Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38353.t1 | XP_003603049.1 | 97.9 | 388 | 4 | 2 | 1 | 388 | 1 | 384 | 1.90E-185 | 658.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38353.t1 | Q9M7Q4 | 51.5 | 396 | 110 | 15 | 28 | 388 | 21 | 369 | 2.6e-79 | 297.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38353.t1 | G7J6E3 | 97.9 | 388 | 4 | 2 | 1 | 388 | 1 | 384 | 1.3e-185 | 658.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene38353.t1 | TF | bZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38353.t1 | MTR_3g101780 | 95.070 | 426 | 15 | 3 | 1 | 424 | 1 | 422 | 0.0 | 801 |
MS.gene38353.t1 | MTR_4g085910 | 46.117 | 412 | 137 | 15 | 24 | 414 | 14 | 361 | 1.35e-90 | 279 |
MS.gene38353.t1 | MTR_8g043960 | 50.407 | 123 | 54 | 2 | 28 | 145 | 24 | 144 | 4.81e-29 | 115 |
MS.gene38353.t1 | MTR_8g043960 | 63.235 | 68 | 22 | 1 | 338 | 402 | 221 | 288 | 1.51e-17 | 83.2 |
MS.gene38353.t1 | MTR_6g026800 | 45.517 | 145 | 65 | 3 | 15 | 145 | 2 | 146 | 6.00e-28 | 113 |
MS.gene38353.t1 | MTR_7g104480 | 47.015 | 134 | 49 | 4 | 34 | 145 | 45 | 178 | 8.02e-27 | 112 |
MS.gene38353.t1 | MTR_7g104480 | 45.522 | 134 | 65 | 3 | 281 | 412 | 274 | 401 | 2.93e-12 | 68.6 |
MS.gene38353.t1 | MTR_3g010660 | 49.180 | 122 | 55 | 2 | 27 | 143 | 19 | 138 | 4.14e-26 | 108 |
MS.gene38353.t1 | MTR_3g010660 | 41.284 | 109 | 61 | 1 | 297 | 402 | 189 | 297 | 1.34e-17 | 83.6 |
MS.gene38353.t1 | MTR_7g088090 | 41.791 | 134 | 62 | 3 | 28 | 151 | 16 | 143 | 9.04e-23 | 98.6 |
MS.gene38353.t1 | MTR_7g088090 | 67.213 | 61 | 19 | 1 | 343 | 402 | 235 | 295 | 4.77e-17 | 82.0 |
MS.gene38353.t1 | MTR_2g086340 | 40.458 | 131 | 63 | 5 | 29 | 147 | 23 | 150 | 4.84e-19 | 87.8 |
MS.gene38353.t1 | MTR_5g088230 | 46.721 | 122 | 55 | 3 | 28 | 142 | 17 | 135 | 2.29e-18 | 84.7 |
MS.gene38353.t1 | MTR_5g088230 | 58.333 | 60 | 25 | 0 | 343 | 402 | 180 | 239 | 3.74e-12 | 66.6 |
MS.gene38353.t1 | MTR_5g088230 | 46.721 | 122 | 55 | 3 | 28 | 142 | 22 | 140 | 2.30e-18 | 85.1 |
MS.gene38353.t1 | MTR_5g088230 | 58.333 | 60 | 25 | 0 | 343 | 402 | 185 | 244 | 3.34e-12 | 67.0 |
MS.gene38353.t1 | MTR_2g086390 | 36.943 | 157 | 79 | 8 | 21 | 163 | 1 | 151 | 5.55e-16 | 78.6 |
MS.gene38353.t1 | MTR_2g086390 | 54.930 | 71 | 32 | 0 | 343 | 413 | 197 | 267 | 1.02e-14 | 74.7 |
MS.gene38353.t1 | MTR_2g086390 | 37.143 | 140 | 72 | 6 | 21 | 147 | 1 | 137 | 1.76e-15 | 77.0 |
MS.gene38353.t1 | MTR_2g086390 | 63.158 | 57 | 21 | 0 | 343 | 399 | 197 | 253 | 4.31e-15 | 75.9 |
MS.gene38353.t1 | MTR_7g015990 | 41.121 | 107 | 46 | 3 | 328 | 422 | 83 | 184 | 1.12e-12 | 67.0 |
MS.gene38353.t1 | MTR_1g098590 | 50.000 | 74 | 29 | 1 | 351 | 424 | 157 | 222 | 1.35e-12 | 67.4 |
MS.gene38353.t1 | MTR_4g094390 | 37.500 | 136 | 73 | 4 | 280 | 413 | 62 | 187 | 1.61e-12 | 66.6 |
MS.gene38353.t1 | MTR_1g098590 | 62.264 | 53 | 20 | 0 | 351 | 403 | 157 | 209 | 1.83e-12 | 67.4 |
MS.gene38353.t1 | MTR_1g098590 | 62.264 | 53 | 20 | 0 | 351 | 403 | 157 | 209 | 3.74e-12 | 66.2 |
MS.gene38353.t1 | MTR_5g022780 | 53.846 | 65 | 18 | 1 | 356 | 408 | 166 | 230 | 4.09e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38353.t1 | AT1G45249 | 53.613 | 429 | 115 | 16 | 28 | 419 | 21 | 402 | 9.48e-117 | 347 |
MS.gene38353.t1 | AT1G45249 | 53.613 | 429 | 115 | 16 | 28 | 419 | 36 | 417 | 1.65e-116 | 347 |
MS.gene38353.t1 | AT1G45249 | 53.613 | 429 | 115 | 16 | 28 | 419 | 36 | 417 | 1.65e-116 | 347 |
MS.gene38353.t1 | AT1G45249 | 52.273 | 440 | 115 | 17 | 28 | 419 | 21 | 413 | 3.54e-113 | 338 |
MS.gene38353.t1 | AT1G45249 | 51.282 | 390 | 108 | 15 | 28 | 382 | 21 | 363 | 8.88e-96 | 292 |
MS.gene38353.t1 | AT1G45249 | 51.282 | 390 | 108 | 15 | 28 | 382 | 21 | 363 | 8.88e-96 | 292 |
MS.gene38353.t1 | AT1G45249 | 49.876 | 403 | 114 | 16 | 28 | 389 | 21 | 376 | 1.80e-94 | 290 |
MS.gene38353.t1 | AT1G45249 | 49.876 | 403 | 114 | 16 | 28 | 389 | 21 | 376 | 1.80e-94 | 290 |
MS.gene38353.t1 | AT1G45249 | 49.876 | 403 | 114 | 16 | 28 | 389 | 21 | 376 | 1.80e-94 | 290 |
MS.gene38353.t1 | AT1G45249 | 49.876 | 403 | 114 | 16 | 28 | 389 | 21 | 376 | 1.80e-94 | 290 |
MS.gene38353.t1 | AT4G34000 | 42.975 | 484 | 173 | 17 | 1 | 424 | 5 | 445 | 9.82e-85 | 266 |
MS.gene38353.t1 | AT4G34000 | 42.975 | 484 | 173 | 17 | 1 | 424 | 5 | 445 | 9.82e-85 | 266 |
MS.gene38353.t1 | AT4G34000 | 42.975 | 484 | 173 | 17 | 1 | 424 | 5 | 445 | 9.82e-85 | 266 |
MS.gene38353.t1 | AT3G19290 | 46.135 | 414 | 161 | 12 | 26 | 413 | 32 | 409 | 9.95e-85 | 265 |
