
!!! | AAATTTTATTGACATGGTTA+TGG | - | chr4.3:87019231-87019250 | MS.gene38298:intron | 20.0% |
!!! | AATTTTATTGACATGGTTAT+GGG | - | chr4.3:87019232-87019251 | MS.gene38298:intron | 20.0% |
!!! | ACAACATTATTCTTTGATTT+TGG | + | chr4.3:87018709-87018728 | None:intergenic | 20.0% |
!!! | ACCATTTTAGAATTTGAAAA+GGG | + | chr4.3:87020266-87020285 | None:intergenic | 20.0% |
!!! | ACCATTTTATAGTCAATTTT+TGG | + | chr4.3:87019585-87019604 | None:intergenic | 20.0% |
!!! | ATAATTCTTTTTGTTTCTAC+TGG | + | chr4.3:87020820-87020839 | None:intergenic | 20.0% |
!!! | ATTAGTTTGAGAAACTTAAA+TGG | + | chr4.3:87020518-87020537 | None:intergenic | 20.0% |
!!! | TAAGTCATGGTTTTAAATTA+TGG | - | chr4.3:87018060-87018079 | MS.gene38298:CDS | 20.0% |
!!! | TACCATTTTAGAATTTGAAA+AGG | + | chr4.3:87020267-87020286 | None:intergenic | 20.0% |
! | AAAGAAAACTAGAATGCAAA+AGG | - | chr4.3:87021067-87021086 | MS.gene38298:intron | 25.0% |
! | AAAGAAATAGTTGTCAAATG+TGG | - | chr4.3:87017860-87017879 | MS.gene38298:CDS | 25.0% |
! | AACAAAAAGAATTATATGCC+AGG | - | chr4.3:87020825-87020844 | MS.gene38298:intron | 25.0% |
! | AAGAAGAAACTCAATATCAA+AGG | + | chr4.3:87020007-87020026 | None:intergenic | 25.0% |
! | AATATCTACTAGGAATATGT+TGG | - | chr4.3:87018900-87018919 | MS.gene38298:intron | 25.0% |
! | ACATTAAAGAATGAACAACA+AGG | + | chr4.3:87019462-87019481 | None:intergenic | 25.0% |
! | ATAGTGCAAAAATATCTACT+AGG | - | chr4.3:87018890-87018909 | MS.gene38298:intron | 25.0% |
! | ATCAAAGAATAATGTTGTTC+TGG | - | chr4.3:87018711-87018730 | MS.gene38298:intron | 25.0% |
! | ATCTTCAAATTCAACAATCA+AGG | + | chr4.3:87019019-87019038 | None:intergenic | 25.0% |
! | ATTTGCATTGAAACATAAAC+TGG | - | chr4.3:87019683-87019702 | MS.gene38298:CDS | 25.0% |
! | CAGCTAACAATTACTATATT+TGG | + | chr4.3:87020181-87020200 | None:intergenic | 25.0% |
! | CCAAAATAGTTGTTATAAGT+AGG | - | chr4.3:87020407-87020426 | MS.gene38298:intron | 25.0% |
! | CTATATATACTGCTCAATAT+AGG | + | chr4.3:87018175-87018194 | None:intergenic | 25.0% |
! | GATTCTTGTTAAAATAATGG+AGG | - | chr4.3:87021334-87021353 | MS.gene38298:intron | 25.0% |
! | GGAAAAGGAATAATTTCAAA+TGG | - | chr4.3:87019934-87019953 | MS.gene38298:CDS | 25.0% |
! | TAAGATTATCTCAAACAAAG+TGG | + | chr4.3:87017701-87017720 | None:intergenic | 25.0% |
! | TATATATGCATGTGTATCTA+AGG | - | chr4.3:87017776-87017795 | MS.gene38298:CDS | 25.0% |
! | TATATCATGGCTATAAATTG+TGG | - | chr4.3:87018260-87018279 | MS.gene38298:intron | 25.0% |
! | TATCTTCAAAAGTTATCTCA+TGG | + | chr4.3:87020222-87020241 | None:intergenic | 25.0% |
! | TGACCAAATTAATTCTTACA+AGG | - | chr4.3:87020093-87020112 | MS.gene38298:intron | 25.0% |
