Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38321.t1 | KHN29838.1 | 85.5 | 62 | 9 | 0 | 134 | 195 | 45 | 106 | 1.10E-20 | 110.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38321.t1 | P53681 | 90.0 | 50 | 5 | 0 | 134 | 183 | 231 | 280 | 2.4e-19 | 97.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38321.t1 | A0A0B2RD77 | 85.5 | 62 | 9 | 0 | 134 | 195 | 45 | 106 | 8.2e-21 | 110.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38321.t1 | MTR_4g086660 | 96.000 | 50 | 2 | 0 | 134 | 183 | 220 | 269 | 2.64e-26 | 105 |
| MS.gene38321.t1 | MTR_8g079790 | 88.000 | 50 | 6 | 0 | 134 | 183 | 211 | 260 | 1.84e-23 | 97.4 |
| MS.gene38321.t1 | MTR_5g017830 | 80.000 | 50 | 10 | 0 | 134 | 183 | 217 | 266 | 9.97e-22 | 92.4 |
| MS.gene38321.t1 | MTR_3g092230 | 78.000 | 50 | 11 | 0 | 134 | 183 | 221 | 270 | 1.90e-21 | 91.7 |
| MS.gene38321.t1 | MTR_7g118020 | 78.000 | 50 | 11 | 0 | 134 | 183 | 227 | 276 | 3.44e-21 | 90.9 |
| MS.gene38321.t1 | MTR_7g089480 | 76.000 | 50 | 12 | 0 | 134 | 183 | 224 | 273 | 1.54e-20 | 89.0 |
| MS.gene38321.t1 | MTR_5g092815 | 56.863 | 51 | 21 | 1 | 133 | 183 | 170 | 219 | 7.45e-12 | 63.5 |
| MS.gene38321.t1 | MTR_5g022030 | 56.863 | 51 | 21 | 1 | 134 | 183 | 179 | 229 | 2.48e-11 | 62.4 |
| MS.gene38321.t1 | MTR_5g022030 | 56.863 | 51 | 21 | 1 | 134 | 183 | 179 | 229 | 2.66e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38321.t1 | AT3G50530 | 86.000 | 50 | 7 | 0 | 134 | 183 | 231 | 280 | 1.77e-23 | 97.4 |
| MS.gene38321.t1 | AT3G50530 | 86.000 | 50 | 7 | 0 | 134 | 183 | 231 | 280 | 1.79e-23 | 97.4 |
| MS.gene38321.t1 | AT3G19100 | 86.000 | 50 | 7 | 0 | 134 | 183 | 227 | 276 | 2.61e-23 | 97.1 |
| MS.gene38321.t1 | AT1G49580 | 82.000 | 50 | 9 | 0 | 134 | 183 | 233 | 282 | 1.89e-22 | 94.4 |
| MS.gene38321.t1 | AT2G41140 | 82.353 | 51 | 9 | 0 | 133 | 183 | 205 | 255 | 3.87e-22 | 93.6 |
| MS.gene38321.t1 | AT2G46700 | 80.000 | 50 | 10 | 0 | 134 | 183 | 45 | 94 | 1.12e-21 | 91.7 |
| MS.gene38321.t1 | AT2G46700 | 80.000 | 50 | 10 | 0 | 134 | 183 | 45 | 94 | 1.12e-21 | 91.7 |
| MS.gene38321.t1 | AT2G46700 | 80.000 | 50 | 10 | 0 | 134 | 183 | 226 | 275 | 1.39e-21 | 92.0 |
| MS.gene38321.t1 | AT3G56760 | 80.000 | 50 | 10 | 0 | 134 | 183 | 207 | 256 | 1.16e-20 | 89.4 |
| MS.gene38321.t1 | AT5G24430 | 72.000 | 50 | 14 | 0 | 134 | 183 | 226 | 275 | 1.37e-17 | 80.5 |
| MS.gene38321.t1 | AT3G49370 | 70.000 | 50 | 15 | 0 | 134 | 183 | 225 | 274 | 2.86e-17 | 79.7 |
| MS.gene38321.t1 | AT5G66210 | 60.784 | 51 | 19 | 1 | 134 | 183 | 142 | 192 | 1.02e-12 | 66.2 |
| MS.gene38321.t1 | AT5G66210 | 60.784 | 51 | 19 | 1 | 134 | 183 | 142 | 192 | 1.02e-12 | 66.2 |
| MS.gene38321.t1 | AT5G66210 | 60.784 | 51 | 19 | 1 | 134 | 183 | 142 | 192 | 1.07e-12 | 66.2 |
| MS.gene38321.t1 | AT5G66210 | 60.784 | 51 | 19 | 1 | 134 | 183 | 142 | 192 | 1.07e-12 | 66.2 |
| MS.gene38321.t1 | AT5G66210 | 60.784 | 51 | 19 | 1 | 134 | 183 | 142 | 192 | 1.08e-12 | 66.2 |
| MS.gene38321.t1 | AT5G66210 | 60.784 | 51 | 19 | 1 | 134 | 183 | 142 | 192 | 1.09e-12 | 66.2 |
