AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene38589

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38589.t1 MTR_5g076070 48.485 264 134 1 38 301 19 280 2.81e-86 275
MS.gene38589.t1 MTR_1g070355 46.863 271 144 0 39 309 39 309 4.77e-83 276
MS.gene38589.t1 MTR_6g022080 47.000 200 106 0 39 238 50 249 1.48e-60 205
MS.gene38589.t1 MTR_6g022070 55.090 167 75 0 369 535 1 167 1.03e-58 203
MS.gene38589.t1 MTR_6g022070 31.538 130 81 4 615 741 167 291 2.46e-11 66.2
MS.gene38589.t1 MTR_8g066350 51.872 187 67 2 1 182 1 169 7.50e-53 181
MS.gene38589.t1 MTR_2g101460 49.219 128 65 0 55 182 36 163 2.59e-34 130
MS.gene38589.t1 MTR_2g101460 46.154 143 77 0 40 182 11 153 5.25e-34 129
MS.gene38589.t1 MTR_6g053140 43.949 157 76 3 25 180 58 203 4.43e-32 124
MS.gene38589.t1 MTR_6g051425 29.070 258 177 4 86 338 29 285 1.05e-31 127
MS.gene38589.t1 MTR_7g446480 37.500 176 108 1 151 324 140 315 1.14e-30 123
MS.gene38589.t1 MTR_7g446510 37.500 176 108 1 151 324 155 330 2.60e-30 122
MS.gene38589.t1 MTR_7g446520 30.000 280 172 5 33 309 49 307 1.11e-29 121
MS.gene38589.t1 MTR_3g448650 41.406 128 70 1 23 150 36 158 9.68e-27 108
MS.gene38589.t1 MTR_1g052260 43.511 131 65 3 35 156 28 158 4.59e-26 105
MS.gene38589.t1 MTR_8g045760 43.529 85 48 0 203 287 1 85 5.93e-22 93.6
MS.gene38589.t1 MTR_0268s0050 36.879 141 87 2 616 755 114 253 1.17e-21 95.9
MS.gene38589.t1 MTR_0060s0090 38.400 125 77 0 35 159 17 141 1.19e-21 92.8
MS.gene38589.t1 MTR_3g450850 28.512 242 159 8 86 315 59 298 1.59e-19 91.3
MS.gene38589.t1 MTR_4g035820 25.263 285 187 7 43 319 58 324 2.06e-19 93.6
MS.gene38589.t1 MTR_4g050510 36.090 133 71 2 60 192 64 182 2.67e-16 79.0
MS.gene38589.t1 MTR_6g463250 39.394 99 45 2 61 159 75 158 5.28e-16 77.0
MS.gene38589.t1 MTR_0604s0020 48.649 74 38 0 85 158 3 76 6.37e-16 73.6
MS.gene38589.t1 MTR_7g028855 27.749 191 135 2 25 215 74 261 1.91e-14 77.0
MS.gene38589.t1 MTR_2g069720 35.238 105 66 1 4 108 29 131 2.89e-14 72.0
MS.gene38589.t1 MTR_0645s0010 42.857 91 49 2 447 537 1 88 6.69e-14 69.3
MS.gene38589.t1 MTR_0558s0020 24.082 245 167 5 89 314 51 295 1.20e-13 72.8
MS.gene38589.t1 MTR_0402s0040 28.655 171 106 5 84 247 36 197 2.03e-12 70.9
MS.gene38589.t1 MTR_8g446020 25.140 179 130 2 138 314 79 255 3.37e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38589.t1 AT4G38180 31.947 601 382 8 44 632 52 637 1.70e-98 323
MS.gene38589.t1 AT3G22170 27.856 639 401 14 14 629 17 618 2.50e-73 256
MS.gene38589.t1 AT3G22170 27.856 639 401 14 14 629 17 618 2.50e-73 256
MS.gene38589.t1 AT1G76320 29.711 589 378 14 86 663 9 572 7.92e-73 251
MS.gene38589.t1 AT1G76320 29.373 606 389 15 86 680 9 586 1.07e-72 252
MS.gene38589.t1 AT1G76320 29.373 606 389 15 86 680 9 586 1.07e-72 252
MS.gene38589.t1 AT1G76320 29.373 606 389 15 86 680 9 586 1.30e-72 252
MS.gene38589.t1 AT4G15090 27.679 560 384 9 85 632 62 612 1.74e-72 253
MS.gene38589.t1 AT4G15090 27.679 560 384 9 85 632 62 612 1.74e-72 253
MS.gene38589.t1 AT4G15090 27.679 560 384 9 85 632 62 612 1.74e-72 253
MS.gene38589.t1 AT4G15090 27.679 560 384 9 85 632 62 612 1.74e-72 253
MS.gene38589.t1 AT4G15090 27.679 560 384 9 85 632 62 612 1.74e-72 253
MS.gene38589.t1 AT2G27110 27.536 552 363 10 89 634 64 584 1.84e-69 246
MS.gene38589.t1 AT2G27110 27.536 552 363 10 89 634 64 584 1.84e-69 246
MS.gene38589.t1 AT2G27110 30.583 412 275 4 228 634 34 439 6.88e-67 236
MS.gene38589.t1 AT3G06250 27.057 547 346 10 89 629 205 704 1.96e-66 236
MS.gene38589.t1 AT3G06250 27.057 547 346 10 89 629 205 704 1.96e-66 236
MS.gene38589.t1 AT3G06250 27.057 547 346 10 89 629 205 704 1.96e-66 236
MS.gene38589.t1 AT5G18960 26.776 549 348 12 89 629 226 728 3.74e-62 224
MS.gene38589.t1 AT5G18960 26.776 549 348 12 89 629 226 728 3.74e-62 224
MS.gene38589.t1 AT4G38170 30.137 365 241 6 273 629 41 399 9.69e-59 209
MS.gene38589.t1 AT1G80010 29.174 569 364 14 86 629 107 661 6.67e-57 208
MS.gene38589.t1 AT4G19990 25.514 584 366 13 86 643 33 573 3.07e-54 201
MS.gene38589.t1 AT4G19990 25.514 584 366 13 86 643 33 573 3.07e-54 201
MS.gene38589.t1 AT4G19990 25.514 584 366 13 86 643 47 587 3.14e-54 201
MS.gene38589.t1 AT4G19990 25.514 584 366 13 86 643 33 573 3.50e-54 201
MS.gene38589.t1 AT4G19990 25.514 584 366 13 86 643 33 573 5.74e-54 200
MS.gene38589.t1 AT4G19990 25.514 584 366 13 86 643 33 573 5.74e-54 200
MS.gene38589.t1 AT2G32250 28.325 406 278 5 266 666 146 543 5.54e-53 197
MS.gene38589.t1 AT2G32250 28.325 406 278 5 266 666 146 543 6.02e-53 197