! | TTAAATCAAAGGAAGCTTAT+AGG | - | chr4.3:87021129-87021148 | MS.gene38298:intron | 25.0% |
! | TTTAGATTCTTTGATTGCTT+TGG | + | chr4.3:87021024-87021043 | None:intergenic | 25.0% |
! | TTTATACATACTACTCAATC+TGG | + | chr4.3:87017970-87017989 | None:intergenic | 25.0% |
!! | AAGCCTTGTAAGAATTAATT+TGG | + | chr4.3:87020099-87020118 | None:intergenic | 25.0% |
!! | AATTCTCATACTTTTGTCTT+AGG | + | chr4.3:87018940-87018959 | None:intergenic | 25.0% |
!! | ATTCTCATACTTTTGTCTTA+GGG | + | chr4.3:87018939-87018958 | None:intergenic | 25.0% |
!! | CAATTACTATATTTGGAACT+TGG | + | chr4.3:87020174-87020193 | None:intergenic | 25.0% |
!! | CCTACTTATAACAACTATTT+TGG | + | chr4.3:87020410-87020429 | None:intergenic | 25.0% |
!! | TTTTCCTCAAAAACAAATCA+TGG | + | chr4.3:87019920-87019939 | None:intergenic | 25.0% |
!!! | AAAGTTTTAAGCCATCATTA+AGG | + | chr4.3:87017746-87017765 | None:intergenic | 25.0% |
!!! | ACCCTTTTCAAATTCTAAAA+TGG | - | chr4.3:87020262-87020281 | MS.gene38298:intron | 25.0% |
!!! | ATGATTTGTTTTTGAGGAAA+AGG | - | chr4.3:87019919-87019938 | MS.gene38298:intron | 25.0% |
!!! | TACTTTTAGGGTTGAAATTA+CGG | - | chr4.3:87020466-87020485 | MS.gene38298:intron | 25.0% |
!!! | TGACTATAAAATGGTTTTAG+AGG | - | chr4.3:87019590-87019609 | MS.gene38298:intron | 25.0% |
!!! | TTCCTTTGATTTAACAGTTT+TGG | + | chr4.3:87021123-87021142 | None:intergenic | 25.0% |
AAAAAGAATTATATGCCAGG+TGG | - | chr4.3:87020828-87020847 | MS.gene38298:intron | 30.0% | |
AAGAAAAAGAAGGCAAAAGA+AGG | - | chr4.3:87021272-87021291 | MS.gene38298:intron | 30.0% | |
ACTATCATGTTGGAAAAGAA+TGG | + | chr4.3:87019045-87019064 | None:intergenic | 30.0% | |
AGAAACATCAAAAACCTTGA+TGG | - | chr4.3:87017908-87017927 | MS.gene38298:CDS | 30.0% | |
AGAACATCTAAGTTCATTAG+TGG | + | chr4.3:87019964-87019983 | None:intergenic | 30.0% | |
ATAGTAATTGTTAGCTGTGA+GGG | - | chr4.3:87020184-87020203 | MS.gene38298:intron | 30.0% | |
ATTTGCAACCAAAAAACAAG+TGG | + | chr4.3:87020744-87020763 | None:intergenic | 30.0% | |
CTAAATCCTTGAGAACAAAA+GGG | + | chr4.3:87018527-87018546 | None:intergenic | 30.0% | |
GACATATCACTAGTAAATGT+GGG | + | chr4.3:87020388-87020407 | None:intergenic | 30.0% | |
GATAATAACTGATATCAGCT+TGG | - | chr4.3:87019842-87019861 | MS.gene38298:intron | 30.0% | |
GATATAGTTTGAACTTTGCA+AGG | + | chr4.3:87018803-87018822 | None:intergenic | 30.0% | |
GTCCAAAACTGTTAAATCAA+AGG | - | chr4.3:87021118-87021137 | MS.gene38298:intron | 30.0% | |
TAAATCCTTGAGAACAAAAG+GGG | + | chr4.3:87018526-87018545 | None:intergenic | 30.0% | |
TATAGTAATTGTTAGCTGTG+AGG | - | chr4.3:87020183-87020202 | MS.gene38298:intron | 30.0% | |
TCATTTGTGTACCTTAATGA+TGG | - | chr4.3:87017732-87017751 | MS.gene38298:CDS | 30.0% | |