| MS.gene38321.t1 | AT2G17890 | 60.784 | 51 | 19 | 1 | 134 | 183 | 188 | 238 | 2.41e-12 | 65.1 |
| MS.gene38321.t1 | AT5G12480 | 56.140 | 57 | 23 | 2 | 128 | 183 | 132 | 187 | 2.06e-11 | 62.4 |
| MS.gene38321.t1 | AT5G19450 | 56.140 | 57 | 23 | 2 | 128 | 183 | 130 | 185 | 4.74e-11 | 61.6 |
| MS.gene38321.t1 | AT5G19450 | 56.140 | 57 | 23 | 2 | 128 | 183 | 130 | 185 | 4.74e-11 | 61.6 |
| MS.gene38321.t1 | AT4G36070 | 54.902 | 51 | 22 | 1 | 134 | 183 | 151 | 201 | 5.32e-11 | 61.2 |
| MS.gene38321.t1 | AT4G36070 | 54.902 | 51 | 22 | 1 | 134 | 183 | 151 | 201 | 6.16e-11 | 61.2 |
Find 31 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGATCTTAGTATCAAAAT+AGG | 0.352892 | 7.3:+57752647 | MS.gene38321:CDS |
| TGATTTCCTTCAAAGATTTG+TGG | 0.375736 | 7.3:+57751678 | MS.gene38321:CDS |
| TCACAAACGACATGTGATAA+AGG | 0.434134 | 7.3:+57751177 | MS.gene38321:CDS |
| TGAAAGAATTTGCTCACCTC+AGG | 0.476301 | 7.3:-57754154 | None:intergenic |
| TGTAGAATATGGCATGGAAA+AGG | 0.478206 | 7.3:+57750528 | None:intergenic |
| TGGCCACTCTTGAAACAACT+TGG | 0.479168 | 7.3:+57751698 | MS.gene38321:CDS |
| TCACTAGAGACATCAGATAT+CGG | 0.481120 | 7.3:-57752629 | None:intergenic |
| TCACTAGAGACATCAGATAT+CGG | 0.481120 | 7.3:-57752842 | None:intergenic |
| AGTGATCTTAGCATCGAAAT+CGG | 0.501640 | 7.3:+57752860 | MS.gene38321:CDS |
| GAGTGGCCACAAATCTTTGA+AGG | 0.510401 | 7.3:-57751684 | None:intergenic |
| GACGTTTCAGGTTATGTGAA+GGG | 0.515873 | 7.3:+57753830 | MS.gene38321:intron |
| TCTTTCATTTGTCTTTCAGA+TGG | 0.519208 | 7.3:+57754170 | MS.gene38321:CDS |
| CTCACCTCTTGATCGAATGA+TGG | 0.524033 | 7.3:-57751206 | None:intergenic |
| AGATGATGACAAGGCTGTCA+TGG | 0.551342 | 7.3:+57754069 | MS.gene38321:CDS |
| TTCGTGCTTTGCACTTCACA+AGG | 0.556850 | 7.3:+57752886 | MS.gene38321:CDS |
| TTCATGCTTTGCACTTCACA+AGG | 0.559618 | 7.3:+57752673 | MS.gene38321:CDS |
| CGACGTTTCAGGTTATGTGA+AGG | 0.570325 | 7.3:+57753829 | MS.gene38321:intron |
| AATCTTTGAAGGAAATCAGA+AGG | 0.575316 | 7.3:-57751673 | None:intergenic |
| GCATATGCAATCATTCAGCT+AGG | 0.575476 | 7.3:+57752804 | MS.gene38321:CDS |
| ACGTTTCAGGTTATGTGAAG+GGG | 0.578083 | 7.3:+57753831 | MS.gene38321:intron |
| AAACCAAGTTGTTTCAAGAG+TGG | 0.581186 | 7.3:-57751701 | None:intergenic |
| GGCGAGGTGGAGAGTTCTTG+CGG | 0.604841 | 7.3:-57751652 | None:intergenic |
| GGAACCATCATTCGATCAAG+AGG | 0.619919 | 7.3:+57751202 | MS.gene38321:CDS |
| AAACGACATGTGATAAAGGT+CGG | 0.621082 | 7.3:+57751181 | MS.gene38321:CDS |
| CGTTTCAGGTTATGTGAAGG+GGG | 0.632420 | 7.3:+57753832 | MS.gene38321:intron |
| ATGATTGCATATGCTAGACA+TGG | 0.634319 | 7.3:-57752795 | None:intergenic |
| AAGGAAATCAGAAGGCGAGG+TGG | 0.637595 | 7.3:-57751665 | None:intergenic |
| TTGAAGGAAATCAGAAGGCG+AGG | 0.644398 | 7.3:-57751668 | None:intergenic |
| TATTAGACATGATACTGTCA+AGG | 0.648573 | 7.3:+57753860 | MS.gene38321:CDS |
| GCACAGAGATCTTAAGCCTG+AGG | 0.658568 | 7.3:+57754138 | MS.gene38321:CDS |