MS.gene38589.t1 AT2G32250 28.325 406 278 5 266 666 187 584 6.13e-53 197
MS.gene38589.t1 AT2G32250 28.325 406 278 5 266 666 187 584 7.91e-53 197
MS.gene38589.t1 AT2G32250 28.325 406 278 5 266 666 187 584 7.91e-53 197
MS.gene38589.t1 AT2G32250 28.325 406 278 5 266 666 187 584 7.91e-53 197
MS.gene38589.t1 AT2G32250 28.325 406 278 5 266 666 187 584 8.06e-53 197
MS.gene38589.t1 AT2G32250 28.325 406 278 5 266 666 187 584 8.06e-53 197
MS.gene38589.t1 AT5G28530 25.532 564 389 11 86 628 67 620 1.24e-52 195
MS.gene38589.t1 AT5G28530 25.524 572 375 13 86 628 67 616 1.68e-52 194
MS.gene38589.t1 AT5G28530 25.524 572 375 13 86 628 67 616 1.68e-52 194
MS.gene38589.t1 AT1G10240 25.623 562 392 11 80 626 54 604 1.77e-51 191
MS.gene38589.t1 AT1G10240 25.623 562 392 11 80 626 54 604 1.77e-51 191
MS.gene38589.t1 AT4G19990 24.955 553 355 11 112 643 3 516 3.18e-51 191
MS.gene38589.t1 AT1G52520 25.714 630 404 16 29 629 44 638 3.61e-48 182
MS.gene38589.t1 AT5G28530 23.188 552 354 12 86 628 67 557 6.99e-34 138
MS.gene38589.t1 AT5G28530 23.214 560 340 14 86 628 67 553 1.07e-33 138

Find 157 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTAGTTCTAACCCTATT+TGG 0.128040 3.3:+81810806 None:intergenic
AGTTGAGTATAGATGATTTA+TGG 0.151163 3.3:-81812737 MS.gene38589:CDS
GTTTGAATTACATGAGATTT+AGG 0.165065 3.3:-81811462 MS.gene38589:CDS
AGATGACAAATTATGATATT+TGG 0.232106 3.3:-81812371 MS.gene38589:CDS
CATGCACTGTTATTGATTCT+AGG 0.243686 3.3:-81811300 MS.gene38589:CDS
GAAGGCCTTCACGCACAATT+TGG 0.260435 3.3:-81811541 MS.gene38589:CDS
AGGGAAGTAGAAGCAGATTT+TGG 0.266967 3.3:-81811442 MS.gene38589:CDS
GCAACCTCTTCTGTTGTTCC+AGG 0.291028 3.3:+81812840 None:intergenic
AACGAGGAGTTTGGCGATAT+CGG 0.298205 3.3:-81810605 MS.gene38589:CDS
AGCAGACCTTTGTATGTTAT+AGG 0.299097 3.3:-81812596 MS.gene38589:CDS
AAAATACAATACTATGATTA+TGG 0.299516 3.3:+81811977 None:intergenic
GAAGGCTTTCACATTTGTTT+TGG 0.311863 3.3:-81812116 MS.gene38589:CDS
CCTATACTTGAGAGTGTTGC+TGG 0.316186 3.3:-81811382 MS.gene38589:CDS
GAATCCAATGCCATTGATAA+TGG 0.319184 3.3:-81810641 MS.gene38589:CDS
AGAAATCAAGCAAATTGTTT+TGG 0.327261 3.3:+81811503 None:intergenic
TTTAACTTGTTATGTTTATA+CGG 0.327417 3.3:-81811272 MS.gene38589:CDS
TTTGAATTACATGAGATTTA+GGG 0.329750 3.3:-81811461 MS.gene38589:CDS
TTGCTTATTATGTAGGATTT+GGG 0.330556 3.3:-81812906 MS.gene38589:intron
ATCCGTGGTAAATTCTTTGC+TGG 0.332956 3.3:-81811586 MS.gene38589:CDS
TTTACCATGGTCCCTTTGTT+TGG 0.333858 3.3:+81810754 None:intergenic
AGACACTGCTGAATCCAAAT+AGG 0.334078 3.3:-81810820 MS.gene38589:CDS
ACCCAAGAGCACATGTAATA+TGG 0.338001 3.3:-81811240 MS.gene38589:CDS
CGATATCGGAAATGTTGATA+TGG 0.343004 3.3:-81810591 MS.gene38589:intron
GGCAAAGGTGTTTCTAAAAC+AGG 0.346039 3.3:+81811403 None:intergenic
TGCCATATTACATGTGCTCT+TGG 0.350833 3.3:+81811238 None:intergenic
ATACAAAGGTCTGCTGAATT+AGG 0.354056 3.3:+81812604 None:intergenic
AAGATATTCACACGCGGCTT+TGG 0.358026 3.3:+81812197 None:intergenic
TCCTCAACAAAGGCAATATT+AGG 0.358068 3.3:+81810842 None:intergenic
TTAGCGATGAAACAATGTTT+TGG 0.375310 3.3:-81812161 MS.gene38589:CDS
CCGGAAGCATTCCCTTGAAT+TGG 0.376341 3.3:+81812403 None:intergenic
TTTGAACATCGTAACCTTGC+CGG 0.386902 3.3:-81811116 MS.gene38589:CDS
ATTGATGAGAACGAGGAGTT+TGG 0.387151 3.3:-81810614 MS.gene38589:CDS
GTGGTTACTTGAACAACTAT+TGG 0.394699 3.3:-81811914 MS.gene38589:CDS
GAACATGCTCTCCGTAGAAT+TGG 0.400568 3.3:+81811322 None:intergenic
AAGGCCTTCACGCACAATTT+GGG 0.401284 3.3:-81811540 MS.gene38589:CDS
CGGCATAAGGTTGATGATAA+AGG 0.401985 3.3:-81812138 MS.gene38589:CDS
CCGCACCTCACACGAGCTCT+TGG 0.404430 3.3:+81812522 None:intergenic
GATATGATGGTCACTGAGTT+TGG 0.407993 3.3:-81811673 MS.gene38589:CDS
AAATTCAGAAATTGTATGTT+GGG 0.414460 3.3:-81811730 MS.gene38589:CDS
TTGGACTGGAAAATCACAAA+TGG 0.423074 3.3:-81811654 MS.gene38589:CDS
CACTTGAAGGTGAGACTAGT+TGG 0.424002 3.3:+81811202 None:intergenic
GTTCTATCTCAAAATCCATT+TGG 0.424686 3.3:-81810674 MS.gene38589:CDS
TGTTGGGTGACTACGATGTT+GGG 0.425474 3.3:-81811714 MS.gene38589:CDS
CCAATTCAAGGGAATGCTTC+CGG 0.427188 3.3:-81812403 MS.gene38589:CDS
TGAACACGTGATAGCCGTTT+TGG 0.429315 3.3:-81811143 MS.gene38589:CDS
GGAAAATCACAAATGGGTTA+AGG 0.431588 3.3:-81811647 MS.gene38589:CDS
CCTTTCGCATGAGCACTTGA+AGG 0.445772 3.3:+81811189 None:intergenic
CCAAATAGGGTTAGAACTAA+AGG 0.448859 3.3:-81810806 MS.gene38589:CDS
TTGGGGAGTTTAAGCGTAAG+TGG 0.449176 3.3:-81811696 MS.gene38589:CDS
TGTGGTATATGTAGGATTGT+AGG 0.460432 3.3:-81810719 MS.gene38589:CDS