MS.gene38353.t1 | AT3G19290 | 46.489 | 413 | 159 | 12 | 26 | 412 | 32 | 408 | 2.26e-84 | 265 |
MS.gene38353.t1 | AT3G19290 | 46.489 | 413 | 159 | 12 | 26 | 412 | 32 | 408 | 2.26e-84 | 265 |
MS.gene38353.t1 | AT3G19290 | 45.561 | 428 | 168 | 13 | 26 | 424 | 32 | 423 | 4.29e-84 | 264 |
MS.gene38353.t1 | AT1G49720 | 44.578 | 415 | 159 | 14 | 16 | 413 | 9 | 369 | 9.11e-80 | 252 |
MS.gene38353.t1 | AT1G49720 | 44.928 | 414 | 157 | 14 | 16 | 412 | 9 | 368 | 1.21e-79 | 251 |
MS.gene38353.t1 | AT1G49720 | 44.928 | 414 | 157 | 14 | 16 | 412 | 9 | 368 | 1.21e-79 | 251 |
MS.gene38353.t1 | AT4G34000 | 42.888 | 457 | 162 | 16 | 1 | 401 | 5 | 418 | 7.43e-79 | 251 |
MS.gene38353.t1 | AT3G19290 | 41.889 | 413 | 176 | 13 | 26 | 412 | 32 | 406 | 3.91e-66 | 217 |
MS.gene38353.t1 | AT5G42910 | 35.323 | 402 | 169 | 13 | 28 | 412 | 20 | 347 | 3.65e-45 | 160 |
MS.gene38353.t1 | AT3G56850 | 56.557 | 122 | 48 | 2 | 28 | 145 | 16 | 136 | 1.72e-32 | 125 |
MS.gene38353.t1 | AT3G56850 | 68.852 | 61 | 18 | 1 | 343 | 402 | 212 | 272 | 6.59e-18 | 84.3 |
MS.gene38353.t1 | AT2G41070 | 47.436 | 156 | 63 | 4 | 28 | 182 | 16 | 153 | 3.11e-32 | 122 |
MS.gene38353.t1 | AT2G41070 | 63.636 | 66 | 24 | 0 | 343 | 408 | 178 | 243 | 6.33e-18 | 83.2 |
MS.gene38353.t1 | AT2G41070 | 47.436 | 156 | 63 | 4 | 28 | 182 | 16 | 153 | 7.10e-32 | 122 |
MS.gene38353.t1 | AT2G41070 | 66.667 | 60 | 20 | 0 | 343 | 402 | 178 | 237 | 2.33e-17 | 82.0 |
MS.gene38353.t1 | AT2G41070 | 47.436 | 156 | 63 | 4 | 28 | 182 | 16 | 153 | 7.10e-32 | 122 |
MS.gene38353.t1 | AT2G41070 | 66.667 | 60 | 20 | 0 | 343 | 402 | 178 | 237 | 2.33e-17 | 82.0 |
MS.gene38353.t1 | AT2G41070 | 47.436 | 156 | 63 | 4 | 28 | 182 | 16 | 153 | 7.10e-32 | 122 |
MS.gene38353.t1 | AT2G41070 | 66.667 | 60 | 20 | 0 | 343 | 402 | 178 | 237 | 2.33e-17 | 82.0 |
MS.gene38353.t1 | AT2G41070 | 47.436 | 156 | 63 | 4 | 28 | 182 | 25 | 162 | 7.97e-32 | 122 |
MS.gene38353.t1 | AT2G41070 | 66.667 | 60 | 20 | 0 | 343 | 402 | 187 | 246 | 2.05e-17 | 82.4 |
MS.gene38353.t1 | AT2G36270 | 55.046 | 109 | 45 | 2 | 306 | 412 | 306 | 412 | 7.42e-24 | 103 |
MS.gene38353.t1 | AT2G36270 | 38.144 | 194 | 42 | 6 | 25 | 145 | 31 | 219 | 4.16e-22 | 98.6 |
MS.gene38353.t1 | AT2G36270 | 53.097 | 113 | 49 | 2 | 306 | 416 | 306 | 416 | 9.26e-24 | 103 |
MS.gene38353.t1 | AT2G36270 | 38.144 | 194 | 42 | 6 | 25 | 145 | 31 | 219 | 2.68e-22 | 99.0 |
MS.gene38353.t1 | AT2G36270 | 53.097 | 113 | 49 | 2 | 306 | 416 | 306 | 416 | 9.26e-24 | 103 |
MS.gene38353.t1 | AT2G36270 | 38.144 | 194 | 42 | 6 | 25 | 145 | 31 | 219 | 2.68e-22 | 99.0 |
MS.gene38353.t1 | AT3G44460 | 40.964 | 166 | 73 | 6 | 27 | 176 | 34 | 190 | 4.56e-23 | 99.8 |
MS.gene38353.t1 | AT5G44080 | 61.429 | 70 | 24 | 1 | 337 | 403 | 210 | 279 | 1.42e-15 | 77.8 |
MS.gene38353.t1 | AT4G35900 | 50.000 | 94 | 38 | 2 | 327 | 414 | 189 | 279 | 2.39e-14 | 73.6 |
MS.gene38353.t1 | AT1G03970 | 63.492 | 63 | 23 | 0 | 341 | 403 | 173 | 235 | 2.78e-14 | 73.2 |
MS.gene38353.t1 | AT2G17770 | 49.367 | 79 | 38 | 1 | 340 | 416 | 109 | 187 | 1.18e-13 | 69.7 |
Find 112 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGAGGTTCTGGAAAAGATTT+TGG | 0.152121 | 3.2:+84727377 | MS.gene38353:CDS |
CCAGATATCTAGTGATAAAA+TGG | 0.157392 | 3.2:+84728180 | MS.gene38353:CDS |
GAATAAAGTTGCTGGCTTTA+TGG | 0.173743 | 3.2:+84727763 | MS.gene38353:CDS |
TGTTGGAAATAATGGTAATT+TGG | 0.177665 | 3.2:+84727715 | MS.gene38353:CDS |
AGAATGAATTTCAAGGGTTT+TGG | 0.193549 | 3.2:+84727236 | None:intergenic |
AATTTGCCTTTGAATGTTAA+TGG | 0.203648 | 3.2:+84727845 | MS.gene38353:CDS |
GGATTATGGTGGTCCTAATT+TGG | 0.219976 | 3.2:+84727568 | MS.gene38353:CDS |
ATGAATTGTTGAAGAATATT+TGG | 0.232178 | 3.2:+84727414 | MS.gene38353:CDS |
GTTGGAAATAATGGTAATTT+GGG | 0.258825 | 3.2:+84727716 | MS.gene38353:CDS |
AATAAAGTTGCTGGCTTTAT+GGG | 0.266563 | 3.2:+84727764 | MS.gene38353:CDS |
AAGGATATTTCTAAGGATTA+TGG | 0.280302 | 3.2:+84727554 | MS.gene38353:CDS |
GGGAATGGTAGTAGAATTAA+TGG | 0.305683 | 3.2:+84727785 | MS.gene38353:CDS |
GTCATTGGTGCAGCCAAATT+AGG | 0.329699 | 3.2:-84727581 | None:intergenic |
CTTGGTAATGTTGGAAATAA+TGG | 0.336097 | 3.2:+84727707 | MS.gene38353:CDS |
ATGAACAGTATGGGAGGTTC+TGG | 0.340323 | 3.2:+84727365 | MS.gene38353:CDS |
ATTTGCCTTTGAATGTTAAT+GGG | 0.351757 | 3.2:+84727846 | MS.gene38353:CDS |
TGATGAATTTATGAACAGTA+TGG | 0.356110 | 3.2:+84727355 | MS.gene38353:CDS |
GGTTTGGAAGGATATTTCTA+AGG | 0.362538 | 3.2:+84727547 | MS.gene38353:CDS |
