Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38594.t1 | XP_003602822.2 | 96.7 | 876 | 28 | 1 | 1 | 876 | 1 | 875 | 0.00E+00 | 1786.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38594.t1 | Q9M9E8 | 59.8 | 873 | 306 | 11 | 11 | 876 | 6 | 840 | 0.0e+00 | 1102.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38594.t1 | G7J3X8 | 96.7 | 876 | 28 | 1 | 1 | 876 | 1 | 875 | 0.0e+00 | 1786.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene38594.t1 | TR | Jumonji |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38594.t1 | MTR_3g099370 | 96.689 | 876 | 28 | 1 | 1 | 876 | 1 | 875 | 0.0 | 1750 |
| MS.gene38594.t1 | MTR_7g106990 | 38.904 | 365 | 210 | 8 | 11 | 372 | 87 | 441 | 1.56e-75 | 254 |
| MS.gene38594.t1 | MTR_3g077420 | 22.000 | 300 | 163 | 11 | 136 | 379 | 16 | 300 | 8.83e-11 | 64.7 |
| MS.gene38594.t1 | MTR_3g077420 | 22.000 | 300 | 163 | 11 | 136 | 379 | 16 | 300 | 9.90e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38594.t1 | AT1G78280 | 59.794 | 873 | 306 | 11 | 11 | 876 | 6 | 840 | 0.0 | 1065 |
| MS.gene38594.t1 | AT5G06550 | 37.875 | 367 | 215 | 8 | 12 | 376 | 73 | 428 | 1.06e-74 | 254 |
| MS.gene38594.t1 | AT5G63080 | 26.690 | 281 | 164 | 11 | 133 | 379 | 7 | 279 | 7.96e-19 | 90.9 |
Find 211 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTTCTTTGTTAAGATTC+TGG | 0.145954 | 3.3:-81776114 | None:intergenic |
| GCATGGAATACTCTTCTTTC+TGG | 0.157901 | 3.3:+81772090 | MS.gene38594:CDS |
| TGATTTCAGTGATCTTTCTA+TGG | 0.200906 | 3.3:+81776891 | MS.gene38594:CDS |
| GTCTACATCTTTCAGAGTTT+TGG | 0.213866 | 3.3:-81773842 | None:intergenic |
| GGACTGGAAGCATCGCTTTA+TGG | 0.213881 | 3.3:+81775347 | MS.gene38594:CDS |
| CATCCAGAAGCTATAATTTA+TGG | 0.214640 | 3.3:+81773896 | MS.gene38594:CDS |
| GATATAAATGAATTATTTAA+AGG | 0.220719 | 3.3:-81775996 | None:intergenic |
| CGAATTTGTATGTTTGGATA+TGG | 0.225637 | 3.3:+81773678 | MS.gene38594:CDS |
| CTCTTCTTTCTGGCCGTAAA+AGG | 0.234128 | 3.3:+81772100 | MS.gene38594:CDS |
| TCCTATAGGTGGCTTATAAT+TGG | 0.239011 | 3.3:+81772018 | MS.gene38594:CDS |
| CACCCTCAGGTCATGCTAAA+TGG | 0.250190 | 3.3:+81771587 | MS.gene38594:intron |
| CATATTAGATCTCTCATATC+TGG | 0.253644 | 3.3:-81774063 | None:intergenic |
| ACGTGGATGGTTTCCCGTTT+GGG | 0.269531 | 3.3:+81775629 | MS.gene38594:CDS |
| TTGGATACACACTGACATTA+TGG | 0.277456 | 3.3:+81776735 | MS.gene38594:CDS |
| AACATACTTGGCCTCCTTCC+TGG | 0.278108 | 3.3:+81775935 | MS.gene38594:CDS |
| TAACTTCGAATTTGTATGTT+TGG | 0.284606 | 3.3:+81773672 | MS.gene38594:CDS |
| TTGTTTGAGTATAGGAATAC+TGG | 0.294582 | 3.3:+81775667 | MS.gene38594:CDS |
| TCAATCAGTTTGCTAGGAAT+TGG | 0.295536 | 3.3:-81776525 | None:intergenic |
| TTTCCATAAATTATAGCTTC+TGG | 0.297974 | 3.3:-81773899 | None:intergenic |
| CAGATATGAGAGATCTAATA+TGG | 0.307979 | 3.3:+81774064 | MS.gene38594:CDS |