GCCATATTACATGTGCTCTT+GGG 0.461414 3.3:+81811239 None:intergenic
CCAGCAACACTCTCAAGTAT+AGG 0.471863 3.3:+81811382 None:intergenic
TTGGCAATGAGAAAAGCTAT+TGG 0.473791 3.3:-81811844 MS.gene38589:CDS
GAGGTTGCAGATGGCACTAA+TGG 0.478378 3.3:-81812825 MS.gene38589:CDS
GACACTGCTGAATCCAAATA+GGG 0.480012 3.3:-81810819 MS.gene38589:CDS
GATTCAGCTTGATTACCAAA+TGG 0.482585 3.3:+81810659 None:intergenic
GGTTTGTTTGCTAATGAAGC+TGG 0.482853 3.3:-81812300 MS.gene38589:CDS
GGCAACTGCCGTGAATTGCT+TGG 0.487437 3.3:-81812787 MS.gene38589:CDS
AATGTTGGATGACCAATTCA+AGG 0.489800 3.3:-81812415 MS.gene38589:CDS
ATCAATGTGTCCATTATCAA+TGG 0.492096 3.3:+81810631 None:intergenic
AATGTCTTCCAAGCAATTCA+CGG 0.494836 3.3:+81812779 None:intergenic
TCTTATTCCAACCAATTCTA+CGG 0.498289 3.3:-81811333 MS.gene38589:CDS
TTTGTCATCTTCCTATGTGC+CGG 0.501947 3.3:+81812384 None:intergenic
TGGACTGGAAAATCACAAAT+GGG 0.503516 3.3:-81811653 MS.gene38589:CDS
CCTTTGTATGTTATAGGCAA+GGG 0.503564 3.3:-81812590 MS.gene38589:CDS
CAAAGAATTTACCACGGATG+TGG 0.505462 3.3:+81811590 None:intergenic
GTGTCCATTATCAATGGCAT+TGG 0.506607 3.3:+81810637 None:intergenic
TCATAATCGCAAGTCTTGTC+CGG 0.508285 3.3:-81810696 MS.gene38589:CDS
TGAACAACTATTGGAAGCAA+TGG 0.514794 3.3:-81811905 MS.gene38589:CDS
GCCGCAAAAGCAAAGTTGTA+AGG 0.517061 3.3:-81812641 MS.gene38589:CDS
ATACTTGTTCCTCTTGTATG+TGG 0.519775 3.3:+81812035 None:intergenic
AAAATTCAGAAATTGTATGT+TGG 0.523468 3.3:-81811731 MS.gene38589:CDS
CACAAACTTGTGGTATATGT+AGG 0.523563 3.3:-81810727 MS.gene38589:CDS
ACCTTTGTATGTTATAGGCA+AGG 0.523646 3.3:-81812591 MS.gene38589:CDS
CACTAATGGTAACAAATTTG+AGG 0.523859 3.3:-81812811 MS.gene38589:CDS
AATGAGCATAGTTATGATCC+TGG 0.524091 3.3:-81812858 MS.gene38589:CDS
CCTTCAAGTGCTCATGCGAA+AGG 0.525167 3.3:-81811189 MS.gene38589:CDS
CTCCAGAAAATACAACCAAT+GGG 0.526122 3.3:+81812007 None:intergenic
TGCGAAAGGTTTGAGTCCCT+CGG 0.526391 3.3:-81811175 MS.gene38589:CDS
ACACAATCTGTGGTGACACT+TGG 0.527185 3.3:+81811810 None:intergenic
CACAATCTGTGGTGACACTT+GGG 0.528250 3.3:+81811811 None:intergenic
ACCTAATATTGCCTTTGTTG+AGG 0.528635 3.3:-81810843 MS.gene38589:CDS
GCCGTGGCAGCTGTGAAGTG+TGG 0.531456 3.3:-81810959 MS.gene38589:CDS
GAACAACTATTGGAAGCAAT+GGG 0.533141 3.3:-81811904 MS.gene38589:CDS
GATGTTCAAATACACCAAAA+CGG 0.533380 3.3:+81811129 None:intergenic
TAAGCGTAAGTGGGATATGA+TGG 0.536902 3.3:-81811686 MS.gene38589:CDS
AAATTGATTATTGTTGACAT+TGG 0.538470 3.3:+81811759 None:intergenic
GGGAAATTTGTTATTGTCTG+AGG 0.539782 3.3:-81812886 MS.gene38589:CDS
GAACAAGTATTTGTGCCCAT+TGG 0.543961 3.3:-81812022 MS.gene38589:CDS
ACTCCAGAAAATACAACCAA+TGG 0.549257 3.3:+81812006 None:intergenic
ATGTTGGGTGACTACGATGT+TGG 0.550614 3.3:-81811715 MS.gene38589:CDS
TGAACATAATCATTCAATGT+TGG 0.554622 3.3:-81812430 MS.gene38589:CDS
TGTACGATAAGCGTCATATG+TGG 0.557922 3.3:-81811621 MS.gene38589:CDS
AGTCATAACTGATGGTGACT+TGG 0.558049 3.3:-81811863 MS.gene38589:CDS
AGGGTTAGAACTAAAGGATG+TGG 0.560571 3.3:-81810800 MS.gene38589:CDS
TTGTTTGCTAATGAAGCTGG+TGG 0.564693 3.3:-81812297 MS.gene38589:CDS
CTTCACATCGAGAAGTTGTA+CGG 0.567284 3.3:+81811560 None:intergenic
ATGAGCAACATGCGACAAGT+TGG 0.567690 3.3:-81812345 MS.gene38589:CDS
GTGCATATTGATGTAAATAG+TGG 0.570026 3.3:-81812480 MS.gene38589:CDS
ATGCTCTCCGTAGAATTGGT+TGG 0.571506 3.3:+81811326 None:intergenic
ATGTGGTTGAACTATGTAAG+AGG 0.575654 3.3:-81810985 MS.gene38589:CDS
TCACCCAGTCGATTCACCAC+AGG 0.578294 3.3:-81813000 MS.gene38589:intron
TGAAACAAGGCTATCCGGCA+AGG 0.583237 3.3:+81811102 None:intergenic
AACTATTGGAAGCAATGGGT+GGG 0.587808 3.3:-81811900 MS.gene38589:CDS
AATGTACTACGCAAAAGTGT+AGG 0.588834 3.3:+81810932 None:intergenic
AGGGAATGCTTCCGGCACAT+AGG 0.589796 3.3:-81812395 MS.gene38589:CDS
CAAACCTGTGGTGAATCGAC+TGG 0.589959 3.3:+81812996 None:intergenic
GATGGTCACTGAGTTTGGAC+TGG 0.590126 3.3:-81811668 MS.gene38589:CDS
CAACTATTGGAAGCAATGGG+TGG 0.590247 3.3:-81811901 MS.gene38589:CDS
TGGGGAGTTTAAGCGTAAGT+GGG 0.593817 3.3:-81811695 MS.gene38589:CDS
CGTGTTCACATGCGATGCCG+AGG 0.593869 3.3:+81811158 None:intergenic
GGTTCTAGAAAATGCATGCA+AGG 0.596751 3.3:-81810885 MS.gene38589:CDS
ATGTTGGATGACCAATTCAA+GGG 0.598320 3.3:-81812414 MS.gene38589:CDS
CCCTTGCCTATAACATACAA+AGG 0.598990 3.3:+81812590 None:intergenic
AAAGAATTTACCACGGATGT+GGG 0.599554 3.3:+81811591 None:intergenic
ACCTCCCAAATTGTGCGTGA+AGG 0.601483 3.3:+81811536 None:intergenic
TTGCTGGTGAGCTGTATACA+AGG 0.604141 3.3:-81811366 MS.gene38589:CDS
GGTAAGTCAGTTTACACATG+TGG 0.605810 3.3:-81811002 MS.gene38589:CDS