AGAAAACAGTTGATGAGGTT+TGG | 0.367163 | 3.2:+84727531 | MS.gene38353:CDS |
TATCCTCCCACCTCCGTTGC+CGG | 0.367304 | 3.2:-84727279 | None:intergenic |
AAATAATGGTAATTTGGGTT+TGG | 0.367355 | 3.2:+84727721 | MS.gene38353:CDS |
AATTTACCTGCTTGCGAGCC+CGG | 0.373655 | 3.2:-84728354 | None:intergenic |
GAGAAGAATGATCAAGAATA+GGG | 0.378154 | 3.2:+84728315 | MS.gene38353:CDS |
AGGGATTGGTATGGTTGGTT+TGG | 0.387370 | 3.2:+84728117 | MS.gene38353:CDS |
ACAGGCTTATACCATGGAAT+TGG | 0.387535 | 3.2:+84729172 | MS.gene38353:intron |
ACTCAGAGACAACCAACTTT+GGG | 0.389084 | 3.2:+84727602 | MS.gene38353:CDS |
GCCTCCGCCGGCAACGGAGG+TGG | 0.391920 | 3.2:+84727272 | MS.gene38353:CDS |
GACTCAGAGACAACCAACTT+TGG | 0.399256 | 3.2:+84727601 | MS.gene38353:CDS |
CCCACCTCCGTTGCCGGCGG+AGG | 0.402096 | 3.2:-84727273 | None:intergenic |
TAGTTCAAACCAGGTTGCTT+TGG | 0.406205 | 3.2:-84727995 | None:intergenic |
AGAGAAGAATGATCAAGAAT+AGG | 0.407993 | 3.2:+84728314 | MS.gene38353:CDS |
GGAATGAGAGGTGGAATTGT+AGG | 0.418501 | 3.2:+84728049 | MS.gene38353:CDS |
ACATTCAAAGGCAAATTAGT+AGG | 0.428171 | 3.2:-84727839 | None:intergenic |
TACTGATTCTTTAAGGGCAC+TGG | 0.434920 | 3.2:-84730012 | None:intergenic |
GTAGGGCTTTCTCCTGATCA+AGG | 0.442348 | 3.2:+84728067 | MS.gene38353:CDS |
TTACCATTCAATCCTTGATC+AGG | 0.443983 | 3.2:-84728079 | None:intergenic |
GGTATGGTTGGTTTGGCACC+AGG | 0.447725 | 3.2:+84728124 | MS.gene38353:CDS |
CAGCAGATGAATAAAGTTGC+TGG | 0.448703 | 3.2:+84727755 | MS.gene38353:CDS |
TCTCCTGATCAAGGATTGAA+TGG | 0.449484 | 3.2:+84728076 | MS.gene38353:CDS |
GATGCAGAATTCACAGTCTC+AGG | 0.456432 | 3.2:+84727895 | MS.gene38353:CDS |
CTTGTGCAAGGTGGAGGGAT+TGG | 0.459403 | 3.2:+84728103 | MS.gene38353:CDS |
TTTCTTGATCTTGGTAATGT+TGG | 0.467333 | 3.2:+84727698 | MS.gene38353:CDS |
GGTGGAGGGATTGGTATGGT+TGG | 0.467962 | 3.2:+84728112 | MS.gene38353:CDS |
GTTGGTTGTCTCTGAGTCAT+TGG | 0.468259 | 3.2:-84727596 | None:intergenic |
GATTAGAAGAATGAATTTCA+AGG | 0.472686 | 3.2:+84727229 | None:intergenic |
CAGATATCTAGTGATAAAAT+GGG | 0.478085 | 3.2:+84728181 | MS.gene38353:CDS |
CCTCCGCCGGCAACGGAGGT+GGG | 0.479264 | 3.2:+84727273 | MS.gene38353:CDS |
AATACTGCAGGAAGAAATCA+TGG | 0.484256 | 3.2:+84729359 | MS.gene38353:intron |
GGTAATCTTGTGCAAGGTGG+AGG | 0.487894 | 3.2:+84728097 | MS.gene38353:CDS |
TTCATTACAGGCTTATACCA+TGG | 0.487947 | 3.2:+84729166 | MS.gene38353:intron |
TAGATCCCGGGCTCGCAAGC+AGG | 0.489774 | 3.2:+84728348 | MS.gene38353:CDS |
ATTTACCTGCTTGCGAGCCC+GGG | 0.490069 | 3.2:-84728353 | None:intergenic |
GGGAGTCAGCTGCTAGATCC+CGG | 0.491880 | 3.2:+84728335 | MS.gene38353:CDS |
AACTTCTGCTTCCAATTCCA+TGG | 0.494273 | 3.2:-84729183 | None:intergenic |
GCACCAGGCGCTGTTCAAAT+CGG | 0.497361 | 3.2:+84728139 | MS.gene38353:CDS |
ATGCCTTTGTCTAATAATCA+AGG | 0.498880 | 3.2:+84728028 | MS.gene38353:CDS |
AACAGTTGATGAGGTTTGGA+AGG | 0.501243 | 3.2:+84727535 | MS.gene38353:CDS |
CTAATCCCATTAACATTCAA+AGG | 0.509259 | 3.2:-84727851 | None:intergenic |
GCAAGGTGGAGGGATTGGTA+TGG | 0.513932 | 3.2:+84728108 | MS.gene38353:CDS |
CAAGGAGCCTCCGCCGGCAA+CGG | 0.518328 | 3.2:+84727266 | MS.gene38353:CDS |
CAAATATTTCCAAAGCAACC+TGG | 0.521079 | 3.2:+84727986 | MS.gene38353:CDS |
GCTGAAGAGGTTCAAACAAT+GGG | 0.523150 | 3.2:+84727440 | MS.gene38353:CDS |
GGTAATGATGATCCACTTGT+TGG | 0.523912 | 3.2:+84727806 | MS.gene38353:CDS |
GATGAATTTATGAACAGTAT+GGG | 0.524106 | 3.2:+84727356 | MS.gene38353:CDS |
ATTAGAAGAATGAATTTCAA+GGG | 0.525965 | 3.2:+84727230 | None:intergenic |
TCACTAGATATCTGGTTAGC+CGG | 0.531140 | 3.2:-84728172 | None:intergenic |
GCACCGATTTGAACAGCGCC+TGG | 0.532017 | 3.2:-84728142 | None:intergenic |
GGAGCCTCCGCCGGCAACGG+AGG | 0.533095 | 3.2:+84727269 | MS.gene38353:CDS |
TTAATGGTGGTATGCGAGGG+AGG | 0.536824 | 3.2:+84728251 | MS.gene38353:CDS |
CGGAGGTGGGAGGATAGCGG+CGG | 0.537694 | 3.2:+84727286 | MS.gene38353:CDS |
GTTGCTGGCTTTATGGGGAA+TGG | 0.543011 | 3.2:+84727770 | MS.gene38353:CDS |
AGGTAATGGAGCTGTGGAGA+AGG | 0.545271 | 3.2:+84728276 | MS.gene38353:CDS |
AATGATCAAGGAGCCTCCGC+CGG | 0.545660 | 3.2:+84727260 | MS.gene38353:CDS |
TGATACTTCTTCTGTGTCGC+CGG | 0.548990 | 3.2:+84728216 | MS.gene38353:CDS |
GGTGGTATGCGAGGGAGGAA+AGG | 0.549516 | 3.2:+84728256 | MS.gene38353:CDS |
TCAAATCGGTGCTGTCTCAC+CGG | 0.551923 | 3.2:+84728153 | MS.gene38353:CDS |
ATTCCTTGATTATTAGACAA+AGG | 0.554034 | 3.2:-84728031 | None:intergenic |
GAGGAAAGGTAATGGAGCTG+TGG | 0.555405 | 3.2:+84728270 | MS.gene38353:CDS |
