AlfalfaGEDB | MS.gene38438

M. sativa cultivar XinJiangDaYe / MS.gene38438

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38438.t1	XP_013460447.1	81.2	377	59	2	1	365	1	377	4.70E-137	497.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38438.t1	Q6S4P4	43.0	342	160	8	32	365	15	329	4.6e-56	219.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38438.t1	A0A072V8H4	81.2	377	59	2	1	365	1	377	3.4e-137	497.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene38438.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38438.t1	MTR_3g467120	91.247	377	21	2	1	365	1	377	0.0	690
MS.gene38438.t1	MTR_5g075390	73.054	334	66	6	32	365	49	358	4.77e-168	473
MS.gene38438.t1	MTR_3g094020	47.059	340	137	11	34	365	7	311	8.44e-87	265
MS.gene38438.t1	MTR_2g099050	50.890	281	95	10	34	285	72	338	5.49e-69	223
MS.gene38438.t1	MTR_6g034945	47.500	280	109	13	32	297	26	281	4.81e-56	186
MS.gene38438.t1	MTR_4g072090	45.122	246	76	4	75	262	213	457	6.27e-52	180
MS.gene38438.t1	MTR_4g072090	42.795	229	72	4	75	245	213	440	1.97e-43	156
MS.gene38438.t1	MTR_1g023690	39.615	260	94	6	61	257	220	479	5.70e-30	120
MS.gene38438.t1	MTR_2g090900	47.312	93	49	0	165	257	191	283	3.07e-19	87.8
MS.gene38438.t1	MTR_2g090900	47.312	93	49	0	165	257	191	283	3.78e-19	87.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38438.t1	AT2G40620	47.264	402	136	14	5	365	1	367	7.18e-99	298
MS.gene38438.t1	AT1G06850	56.115	278	100	6	78	354	70	326	6.04e-86	263
MS.gene38438.t1	AT2G31370	50.000	272	105	10	34	283	58	320	4.46e-67	216
MS.gene38438.t1	AT2G31370	50.000	272	105	10	34	283	58	320	9.03e-67	216
MS.gene38438.t1	AT2G31370	50.000	272	105	10	34	283	58	320	9.03e-67	216
MS.gene38438.t1	AT2G31370	50.000	272	105	10	34	283	58	320	9.03e-67	216
MS.gene38438.t1	AT2G31370	50.000	272	105	10	34	283	58	320	9.03e-67	216
MS.gene38438.t1	AT2G31370	50.000	272	105	10	34	283	58	320	9.03e-67	216
MS.gene38438.t1	AT2G31370	50.000	272	105	10	34	283	58	320	9.03e-67	216
MS.gene38438.t1	AT1G06070	51.779	253	102	7	34	273	73	318	3.09e-63	207