TTAAGCGATCTTTGATATCA+TGG | - | chr4.3:87018286-87018305 | MS.gene38298:intron | 30.0% | |
TTGAAACATAAACTGGATGA+TGG | - | chr4.3:87019690-87019709 | MS.gene38298:CDS | 30.0% | |
TTTGCAACCAAAAAACAAGT+GGG | + | chr4.3:87020743-87020762 | None:intergenic | 30.0% | |
! | ATCTAAAACTGTGAAACCAA+AGG | - | chr4.3:87021037-87021056 | MS.gene38298:intron | 30.0% |
! | GGAAACTTGTTCTATAAGAA+AGG | - | chr4.3:87020575-87020594 | MS.gene38298:intron | 30.0% |
! | GGATAATAGTTGTGATAATG+AGG | - | chr4.3:87018394-87018413 | MS.gene38298:intron | 30.0% |
! | GGTAGTTTGCATAAATCTAT+AGG | + | chr4.3:87018426-87018445 | None:intergenic | 30.0% |
! | TGATGCAGTAGTTTTTGAAT+TGG | - | chr4.3:87019713-87019732 | MS.gene38298:CDS | 30.0% |
! | TTTGCCTTCTTTTTCTTGTT+TGG | + | chr4.3:87021269-87021288 | None:intergenic | 30.0% |
! | TTTTAAATTATGGTCGAGTC+GGG | - | chr4.3:87018070-87018089 | MS.gene38298:CDS | 30.0% |
!! | ACTTTTGAAGATAGCTTTTG+TGG | - | chr4.3:87020229-87020248 | MS.gene38298:intron | 30.0% |
!! | CTTTGAAGTTAAAAGAGAGT+TGG | + | chr4.3:87019783-87019802 | None:intergenic | 30.0% |
!! | CTTTTGAAGATAGCTTTTGT+GGG | - | chr4.3:87020230-87020249 | MS.gene38298:intron | 30.0% |
!! | GTTTTAAATTATGGTCGAGT+CGG | - | chr4.3:87018069-87018088 | MS.gene38298:CDS | 30.0% |
!! | TAAATCGGTTTTACTCTGTA+AGG | - | chr4.3:87018623-87018642 | MS.gene38298:intron | 30.0% |
!!! | AATGGTTTTAGAGGATGAAA+AGG | - | chr4.3:87019599-87019618 | MS.gene38298:intron | 30.0% |
!!! | AGCTTTTGGAGTTTACTTTT+AGG | - | chr4.3:87020453-87020472 | MS.gene38298:intron | 30.0% |
!!! | ATGGTTTTAGAGGATGAAAA+GGG | - | chr4.3:87019600-87019619 | MS.gene38298:intron | 30.0% |
!!! | CAACTCTCTTTTAACTTCAA+AGG | - | chr4.3:87019781-87019800 | MS.gene38298:CDS | 30.0% |
!!! | GATTTAACAGTTTTGGACTT+TGG | + | chr4.3:87021116-87021135 | None:intergenic | 30.0% |
!!! | GCTTTTGGAGTTTACTTTTA+GGG | - | chr4.3:87020454-87020473 | MS.gene38298:intron | 30.0% |
!!! | GCTTTTTTGATTTCATTCAG+TGG | + | chr4.3:87019285-87019304 | None:intergenic | 30.0% |
!!! | TTGTCCATGATTTGTTTTTG+AGG | - | chr4.3:87019913-87019932 | MS.gene38298:intron | 30.0% |
AAAAGAAGAAAGCGATGCTT+TGG | - | chr4.3:87020974-87020993 | MS.gene38298:intron | 35.0% | |
AAAGAGAGTTGGATGAGAAT+TGG | + | chr4.3:87019772-87019791 | None:intergenic | 35.0% | |
AACAATCAAGGATTTCTCGA+AGG | + | chr4.3:87019007-87019026 | None:intergenic | 35.0% | |
AACCATGACTTAAACCAACA+CGG | + | chr4.3:87018052-87018071 | None:intergenic | 35.0% | |
AAGGTCAAGTTCATCATCAT+GGG | - | chr4.3:87019146-87019165 | MS.gene38298:intron | 35.0% | |
ACGATTCTGCACAAAGAAAT+AGG | + | chr4.3:87018677-87018696 | None:intergenic | 35.0% | |