GAAGATGCTAAGCCAAATGA+TGG | 0.557262 | 3.2:+84727671 | MS.gene38353:CDS |
TGCTGAAGAGGTTCAAACAA+TGG | 0.558140 | 3.2:+84727439 | MS.gene38353:CDS |
ATGCGAGGGAGGAAAGGTAA+TGG | 0.558382 | 3.2:+84728262 | MS.gene38353:CDS |
GAATGAGAGGTGGAATTGTA+GGG | 0.560499 | 3.2:+84728050 | MS.gene38353:CDS |
TAGTCAGAAAACAGTTGATG+AGG | 0.564073 | 3.2:+84727526 | MS.gene38353:CDS |
TTAGTAAGAAATATGTTCAA+AGG | 0.565792 | 3.2:+84729980 | MS.gene38353:CDS |
GGAGGTGGGAGGATAGCGGC+GGG | 0.565977 | 3.2:+84727287 | MS.gene38353:CDS |
GAATATTTGGAGTGCTGAAG+AGG | 0.566232 | 3.2:+84727427 | MS.gene38353:CDS |
GATAAAATGGGAAAGAGTAA+CGG | 0.571198 | 3.2:+84728193 | MS.gene38353:CDS |
CTGTGGAGAAGGTAATTGAG+AGG | 0.572191 | 3.2:+84728287 | MS.gene38353:CDS |
TCTAATAATCAAGGAATGAG+AGG | 0.577040 | 3.2:+84728037 | MS.gene38353:CDS |
TCCGCTGACGAGGCAACCGT+CGG | 0.578535 | 3.2:+84727316 | MS.gene38353:CDS |
CTCAGAGACAACCAACTTTG+GGG | 0.586904 | 3.2:+84727603 | MS.gene38353:CDS |
GGAGTCAGCTGCTAGATCCC+GGG | 0.588687 | 3.2:+84728336 | MS.gene38353:CDS |
CAACGGAGGTGGGAGGATAG+CGG | 0.595196 | 3.2:+84727283 | MS.gene38353:CDS |
ATAAAGTTGCTGGCTTTATG+GGG | 0.596851 | 3.2:+84727765 | MS.gene38353:CDS |
AGTAATCATTTGCAAAGACA+AGG | 0.608196 | 3.2:+84727479 | MS.gene38353:CDS |
GTAATCTTGTGCAAGGTGGA+GGG | 0.620240 | 3.2:+84728098 | MS.gene38353:CDS |
AATAATCAAGGAATGAGAGG+TGG | 0.622320 | 3.2:+84728040 | MS.gene38353:CDS |
ACCGTCGGTGTATTCGCTGA+CGG | 0.623631 | 3.2:+84727331 | MS.gene38353:CDS |
GATATTTCTAAGGATTATGG+TGG | 0.625463 | 3.2:+84727557 | MS.gene38353:CDS |
CCTCCCACCTCCGTTGCCGG+CGG | 0.627327 | 3.2:-84727276 | None:intergenic |
TGAGTTGCATAGTTCAAACC+AGG | 0.629400 | 3.2:-84728004 | None:intergenic |
GGACTTTGAAGACCAACAAG+TGG | 0.630814 | 3.2:-84727818 | None:intergenic |
CCGCCGGCAACGGAGGTGGG+AGG | 0.631875 | 3.2:+84727276 | MS.gene38353:CDS |
GAGGTGGGAGGATAGCGGCG+GGG | 0.636472 | 3.2:+84727288 | MS.gene38353:CDS |
ACCGACGGTTGCCTCGTCAG+CGG | 0.647274 | 3.2:-84727317 | None:intergenic |
TGGAGAAGGTAATTGAGAGG+AGG | 0.650346 | 3.2:+84728290 | MS.gene38353:CDS |
GAATTTATGAACAGTATGGG+AGG | 0.655045 | 3.2:+84727359 | MS.gene38353:CDS |
TTGAATGGTAATCTTGTGCA+AGG | 0.684719 | 3.2:+84728091 | MS.gene38353:CDS |
TCAGAGACAACCAACTTTGG+GGG | 0.686998 | 3.2:+84727604 | MS.gene38353:CDS |
AATGGTAATCTTGTGCAAGG+TGG | 0.698472 | 3.2:+84728094 | MS.gene38353:CDS |
GAAGAGGTTCAAACAATGGG+TGG | 0.702046 | 3.2:+84727443 | MS.gene38353:CDS |
ACCGTCAGCGAATACACCGA+CGG | 0.702106 | 3.2:-84727332 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTATATTTTCACAATAAAG+AGG | - | chr3.2:84728703-84728722 | None:intergenic | 15.0% |
!!! | TTTTTATTTTCATTCATTAC+AGG | + | chr3.2:84729154-84729173 | MS.gene38353:intron | 15.0% |
!! | ATAGATAGTTCACTATTAAT+AGG | + | chr3.2:84728721-84728740 | MS.gene38353:intron | 20.0% |
!! | ATGAATTGTTGAAGAATATT+TGG | + | chr3.2:84727414-84727433 | MS.gene38353:CDS | 20.0% |
!! | TAGATAGTTCACTATTAATA+GGG | + | chr3.2:84728722-84728741 | MS.gene38353:intron | 20.0% |
!! | TTAGTAAGAAATATGTTCAA+AGG | + | chr3.2:84729980-84729999 | MS.gene38353:CDS | 20.0% |
! | AATTTGCCTTTGAATGTTAA+TGG | + | chr3.2:84727845-84727864 | MS.gene38353:CDS | 25.0% |
! | ATACCACCATTAAAAACATA+AGG | - | chr3.2:84728244-84728263 | None:intergenic | 25.0% |
! | ATTCCTTGATTATTAGACAA+AGG | - | chr3.2:84728034-84728053 | None:intergenic | 25.0% |
! | ATTTGCCTTTGAATGTTAAT+GGG | + | chr3.2:84727846-84727865 | MS.gene38353:CDS | 25.0% |
! | CAAATTAGCATGTTATATGA+AGG | - | chr3.2:84729576-84729595 | None:intergenic | 25.0% |
! | CAGATATCTAGTGATAAAAT+GGG | + | chr3.2:84728181-84728200 | MS.gene38353:CDS | 25.0% |
! | CATGTTATGATTATAGTACA+AGG | + | chr3.2:84728809-84728828 | MS.gene38353:intron | 25.0% |
! | GATGAATTTATGAACAGTAT+GGG | + | chr3.2:84727356-84727375 | MS.gene38353:CDS | 25.0% |
! | GTTGGAAATAATGGTAATTT+GGG | + | chr3.2:84727716-84727735 | MS.gene38353:CDS | 25.0% |
! | TGATGAATTTATGAACAGTA+TGG | + | chr3.2:84727355-84727374 | MS.gene38353:CDS | 25.0% |
! | TGTTGGAAATAATGGTAATT+TGG | + | chr3.2:84727715-84727734 | MS.gene38353:CDS | 25.0% |
! | TTCATTTCTACATGAATTTG+TGG | + | chr3.2:84729289-84729308 | MS.gene38353:intron | 25.0% |
! | TTTGAACTGATACCTAATTT+AGG | + | chr3.2:84729753-84729772 | MS.gene38353:intron | 25.0% |
!! | AAATAATGGTAATTTGGGTT+TGG | + | chr3.2:84727721-84727740 | MS.gene38353:CDS | 25.0% |
!! | AACCAAGAACAAATGATTTT+CGG | - | chr3.2:84729427-84729446 | None:intergenic | 25.0% |