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Find 119 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTGGTATAATGTCAATT+GGG	0.538437	3.4:+63345817	None:intergenic
AAGGTGTGCCTGTTGTTCCA+TGG	0.533755	3.4:+63344942	None:intergenic
AATAACGACGGAGAGAAGAG+TGG	0.537621	3.4:-63346990	MS.gene38438:CDS
AATAGTAGCTACCATCTCGA+AGG	0.644154	3.4:+63344923	None:intergenic
AATCAGACCGGTTACAGTGC+CGG	0.524570	3.4:-63347029	MS.gene38438:CDS
ACCGCCAGCCTCGACGAGAT+CGG	0.521810	3.4:-63347125	MS.gene38438:CDS
ACCGGTTACAGTGCCGGCGC+CGG	0.530886	3.4:-63347023	MS.gene38438:CDS
ACGGTAGTTGATTTCGGAGT+GGG	0.509526	3.4:+63347208	None:intergenic
ACGTTGGAAGAAGGTGCATT+GGG	0.501336	3.4:+63347296	None:intergenic
ACTCTCACTTGCAGAGATTG+AGG	0.477229	3.4:+63344442	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAACTGAAGTCAACAAA+TGG	+	chr3.4:63346671-63346690	None:intergenic	30.0%
AAATGAATTGTTTGAACAGC+TGG	+	chr3.4:63346201-63346220	None:intergenic	30.0%
AAATGCATTTACAACTACTG+TGG	-	chr3.4:63345648-63345667	MS.gene38438:intron	30.0%
AACCTGGTATAATGTCAATT+GGG	+	chr3.4:63345930-63345949	None:intergenic	30.0%
ATTGGAGAAATTGTATGTTC+TGG	+	chr3.4:63347132-63347151	None:intergenic	30.0%
ATTGTGTAAAGTTTGGACTT+TGG	-	chr3.4:63345433-63345452	MS.gene38438:intron	30.0%
CCACTAGCTAATTATAACAA+AGG	+	chr3.4:63346924-63346943	None:intergenic	30.0%
CCATATTATAAGATTCAGAG+GGG	+	chr3.4:63347039-63347058	None:intergenic	30.0%
CCCATATTATAAGATTCAGA+GGG	+	chr3.4:63347040-63347059	None:intergenic	30.0%
CCCTCTGAATCTTATAATAT+GGG	-	chr3.4:63347037-63347056	MS.gene38438:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	63344427	63347339	63344427	ID=MS.gene38438
chr3.4	mRNA	63344427	63347339	63344427	ID=MS.gene38438.t1;Parent=MS.gene38438
chr3.4	exon	63346828	63347339	63346828	ID=MS.gene38438.t1.exon1;Parent=MS.gene38438.t1
chr3.4	CDS	63346828	63347339	63346828	ID=cds.MS.gene38438.t1;Parent=MS.gene38438.t1
chr3.4	exon	63345820	63345952	63345820	ID=MS.gene38438.t1.exon2;Parent=MS.gene38438.t1
chr3.4	CDS	63345820	63345952	63345820	ID=cds.MS.gene38438.t1;Parent=MS.gene38438.t1
chr3.4	exon	63344935	63345019	63344935	ID=MS.gene38438.t1.exon3;Parent=MS.gene38438.t1
chr3.4	CDS	63344935	63345019	63344935	ID=cds.MS.gene38438.t1;Parent=MS.gene38438.t1
chr3.4	exon	63344427	63344794	63344427	ID=MS.gene38438.t1.exon4;Parent=MS.gene38438.t1
chr3.4	CDS	63344427	63344794	63344427	ID=cds.MS.gene38438.t1;Parent=MS.gene38438.t1