| ATACTCAGAAGATGATGACA+AGG | 0.658965 | 7.3:+57754060 | MS.gene38321:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAATATTTTGATTTTTTT+GGG | + | chr7.3:57753306-57753325 | MS.gene38321:intron | 10.0% |
| !! | AAGAAAAACAACATTTATTT+AGG | - | chr7.3:57750716-57750735 | None:intergenic | 15.0% |
| !! | AATTATTATTTGTGTATTAC+AGG | + | chr7.3:57752606-57752625 | MS.gene38321:intron | 15.0% |
| !!! | ACAATATTTTGATTTTTTTG+GGG | + | chr7.3:57753307-57753326 | MS.gene38321:intron | 15.0% |
| !!! | CAACAATATTTTGATTTTTT+TGG | + | chr7.3:57753305-57753324 | MS.gene38321:intron | 15.0% |
| !!! | TTAATGAAGATTTAGTTTAT+CGG | + | chr7.3:57752153-57752172 | MS.gene38321:intron | 15.0% |
| !! | AATAAGAGATCAATAGAATT+TGG | - | chr7.3:57750867-57750886 | None:intergenic | 20.0% |
| !! | TAAATATAAACAAAATCCAC+AGG | - | chr7.3:57753491-57753510 | None:intergenic | 20.0% |
| !! | TATGCAATAACATATAAGAA+AGG | - | chr7.3:57752927-57752946 | None:intergenic | 20.0% |
| !! | TGAATATGCAATAACATATA+AGG | - | chr7.3:57752714-57752733 | None:intergenic | 20.0% |
| !! | TTAGTCTATTATTGTATACT+AGG | + | chr7.3:57752515-57752534 | MS.gene38321:intron | 20.0% |
| !!! | ATTAGATAGTTTTTCACAAA+CGG | + | chr7.3:57753624-57753643 | MS.gene38321:intron | 20.0% |
| !!! | CTGACTTTTATTTAATCTTA+TGG | + | chr7.3:57753268-57753287 | MS.gene38321:intron | 20.0% |
| !!! | TCTCATAAAGTATTTCTAAA+TGG | + | chr7.3:57750930-57750949 | MS.gene38321:intron | 20.0% |
| !!! | TTTATTTTTTTGTTGCTGTT+AGG | + | chr7.3:57750828-57750847 | MS.gene38321:intron | 20.0% |
| ! | AAAATGCACTTAATATACTG+TGG | - | chr7.3:57752193-57752212 | None:intergenic | 25.0% |
| ! | AATATAGCTCGTCATAATTA+TGG | - | chr7.3:57752254-57752273 | None:intergenic | 25.0% |
| ! | AGATAGACGAAAATATAGTA+GGG | + | chr7.3:57753123-57753142 | MS.gene38321:intron | 25.0% |
| ! | AGTGATCTTAGTATCAAAAT+AGG | + | chr7.3:57752647-57752666 | MS.gene38321:CDS | 25.0% |
| ! | ATTAAGATTATGCAAGTACA+AGG | - | chr7.3:57752138-57752157 | None:intergenic | 25.0% |
| ! | CTAAATTGTCCTAAAATGAA+TGG | - | chr7.3:57753428-57753447 | None:intergenic | 25.0% |
| ! | GCAATTAATATTCTCAAATG+TGG | + | chr7.3:57750672-57750691 | MS.gene38321:intron | 25.0% |
| ! | TACATGAACTATCAAAGAAA+TGG | + | chr7.3:57753227-57753246 | MS.gene38321:intron | 25.0% |
| ! | TATATGTGGTTAGATGAAAA+AGG | + | chr7.3:57753371-57753390 | MS.gene38321:intron | 25.0% |
| ! | TATTATATGTGCTTACTTGT+AGG | + | chr7.3:57752582-57752601 | MS.gene38321:intron | 25.0% |
| ! | TGATTTCTCTAACAAATCTT+TGG | - | chr7.3:57752291-57752310 | None:intergenic | 25.0% |
| ! | TTAATTGCCTAAAAGAACTA+AGG | - | chr7.3:57750660-57750679 | None:intergenic | 25.0% |
| ! | TTACAAAATCTGTCATAGTT+TGG | + | chr7.3:57751810-57751829 | MS.gene38321:intron | 25.0% |
| ! | TTAGTTAAATTGTGTTAGAG+TGG | + | chr7.3:57750765-57750784 | MS.gene38321:intron | 25.0% |
| ! | TTTCTTATAGATTCCAATTG+AGG | + | chr7.3:57753546-57753565 | MS.gene38321:intron | 25.0% |
| !! | AAGTATTTCTAAATGGTTGA+AGG | + | chr7.3:57750937-57750956 | MS.gene38321:intron | 25.0% |