!! | AAGGATATTTCTAAGGATTA+TGG | + | chr3.2:84727554-84727573 | MS.gene38353:CDS | 25.0% |
!! | ATGAAAGGTGAAAGATTTTT+GGG | + | chr3.2:84728924-84728943 | MS.gene38353:intron | 25.0% |
!! | CCACAAAAGCATATATTAAT+GGG | + | chr3.2:84729043-84729062 | MS.gene38353:intron | 25.0% |
!! | TCCACAAAAGCATATATTAA+TGG | + | chr3.2:84729042-84729061 | MS.gene38353:intron | 25.0% |
!!! | AAGCATATATTAATGGGTTT+TGG | + | chr3.2:84729049-84729068 | MS.gene38353:intron | 25.0% |
!!! | ATATATTAATGGGTTTTGGT+GGG | + | chr3.2:84729053-84729072 | MS.gene38353:intron | 25.0% |
AAAATCTTTCACCTTTCATC+AGG | - | chr3.2:84728923-84728942 | None:intergenic | 30.0% | |
AATTAGGTATCAGTTCAAAC+AGG | - | chr3.2:84729752-84729771 | None:intergenic | 30.0% | |
ACAAGACAGAAGATAAAAAG+TGG | - | chr3.2:84729915-84729934 | None:intergenic | 30.0% | |
ACATTCAAAGGCAAATTAGT+AGG | - | chr3.2:84727842-84727861 | None:intergenic | 30.0% | |
AGAGAAGAATGATCAAGAAT+AGG | + | chr3.2:84728314-84728333 | MS.gene38353:CDS | 30.0% | |
AGAGGAGTAGACATATATAA+GGG | - | chr3.2:84728516-84728535 | None:intergenic | 30.0% | |
AGTAATCATTTGCAAAGACA+AGG | + | chr3.2:84727479-84727498 | MS.gene38353:CDS | 30.0% | |
AGTTCACTATTAATAGGGTT+TGG | + | chr3.2:84728727-84728746 | MS.gene38353:intron | 30.0% | |
ATGACAATTTGTAAGGATTC+AGG | + | chr3.2:84728958-84728977 | MS.gene38353:intron | 30.0% | |
ATGCCTTTGTCTAATAATCA+AGG | + | chr3.2:84728028-84728047 | MS.gene38353:CDS | 30.0% | |
ATGGTTGTAGAATGATTTGA+TGG | + | chr3.2:84729944-84729963 | MS.gene38353:intron | 30.0% | |
ATTTAAGTGACTAACAAGCA+CGG | - | chr3.2:84728577-84728596 | None:intergenic | 30.0% | |
CCAGATATCTAGTGATAAAA+TGG | + | chr3.2:84728180-84728199 | MS.gene38353:CDS | 30.0% | |
CCATTAAAAACATAAGGAAC+CGG | - | chr3.2:84728238-84728257 | None:intergenic | 30.0% | |
CTAATCCCATTAACATTCAA+AGG | - | chr3.2:84727854-84727873 | None:intergenic | 30.0% | |
GAGAAGAATGATCAAGAATA+GGG | + | chr3.2:84728315-84728334 | MS.gene38353:CDS | 30.0% | |
GATAAAATGGGAAAGAGTAA+CGG | + | chr3.2:84728193-84728212 | MS.gene38353:CDS | 30.0% | |
GTCATTGTGAAGATAACATT+TGG | + | chr3.2:84729633-84729652 | MS.gene38353:intron | 30.0% | |
TAAAAAGTGGCATAAGACAA+AGG | - | chr3.2:84729902-84729921 | None:intergenic | 30.0% | |
TACAGTCATGACAATTTGTA+AGG | + | chr3.2:84728951-84728970 | MS.gene38353:intron | 30.0% | |
TATATAAGGGAACAGATACT+AGG | - | chr3.2:84728503-84728522 | None:intergenic | 30.0% | |
TCAAGAAAAACACCATCATT+TGG | - | chr3.2:84727686-84727705 | None:intergenic | 30.0% | |
TCAAGAGTAGAACCTAAATT+AGG | - | chr3.2:84729768-84729787 | None:intergenic | 30.0% | |
TCAGAAAAAGCAGGTATTTA+TGG | + | chr3.2:84729235-84729254 | MS.gene38353:intron | 30.0% | |
TCTAATAATCAAGGAATGAG+AGG | + | chr3.2:84728037-84728056 | MS.gene38353:CDS | 30.0% | |
TGTCAGGTTCAAAATAAGAA+CGG | + | chr3.2:84729692-84729711 | MS.gene38353:intron | 30.0% | |
TGTTCAAATGAACAATTACG+TGG | + | chr3.2:84728444-84728463 | MS.gene38353:intron | 30.0% | |
TTTACCTTCTAGTAACAGAA+AGG | + | chr3.2:84728666-84728685 | MS.gene38353:intron | 30.0% | |
! | AAATCACGAACACATTCTTT+TGG | - | chr3.2:84728785-84728804 | None:intergenic | 30.0% |
! | CCATTTTATCACTAGATATC+TGG | - | chr3.2:84728183-84728202 | None:intergenic | 30.0% |
! | CCCATTAATATATGCTTTTG+TGG | - | chr3.2:84729046-84729065 | None:intergenic | 30.0% |
! | GATATTTCTAAGGATTATGG+TGG | + | chr3.2:84727557-84727576 | MS.gene38353:CDS | 30.0% |
! | GATGAAAGGTGAAAGATTTT+TGG | + | chr3.2:84728923-84728942 | MS.gene38353:intron | 30.0% |
!! | AATAAAGTTGCTGGCTTTAT+GGG | + | chr3.2:84727764-84727783 | MS.gene38353:CDS | 30.0% |
!! | CTTGGTAATGTTGGAAATAA+TGG | + | chr3.2:84727707-84727726 | MS.gene38353:CDS | 30.0% |
!! | GTTCCTTATGTTTTTAATGG+TGG | + | chr3.2:84728238-84728257 | MS.gene38353:CDS | 30.0% |
!! | TAAGGATTCAGGTTTTAACA+AGG | + | chr3.2:84728969-84728988 | MS.gene38353:intron | 30.0% |
!! | TTCAGGTTTTAACAAGGTAA+TGG | + | chr3.2:84728975-84728994 | MS.gene38353:intron | 30.0% |
!! | TTTCTTGATCTTGGTAATGT+TGG | + | chr3.2:84727698-84727717 | MS.gene38353:CDS | 30.0% |
!!! | CATATATTAATGGGTTTTGG+TGG | + | chr3.2:84729052-84729071 | MS.gene38353:intron | 30.0% |
AATAATCAAGGAATGAGAGG+TGG | + | chr3.2:84728040-84728059 | MS.gene38353:CDS | 35.0% | |
AATACTGCAGGAAGAAATCA+TGG | + | chr3.2:84729359-84729378 | MS.gene38353:intron | 35.0% | |
ACCATTATTCTGAATACTGC+AGG | + | chr3.2:84729347-84729366 | MS.gene38353:intron | 35.0% | |