GGGATTAGTAAAGAGAAAAG+TGG 0.608343 3.3:-81812570 MS.gene38589:CDS
ACAATCTGTGGTGACACTTG+GGG 0.609322 3.3:+81811812 None:intergenic
GTCACCACAGATTGTGTGCA+TGG 0.614597 3.3:-81811804 MS.gene38589:CDS
CCGTGGCAGCTGTGAAGTGT+GGG 0.616597 3.3:-81810958 MS.gene38589:CDS
CCTACGTCAGTCATAACTGA+TGG 0.619011 3.3:-81811871 MS.gene38589:CDS
CGTACAACTTCTCGATGTGA+AGG 0.624034 3.3:-81811559 MS.gene38589:CDS
GCCTTCACGCACAATTTGGG+AGG 0.625740 3.3:-81811537 MS.gene38589:CDS
GTACGATAAGCGTCATATGT+GGG 0.627193 3.3:-81811620 MS.gene38589:CDS
CCCACACTTCACAGCTGCCA+CGG 0.628270 3.3:+81810958 None:intergenic
ATAAGGTTGATGATAAAGGA+AGG 0.635329 3.3:-81812134 MS.gene38589:CDS
GTAAACTGACTTACCATGGT+AGG 0.636455 3.3:+81811010 None:intergenic
GTTGGGTGACTACGATGTTG+GGG 0.638884 3.3:-81811713 MS.gene38589:CDS
TGGGCTACTGCCCACATCCG+TGG 0.639851 3.3:-81811601 MS.gene38589:CDS
ACAACAGAAGAGGTTGCAGA+TGG 0.645232 3.3:-81812834 MS.gene38589:CDS
ACACTCTCAAGTATAGGCAA+AGG 0.646441 3.3:+81811388 None:intergenic
CAGCAGTGTCTCCTCAACAA+AGG 0.649281 3.3:+81810832 None:intergenic
CCAAGAGCTCGTGTGAGGTG+CGG 0.650655 3.3:-81812522 MS.gene38589:CDS
AAACCTGTGGTGAATCGACT+GGG 0.650947 3.3:+81812997 None:intergenic
ATGTGTAAACTGACTTACCA+TGG 0.652139 3.3:+81811006 None:intergenic
TTTAATTGAATCTCACACCA+AGG 0.652944 3.3:-81810906 MS.gene38589:CDS
AAAACCAAACAAAGGGACCA+TGG 0.653474 3.3:-81810758 MS.gene38589:CDS
TGATCCTGGAACAACAGAAG+AGG 0.655464 3.3:-81812844 MS.gene38589:CDS
ATATGTACAATGAACAAGAG+AGG 0.660521 3.3:-81812245 MS.gene38589:CDS
TAATGGTAACAAATTTGAGG+AGG 0.661974 3.3:-81812808 MS.gene38589:CDS
GTGTTCACATGCGATGCCGA+GGG 0.663133 3.3:+81811159 None:intergenic
AAAGTTGTAAGGAACAACAA+AGG 0.671963 3.3:-81812630 MS.gene38589:CDS
TTGATGTAAATAGTGGTCGG+TGG 0.686103 3.3:-81812473 MS.gene38589:CDS
GGTTGAACTATGTAAGAGGA+TGG 0.689381 3.3:-81810981 MS.gene38589:CDS
TGTTTCAAATGATCCTACCA+TGG 0.691975 3.3:-81811023 MS.gene38589:CDS
AAACAGAACATACATACGTG+TGG 0.692150 3.3:-81811933 MS.gene38589:CDS
GATGCCATGCACACAATCTG+TGG 0.697895 3.3:+81811800 None:intergenic
ACTATGTAAGAGGATGGCCG+TGG 0.705911 3.3:-81810975 MS.gene38589:CDS
ATCCAGCAAAGAATTTACCA+CGG 0.708229 3.3:+81811584 None:intergenic
TGGACACATTGATGAGAACG+AGG 0.714782 3.3:-81810621 MS.gene38589:CDS
ATATTGATGTAAATAGTGGT+CGG 0.715441 3.3:-81812476 MS.gene38589:CDS
CCATCAGTTATGACTGACGT+AGG 0.724351 3.3:+81811871 None:intergenic
GTGTGCCAAGAGCTCGTGTG+AGG 0.742198 3.3:-81812527 MS.gene38589:CDS
GCTTTCAAGATATTCACACG+CGG 0.773852 3.3:+81812191 None:intergenic
TGCTGGTGAGCTGTATACAA+GGG 0.788960 3.3:-81811365 MS.gene38589:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATACAATACTATGATTA+TGG + chr3.3:81811538-81811557 None:intergenic 15.0%
!! ACATACAAAAAACAAATATA+AGG + chr3.3:81810553-81810572 None:intergenic 15.0%
!!! TATTTTGTAGTTGTTAAAAA+TGG - chr3.3:81812985-81813004 MS.gene38589:intron 15.0%
!!! TTTAACTTGTTATGTTTATA+CGG - chr3.3:81812240-81812259 MS.gene38589:CDS 15.0%
!! AAAATTCAGAAATTGTATGT+TGG - chr3.3:81811781-81811800 MS.gene38589:CDS 20.0%
!! AAATTCAGAAATTGTATGTT+GGG - chr3.3:81811782-81811801 MS.gene38589:CDS 20.0%
!! AAATTGATTATTGTTGACAT+TGG + chr3.3:81811756-81811775 None:intergenic 20.0%
!! AGATGACAAATTATGATATT+TGG - chr3.3:81811141-81811160 MS.gene38589:CDS 20.0%
!! ATTTCAATTGCTTATTATGT+AGG - chr3.3:81810599-81810618 MS.gene38589:CDS 20.0%
!! TACAAAAAACAAATATAAGG+AGG + chr3.3:81810550-81810569 None:intergenic 20.0%
!! TTTGAATTACATGAGATTTA+GGG - chr3.3:81812051-81812070 MS.gene38589:CDS 20.0%
!!! TCATTTGAAACATCATTTTT+AGG + chr3.3:81812481-81812500 None:intergenic 20.0%
! AGTTGAGTATAGATGATTTA+TGG - chr3.3:81810775-81810794 MS.gene38589:CDS 25.0%
! ATATTGATGTAAATAGTGGT+CGG - chr3.3:81811036-81811055 MS.gene38589:CDS 25.0%
! ATTGCTTATTATGTAGGATT+TGG - chr3.3:81810605-81810624 MS.gene38589:CDS 25.0%
! GTTTGAATTACATGAGATTT+AGG - chr3.3:81812050-81812069 MS.gene38589:CDS 25.0%
! TAGCAAACAAACCAAAAATA+TGG + chr3.3:81811205-81811224 None:intergenic 25.0%
! TGAACATAATCATTCAATGT+TGG - chr3.3:81811082-81811101 MS.gene38589:CDS 25.0%
! TTGCTTATTATGTAGGATTT+GGG - chr3.3:81810606-81810625 MS.gene38589:CDS 25.0%
! TTTGTGTTTGTAAATTTGCA+GGG - chr3.3:81813019-81813038 MS.gene38589:CDS 25.0%
!! AGAAATCAAGCAAATTGTTT+TGG + chr3.3:81812012-81812031 None:intergenic 25.0%
!! AGATATCATTTTGTAGATGT+TGG - chr3.3:81810798-81810817 MS.gene38589:CDS 25.0%
!! ATCAAGACAAACCATATTTT+TGG - chr3.3:81811191-81811210 MS.gene38589:CDS 25.0%