| TGGTTTCCCGTTTGGGGTAT+GGG | 0.311759 | 3.3:+81775636 | MS.gene38594:CDS |
| GACATAATCCTTGAACTTCA+TGG | 0.326012 | 3.3:-81771717 | None:intergenic |
| CTCGCGTCGCTTGCGTTAGC+AGG | 0.327432 | 3.3:+81769817 | MS.gene38594:CDS |
| CATCGCTTAATTATCAAATA+TGG | 0.329184 | 3.3:-81775739 | None:intergenic |
| ATGGTTTCCCGTTTGGGGTA+TGG | 0.336226 | 3.3:+81775635 | MS.gene38594:CDS |
| AACGTGGATGGTTTCCCGTT+TGG | 0.339996 | 3.3:+81775628 | MS.gene38594:CDS |
| CATCCATAGTGGTTCTTCAT+TGG | 0.346934 | 3.3:-81770450 | None:intergenic |
| TGGCACTCTTTGTACTTCTC+TGG | 0.357779 | 3.3:-81770653 | None:intergenic |
| ATCCCAACTTAAATTGGTAT+AGG | 0.361855 | 3.3:-81775551 | None:intergenic |
| GAGAATGGTTGTCCAAGCTT+TGG | 0.365534 | 3.3:+81774031 | MS.gene38594:CDS |
| GATCAGCTGTTACAAAACTA+TGG | 0.367650 | 3.3:+81771650 | MS.gene38594:CDS |
| GAAAGGCTTCCTGTTGGTTC+GGG | 0.369837 | 3.3:+81774274 | MS.gene38594:CDS |
| TTTCGTCGAAAATATATAAT+GGG | 0.370958 | 3.3:-81771769 | None:intergenic |
| CGAAAGGCTTCCTGTTGGTT+CGG | 0.372369 | 3.3:+81774273 | MS.gene38594:CDS |
| CATGGCCTGCCAGGCAGAAA+TGG | 0.378327 | 3.3:+81771621 | MS.gene38594:CDS |
| AATGTAAAGGCTGCTGTCTA+TGG | 0.380107 | 3.3:-81770673 | None:intergenic |
| ATCAAACAATGCAGCAGAAT+GGG | 0.387429 | 3.3:+81776082 | MS.gene38594:CDS |
| TAGCCGGTAACTCAAGTATA+TGG | 0.392078 | 3.3:+81775716 | MS.gene38594:CDS |
| TGGCCATATACTTGAGTTAC+CGG | 0.392860 | 3.3:-81775719 | None:intergenic |
| TGGATGACTCTATGCCTAAA+AGG | 0.397240 | 3.3:+81770467 | MS.gene38594:CDS |
| CCTCCTGGAAAAGTGCCTTT+AGG | 0.405897 | 3.3:+81773291 | MS.gene38594:CDS |
| TGCCTAAAAGGAGGAGCATC+TGG | 0.408109 | 3.3:+81770479 | MS.gene38594:CDS |
| GGGCAACAGCATTGGTCAAC+GGG | 0.409974 | 3.3:+81774002 | MS.gene38594:CDS |
| GGTAGTTGTGTACATTCAAT+TGG | 0.411189 | 3.3:-81773556 | None:intergenic |
| ACATACTTGGCCTCCTTCCT+GGG | 0.411835 | 3.3:+81775936 | MS.gene38594:CDS |
| GTATAGGAATACTGGGATTC+CGG | 0.412569 | 3.3:+81775675 | MS.gene38594:CDS |
| GTTGTCCATTTCTGCCTGGC+AGG | 0.425101 | 3.3:-81771626 | None:intergenic |
| GAAACATATTCCTAGTGTTA+TGG | 0.425446 | 3.3:+81775498 | MS.gene38594:CDS |
| CAGGCATTCTAACCACTTGC+CGG | 0.427854 | 3.3:-81774206 | None:intergenic |
| ATATTGAACGTGAATTAAAC+TGG | 0.429371 | 3.3:+81776021 | MS.gene38594:CDS |
| GGTGTTGAGATTGGACATAT+TGG | 0.431128 | 3.3:+81778131 | MS.gene38594:CDS |
| AATCCTATACCAATTTAAGT+TGG | 0.431151 | 3.3:+81775548 | MS.gene38594:CDS |
| TGGCGAATACATGGCCTGCC+AGG | 0.433299 | 3.3:+81771612 | MS.gene38594:CDS |
| GATTTCAGTGATCTTTCTAT+GGG | 0.433748 | 3.3:+81776892 | MS.gene38594:CDS |
| ACGTGCCCCTAGCTTATTGA+AGG | 0.437387 | 3.3:+81771930 | MS.gene38594:CDS |
| GCAAGCAATTGTTTGAGTAT+AGG | 0.439732 | 3.3:+81775659 | MS.gene38594:CDS |
| ATCCTATACCAATTTAAGTT+GGG | 0.441548 | 3.3:+81775549 | MS.gene38594:CDS |
| ATCAGTTGTCCATTTCTGCC+TGG | 0.443048 | 3.3:-81771630 | None:intergenic |