| !! | ACAGATTTTGTAACAATTGA+AGG | - | chr7.3:57751803-57751822 | None:intergenic | 25.0% |
| !! | AGTATTTCTAAATGGTTGAA+GGG | + | chr7.3:57750938-57750957 | MS.gene38321:intron | 25.0% |
| !! | ATTTGTTAGAGAAATCACAA+AGG | + | chr7.3:57752294-57752313 | MS.gene38321:intron | 25.0% |
| !! | ATTTTGTAACAATTGAAGGT+TGG | - | chr7.3:57751799-57751818 | None:intergenic | 25.0% |
| !! | TAATGATTGTGTTCTTTTGT+TGG | - | chr7.3:57753608-57753627 | None:intergenic | 25.0% |
| !!! | GATTGATATACACTTTTTTC+AGG | + | chr7.3:57753662-57753681 | MS.gene38321:intron | 25.0% |
| !!! | TATTTCTAGCATAGAAGATA+TGG | + | chr7.3:57750737-57750756 | MS.gene38321:intron | 25.0% |
| !!! | TGTAAACCTTTTTTTGAAAG+TGG | + | chr7.3:57751903-57751922 | MS.gene38321:intron | 25.0% |
| AGAATAATTGCAATGCTGTT+AGG | + | chr7.3:57753189-57753208 | MS.gene38321:intron | 30.0% | |
| ATGATTTATTGCTTCTTCAG+AGG | + | chr7.3:57754031-57754050 | MS.gene38321:intron | 30.0% | |
| CATGTATGTAAAAACATGAG+TGG | + | chr7.3:57752021-57752040 | MS.gene38321:intron | 30.0% | |
| GAGATAGACGAAAATATAGT+AGG | + | chr7.3:57753122-57753141 | MS.gene38321:intron | 30.0% | |
| GATAGACGAAAATATAGTAG+GGG | + | chr7.3:57753124-57753143 | MS.gene38321:intron | 30.0% | |
| GATGTGGTTATATATACATG+TGG | + | chr7.3:57751058-57751077 | MS.gene38321:intron | 30.0% | |
| GCTCTTATGAAATGAAATGA+TGG | + | chr7.3:57750796-57750815 | MS.gene38321:intron | 30.0% | |
| GGAATCTATAAGAAACTAAC+TGG | - | chr7.3:57753541-57753560 | None:intergenic | 30.0% | |
| TAAATCATGTGACTAGTAAG+TGG | - | chr7.3:57754019-57754038 | None:intergenic | 30.0% | |
| TATTAGACATGATACTGTCA+AGG | + | chr7.3:57753860-57753879 | MS.gene38321:CDS | 30.0% | |
| TCTTTCATTTGTCTTTCAGA+TGG | + | chr7.3:57754170-57754189 | MS.gene38321:CDS | 30.0% | |
| TGATTTCCTTCAAAGATTTG+TGG | + | chr7.3:57751678-57751697 | MS.gene38321:CDS | 30.0% | |
| TGTTATATGTTCTTGCTTGT+AGG | + | chr7.3:57753093-57753112 | MS.gene38321:intron | 30.0% | |
| TTCAGACCACTTTCAAAAAA+AGG | - | chr7.3:57751912-57751931 | None:intergenic | 30.0% | |
| TTCCATGACAACATTAATGA+AGG | + | chr7.3:57751986-57752005 | MS.gene38321:intron | 30.0% | |
| TTCCTTCATTAATGTTGTCA+TGG | - | chr7.3:57751991-57752010 | None:intergenic | 30.0% | |
| TTTGATATACGTTCCTCAAT+TGG | - | chr7.3:57753562-57753581 | None:intergenic | 30.0% | |
| ! | AATAGAGGGTATAGAGATAT+AGG | - | chr7.3:57751512-57751531 | None:intergenic | 30.0% |
| ! | AATCTTTGAAGGAAATCAGA+AGG | - | chr7.3:57751676-57751695 | None:intergenic | 30.0% |
| ! | ATTAGTCTCTTGCAAATTCA+AGG | + | chr7.3:57751024-57751043 | MS.gene38321:intron | 30.0% |
| ! | TCTCACTATCTGACTATTTT+TGG | + | chr7.3:57750597-57750616 | MS.gene38321:intron | 30.0% |
| !! | AAACAGTGCTACTCTAAAAT+TGG | - | chr7.3:57752336-57752355 | None:intergenic | 30.0% |
| !! | CTCACTATCTGACTATTTTT+GGG | + | chr7.3:57750598-57750617 | MS.gene38321:intron | 30.0% |
| !! | CTTGATTCCTTAGTTCTTTT+AGG | + | chr7.3:57750650-57750669 | MS.gene38321:intron | 30.0% |