!! CAAAGAGATTATGAGATTTT+TGG - chr3.3:81811434-81811453 MS.gene38589:CDS 25.0%
!! GATTGAATCTTTTGCATTTT+TGG + chr3.3:81812446-81812465 None:intergenic 25.0%
!!! AAGTTTGTGTTTTTTTACCA+TGG + chr3.3:81812774-81812793 None:intergenic 25.0%
!!! GATTTCAAAAAGTTGGTTTT+CGG - chr3.3:81811237-81811256 MS.gene38589:CDS 25.0%
AAAGTTGTAAGGAACAACAA+AGG - chr3.3:81810882-81810901 MS.gene38589:CDS 30.0%
ATATGTACAATGAACAAGAG+AGG - chr3.3:81811267-81811286 MS.gene38589:CDS 30.0%
ATCAATGTGTCCATTATCAA+TGG + chr3.3:81812884-81812903 None:intergenic 30.0%
CACTAATGGTAACAAATTTG+AGG - chr3.3:81810701-81810720 MS.gene38589:CDS 30.0%
GATGTTCAAATACACCAAAA+CGG + chr3.3:81812386-81812405 None:intergenic 30.0%
GGTAAAAAAACACAAACTTG+TGG - chr3.3:81812775-81812794 MS.gene38589:CDS 30.0%
GTGCATATTGATGTAAATAG+TGG - chr3.3:81811032-81811051 MS.gene38589:CDS 30.0%
GTTCTATCTCAAAATCCATT+TGG - chr3.3:81812838-81812857 MS.gene38589:CDS 30.0%
GTTTGTGTTTGTAAATTTGC+AGG - chr3.3:81813018-81813037 MS.gene38589:CDS 30.0%
TAATGGTAACAAATTTGAGG+AGG - chr3.3:81810704-81810723 MS.gene38589:CDS 30.0%
TCTTATTCCAACCAATTCTA+CGG - chr3.3:81812179-81812198 MS.gene38589:CDS 30.0%
TTTAATTGAATCTCACACCA+AGG - chr3.3:81812606-81812625 MS.gene38589:CDS 30.0%
! CATAGTATTGTATTTTGTGC+TGG - chr3.3:81811542-81811561 MS.gene38589:CDS 30.0%
! TGGCGTTTCTATTTTACAAT+TGG - chr3.3:81810823-81810842 MS.gene38589:CDS 30.0%
! TTAGCGATGAAACAATGTTT+TGG - chr3.3:81811351-81811370 MS.gene38589:CDS 30.0%
!! ATAAGGTTGATGATAAAGGA+AGG - chr3.3:81811378-81811397 MS.gene38589:CDS 30.0%
!! ATAGCCTTGTTTCAAAAAGA+TGG - chr3.3:81812419-81812438 MS.gene38589:CDS 30.0%
!!! AATGGATTTTGAGATAGAAC+CGG + chr3.3:81812838-81812857 None:intergenic 30.0%
AAACAGAACATACATACGTG+TGG - chr3.3:81811579-81811598 MS.gene38589:CDS 35.0%
AAAGAATTTACCACGGATGT+GGG + chr3.3:81811924-81811943 None:intergenic 35.0%
AACCGCAAAAACCAAACAAA+GGG - chr3.3:81812747-81812766 MS.gene38589:CDS 35.0%
AATGAGCATAGTTATGATCC+TGG - chr3.3:81810654-81810673 MS.gene38589:CDS 35.0%
AATGTCTTCCAAGCAATTCA+CGG + chr3.3:81810736-81810755 None:intergenic 35.0%
AATGTTGGATGACCAATTCA+AGG - chr3.3:81811097-81811116 MS.gene38589:CDS 35.0%
ACCTAATATTGCCTTTGTTG+AGG - chr3.3:81812669-81812688 MS.gene38589:CDS 35.0%
ACCTTTGTATGTTATAGGCA+AGG - chr3.3:81810921-81810940 MS.gene38589:CDS 35.0%
ACTCCAGAAAATACAACCAA+TGG + chr3.3:81811509-81811528 None:intergenic 35.0%
AGCAGACCTTTGTATGTTAT+AGG - chr3.3:81810916-81810935 MS.gene38589:CDS 35.0%
ATACAAAGGTCTGCTGAATT+AGG + chr3.3:81810911-81810930 None:intergenic 35.0%
ATACTTGTTCCTCTTGTATG+TGG + chr3.3:81811480-81811499 None:intergenic 35.0%
ATCCAGCAAAGAATTTACCA+CGG + chr3.3:81811931-81811950 None:intergenic 35.0%
ATGTGGTTGAACTATGTAAG+AGG - chr3.3:81812527-81812546 MS.gene38589:CDS 35.0%
ATGTTGGATGACCAATTCAA+GGG - chr3.3:81811098-81811117 MS.gene38589:CDS 35.0%
CACAAACTTGTGGTATATGT+AGG - chr3.3:81812785-81812804 MS.gene38589:CDS 35.0%
CCAAATAGGGTTAGAACTAA+AGG - chr3.3:81812706-81812725 MS.gene38589:CDS 35.0%
CCTTTGTATGTTATAGGCAA+GGG - chr3.3:81810922-81810941 MS.gene38589:CDS 35.0%
CGATATCGGAAATGTTGATA+TGG - chr3.3:81812921-81812940 MS.gene38589:intron 35.0%
CTCCAGAAAATACAACCAAT+GGG + chr3.3:81811508-81811527 None:intergenic 35.0%
GAACAACTATTGGAAGCAAT+GGG - chr3.3:81811608-81811627 MS.gene38589:CDS 35.0%
GAATCCAATGCCATTGATAA+TGG - chr3.3:81812871-81812890 MS.gene38589:CDS 35.0%
GATTCAGCTTGATTACCAAA+TGG + chr3.3:81812856-81812875 None:intergenic 35.0%
GTGGTTACTTGAACAACTAT+TGG - chr3.3:81811598-81811617 MS.gene38589:CDS 35.0%
TCCTCAACAAAGGCAATATT+AGG + chr3.3:81812673-81812692 None:intergenic 35.0%
TGAACAACTATTGGAAGCAA+TGG - chr3.3:81811607-81811626 MS.gene38589:CDS 35.0%
TGTGGTATATGTAGGATTGT+AGG - chr3.3:81812793-81812812 MS.gene38589:CDS 35.0%
TGTTTCAAATGATCCTACCA+TGG - chr3.3:81812489-81812508 MS.gene38589:CDS 35.0%
TTGGCAATGAGAAAAGCTAT+TGG - chr3.3:81811668-81811687 MS.gene38589:CDS 35.0%
! AATGTACTACGCAAAAGTGT+AGG + chr3.3:81812583-81812602 None:intergenic 35.0%
! AATTGGTATGCGAGTTTTCA+TGG - chr3.3:81810840-81810859 MS.gene38589:CDS 35.0%
! ATGTGTAAACTGACTTACCA+TGG + chr3.3:81812509-81812528 None:intergenic 35.0%
! ATTGGTATGCGAGTTTTCAT+GGG - chr3.3:81810841-81810860 MS.gene38589:CDS 35.0%
! GAAGGCTTTCACATTTGTTT+TGG - chr3.3:81811396-81811415 MS.gene38589:CDS 35.0%
! GGGATTAGTAAAGAGAAAAG+TGG - chr3.3:81810942-81810961 MS.gene38589:CDS 35.0%
! TCATTTTGTAGATGTTGGTG+TGG - chr3.3:81810803-81810822 MS.gene38589:CDS 35.0%