ACTAGAGACTTGTACAGTTA+AGG | - | chr3.2:84729481-84729500 | None:intergenic | 35.0% | |
AGGTTCAAAATAAGAACGGT+CGG | + | chr3.2:84729696-84729715 | MS.gene38353:intron | 35.0% | |
CAAATATTTCCAAAGCAACC+TGG | + | chr3.2:84727986-84728005 | MS.gene38353:CDS | 35.0% | |
CTACATGAATTTGTGGCTTA+AGG | + | chr3.2:84729296-84729315 | MS.gene38353:intron | 35.0% | |
GAATTTATGAACAGTATGGG+AGG | + | chr3.2:84727359-84727378 | MS.gene38353:CDS | 35.0% | |
GAGAGGAGTAGACATATATA+AGG | - | chr3.2:84728517-84728536 | None:intergenic | 35.0% | |
GGATAAAAGCAGAATGTCAA+TGG | - | chr3.2:84728847-84728866 | None:intergenic | 35.0% | |
GGGAATGGTAGTAGAATTAA+TGG | + | chr3.2:84727785-84727804 | MS.gene38353:CDS | 35.0% | |
GTCAGAAGTTATGCTAATCA+AGG | + | chr3.2:84729655-84729674 | MS.gene38353:intron | 35.0% | |
TAGACTCTTTGTATATCGAG+AGG | - | chr3.2:84728534-84728553 | None:intergenic | 35.0% | |
TCCTGCAGTATTCAGAATAA+TGG | - | chr3.2:84729351-84729370 | None:intergenic | 35.0% | |
TCGGTTAAGAAGTCATGAAT+AGG | + | chr3.2:84729548-84729567 | MS.gene38353:intron | 35.0% | |
TCTGTCTTGTATTCACTTGA+TGG | + | chr3.2:84729925-84729944 | MS.gene38353:intron | 35.0% | |
TGAAGAACTTCAGAAAAAGC+AGG | + | chr3.2:84729226-84729245 | MS.gene38353:CDS | 35.0% | |
TTACCATTCAATCCTTGATC+AGG | - | chr3.2:84728082-84728101 | None:intergenic | 35.0% | |
TTCATTACAGGCTTATACCA+TGG | + | chr3.2:84729166-84729185 | MS.gene38353:intron | 35.0% | |
TTGAATGGTAATCTTGTGCA+AGG | + | chr3.2:84728091-84728110 | MS.gene38353:CDS | 35.0% | |
! | AACCGATTAGTCACAAAACA+GGG | - | chr3.2:84729534-84729553 | None:intergenic | 35.0% |
! | GATGGTGTTTTTCTTGATCT+TGG | + | chr3.2:84727689-84727708 | MS.gene38353:CDS | 35.0% |
! | GGTTTGGAAGGATATTTCTA+AGG | + | chr3.2:84727547-84727566 | MS.gene38353:CDS | 35.0% |
! | TAACCGATTAGTCACAAAAC+AGG | - | chr3.2:84729535-84729554 | None:intergenic | 35.0% |
! | TAGTCAGAAAACAGTTGATG+AGG | + | chr3.2:84727526-84727545 | MS.gene38353:CDS | 35.0% |
! | TTTTTAATGGTGGTATGCGA+GGG | + | chr3.2:84728248-84728267 | MS.gene38353:CDS | 35.0% |
!! | AGAAAACAGTTGATGAGGTT+TGG | + | chr3.2:84727531-84727550 | MS.gene38353:CDS | 35.0% |
!! | AGATTTTGGGTCAATGAACA+TGG | + | chr3.2:84727391-84727410 | MS.gene38353:CDS | 35.0% |
!! | ATAAAGTTGCTGGCTTTATG+GGG | + | chr3.2:84727765-84727784 | MS.gene38353:CDS | 35.0% |
!! | CCGGTTCCTTATGTTTTTAA+TGG | + | chr3.2:84728235-84728254 | MS.gene38353:CDS | 35.0% |
!! | GAATAAAGTTGCTGGCTTTA+TGG | + | chr3.2:84727763-84727782 | MS.gene38353:CDS | 35.0% |
!! | GATGACTTTGGAAGAGTTTT+TGG | + | chr3.2:84727628-84727647 | MS.gene38353:CDS | 35.0% |
!!! | GAGGTTCTGGAAAAGATTTT+GGG | + | chr3.2:84727378-84727397 | MS.gene38353:CDS | 35.0% |
!!! | TAATTTGGGTTTGGCTTTTC+AGG | + | chr3.2:84727730-84727749 | MS.gene38353:CDS | 35.0% |
AACTTCTGCTTCCAATTCCA+TGG | - | chr3.2:84729186-84729205 | None:intergenic | 40.0% | |
AATGGTAATCTTGTGCAAGG+TGG | + | chr3.2:84728094-84728113 | MS.gene38353:CDS | 40.0% | |
ACAGGCTTATACCATGGAAT+TGG | + | chr3.2:84729172-84729191 | MS.gene38353:intron | 40.0% | |
ACTCAGAGACAACCAACTTT+GGG | + | chr3.2:84727602-84727621 | MS.gene38353:CDS | 40.0% | |
CAAAATAAGAACGGTCGGTT+TGG | + | chr3.2:84729701-84729720 | MS.gene38353:intron | 40.0% | |
CAGCAGATGAATAAAGTTGC+TGG | + | chr3.2:84727755-84727774 | MS.gene38353:CDS | 40.0% | |
CGCCGAAAATCATTTGTTCT+TGG | + | chr3.2:84729422-84729441 | MS.gene38353:intron | 40.0% | |
CTCACCTTTCTGTTACTAGA+AGG | - | chr3.2:84728673-84728692 | None:intergenic | 40.0% | |
CTGCGTCTGTATGTGAAATA+CGG | - | chr3.2:84729266-84729285 | None:intergenic | 40.0% | |
GAAGATGCTAAGCCAAATGA+TGG | + | chr3.2:84727671-84727690 | MS.gene38353:CDS | 40.0% | |
GAATGAGAGGTGGAATTGTA+GGG | + | chr3.2:84728050-84728069 | MS.gene38353:CDS | 40.0% | |
GCTGAAGAGGTTCAAACAAT+GGG | + | chr3.2:84727440-84727459 | MS.gene38353:CDS | 40.0% | |
GGATTATGGTGGTCCTAATT+TGG | + | chr3.2:84727568-84727587 | MS.gene38353:CDS | 40.0% | |
GGTAATGATGATCCACTTGT+TGG | + | chr3.2:84727806-84727825 | MS.gene38353:CDS | 40.0% | |
TAACTGCATTCTCCATGTAC+TGG | + | chr3.2:84728600-84728619 | MS.gene38353:intron | 40.0% | |
TAGTTCAAACCAGGTTGCTT+TGG | - | chr3.2:84727998-84728017 | None:intergenic | 40.0% | |
TCACTAGATATCTGGTTAGC+CGG | - | chr3.2:84728175-84728194 | None:intergenic | 40.0% | |
TCTCCTGATCAAGGATTGAA+TGG | + | chr3.2:84728076-84728095 | MS.gene38353:CDS | 40.0% | |
TGAGTTGCATAGTTCAAACC+AGG | - | chr3.2:84728007-84728026 | None:intergenic | 40.0% | |