| !! | TTTCTGCTTTAATTTTCCTG+TGG | + | chr7.3:57753472-57753491 | MS.gene38321:intron | 30.0% |
| !!! | GATTTATTTTGTTGCATTGC+AGG | + | chr7.3:57751604-57751623 | MS.gene38321:intron | 30.0% |
| !!! | TCACTATCTGACTATTTTTG+GGG | + | chr7.3:57750599-57750618 | MS.gene38321:intron | 30.0% |
| !!! | TGCATTTTTTGAATGATCTC+CGG | + | chr7.3:57752205-57752224 | MS.gene38321:intron | 30.0% |
| !!! | TTTTTTTGGGGAAAATTTGC+AGG | + | chr7.3:57753319-57753338 | MS.gene38321:intron | 30.0% |
| AAACGACATGTGATAAAGGT+CGG | + | chr7.3:57751181-57751200 | MS.gene38321:CDS | 35.0% | |
| AACTACCTGCAAAGAAATAG+AGG | - | chr7.3:57751527-57751546 | None:intergenic | 35.0% | |
| ACTACCTGCAAAGAAATAGA+GGG | - | chr7.3:57751526-57751545 | None:intergenic | 35.0% | |
| AGACACTTAAAATCTGGAAG+AGG | - | chr7.3:57751478-57751497 | None:intergenic | 35.0% | |
| AGATAACAATTCAGGAAAGC+CGG | - | chr7.3:57752227-57752246 | None:intergenic | 35.0% | |
| ATACTCAGAAGATGATGACA+AGG | + | chr7.3:57754060-57754079 | MS.gene38321:CDS | 35.0% | |
| ATCAGTTATTACTGTGCCTA+AGG | + | chr7.3:57752446-57752465 | MS.gene38321:intron | 35.0% | |
| ATGATTGCATATGCTAGACA+TGG | - | chr7.3:57752798-57752817 | None:intergenic | 35.0% | |
| ATGGTGACAGATAACAATTC+AGG | - | chr7.3:57752235-57752254 | None:intergenic | 35.0% | |
| ATGTAAAAACATGAGTGGTG+AGG | + | chr7.3:57752026-57752045 | MS.gene38321:intron | 35.0% | |
| ATTTATTGCTTCTTCAGAGG+AGG | + | chr7.3:57754034-57754053 | MS.gene38321:intron | 35.0% | |
| CAGATAGTGAGATAGTTGTA+TGG | - | chr7.3:57750589-57750608 | None:intergenic | 35.0% | |
| CATACTCTCATGCAATTGAA+AGG | - | chr7.3:57751285-57751304 | None:intergenic | 35.0% | |
| CCTAAGGTTATCAGTTATGT+AGG | + | chr7.3:57752462-57752481 | MS.gene38321:intron | 35.0% | |
| CCTACATAACTGATAACCTT+AGG | - | chr7.3:57752465-57752484 | None:intergenic | 35.0% | |
| GAATGGCTACTATATCCTTA+GGG | - | chr7.3:57751416-57751435 | None:intergenic | 35.0% | |
| GAGGAACGTATATCAAATGA+TGG | + | chr7.3:57753565-57753584 | MS.gene38321:intron | 35.0% | |
| GTCCTAAAATGAATGGTCAA+AGG | - | chr7.3:57753421-57753440 | None:intergenic | 35.0% | |
| TAATGTTGTCATGGAAAGCA+AGG | - | chr7.3:57751982-57752001 | None:intergenic | 35.0% | |
| TATTGAAATAACGTCGCTAG+CGG | - | chr7.3:57753967-57753986 | None:intergenic | 35.0% | |
| TCACAAACGACATGTGATAA+AGG | + | chr7.3:57751177-57751196 | MS.gene38321:CDS | 35.0% | |
| TCACTAGAGACATCAGATAT+CGG | - | chr7.3:57752632-57752651 | None:intergenic | 35.0% | |
| TTGGTTGTACATAACAGAGT+GGG | - | chr7.3:57751780-57751799 | None:intergenic | 35.0% | |
| TTTATTGCTTCTTCAGAGGA+GGG | + | chr7.3:57754035-57754054 | MS.gene38321:intron | 35.0% | |
| ! | AAACCAAGTTGTTTCAAGAG+TGG | - | chr7.3:57751704-57751723 | None:intergenic | 35.0% |
| ! | AGTGATCTTAGCATCGAAAT+CGG | + | chr7.3:57752860-57752879 | MS.gene38321:CDS | 35.0% |
| ! | AGTGGTCTGAAATGAATTAG+TGG | + | chr7.3:57751921-57751940 | MS.gene38321:intron | 35.0% |
| ! | ATTTTGTCATCTTCAGAGTG+TGG | + | chr7.3:57754114-57754133 | MS.gene38321:CDS | 35.0% |