! TGGACTGGAAAATCACAAAT+GGG - chr3.3:81811859-81811878 MS.gene38589:CDS 35.0%
! TTGGACTGGAAAATCACAAA+TGG - chr3.3:81811858-81811877 MS.gene38589:CDS 35.0%
!! CATGCACTGTTATTGATTCT+AGG - chr3.3:81812212-81812231 MS.gene38589:CDS 35.0%
!! CCTTTAGTTCTAACCCTATT+TGG + chr3.3:81812709-81812728 None:intergenic 35.0%
!! GGAAAATCACAAATGGGTTA+AGG - chr3.3:81811865-81811884 MS.gene38589:CDS 35.0%
!! GGGAAATTTGTTATTGTCTG+AGG - chr3.3:81810626-81810645 MS.gene38589:CDS 35.0%
!! TCCTTACAACTTTGCTTTTG+CGG + chr3.3:81810875-81810894 None:intergenic 35.0%
!!! CTTTTTGAAACAAGGCTATC+CGG + chr3.3:81812418-81812437 None:intergenic 35.0%
!!! TCACATTTGTTTTGGTGTGA+CGG - chr3.3:81811404-81811423 MS.gene38589:CDS 35.0%
!!! TGGTCCATCTTTTTGAAACA+AGG + chr3.3:81812426-81812445 None:intergenic 35.0%
AAAACCAAACAAAGGGACCA+TGG - chr3.3:81812754-81812773 MS.gene38589:CDS 40.0%
AACTATTGGAAGCAATGGGT+GGG - chr3.3:81811612-81811631 MS.gene38589:CDS 40.0%
ACACTCTCAAGTATAGGCAA+AGG + chr3.3:81812127-81812146 None:intergenic 40.0%
AGACACTGCTGAATCCAAAT+AGG - chr3.3:81812692-81812711 MS.gene38589:CDS 40.0%
AGGGTTAGAACTAAAGGATG+TGG - chr3.3:81812712-81812731 MS.gene38589:CDS 40.0%
ATCCGTGGTAAATTCTTTGC+TGG - chr3.3:81811926-81811945 MS.gene38589:CDS 40.0%
ATTGATGAGAACGAGGAGTT+TGG - chr3.3:81812898-81812917 MS.gene38589:intron 40.0%
CAAAGAATTTACCACGGATG+TGG + chr3.3:81811925-81811944 None:intergenic 40.0%
CAACCGCAAAAACCAAACAA+AGG - chr3.3:81812746-81812765 MS.gene38589:CDS 40.0%
CCCTTGCCTATAACATACAA+AGG + chr3.3:81810925-81810944 None:intergenic 40.0%
CTTCACATCGAGAAGTTGTA+CGG + chr3.3:81811955-81811974 None:intergenic 40.0%
GAACAAGTATTTGTGCCCAT+TGG - chr3.3:81811490-81811509 MS.gene38589:CDS 40.0%
GACACTGCTGAATCCAAATA+GGG - chr3.3:81812693-81812712 MS.gene38589:CDS 40.0%
GATATGATGGTCACTGAGTT+TGG - chr3.3:81811839-81811858 MS.gene38589:CDS 40.0%
GCCATATTACATGTGCTCTT+GGG + chr3.3:81812276-81812295 None:intergenic 40.0%
GCTTTCAAGATATTCACACG+CGG + chr3.3:81811324-81811343 None:intergenic 40.0%
GGTAAGTCAGTTTACACATG+TGG - chr3.3:81812510-81812529 MS.gene38589:CDS 40.0%
GGTTGAACTATGTAAGAGGA+TGG - chr3.3:81812531-81812550 MS.gene38589:CDS 40.0%
GTACGATAAGCGTCATATGT+GGG - chr3.3:81811892-81811911 MS.gene38589:CDS 40.0%
GTGTCCATTATCAATGGCAT+TGG + chr3.3:81812878-81812897 None:intergenic 40.0%
TAAGCGTAAGTGGGATATGA+TGG - chr3.3:81811826-81811845 MS.gene38589:CDS 40.0%
TGCCATATTACATGTGCTCT+TGG + chr3.3:81812277-81812296 None:intergenic 40.0%
TGTACGATAAGCGTCATATG+TGG - chr3.3:81811891-81811910 MS.gene38589:CDS 40.0%
TTGATGTAAATAGTGGTCGG+TGG - chr3.3:81811039-81811058 MS.gene38589:CDS 40.0%
TTTACCATGGTCCCTTTGTT+TGG + chr3.3:81812761-81812780 None:intergenic 40.0%
TTTGAACATCGTAACCTTGC+CGG - chr3.3:81812396-81812415 MS.gene38589:CDS 40.0%
TTTGTCATCTTCCTATGTGC+CGG + chr3.3:81811131-81811150 None:intergenic 40.0%
! ACCCAAGAGCACATGTAATA+TGG - chr3.3:81812272-81812291 MS.gene38589:CDS 40.0%
! AGGGAAGTAGAAGCAGATTT+TGG - chr3.3:81812070-81812089 MS.gene38589:CDS 40.0%
! AGTCATAACTGATGGTGACT+TGG - chr3.3:81811649-81811668 MS.gene38589:CDS 40.0%
! CTTTTGATGCCACATACAAG+AGG - chr3.3:81811468-81811487 MS.gene38589:CDS 40.0%
! GGTTTGTTTGCTAATGAAGC+TGG - chr3.3:81811212-81811231 MS.gene38589:CDS 40.0%
! GTAAACTGACTTACCATGGT+AGG + chr3.3:81812505-81812524 None:intergenic 40.0%
! TCATAATCGCAAGTCTTGTC+CGG - chr3.3:81812816-81812835 MS.gene38589:CDS 40.0%
! TTGTTTGCTAATGAAGCTGG+TGG - chr3.3:81811215-81811234 MS.gene38589:CDS 40.0%
!! CGGCATAAGGTTGATGATAA+AGG - chr3.3:81811374-81811393 MS.gene38589:CDS 40.0%
!! GCGATGAAACAATGTTTTGG+CGG - chr3.3:81811354-81811373 MS.gene38589:CDS 40.0%
!! GCTGGTGGATTTCAAAAAGT+TGG - chr3.3:81811230-81811249 MS.gene38589:CDS 40.0%
!! GGCAAAGGTGTTTCTAAAAC+AGG + chr3.3:81812112-81812131 None:intergenic 40.0%
!! GGTTCTAGAAAATGCATGCA+AGG - chr3.3:81812627-81812646 MS.gene38589:CDS 40.0%
!! TGCCCATTGGTTGTATTTTC+TGG - chr3.3:81811503-81811522 MS.gene38589:CDS 40.0%
!!! AACAATGTTTTGGCGGCATA+AGG - chr3.3:81811361-81811380 MS.gene38589:CDS 40.0%
!!! GCAGATTTTGGTTCTAGTCA+TGG - chr3.3:81812082-81812101 MS.gene38589:CDS 40.0%
!!! GCATGCATTTTCTAGAACCT+TGG + chr3.3:81812626-81812645 None:intergenic 40.0%
!!! GTCCCTTTGTTTGGTTTTTG+CGG + chr3.3:81812752-81812771 None:intergenic 40.0%
!!! TGTTTGGTTTTTGCGGTTGA+CGG + chr3.3:81812745-81812764 None:intergenic 40.0%
AAACCTGTGGTGAATCGACT+GGG + chr3.3:81810518-81810537 None:intergenic 45.0%
AACGAGGAGTTTGGCGATAT+CGG - chr3.3:81812907-81812926 MS.gene38589:intron 45.0%