TGCTGAAGAGGTTCAAACAA+TGG | + | chr3.2:84727439-84727458 | MS.gene38353:CDS | 40.0% | |
! | GTTTTCTGACTAAGAGTTCG+CGG | - | chr3.2:84727518-84727537 | None:intergenic | 40.0% |
! | GTTTTTAATGGTGGTATGCG+AGG | + | chr3.2:84728247-84728266 | MS.gene38353:CDS | 40.0% |
! | TGCCCTGTTTTGTGACTAAT+CGG | + | chr3.2:84729529-84729548 | MS.gene38353:intron | 40.0% |
! | TTTTGGTGGGAACATGACAT+GGG | + | chr3.2:84729066-84729085 | MS.gene38353:intron | 40.0% |
!! | AACAGTTGATGAGGTTTGGA+AGG | + | chr3.2:84727535-84727554 | MS.gene38353:CDS | 40.0% |
!! | GAATATTTGGAGTGCTGAAG+AGG | + | chr3.2:84727427-84727446 | MS.gene38353:CDS | 40.0% |
!!! | AAGGGTTTTGGGAATGATCA+AGG | + | chr3.2:84727248-84727267 | MS.gene38353:CDS | 40.0% |
!!! | GAAGAGTTTTTGGTTAGAGC+TGG | + | chr3.2:84727638-84727657 | MS.gene38353:CDS | 40.0% |
!!! | GGAGGTTCTGGAAAAGATTT+TGG | + | chr3.2:84727377-84727396 | MS.gene38353:CDS | 40.0% |
AAAGTCATCTCCCCCAAAGT+TGG | - | chr3.2:84727617-84727636 | None:intergenic | 45.0% | |
AGCAATAGAGGGTTCGACAA+AGG | + | chr3.2:84729611-84729630 | MS.gene38353:intron | 45.0% | |
ATGAACAGTATGGGAGGTTC+TGG | + | chr3.2:84727365-84727384 | MS.gene38353:CDS | 45.0% | |
CATACACAGCATGTTCACAG+AGG | - | chr3.2:84728868-84728887 | None:intergenic | 45.0% | |
CGTATTTCACATACAGACGC+AGG | + | chr3.2:84729264-84729283 | MS.gene38353:intron | 45.0% | |
CTCAGAGACAACCAACTTTG+GGG | + | chr3.2:84727603-84727622 | MS.gene38353:CDS | 45.0% | |
CTCGCAGAATATACGTCGAT+CGG | - | chr3.2:84729848-84729867 | None:intergenic | 45.0% | |
CTGTGGAGAAGGTAATTGAG+AGG | + | chr3.2:84728287-84728306 | MS.gene38353:CDS | 45.0% | |
GAAGAGGTTCAAACAATGGG+TGG | + | chr3.2:84727443-84727462 | MS.gene38353:CDS | 45.0% | |
GACTCAGAGACAACCAACTT+TGG | + | chr3.2:84727601-84727620 | MS.gene38353:CDS | 45.0% | |
GATGCAGAATTCACAGTCTC+AGG | + | chr3.2:84727895-84727914 | MS.gene38353:CDS | 45.0% | |
GGAATGAGAGGTGGAATTGT+AGG | + | chr3.2:84728049-84728068 | MS.gene38353:CDS | 45.0% | |
GTAATCTTGTGCAAGGTGGA+GGG | + | chr3.2:84728098-84728117 | MS.gene38353:CDS | 45.0% | |
GTCATTGGTGCAGCCAAATT+AGG | - | chr3.2:84727584-84727603 | None:intergenic | 45.0% | |
GTTGGTTGTCTCTGAGTCAT+TGG | - | chr3.2:84727599-84727618 | None:intergenic | 45.0% | |
TAGCGATCTGACCTGATGAA+AGG | + | chr3.2:84728909-84728928 | MS.gene38353:intron | 45.0% | |
TAGTCACAAAACAGGGCACA+AGG | - | chr3.2:84729527-84729546 | None:intergenic | 45.0% | |
TCAGAGACAACCAACTTTGG+GGG | + | chr3.2:84727604-84727623 | MS.gene38353:CDS | 45.0% | |
TGATACTTCTTCTGTGTCGC+CGG | + | chr3.2:84728216-84728235 | MS.gene38353:CDS | 45.0% | |
TGGAGAAGGTAATTGAGAGG+AGG | + | chr3.2:84728290-84728309 | MS.gene38353:CDS | 45.0% | |
! | AACTTTGGGGGAGATGACTT+TGG | + | chr3.2:84727616-84727635 | MS.gene38353:CDS | 45.0% |
! | AAGGTAATGGTGCAACTGAC+TGG | + | chr3.2:84728988-84729007 | MS.gene38353:intron | 45.0% |
! | AGGGATTGGTATGGTTGGTT+TGG | + | chr3.2:84728117-84728136 | MS.gene38353:CDS | 45.0% |
! | AGGTAATGGTGCAACTGACT+GGG | + | chr3.2:84728989-84729008 | MS.gene38353:intron | 45.0% |
! | GGACTTTGAAGACCAACAAG+TGG | - | chr3.2:84727821-84727840 | None:intergenic | 45.0% |
!! | GTTTTGGTGGGAACATGACA+TGG | + | chr3.2:84729065-84729084 | MS.gene38353:intron | 45.0% |
!!! | AAATTTATTTTAATATTTGA+TGG | - | chr3.2:84729801-84729820 | None:intergenic | 5.0% |
AATTTACCTGCTTGCGAGCC+CGG | - | chr3.2:84728357-84728376 | None:intergenic | 50.0% | |
AGTCAGTCAGTGCAGACTGT+AGG | + | chr3.2:84728642-84728661 | MS.gene38353:intron | 50.0% | |
ATGCGAGGGAGGAAAGGTAA+TGG | + | chr3.2:84728262-84728281 | MS.gene38353:CDS | 50.0% | |
CTGACTGGGGAACTTAACTG+CGG | + | chr3.2:84729003-84729022 | MS.gene38353:intron | 50.0% | |
GAACCCTCTATTGCTCTTGG+CGG | - | chr3.2:84729606-84729625 | None:intergenic | 50.0% | |
GCTGTGTATGTGCAGCAGAA+TGG | + | chr3.2:84728878-84728897 | MS.gene38353:intron | 50.0% | |
GGTAATCTTGTGCAAGGTGG+AGG | + | chr3.2:84728097-84728116 | MS.gene38353:CDS | 50.0% | |
GTAGGGCTTTCTCCTGATCA+AGG | + | chr3.2:84728067-84728086 | MS.gene38353:CDS | 50.0% | |
GTATCGCTCAGACCAGTACA+TGG | - | chr3.2:84728615-84728634 | None:intergenic | 50.0% | |
GTCGAACCCTCTATTGCTCT+TGG | - | chr3.2:84729609-84729628 | None:intergenic | 50.0% | |
TTAATGGTGGTATGCGAGGG+AGG | + | chr3.2:84728251-84728270 | MS.gene38353:CDS | 50.0% | |
! | GGCACTTTTGTGTGCTTGTC+AGG | + | chr3.2:84729676-84729695 | MS.gene38353:intron | 50.0% |
! | GGTAATGGTGCAACTGACTG+GGG | + | chr3.2:84728990-84729009 | MS.gene38353:intron | 50.0% |