AGAATTCAAAACTTCCGTGT+TGG | - | chr4.3:87018035-87018054 | MS.gene38298:CDS | 35.0% | |
AGAGAAAAATCACACAACAC+TGG | + | chr4.3:87018983-87019002 | None:intergenic | 35.0% | |
CAACTATGTTGGCAATATCA+AGG | + | chr4.3:87018098-87018117 | None:intergenic | 35.0% | |
CAAGAAGAAAGAACATGTTC+AGG | - | chr4.3:87021367-87021386 | MS.gene38298:intron | 35.0% | |
CACTTATCAAGTCAATGGTT+TGG | - | chr4.3:87019379-87019398 | MS.gene38298:CDS | 35.0% | |
CCTAAATCCTTGAGAACAAA+AGG | + | chr4.3:87018528-87018547 | None:intergenic | 35.0% | |
CGATTCTGCACAAAGAAATA+GGG | + | chr4.3:87018676-87018695 | None:intergenic | 35.0% | |
CTCAAGAAAGAGGAATATGT+TGG | - | chr4.3:87018859-87018878 | MS.gene38298:intron | 35.0% | |
GAAGGTGATGTATGTGAAAT+TGG | - | chr4.3:87021290-87021309 | MS.gene38298:intron | 35.0% | |
GGACATATCACTAGTAAATG+TGG | + | chr4.3:87020389-87020408 | None:intergenic | 35.0% | |
GTTGCCAAACAAGAAAAAGA+AGG | - | chr4.3:87021262-87021281 | MS.gene38298:intron | 35.0% | |
TAGTAATTGTTAGCTGTGAG+GGG | - | chr4.3:87020185-87020204 | MS.gene38298:intron | 35.0% | |
TATAGAACAAGTTTCCCTGA+GGG | + | chr4.3:87020571-87020590 | None:intergenic | 35.0% | |
TCACAACTATTATCCACATG+TGG | + | chr4.3:87018389-87018408 | None:intergenic | 35.0% | |
TCCATCACTTATCAAGTCAA+TGG | - | chr4.3:87019374-87019393 | MS.gene38298:CDS | 35.0% | |
TCGAAGACTGCAAATTGATT+TGG | + | chr4.3:87019353-87019372 | None:intergenic | 35.0% | |
TGAGTTTCTTCTTGAGTTCA+AGG | - | chr4.3:87020014-87020033 | MS.gene38298:intron | 35.0% | |
TTATAGAACAAGTTTCCCTG+AGG | + | chr4.3:87020572-87020591 | None:intergenic | 35.0% | |
TTCCAGTAACAAGTATGAAG+CGG | - | chr4.3:87017627-87017646 | MS.gene38298:CDS | 35.0% | |
TTCCTGCAAAACTATCATGT+TGG | + | chr4.3:87019055-87019074 | None:intergenic | 35.0% | |
TTTACCTTGGATTTCTTTGC+TGG | + | chr4.3:87018591-87018610 | None:intergenic | 35.0% | |
! | AATATCCCCTTTTGTTCTCA+AGG | - | chr4.3:87018518-87018537 | MS.gene38298:intron | 35.0% |
! | AATTGGTGACTTACGTAATG+CGG | - | chr4.3:87021307-87021326 | MS.gene38298:intron | 35.0% |
! | ATAACCCGCAACAACATTTT+AGG | + | chr4.3:87017939-87017958 | None:intergenic | 35.0% |
! | CCTCTCTTTCTGAAAAACTT+CGG | + | chr4.3:87021476-87021495 | None:intergenic | 35.0% |
! | CCTTTTGTTCTCAAGGATTT+AGG | - | chr4.3:87018525-87018544 | MS.gene38298:intron | 35.0% |
! | CTCACGTTTATAGAGGTTTT+TGG | - | chr4.3:87019403-87019422 | MS.gene38298:CDS | 35.0% |
! | GTTTTCTTTGTAGCTTCCTT+TGG | + | chr4.3:87021056-87021075 | None:intergenic | 35.0% |
! | TGCGATTTCAGTCAATGTTT+TGG | + | chr4.3:87018565-87018584 | None:intergenic | 35.0% |
! | TTCATACTTGTTACTGGAAG+TGG | + | chr4.3:87017626-87017645 | None:intergenic | 35.0% |