AAGATATTCACACGCGGCTT+TGG + chr3.3:81811318-81811337 None:intergenic 45.0%
AAGGCCTTCACGCACAATTT+GGG - chr3.3:81811972-81811991 MS.gene38589:CDS 45.0%
ACAACAGAAGAGGTTGCAGA+TGG - chr3.3:81810678-81810697 MS.gene38589:CDS 45.0%
ACAATCTGTGGTGACACTTG+GGG + chr3.3:81811703-81811722 None:intergenic 45.0%
ACACAATCTGTGGTGACACT+TGG + chr3.3:81811705-81811724 None:intergenic 45.0%
ATGAGCAACATGCGACAAGT+TGG - chr3.3:81811167-81811186 MS.gene38589:CDS 45.0%
ATGCTCTCCGTAGAATTGGT+TGG + chr3.3:81812189-81812208 None:intergenic 45.0%
ATGTTGGGTGACTACGATGT+TGG - chr3.3:81811797-81811816 MS.gene38589:CDS 45.0%
CAACTATTGGAAGCAATGGG+TGG - chr3.3:81811611-81811630 MS.gene38589:CDS 45.0%
CACAATCTGTGGTGACACTT+GGG + chr3.3:81811704-81811723 None:intergenic 45.0%
CACTTGAAGGTGAGACTAGT+TGG + chr3.3:81812313-81812332 None:intergenic 45.0%
CCAATTCAAGGGAATGCTTC+CGG - chr3.3:81811109-81811128 MS.gene38589:CDS 45.0%
CCAGCAACACTCTCAAGTAT+AGG + chr3.3:81812133-81812152 None:intergenic 45.0%
CCATCAGTTATGACTGACGT+AGG + chr3.3:81811644-81811663 None:intergenic 45.0%
CCTACGTCAGTCATAACTGA+TGG - chr3.3:81811641-81811660 MS.gene38589:CDS 45.0%
CGTACAACTTCTCGATGTGA+AGG - chr3.3:81811953-81811972 MS.gene38589:CDS 45.0%
GAACATGCTCTCCGTAGAAT+TGG + chr3.3:81812193-81812212 None:intergenic 45.0%
GAGGAGACAATACAAACCTG+TGG + chr3.3:81810531-81810550 None:intergenic 45.0%
GCCGCAAAAGCAAAGTTGTA+AGG - chr3.3:81810871-81810890 MS.gene38589:CDS 45.0%
TGATCCTGGAACAACAGAAG+AGG - chr3.3:81810668-81810687 MS.gene38589:CDS 45.0%
TGCTGGTGAGCTGTATACAA+GGG - chr3.3:81812147-81812166 MS.gene38589:CDS 45.0%
TGGACACATTGATGAGAACG+AGG - chr3.3:81812891-81812910 MS.gene38589:CDS 45.0%
TGGGGAGTTTAAGCGTAAGT+GGG - chr3.3:81811817-81811836 MS.gene38589:CDS 45.0%
TGTTGGGTGACTACGATGTT+GGG - chr3.3:81811798-81811817 MS.gene38589:CDS 45.0%
TTGCTGGTGAGCTGTATACA+AGG - chr3.3:81812146-81812165 MS.gene38589:CDS 45.0%
TTGGGGAGTTTAAGCGTAAG+TGG - chr3.3:81811816-81811835 MS.gene38589:CDS 45.0%
! TGAACACGTGATAGCCGTTT+TGG - chr3.3:81812369-81812388 MS.gene38589:CDS 45.0%
!! CCTATACTTGAGAGTGTTGC+TGG - chr3.3:81812130-81812149 MS.gene38589:CDS 45.0%
ACCTCCCAAATTGTGCGTGA+AGG + chr3.3:81811979-81811998 None:intergenic 50.0%
ACTATGTAAGAGGATGGCCG+TGG - chr3.3:81812537-81812556 MS.gene38589:CDS 50.0%
CAAACCTGTGGTGAATCGAC+TGG + chr3.3:81810519-81810538 None:intergenic 50.0%
CAGCAGTGTCTCCTCAACAA+AGG + chr3.3:81812683-81812702 None:intergenic 50.0%
CCTTCAAGTGCTCATGCGAA+AGG - chr3.3:81812323-81812342 MS.gene38589:CDS 50.0%
CCTTTCGCATGAGCACTTGA+AGG + chr3.3:81812326-81812345 None:intergenic 50.0%
GAAGGCCTTCACGCACAATT+TGG - chr3.3:81811971-81811990 MS.gene38589:CDS 50.0%
GAGGTTGCAGATGGCACTAA+TGG - chr3.3:81810687-81810706 MS.gene38589:CDS 50.0%
GATGCCATGCACACAATCTG+TGG + chr3.3:81811715-81811734 None:intergenic 50.0%
GATGGTCACTGAGTTTGGAC+TGG - chr3.3:81811844-81811863 MS.gene38589:CDS 50.0%
GCAACCTCTTCTGTTGTTCC+AGG + chr3.3:81810675-81810694 None:intergenic 50.0%
GTCACCACAGATTGTGTGCA+TGG - chr3.3:81811708-81811727 MS.gene38589:CDS 50.0%
GTTGGGTGACTACGATGTTG+GGG - chr3.3:81811799-81811818 MS.gene38589:CDS 50.0%
TGAAACAAGGCTATCCGGCA+AGG + chr3.3:81812413-81812432 None:intergenic 50.0%
TGCGAAAGGTTTGAGTCCCT+CGG - chr3.3:81812337-81812356 MS.gene38589:CDS 50.0%
! GAGCTCTTGGCACACGTTTT+CGG + chr3.3:81810980-81810999 None:intergenic 50.0%
! GCGAGTTTTCATGGGTTTGC+TGG - chr3.3:81810849-81810868 MS.gene38589:CDS 50.0%
!! ACACGTTTTCGGCTTGTGGA+TGG + chr3.3:81810969-81810988 None:intergenic 50.0%
!! CACGTTTTCGGCTTGTGGAT+GGG + chr3.3:81810968-81810987 None:intergenic 50.0%
!! CCGGAAGCATTCCCTTGAAT+TGG + chr3.3:81811112-81811131 None:intergenic 50.0%
AGGGAATGCTTCCGGCACAT+AGG - chr3.3:81811117-81811136 MS.gene38589:CDS 55.0%
GCCTTCACGCACAATTTGGG+AGG - chr3.3:81811975-81811994 MS.gene38589:CDS 55.0%
GGCAACTGCCGTGAATTGCT+TGG - chr3.3:81810725-81810744 MS.gene38589:CDS 55.0%
GTGTTCACATGCGATGCCGA+GGG + chr3.3:81812356-81812375 None:intergenic 55.0%
! TCACCCAGTCGATTCACCAC+AGG - chr3.3:81810512-81810531 MS.gene38589:intron 55.0%
!! TGGCACACGTTTTCGGCTTG+TGG + chr3.3:81810973-81810992 None:intergenic 55.0%
CCAAGAGCTCGTGTGAGGTG+CGG - chr3.3:81810990-81811009 MS.gene38589:CDS 60.0%
CCCACACTTCACAGCTGCCA+CGG + chr3.3:81812557-81812576 None:intergenic 60.0%
CCGTGGCAGCTGTGAAGTGT+GGG - chr3.3:81812554-81812573 MS.gene38589:CDS 60.0%
CGTGTTCACATGCGATGCCG+AGG + chr3.3:81812357-81812376 None:intergenic 60.0%