| ! | CAATTGCATGAGAGTATGTT+TGG | + | chr7.3:57751287-57751306 | MS.gene38321:intron | 35.0% |
| ! | CTCCTTTGACCATTCATTTT+AGG | + | chr7.3:57753416-57753435 | MS.gene38321:intron | 35.0% |
| ! | CTCTTGCAAATTCAAGGTTT+TGG | + | chr7.3:57751030-57751049 | MS.gene38321:intron | 35.0% |
| ! | GAAGATTTAGTTTATCGGCA+AGG | + | chr7.3:57752158-57752177 | MS.gene38321:intron | 35.0% |
| ! | TATACCCTCTATTTCTTTGC+AGG | + | chr7.3:57751519-57751538 | MS.gene38321:intron | 35.0% |
| !! | TTTTGTTGCTGTTAGGACTT+AGG | + | chr7.3:57750835-57750854 | MS.gene38321:intron | 35.0% |
| !!! | GTGGTTTTAGTAATCAGTAG+AGG | + | chr7.3:57751077-57751096 | MS.gene38321:intron | 35.0% |
| ACCAACAAGATAAGCTACAC+TGG | - | chr7.3:57752374-57752393 | None:intergenic | 40.0% | |
| AGCTGCTTGTAAGGTTGAAT+AGG | + | chr7.3:57750560-57750579 | MS.gene38321:intron | 40.0% | |
| AGTAATCAGTAGAGGTGATG+TGG | + | chr7.3:57751085-57751104 | MS.gene38321:intron | 40.0% | |
| ATGCAATTCTACCCACTTGT+GGG | - | chr7.3:57751438-57751457 | None:intergenic | 40.0% | |
| CAAACGGTTCAGCTAAAGAA+AGG | + | chr7.3:57753640-57753659 | MS.gene38321:intron | 40.0% | |
| CACTTAAAATCTGGAAGAGG+AGG | - | chr7.3:57751475-57751494 | None:intergenic | 40.0% | |
| CAGAGTGGGTAAATTGAAAC+TGG | - | chr7.3:57751766-57751785 | None:intergenic | 40.0% | |
| CCACGAAGACACTTAAAATC+TGG | - | chr7.3:57751484-57751503 | None:intergenic | 40.0% | |
| CTGAATACTATCGACGTTTC+AGG | + | chr7.3:57753818-57753837 | MS.gene38321:intron | 40.0% | |
| GCATATGCAATCATTCAGCT+AGG | + | chr7.3:57752804-57752823 | MS.gene38321:CDS | 40.0% | |
| GCATGAAATATAGCCGCTAT+CGG | + | chr7.3:57753903-57753922 | MS.gene38321:intron | 40.0% | |
| GGAAAATTTGCAGGTGAAAG+TGG | + | chr7.3:57753328-57753347 | MS.gene38321:intron | 40.0% | |
| GGAACACAAAACCTACATCA+GGG | - | chr7.3:57751550-57751569 | None:intergenic | 40.0% | |
| GGAATGGCTACTATATCCTT+AGG | - | chr7.3:57751417-57751436 | None:intergenic | 40.0% | |
| GTTGGTTGTACATAACAGAG+TGG | - | chr7.3:57751781-57751800 | None:intergenic | 40.0% | |
| TAGGAGCAATCTGCTATATG+TGG | + | chr7.3:57753357-57753376 | MS.gene38321:intron | 40.0% | |
| TATGCAATTCTACCCACTTG+TGG | - | chr7.3:57751439-57751458 | None:intergenic | 40.0% | |
| TGTGACACTTCTGTCTTCAT+AGG | + | chr7.3:57751735-57751754 | MS.gene38321:intron | 40.0% | |
| TGTTAGTTCAACTAGCCCTA+AGG | + | chr7.3:57751398-57751417 | MS.gene38321:intron | 40.0% | |
| TTAAAATCTGGAAGAGGAGG+AGG | - | chr7.3:57751472-57751491 | None:intergenic | 40.0% | |
| TTCATGCTTTGCACTTCACA+AGG | + | chr7.3:57752673-57752692 | MS.gene38321:CDS | 40.0% | |
| ! | GAGGCTTGCTTGAAATTAAG+TGG | + | chr7.3:57752045-57752064 | MS.gene38321:intron | 40.0% |
| ! | TGAAAGAATTTGCTCACCTC+AGG | - | chr7.3:57754157-57754176 | None:intergenic | 40.0% |
| !! | ACGTTTCAGGTTATGTGAAG+GGG | + | chr7.3:57753831-57753850 | MS.gene38321:intron | 40.0% |
| !! | ATGAAGACAGAAGTGTCACA+AGG | - | chr7.3:57751735-57751754 | None:intergenic | 40.0% |
| !! | CAAGGTTTTGGTAGTTGATG+TGG | + | chr7.3:57751042-57751061 | MS.gene38321:intron | 40.0% |