!! | ACCATTGACTTGATAAGTGA+TGG | + | chr4.3:87019378-87019397 | None:intergenic | 35.0% |
!! | ATAATGTTGTTCTGGAACCT+AGG | - | chr4.3:87018719-87018738 | MS.gene38298:intron | 35.0% |
!! | TTATTTTGTAGGGTCTTCCA+AGG | - | chr4.3:87019538-87019557 | MS.gene38298:CDS | 35.0% |
!! | TTCCAACATGATAGTTTTGC+AGG | - | chr4.3:87019050-87019069 | MS.gene38298:intron | 35.0% |
!!! | ATTTAGCTCTAGAGTTTTGC+AGG | - | chr4.3:87018957-87018976 | MS.gene38298:intron | 35.0% |
!!! | CGTTTATAGAGGTTTTTGGT+TGG | - | chr4.3:87019407-87019426 | MS.gene38298:CDS | 35.0% |
!!! | TATAGAGGTTTTTGGTTGGT+AGG | - | chr4.3:87019411-87019430 | MS.gene38298:CDS | 35.0% |
AACCAAAAAACAAGTGGGTC+TGG | + | chr4.3:87020738-87020757 | None:intergenic | 40.0% | |
AAGTCCAGCAAAGAAATCCA+AGG | - | chr4.3:87018584-87018603 | MS.gene38298:intron | 40.0% | |
AATCTGCTGCAGAAAAACCT+CGG | - | chr4.3:87021438-87021457 | MS.gene38298:CDS | 40.0% | |
AGGTCAAGTTCATCATCATG+GGG | - | chr4.3:87019147-87019166 | MS.gene38298:intron | 40.0% | |
ATAGAACAAGTTTCCCTGAG+GGG | + | chr4.3:87020570-87020589 | None:intergenic | 40.0% | |
ATATCATCATTCGATCCACC+TGG | + | chr4.3:87020846-87020865 | None:intergenic | 40.0% | |
ATCAGTCGATAGTGATAGAC+AGG | - | chr4.3:87019820-87019839 | MS.gene38298:CDS | 40.0% | |
CAAGGTCAAGTTCATCATCA+TGG | - | chr4.3:87019145-87019164 | MS.gene38298:intron | 40.0% | |
CATGTTCTTTCTTCTTGCCT+AGG | + | chr4.3:87021364-87021383 | None:intergenic | 40.0% | |
GACTTGAGGAAAACAAGAAG+AGG | - | chr4.3:87017662-87017681 | MS.gene38298:CDS | 40.0% | |
GCCAAAGTTGACAACTATGT+TGG | + | chr4.3:87018109-87018128 | None:intergenic | 40.0% | |
GCCAACATAGTTGTCAACTT+TGG | - | chr4.3:87018105-87018124 | MS.gene38298:CDS | 40.0% | |
GGAAAACAAGAAGAGGTTTG+AGG | - | chr4.3:87017669-87017688 | MS.gene38298:CDS | 40.0% | |
GGTTGAAGCAGCAAGATTTA+AGG | - | chr4.3:87019734-87019753 | MS.gene38298:CDS | 40.0% | |
GTTTGGTCTCACGTTTATAG+AGG | - | chr4.3:87019396-87019415 | MS.gene38298:CDS | 40.0% | |
TGTGGCCTAAAATGTTGTTG+CGG | - | chr4.3:87017931-87017950 | MS.gene38298:CDS | 40.0% | |
! | AAAATAATGGAGGCTGACCT+AGG | - | chr4.3:87021344-87021363 | MS.gene38298:intron | 40.0% |
! | ATTTTCCAAATTGCCCCTCA+GGG | - | chr4.3:87020554-87020573 | MS.gene38298:intron | 40.0% |
! | GTCTATCACTATCGACTGAT+CGG | + | chr4.3:87019820-87019839 | None:intergenic | 40.0% |
! | GTTGTCAAATGTGGTTGATG+TGG | - | chr4.3:87017869-87017888 | MS.gene38298:CDS | 40.0% |
! | TAAGCGCAGTTTTCTTGCTA+AGG | + | chr4.3:87019647-87019666 | None:intergenic | 40.0% |
! | TATCAGCTTGGTGAGAATGT+TGG | - | chr4.3:87019854-87019873 | MS.gene38298:intron | 40.0% |
! | TATTTTCCAAATTGCCCCTC+AGG | - | chr4.3:87020553-87020572 | MS.gene38298:intron | 40.0% |