GTGTGCCAAGAGCTCGTGTG+AGG - chr3.3:81810985-81811004 MS.gene38589:CDS 60.0%
CCGCACCTCACACGAGCTCT+TGG + chr3.3:81810993-81811012 None:intergenic 65.0%
GCCGTGGCAGCTGTGAAGTG+TGG - chr3.3:81812553-81812572 MS.gene38589:CDS 65.0%
TGGGCTACTGCCCACATCCG+TGG - chr3.3:81811911-81811930 MS.gene38589:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 81810483 81813051 81810483 ID=MS.gene38589
chr3.3 mRNA 81810483 81813051 81810483 ID=MS.gene38589.t1;Parent=MS.gene38589
chr3.3 exon 81813001 81813051 81813001 ID=MS.gene38589.t1.exon1;Parent=MS.gene38589.t1
chr3.3 CDS 81813001 81813051 81813001 ID=cds.MS.gene38589.t1;Parent=MS.gene38589.t1
chr3.3 exon 81810592 81812913 81810592 ID=MS.gene38589.t1.exon2;Parent=MS.gene38589.t1
chr3.3 CDS 81810592 81812913 81810592 ID=cds.MS.gene38589.t1;Parent=MS.gene38589.t1
chr3.3 exon 81810483 81810494 81810483 ID=MS.gene38589.t1.exon3;Parent=MS.gene38589.t1
chr3.3 CDS 81810483 81810494 81810483 ID=cds.MS.gene38589.t1;Parent=MS.gene38589.t1
Gene Sequence

>MS.gene38589

ATGGAGGATGTTGATTCTGAATCTGTTACTCACCCAGTCGATTCACCACAGGTTTGTATTGTCTCCTCCTTATATTTGTTTTTTGTATGTTGTGATTAGTTGTTAAAAATATTAAAATTTCAATTGCTTATTATGTAGGATTTGGGAAATTTGTTATTGTCTGAGGATGAGAATGAGCATAGTTATGATCCTGGAACAACAGAAGAGGTTGCAGATGGCACTAATGGTAACAAATTTGAGGAGGCAACTGCCGTGAATTGCTTGGAAGACATTTCAAGTATCAATTTCGAAGAGTTGAGTATAGATGATTTATGGAGATATCATTTTGTAGATGTTGGTGTGGCGTTTCTATTTTACAATTGGTATGCGAGTTTTCATGGGTTTGCTGGCCGCAAAAGCAAAGTTGTAAGGAACAACAAAGGAGACCTAATTCAGCAGACCTTTGTATGTTATAGGCAAGGGATTAGTAAAGAGAAAAGTGGCCCATCCACAAGCCGAAAACGTGTGCCAAGAGCTCGTGTGAGGTGCGGTTGCGAAGCAAAGTGTCGCGTGCATATTGATGTAAATAGTGGTCGGTGGTACATGAAGTTTTTTGACGATGAACATAATCATTCAATGTTGGATGACCAATTCAAGGGAATGCTTCCGGCACATAGGAAGATGACAAATTATGATATTTGGCGAATGAGCAACATGCGACAAGTTGGTATCAAGACAAACCATATTTTTGGTTTGTTTGCTAATGAAGCTGGTGGATTTCAAAAAGTTGGTTTTCGGAAGCAAGATATGTACAATGAACAAGAGAGGCAGCGATTAACTTCTTCTAAAGATGCCAAAGCCGCGTGTGAATATCTTGAAAGCTTGTGCGTTAGCGATGAAACAATGTTTTGGCGGCATAAGGTTGATGATAAAGGAAGGCTTTCACATTTGTTTTGGTGTGACGGTGCTGCACAAAGAGATTATGAGATTTTTGGTGATGTAGTTGCTTTTGATGCCACATACAAGAGGAACAAGTATTTGTGCCCATTGGTTGTATTTTCTGGAGTGAATCACCATAATCATAGTATTGTATTTTGTGCTGGTATTGTTTGTGATGAAACAGAACATACATACGTGTGGTTACTTGAACAACTATTGGAAGCAATGGGTGGGAAAAGTCCTACGTCAGTCATAACTGATGGTGACTTGGCAATGAGAAAAGCTATTGGAAAAGTTTTCCCCAAGTGTCACCACAGATTGTGTGCATGGCATCTGCTACGTAACGCTTCGACCAATGTCAACAATAATCAATTTGTGCTAAAATTCAGAAATTGTATGTTGGGTGACTACGATGTTGGGGAGTTTAAGCGTAAGTGGGATATGATGGTCACTGAGTTTGGACTGGAAAATCACAAATGGGTTAAGGAAATGTACGATAAGCGTCATATGTGGGCTACTGCCCACATCCGTGGTAAATTCTTTGCTGGATTCCGTACAACTTCTCGATGTGAAGGCCTTCACGCACAATTTGGGAGGTATGTTAACTACCAAAACAATTTGCTTGATTTCTTGAAACAATATTTTAGATGTTTGAATTACATGAGATTTAGGGAAGTAGAAGCAGATTTTGGTTCTAGTCATGGTGAACCTGTTTTAGAAACACCTTTGCCTATACTTGAGAGTGTTGCTGGTGAGCTGTATACAAGGGAGATGTTTCTCTTATTCCAACCAATTCTACGGAGAGCATGTTCATGCACTGTTATTGATTCTAGGAAAACTTTAACTTGTTATGTTTATACGGTCAGTAGATACCCAAGAGCACATGTAATATGGCAAGTTTCATTTTCTCCAACTAGTCTCACCTTCAAGTGCTCATGCGAAAGGTTTGAGTCCCTCGGCATCGCATGTGAACACGTGATAGCCGTTTTGGTGTATTTGAACATCGTAACCTTGCCGGATAGCCTTGTTTCAAAAAGATGGACCAAAAATGCAAAAGATTCAATCACTGTTTGTACACCTAAAAATGATGTTTCAAATGATCCTACCATGGTAAGTCAGTTTACACATGTGGTTGAACTATGTAAGAGGATGGCCGTGGCAGCTGTGAAGTGTGGGAAGCCTACACTTTTGCGTAGTACATTTGATTTAATTGAATCTCACACCAAGGTTCTAGAAAATGCATGCAAGGACGTTGATTCATCATATGTACCTAATATTGCCTTTGTTGAGGAGACACTGCTGAATCCAAATAGGGTTAGAACTAAAGGATGTGGTGCAACACCGTCAACCGCAAAAACCAAACAAAGGGACCATGGTAAAAAAACACAAACTTGTGGTATATGTAGGATTGTAGGTCATAATCGCAAGTCTTGTCCGGTTCTATCTCAAAATCCATTTGGTAATCAAGCTGAATCCAATGCCATTGATAATGGACACATTGATGAGAACGAGGAGTTTGGCGATATCGGAAATGTTGATATGGTTAGTTCTTTTTCACAAACGTACAAGATATTTATGATGCATTATTTTGTAGTTGTTAAAAATGGTTGACACTCTGTTTGTGTTTGTAAATTTGCAGGGTATGTATTGA
Protein sequence

>MS.gene38589.t1

MEDVDSESVTHPVDSPQDLGNLLLSEDENEHSYDPGTTEEVADGTNGNKFEEATAVNCLEDISSINFEELSIDDLWRYHFVDVGVAFLFYNWYASFHGFAGRKSKVVRNNKGDLIQQTFVCYRQGISKEKSGPSTSRKRVPRARVRCGCEAKCRVHIDVNSGRWYMKFFDDEHNHSMLDDQFKGMLPAHRKMTNYDIWRMSNMRQVGIKTNHIFGLFANEAGGFQKVGFRKQDMYNEQERQRLTSSKDAKAACEYLESLCVSDETMFWRHKVDDKGRLSHLFWCDGAAQRDYEIFGDVVAFDATYKRNKYLCPLVVFSGVNHHNHSIVFCAGIVCDETEHTYVWLLEQLLEAMGGKSPTSVITDGDLAMRKAIGKVFPKCHHRLCAWHLLRNASTNVNNNQFVLKFRNCMLGDYDVGEFKRKWDMMVTEFGLENHKWVKEMYDKRHMWATAHIRGKFFAGFRTTSRCEGLHAQFGRYVNYQNNLLDFLKQYFRCLNYMRFREVEADFGSSHGEPVLETPLPILESVAGELYTREMFLLFQPILRRACSCTVIDSRKTLTCYVYTVSRYPRAHVIWQVSFSPTSLTFKCSCERFESLGIACEHVIAVLVYLNIVTLPDSLVSKRWTKNAKDSITVCTPKNDVSNDPTMVSQFTHVVELCKRMAVAAVKCGKPTLLRSTFDLIESHTKVLENACKDVDSSYVPNIAFVEETLLNPNRVRTKGCGATPSTAKTKQRDHGKKTQTCGICRIVGHNRKSCPVLSQNPFGNQAESNAIDNGHIDENEEFGDIGNVDMGMY