Gene Sequence

>MS.gene38438

ATGGCAACACGAATGCAAGATCCCAATGCACCTTCTTCCAACGTCTTCATCCGCGGCCACGTCAACGGCGTCACCGTCGCCGGCGAACCCCACTCTCACCACCGTCGCGCCCACTCCGAAATCAACTACCGTCTCCCCGACGACATTATGGACCTCTCCCCTTCCGATCCCTTAATCGGCGGCGGATCCTCCACCGCCAGCCTCGACGAGATCGGATCCGAAGACGATCTCTTCTTCACCTACATTGACGTCGAGAAGCTCGGTGGAGTAACAAACCGTTCGAATTCGAATCAGACCGGTTACAGTGCCGGCGCCGGAACGAGTGGGAATAACGACGGAGAGAAGAGTGGGAATGATGTTACGACGCCGAGAACGAGGCATAGACATAGCTGCTCGGTGGATGGATTAACTTCGACGACGAATATGTTTGGAGAGATCATGGATGCGAAGAAAGCTATGCCTCCTGATAAACTCGCTGAGCTTTGGACGATTGATCCAAAACGTGCTAAGAGGTTTTTTTCTTGATTTATCTTCGTTTCAAAATGTATCAACTTTTTTGTGATTGAATTGGATTAATGTTGATTTTTTTTTCGTAGATTTATCGATTTATGATCTTAATTGTCATTAAAATATAATTATTTTGTGTTGTTGTTATTAATTACTTATTAATTATAGAAATTGATTGTTAGTTTGCAAAATTAAGTAGTTGATTATGATTATTTGATCTTAAAGTATTGTTTTTTTCGGAATGTTAATGTTGAAATGGAAATTTTAATGTATGTTTGGATTTAGGGTGAGATTGACAAAATCACGGTGAGTTGTCGTGGTTTTAGAAAAAACTATAATTTGGAGCTTCAAGACTGATGATACCGTGATTTTGCCAAACTCGCCACTCATCTAGACATATAGTTAGTGATTGCAGTTTTGTTATGATTGTGTAAAGAAACATGGTATTTGATCCTTCAAAAAAAAAAACATGGTATTTGATGATTGCGGTTTTGTTGTGATTGTGTAAAGTTTGGACTTTGGAGATCTCGAAAAACACTTTTTTTTGTACCAAAAAAACTCTTATGCTTCATGTTTTGTTTAAAAATCATGTTTAATCTAATGACATTATTTGGTGTTTTACTTACCATTTCTGAATAAATGGAAACAGTTTAGGATATTCCTTTTTTTGGTTAGATGATTTGAAATCTAGTTGTTTGGGGGTATTTTCTAAGAAAATGCATTTACAACTACTGTGGATTTGTAATTTCTAACAACTATACATGCTTCTTGAATGTTGAGTGTTTAAATGGGATGTGAGGCAGAAATCATGAGTGAGGTTTATGCCGTAGTTGCTGCTTTAGTTTCATTTTAATCTCAGAAGTTTTGTTGTTATGTGCAGAATACTTGCAAACCGGCAATCTGCTGCGCGTTCAAAGGAGAGAAAGGCCCGCTATATACAAGAGCTTGAGCGCAAGGTTCAGACCCTTCAAACAGAGGCTACAACTCTCTCCGCCCAATTGACATTATACCAGGTTAGTTTCAACTTAGTCTATCCTTGACACAACAAAACAGAAAGTTCTCTGTATATTAGCCCTTTTGTTTATTCGAGCTGCAATTTATGCTAGAAATGTCTAAGAAATTAGTTGATCATGACTTTGATATGATATTGCAGTTTCTTTACATTTTGCGTCTTTTGGTTATTGTCTTGGAATTCTTATAAAGTTATAATATAACATGTTTGTCTGCAAATATTTCTTCTTCGGCCTTGTATAAGCATTTCCAACCAGCTGTTCAAACAATTCATTTAAACTATAATAGGAGATATATCTTTCTTGAAATTGTTCTTAACAATGAAAATATCACATTTAGATAAGAGCAATGCTATATCTCTAGAAAAATAACATCAAGAATTCTTCAAGAATAAATAGCAACCAATCACAATGCACTATTTGCCACAATTCAAGGAGGTGTGGCTGAAAAATAGGAAGTGAACAAATAAATCATGCAATTAAAACTTGCCAGCTGTGTCTTGAAAAATTCTTGATGCTATTTTCTAGAGAAATAGCATTTTCCTTTAGATAATTGGATCGTGGACACACACTCTTCTTGTATTCTCTTCACAAAATCCTTTCTTTCTTCTAGTAGATAAATCTATATAGTAATTGATCATGTTACAAAATAGTAATTTAGATTGGGAAGTTATTTTAGTAATGGCTGGTATTGATGCTGGTTTTTAATTATAATTTTTAGTAACCATTTGTTGACTTCAGTTGTTTGTTATACACAAACTTATATGTGATAGGAATTTGTCTCATAATTATTGATTTTTCAGAGGGACACAACTGGTCTGAGTACTGAAAATACCGAGCTCAAGCTCCGTCTCCAATCCATGGAACAACAGGCACACCTTCGAGATGGTAGCTACTATTAAACCAGTCACTTTCTTATGATACGATTAGATACATGCTTAATGATTTACATTTTTCAAATGATAATTTTTAAAATGCCTTTGTTATAATTAGCTAGTGGTATTGAAAATTGTTTCTATTTAATGCAGCTCTTAATGATGCGTTGATGAAGGAAGTTGATAGGCTTAAGATTGCTACCGGGGAGGCAATGAACCCCTCTGAATCTTATAATATGGGAATGCACCAGATGCAATTTGCAGGGTCAAATTTCTTTTCAATGCCACAACATTCAGGTCCTTCAAGTCACCAGAACATACAATTTCTCCAATTTGCTCACTCACCATCTGACATGCCGAATTATCAGTTGCAACAAACCAATTCTCACCAAATCTCAGATAGGCTGCAAAACGATCAGCTCGGTCGTTTTCAGGGGCTTGACATCAGTAGCAAAGGAACAACCCTCGTGAAATCTGAAGCCCCCTCAATCTCTGCAAGTGAGAGTAGCACTACATTTTGA

Protein sequence

>MS.gene38438.t1

MATRMQDPNAPSSNVFIRGHVNGVTVAGEPHSHHRRAHSEINYRLPDDIMDLSPSDPLIGGGSSTASLDEIGSEDDLFFTYIDVEKLGGVTNRSNSNQTGYSAGAGTSGNNDGEKSGNDVTTPRTRHRHSCSVDGLTSTTNMFGEIMDAKKAMPPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQSMEQQAHLRDALNDALMKEVDRLKIATGEAMNPSESYNMGMHQMQFAGSNFFSMPQHSGPSSHQNIQFLQFAHSPSDMPNYQLQQTNSHQISDRLQNDQLGRFQGLDISSKGTTLVKSEAPSISASESSTTF