! | TCAAGAAAGAAAGCGTGCTT+TGG | - | chr4.3:87019311-87019330 | MS.gene38298:intron | 40.0% |
! | TCTATCACTATCGACTGATC+GGG | + | chr4.3:87019819-87019838 | None:intergenic | 40.0% |
! | TTGGACTTTGGCTCAAGTTT+AGG | + | chr4.3:87021104-87021123 | None:intergenic | 40.0% |
! | TTGGTGAGAATGTTGGTTGA+TGG | - | chr4.3:87019861-87019880 | MS.gene38298:intron | 40.0% |
!! | CATCAAAAACCTTGATGGTG+TGG | - | chr4.3:87017913-87017932 | MS.gene38298:CDS | 40.0% |
!! | CCGAAGTTTTTCAGAAAGAG+AGG | - | chr4.3:87021473-87021492 | MS.gene38298:CDS | 40.0% |
!! | GCAATGTTCTCTAAAACTGC+AGG | - | chr4.3:87020712-87020731 | MS.gene38298:intron | 40.0% |
!! | TTCCGTGTTGGTTTAAGTCA+TGG | - | chr4.3:87018047-87018066 | MS.gene38298:CDS | 40.0% |
!!! | CTAGCTTTTGAGGTTGAGTT+AGG | - | chr4.3:87020148-87020167 | MS.gene38298:intron | 40.0% |
AAAGACTACGCTAGTGGTGA+GGG | + | chr4.3:87018454-87018473 | None:intergenic | 45.0% | |
AAGAAAACTGCGCTTAGTGG+TGG | - | chr4.3:87019651-87019670 | MS.gene38298:intron | 45.0% | |
ACCTGCACGAATGAATTGTC+AGG | + | chr4.3:87020912-87020931 | None:intergenic | 45.0% | |
ACCTTCGTACTGAGTGTGAA+AGG | - | chr4.3:87020349-87020368 | MS.gene38298:CDS | 45.0% | |
AGAAGAAAGCGATGCTTTGG+TGG | - | chr4.3:87020977-87020996 | MS.gene38298:intron | 45.0% | |
AGACACAAAGACTACGCTAG+TGG | + | chr4.3:87018460-87018479 | None:intergenic | 45.0% | |
AGCAAGAAAACTGCGCTTAG+TGG | - | chr4.3:87019648-87019667 | MS.gene38298:intron | 45.0% | |
AGTTCCTTCGTATCGTGAAG+AGG | - | chr4.3:87018765-87018784 | MS.gene38298:intron | 45.0% | |
ATACGAAGGAACTGGGTTTC+TGG | + | chr4.3:87018758-87018777 | None:intergenic | 45.0% | |
CAAGTTCATCATCATGGGGA+AGG | - | chr4.3:87019151-87019170 | MS.gene38298:intron | 45.0% | |
CTTACCTCTTCACGATACGA+AGG | + | chr4.3:87018772-87018791 | None:intergenic | 45.0% | |
CTTCACGATACGAAGGAACT+GGG | + | chr4.3:87018765-87018784 | None:intergenic | 45.0% | |
GGCTAGAGAACAAAGACTTG+AGG | - | chr4.3:87017648-87017667 | MS.gene38298:CDS | 45.0% | |
GGTCATATCTCTAGCTGATG+TGG | + | chr4.3:87020078-87020097 | None:intergenic | 45.0% | |
GTGACTCTGACTCAAGAAAG+AGG | - | chr4.3:87018849-87018868 | MS.gene38298:intron | 45.0% | |
GTGGCCTAAAATGTTGTTGC+GGG | - | chr4.3:87017932-87017951 | MS.gene38298:CDS | 45.0% | |
TACTGCAGTTGAGCCAAAAG+AGG | - | chr4.3:87021199-87021218 | MS.gene38298:intron | 45.0% | |
TCAACCTCAAAAGCTAGCAG+AGG | + | chr4.3:87020145-87020164 | None:intergenic | 45.0% | |
TCACACTCAGTACGAAGGTT+GGG | + | chr4.3:87020348-87020367 | None:intergenic | 45.0% | |
TCCTGACAATTCATTCGTGC+AGG | - | chr4.3:87020908-87020927 | MS.gene38298:intron | 45.0% | |
TCGTATCGTGAAGAGGTAAG+CGG | - | chr4.3:87018772-87018791 | MS.gene38298:intron | 45.0% | |