!! | ACGGTCGGTTTGGTGTTATG+TGG | + | chr3.2:84729711-84729730 | MS.gene38353:intron | 50.0% |
!! | AGGTAATGGAGCTGTGGAGA+AGG | + | chr3.2:84728276-84728295 | MS.gene38353:CDS | 50.0% |
!! | GAGGAAAGGTAATGGAGCTG+TGG | + | chr3.2:84728270-84728289 | MS.gene38353:CDS | 50.0% |
!! | GTTGCTGGCTTTATGGGGAA+TGG | + | chr3.2:84727770-84727789 | MS.gene38353:CDS | 50.0% |
!! | TCAAATCGGTGCTGTCTCAC+CGG | + | chr3.2:84728153-84728172 | MS.gene38353:CDS | 50.0% |
AATGATCAAGGAGCCTCCGC+CGG | + | chr3.2:84727260-84727279 | MS.gene38353:CDS | 55.0% | |
ACCGTCAGCGAATACACCGA+CGG | - | chr3.2:84727335-84727354 | None:intergenic | 55.0% | |
ACCGTCGGTGTATTCGCTGA+CGG | + | chr3.2:84727331-84727350 | MS.gene38353:CDS | 55.0% | |
ATTTACCTGCTTGCGAGCCC+GGG | - | chr3.2:84728356-84728375 | None:intergenic | 55.0% | |
CCTCCGCCAAGAGCAATAGA+GGG | + | chr3.2:84729600-84729619 | MS.gene38353:intron | 55.0% | |
CCTCTATTGCTCTTGGCGGA+GGG | - | chr3.2:84729602-84729621 | None:intergenic | 55.0% | |
CTTGTGCAAGGTGGAGGGAT+TGG | + | chr3.2:84728103-84728122 | MS.gene38353:CDS | 55.0% | |
! | GCAAGGTGGAGGGATTGGTA+TGG | + | chr3.2:84728108-84728127 | MS.gene38353:CDS | 55.0% |
! | GCACCAGGCGCTGTTCAAAT+CGG | + | chr3.2:84728139-84728158 | MS.gene38353:CDS | 55.0% |
! | GGTGGAGGGATTGGTATGGT+TGG | + | chr3.2:84728112-84728131 | MS.gene38353:CDS | 55.0% |
!! | GGTATGGTTGGTTTGGCACC+AGG | + | chr3.2:84728124-84728143 | MS.gene38353:CDS | 55.0% |
CAACGGAGGTGGGAGGATAG+CGG | + | chr3.2:84727283-84727302 | MS.gene38353:CDS | 60.0% | |
CCCTCCGCCAAGAGCAATAG+AGG | + | chr3.2:84729599-84729618 | MS.gene38353:intron | 60.0% | |
CCCTCTATTGCTCTTGGCGG+AGG | - | chr3.2:84729603-84729622 | None:intergenic | 60.0% | |
GGAGTCAGCTGCTAGATCCC+GGG | + | chr3.2:84728336-84728355 | MS.gene38353:CDS | 60.0% | |
GGGAGTCAGCTGCTAGATCC+CGG | + | chr3.2:84728335-84728354 | MS.gene38353:CDS | 60.0% | |
GGTGGTATGCGAGGGAGGAA+AGG | + | chr3.2:84728256-84728275 | MS.gene38353:CDS | 60.0% | |
TATCCTCCCACCTCCGTTGC+CGG | - | chr3.2:84727282-84727301 | None:intergenic | 60.0% | |
! | CGGGGAATTTTCCGCTGACG+AGG | + | chr3.2:84727306-84727325 | MS.gene38353:CDS | 60.0% |
!! | GCACCGATTTGAACAGCGCC+TGG | - | chr3.2:84728145-84728164 | None:intergenic | 60.0% |
ACCGACGGTTGCCTCGTCAG+CGG | - | chr3.2:84727320-84727339 | None:intergenic | 65.0% | |
TAGATCCCGGGCTCGCAAGC+AGG | + | chr3.2:84728348-84728367 | MS.gene38353:CDS | 65.0% | |
TCCGCTGACGAGGCAACCGT+CGG | + | chr3.2:84727316-84727335 | MS.gene38353:CDS | 65.0% | |
CAAGGAGCCTCCGCCGGCAA+CGG | + | chr3.2:84727266-84727285 | MS.gene38353:CDS | 70.0% | |
! | CGGAGGTGGGAGGATAGCGG+CGG | + | chr3.2:84727286-84727305 | MS.gene38353:CDS | 70.0% |
! | GAGGTGGGAGGATAGCGGCG+GGG | + | chr3.2:84727288-84727307 | MS.gene38353:CDS | 70.0% |
! | GGAGGTGGGAGGATAGCGGC+GGG | + | chr3.2:84727287-84727306 | MS.gene38353:CDS | 70.0% |
CCTCCCACCTCCGTTGCCGG+CGG | - | chr3.2:84727279-84727298 | None:intergenic | 75.0% | |
CCTCCGCCGGCAACGGAGGT+GGG | + | chr3.2:84727273-84727292 | MS.gene38353:CDS | 75.0% | |
! | CCCACCTCCGTTGCCGGCGG+AGG | - | chr3.2:84727276-84727295 | None:intergenic | 80.0% |
! | CCGCCGGCAACGGAGGTGGG+AGG | + | chr3.2:84727276-84727295 | MS.gene38353:CDS | 80.0% |
! | GCCTCCGCCGGCAACGGAGG+TGG | + | chr3.2:84727272-84727291 | MS.gene38353:CDS | 80.0% |
! | GGAGCCTCCGCCGGCAACGG+AGG | + | chr3.2:84727269-84727288 | MS.gene38353:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 84727239 | 84730024 | 84727239 | ID=MS.gene38353 |
chr3.2 | mRNA | 84727239 | 84730024 | 84727239 | ID=MS.gene38353.t1;Parent=MS.gene38353 |
chr3.2 | exon | 84727239 | 84728369 | 84727239 | ID=MS.gene38353.t1.exon1;Parent=MS.gene38353.t1 |
chr3.2 | CDS | 84727239 | 84728369 | 84727239 | ID=cds.MS.gene38353.t1;Parent=MS.gene38353.t1 |
chr3.2 | exon | 84729176 | 84729247 | 84729176 | ID=MS.gene38353.t1.exon2;Parent=MS.gene38353.t1 |
chr3.2 | CDS | 84729176 | 84729247 | 84729176 | ID=cds.MS.gene38353.t1;Parent=MS.gene38353.t1 |
chr3.2 | exon | 84729369 | 84729398 | 84729369 | ID=MS.gene38353.t1.exon3;Parent=MS.gene38353.t1 |
chr3.2 | CDS | 84729369 | 84729398 | 84729369 | ID=cds.MS.gene38353.t1;Parent=MS.gene38353.t1 |
chr3.2 | exon | 84729980 | 84730024 | 84729980 | ID=MS.gene38353.t1.exon4;Parent=MS.gene38353.t1 |
chr3.2 | CDS | 84729980 | 84730024 | 84729980 | ID=cds.MS.gene38353.t1;Parent=MS.gene38353.t1 |
Gene Sequence |
Protein sequence |