| !! | CCAGATTTTAAGTGTCTTCG+TGG | + | chr7.3:57751481-57751500 | MS.gene38321:intron | 40.0% |
| !! | CGTTGCTTTGGTTTCTTTTG+CGG | + | chr7.3:57751329-57751348 | MS.gene38321:intron | 40.0% |
| !! | GACGTTTCAGGTTATGTGAA+GGG | + | chr7.3:57753830-57753849 | MS.gene38321:intron | 40.0% |
| !! | GTTGCTTTGGTTTCTTTTGC+GGG | + | chr7.3:57751330-57751349 | MS.gene38321:intron | 40.0% |
| !! | TGAAGACAGAAGTGTCACAA+GGG | - | chr7.3:57751734-57751753 | None:intergenic | 40.0% |
| !!! | AGATCATGGGTTCTGAGTTT+TGG | + | chr7.3:57751000-57751019 | MS.gene38321:intron | 40.0% |
| AGATGATGACAAGGCTGTCA+TGG | + | chr7.3:57754069-57754088 | MS.gene38321:CDS | 45.0% | |
| ATAGTAGCCATTCCCACAAG+TGG | + | chr7.3:57751423-57751442 | MS.gene38321:intron | 45.0% | |
| ATTCTACCCACTTGTGGGAA+TGG | - | chr7.3:57751433-57751452 | None:intergenic | 45.0% | |
| CATGTGACTAGTAAGTGGCA+AGG | - | chr7.3:57754014-57754033 | None:intergenic | 45.0% | |
| CGTTTAGTCTCTCGTTGCTT+TGG | + | chr7.3:57751317-57751336 | MS.gene38321:intron | 45.0% | |
| CTCACCTCTTGATCGAATGA+TGG | - | chr7.3:57751209-57751228 | None:intergenic | 45.0% | |
| GAGTGGCCACAAATCTTTGA+AGG | - | chr7.3:57751687-57751706 | None:intergenic | 45.0% | |
| GCAACTCCAAATGTTACGTC+AGG | - | chr7.3:57750966-57750985 | None:intergenic | 45.0% | |
| GCCAGTGTAGCTTATCTTGT+TGG | + | chr7.3:57752370-57752389 | MS.gene38321:intron | 45.0% | |
| GCTATGTGGCTGAAGATCAT+GGG | + | chr7.3:57750987-57751006 | MS.gene38321:intron | 45.0% | |
| GGAACCATCATTCGATCAAG+AGG | + | chr7.3:57751202-57751221 | MS.gene38321:CDS | 45.0% | |
| GGGAACACAAAACCTACATC+AGG | - | chr7.3:57751551-57751570 | None:intergenic | 45.0% | |
| GTCATGGAAAGCAAGGAGAA+AGG | - | chr7.3:57751975-57751994 | None:intergenic | 45.0% | |
| TAGTAGCCATTCCCACAAGT+GGG | + | chr7.3:57751424-57751443 | MS.gene38321:intron | 45.0% | |
| TGCTATGTGGCTGAAGATCA+TGG | + | chr7.3:57750986-57751005 | MS.gene38321:intron | 45.0% | |
| TGCTCAAACAGCTGCTTGTA+AGG | + | chr7.3:57750551-57750570 | MS.gene38321:intron | 45.0% | |
| TGGCCACTCTTGAAACAACT+TGG | + | chr7.3:57751698-57751717 | MS.gene38321:CDS | 45.0% | |
| TGTCTTGCATGAGTGCATCA+TGG | + | chr7.3:57751949-57751968 | MS.gene38321:intron | 45.0% | |
| TTCGTGCTTTGCACTTCACA+AGG | + | chr7.3:57752886-57752905 | MS.gene38321:CDS | 45.0% | |
| TTGAAGGAAATCAGAAGGCG+AGG | - | chr7.3:57751671-57751690 | None:intergenic | 45.0% | |
| ! | CATTTGGAGTTGCTGCTATG+TGG | + | chr7.3:57750973-57750992 | MS.gene38321:intron | 45.0% |
| ! | CTTTTGCGGGCTCAAATTTG+TGG | + | chr7.3:57751343-57751362 | MS.gene38321:intron | 45.0% |
| ! | TGTTGCTGTTAGGACTTAGG+CGG | + | chr7.3:57750838-57750857 | MS.gene38321:intron | 45.0% |
| !! | CGACGTTTCAGGTTATGTGA+AGG | + | chr7.3:57753829-57753848 | MS.gene38321:intron | 45.0% |
| !! | CGTTTCAGGTTATGTGAAGG+GGG | + | chr7.3:57753832-57753851 | MS.gene38321:intron | 45.0% |
| AAGGAAATCAGAAGGCGAGG+TGG | - | chr7.3:57751668-57751687 | None:intergenic | 50.0% | |