TCTCGAAACTGTGAAACCAG+AGG | - | chr4.3:87021229-87021248 | MS.gene38298:intron | 45.0% | |
TCTTCACGATACGAAGGAAC+TGG | + | chr4.3:87018766-87018785 | None:intergenic | 45.0% | |
TGTTCCTCGCAAAATCTCCT+TGG | + | chr4.3:87019558-87019577 | None:intergenic | 45.0% | |
TTCACACTCAGTACGAAGGT+TGG | + | chr4.3:87020349-87020368 | None:intergenic | 45.0% | |
! | AGCCGCTTCATACTTGTTAC+TGG | + | chr4.3:87017632-87017651 | None:intergenic | 45.0% |
! | CATTTTAGGCCACACCATCA+AGG | + | chr4.3:87017925-87017944 | None:intergenic | 45.0% |
! | GGTTGATGTGGAATCAATCG+TGG | - | chr4.3:87017881-87017900 | MS.gene38298:CDS | 45.0% |
! | TCGAGATGTGCATCCTCTTT+TGG | + | chr4.3:87021215-87021234 | None:intergenic | 45.0% |
! | TCTTCCAAGGAGATTTTGCG+AGG | - | chr4.3:87019551-87019570 | MS.gene38298:intron | 45.0% |
!! | GTTGTCAACTTTGGCTTTCG+TGG | - | chr4.3:87018114-87018133 | MS.gene38298:CDS | 45.0% |
!! | TCAACTTTGGCTTTCGTGGT+CGG | - | chr4.3:87018118-87018137 | MS.gene38298:CDS | 45.0% |
!!! | TCTTCGTGTGAGCTAGCTTT+TGG | - | chr4.3:87020439-87020458 | MS.gene38298:intron | 45.0% |
AAGCTAGCAGAGGAGACAAG+AGG | + | chr4.3:87020135-87020154 | None:intergenic | 50.0% | |
ACATGTGGCTGCAACCTCAA+AGG | + | chr4.3:87018374-87018393 | None:intergenic | 50.0% | |
ACTTATCACGCCACCTGCAA+AGG | - | chr4.3:87020321-87020340 | MS.gene38298:CDS | 50.0% | |
AGCAGAGGAGACAAGAGGTA+AGG | + | chr4.3:87020130-87020149 | None:intergenic | 50.0% | |
AGCGATGCTTTGGTGGAAGA+AGG | - | chr4.3:87020984-87021003 | MS.gene38298:intron | 50.0% | |
AGTTTCCCTGAGGGGCAATT+TGG | + | chr4.3:87020562-87020581 | None:intergenic | 50.0% | |
CAAAGACTACGCTAGTGGTG+AGG | + | chr4.3:87018455-87018474 | None:intergenic | 50.0% | |
CACACTCAGTACGAAGGTTG+GGG | + | chr4.3:87020347-87020366 | None:intergenic | 50.0% | |
GCCTTTCACACTCAGTACGA+AGG | + | chr4.3:87020353-87020372 | None:intergenic | 50.0% | |
GTTCATCATCATGGGGAAGG+TGG | - | chr4.3:87019154-87019173 | MS.gene38298:intron | 50.0% | |
TCAGTTACGCTTACGTTGCG+AGG | - | chr4.3:87019259-87019278 | MS.gene38298:intron | 50.0% | |
TTTGCAGGTGGCGTGATAAG+TGG | + | chr4.3:87020322-87020341 | None:intergenic | 50.0% | |
! | TTTGAGGTTGCAGCCACATG+TGG | - | chr4.3:87018373-87018392 | MS.gene38298:intron | 50.0% |
!! | TGGCGTGATAAGTGGTGGAT+CGG | + | chr4.3:87020314-87020333 | None:intergenic | 50.0% |
!!! | GGCCAGACCCACTTGTTTTT+TGG | - | chr4.3:87020733-87020752 | MS.gene38298:intron | 50.0% |
!!! | GTCTCCTCTGCTAGCTTTTG+AGG | - | chr4.3:87020138-87020157 | MS.gene38298:intron | 50.0% |
!!! | TTCGGAGCTCGTTTTTTCCG+AGG | + | chr4.3:87021458-87021477 | None:intergenic | 50.0% |
AAACTGCGCTTAGTGGTGGC+TGG | - | chr4.3:87019655-87019674 | MS.gene38298:intron | 55.0% | |
ACCTCTTCCGCAACTGTGGA+AGG | + | chr4.3:87019125-87019144 | None:intergenic | 55.0% | |
ACCTTCCACAGTTGCGGAAG+AGG | - | chr4.3:87019121-87019140 | MS.gene38298:intron | 55.0% | |
CACAGTTGCGGAAGAGGTCA+AGG | - | chr4.3:87019127-87019146 | MS.gene38298:intron | 55.0% | |
CTTGACCTCTTCCGCAACTG+TGG | + | chr4.3:87019129-87019148 | None:intergenic | 55.0% | |
GCACAGACCTTCCACAGTTG+CGG | - | chr4.3:87019115-87019134 | MS.gene38298:intron | 55.0% | |
GGCAACTTTGTAGCTGCCTC+TGG | + | chr4.3:87021248-87021267 | None:intergenic | 55.0% | |
AAGGTTGGGGCCTTTGCAGG+TGG | + | chr4.3:87020334-87020353 | None:intergenic | 60.0% | |
ACGAAGGTTGGGGCCTTTGC+AGG | + | chr4.3:87020337-87020356 | None:intergenic | 60.0% | |
ACGCTAGTGGTGAGGGACAC+AGG | + | chr4.3:87018447-87018466 | None:intergenic | 60.0% | |
GCAGGTGGCGTGATAAGTGG+TGG | + | chr4.3:87020319-87020338 | None:intergenic | 60.0% | |
! | GCGTGCTTTGGATGCTGCAG+AGG | - | chr4.3:87019323-87019342 | MS.gene38298:intron | 60.0% |
!! | CTGGCACGAGAAGAGCACCT+AGG | + | chr4.3:87018739-87018758 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 87017607 | 87021499 | 87017607 | ID=MS.gene38298 |
chr4.3 | mRNA | 87017607 | 87021499 | 87017607 | ID=MS.gene38298.t1;Parent=MS.gene38298 |
chr4.3 | exon | 87021416 | 87021499 | 87021416 | ID=MS.gene38298.t1.exon1;Parent=MS.gene38298.t1 |
chr4.3 | CDS | 87021416 | 87021499 | 87021416 | ID=cds.MS.gene38298.t1;Parent=MS.gene38298.t1 |
chr4.3 | exon | 87020501 | 87020566 | 87020501 | ID=MS.gene38298.t1.exon2;Parent=MS.gene38298.t1 |
chr4.3 | CDS | 87020501 | 87020566 | 87020501 | ID=cds.MS.gene38298.t1;Parent=MS.gene38298.t1 |
chr4.3 | exon | 87020320 | 87020415 | 87020320 | ID=MS.gene38298.t1.exon3;Parent=MS.gene38298.t1 |
chr4.3 | CDS | 87020320 | 87020415 | 87020320 | ID=cds.MS.gene38298.t1;Parent=MS.gene38298.t1 |
chr4.3 | exon | 87019934 | 87019995 | 87019934 | ID=MS.gene38298.t1.exon4;Parent=MS.gene38298.t1 |
chr4.3 | CDS | 87019934 | 87019995 | 87019934 | ID=cds.MS.gene38298.t1;Parent=MS.gene38298.t1 |
chr4.3 | exon | 87019678 | 87019843 | 87019678 | ID=MS.gene38298.t1.exon5;Parent=MS.gene38298.t1 |
chr4.3 | CDS | 87019678 | 87019843 | 87019678 | ID=cds.MS.gene38298.t1;Parent=MS.gene38298.t1 |
chr4.3 | exon | 87019351 | 87019557 | 87019351 | ID=MS.gene38298.t1.exon6;Parent=MS.gene38298.t1 |
chr4.3 | CDS | 87019351 | 87019557 | 87019351 | ID=cds.MS.gene38298.t1;Parent=MS.gene38298.t1 |
chr4.3 | exon | 87017607 | 87018176 | 87017607 | ID=MS.gene38298.t1.exon7;Parent=MS.gene38298.t1 |
chr4.3 | CDS | 87017607 | 87018176 | 87017607 | ID=cds.MS.gene38298.t1;Parent=MS.gene38298.t1 |
Gene Sequence |
Protein sequence |