| AGCGGCTCTATTTCATGTGG+AGG | - | chr7.3:57753949-57753968 | None:intergenic | 50.0% | |
| AGGGAGCCTGACGTAACATT+TGG | + | chr7.3:57750957-57750976 | MS.gene38321:intron | 50.0% | |
| CAGGTGAAAGTGGTGAGCTT+AGG | + | chr7.3:57753338-57753357 | MS.gene38321:intron | 50.0% | |
| GCACAGAGATCTTAAGCCTG+AGG | + | chr7.3:57754138-57754157 | MS.gene38321:CDS | 50.0% | |
| GCTAGCGGCTCTATTTCATG+TGG | - | chr7.3:57753952-57753971 | None:intergenic | 50.0% | |
| GGCTCTATTTCATGTGGAGG+AGG | - | chr7.3:57753946-57753965 | None:intergenic | 50.0% | |
| TGCAGGTAGTTCCCTGATGT+AGG | + | chr7.3:57751536-57751555 | MS.gene38321:intron | 50.0% | |
| CAAATTTCTCCGCGAGCAGC+GGG | - | chr7.3:57751571-57751590 | None:intergenic | 55.0% | |
| GCAAATTTCTCCGCGAGCAG+CGG | - | chr7.3:57751572-57751591 | None:intergenic | 55.0% | |
| ! | TTTTGTGTTCCCGCTGCTCG+CGG | + | chr7.3:57751559-57751578 | MS.gene38321:intron | 55.0% |
| GGCGAGGTGGAGAGTTCTTG+CGG | - | chr7.3:57751655-57751674 | None:intergenic | 60.0% | |
| TAGCCGCTATCGGCGCAGTG+CGG | + | chr7.3:57753913-57753932 | MS.gene38321:intron | 65.0% | |
| CGCTATCGGCGCAGTGCGGT+GGG | + | chr7.3:57753917-57753936 | MS.gene38321:intron | 70.0% | |
| ! | CCACCGCACTGCGCCGATAG+CGG | - | chr7.3:57753919-57753938 | None:intergenic | 70.0% |
| CCGCTATCGGCGCAGTGCGG+TGG | + | chr7.3:57753916-57753935 | MS.gene38321:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 57750541 | 57754204 | 57750541 | ID=MS.gene38321 |
| chr7.3 | mRNA | 57750541 | 57754204 | 57750541 | ID=MS.gene38321.t1;Parent=MS.gene38321 |
| chr7.3 | exon | 57750541 | 57750567 | 57750541 | ID=MS.gene38321.t1.exon1;Parent=MS.gene38321.t1 |
| chr7.3 | CDS | 57750541 | 57750567 | 57750541 | ID=cds.MS.gene38321.t1;Parent=MS.gene38321.t1 |
| chr7.3 | exon | 57751145 | 57751223 | 57751145 | ID=MS.gene38321.t1.exon2;Parent=MS.gene38321.t1 |
| chr7.3 | CDS | 57751145 | 57751223 | 57751145 | ID=cds.MS.gene38321.t1;Parent=MS.gene38321.t1 |
| chr7.3 | exon | 57751626 | 57751719 | 57751626 | ID=MS.gene38321.t1.exon3;Parent=MS.gene38321.t1 |
| chr7.3 | CDS | 57751626 | 57751719 | 57751626 | ID=cds.MS.gene38321.t1;Parent=MS.gene38321.t1 |
| chr7.3 | exon | 57752628 | 57752694 | 57752628 | ID=MS.gene38321.t1.exon4;Parent=MS.gene38321.t1 |
| chr7.3 | CDS | 57752628 | 57752694 | 57752628 | ID=cds.MS.gene38321.t1;Parent=MS.gene38321.t1 |
| chr7.3 | exon | 57752777 | 57752907 | 57752777 | ID=MS.gene38321.t1.exon5;Parent=MS.gene38321.t1 |
| chr7.3 | CDS | 57752777 | 57752907 | 57752777 | ID=cds.MS.gene38321.t1;Parent=MS.gene38321.t1 |
| chr7.3 | exon | 57753840 | 57753881 | 57753840 | ID=MS.gene38321.t1.exon6;Parent=MS.gene38321.t1 |
| chr7.3 | CDS | 57753840 | 57753881 | 57753840 | ID=cds.MS.gene38321.t1;Parent=MS.gene38321.t1 |
| chr7.3 | exon | 57754051 | 57754204 | 57754051 | ID=MS.gene38321.t1.exon7;Parent=MS.gene38321.t1 |
| chr7.3 | CDS | 57754051 | 57754204 | 57754051 | ID=cds.MS.gene38321.t1;Parent=MS.gene38321.t1 |
| Gene Sequence |
| Protein sequence |