| GAAGCATCGCTTTATGGTTT+AGG | 0.443732 | 3.3:+81775353 | MS.gene38594:CDS |
| CACAGAGATCTGGTGCCTCT+TGG | 0.445712 | 3.3:+81772043 | MS.gene38594:CDS |
| AAAGATCTCCATGAAGTTCA+AGG | 0.447205 | 3.3:+81771709 | MS.gene38594:CDS |
| TGCTTGCCCCATACCCCAAA+CGG | 0.447802 | 3.3:-81775643 | None:intergenic |
| TGTAAATAGGTTTATCTAGT+GGG | 0.450022 | 3.3:+81775293 | MS.gene38594:intron |
| GCACCTGGTTATCGTCATAA+AGG | 0.453039 | 3.3:+81773700 | MS.gene38594:CDS |
| TTCTTCAATACAAAGGCTCT+TGG | 0.456556 | 3.3:+81770504 | MS.gene38594:CDS |
| TATCCAATGAAGAACCACTA+TGG | 0.457458 | 3.3:+81770447 | MS.gene38594:CDS |
| CTGAAATCAAGGAGGTAACT+AGG | 0.465174 | 3.3:-81776877 | None:intergenic |
| GCACTTCTAAACCCTGCTCT+TGG | 0.465947 | 3.3:+81776716 | MS.gene38594:CDS |
| TTCCATGCACTTGTAAGAGC+TGG | 0.466147 | 3.3:-81772075 | None:intergenic |
| TTCCTAGTGTTATGGCCAGT+GGG | 0.468965 | 3.3:+81775506 | MS.gene38594:CDS |
| TAGAAAGATCACTGAAATCA+AGG | 0.469489 | 3.3:-81776888 | None:intergenic |
| GTCAGTGTGTATCCAAGAGC+AGG | 0.469541 | 3.3:-81776728 | None:intergenic |
| AAGTATACCACTTGGTCAAA+CGG | 0.469956 | 3.3:-81776151 | None:intergenic |
| CAGATAAACGACCATCCTAT+AGG | 0.470762 | 3.3:+81772004 | MS.gene38594:CDS |
| CCTTTCGTCATCTGTGGGAG+GGG | 0.475975 | 3.3:-81774257 | None:intergenic |
| TTGAAGCCAACTCCCCTCTC+AGG | 0.479773 | 3.3:+81775476 | MS.gene38594:CDS |
| TCTAGAACCTGCAGTGATGA+TGG | 0.481252 | 3.3:-81773363 | None:intergenic |
| TCCAATTATAAGCCACCTAT+AGG | 0.486415 | 3.3:-81772019 | None:intergenic |
| ATAATTGGACCACAGAGATC+TGG | 0.489173 | 3.3:+81772033 | MS.gene38594:CDS |
| GCCTTTCGTCATCTGTGGGA+GGG | 0.490405 | 3.3:-81774258 | None:intergenic |
| TGTGGAGAGTTGAGGAACTC+TGG | 0.494165 | 3.3:+81778156 | MS.gene38594:CDS |
| GTGGGGAATGGTGTTGAGAT+TGG | 0.496345 | 3.3:+81778122 | MS.gene38594:intron |
| GAATTATTTAAAGGTGGATG+TGG | 0.496530 | 3.3:-81775987 | None:intergenic |
| AATCAAACAATGCAGCAGAA+TGG | 0.499094 | 3.3:+81776081 | MS.gene38594:CDS |
| CAATTTATGTTCCGAGTGGA+TGG | 0.499365 | 3.3:+81773587 | MS.gene38594:CDS |
| GGTTTCCCGTTTGGGGTATG+GGG | 0.499368 | 3.3:+81775637 | MS.gene38594:CDS |
| ACATGCACCGTCACACCTAA+AGG | 0.501322 | 3.3:-81773306 | None:intergenic |
| AGGTGGGCATTATATCCTCC+TGG | 0.509762 | 3.3:+81773276 | MS.gene38594:intron |
| GCTTGCCCCATACCCCAAAC+GGG | 0.510621 | 3.3:-81775642 | None:intergenic |
| ATGTTTCCTGAGAGGGGAGT+TGG | 0.512138 | 3.3:-81775482 | None:intergenic |
| TGGAGCTCGGGCAACAGCAT+TGG | 0.513686 | 3.3:+81773994 | MS.gene38594:CDS |
| TATACCAATTTAAGTTGGGA+TGG | 0.514509 | 3.3:+81775553 | MS.gene38594:CDS |
| TAAATGGACTGGCGAATACA+TGG | 0.516680 | 3.3:+81771603 | MS.gene38594:CDS |
| ATTGAGCAGAGGATTTCATC+GGG | 0.517061 | 3.3:-81769765 | None:intergenic |
| AATTTAAGTTGGGATGGAAA+AGG | 0.517463 | 3.3:+81775559 | MS.gene38594:CDS |
| CAGTAATCCTTCAATAAGCT+AGG | 0.518812 | 3.3:-81771937 | None:intergenic |
| AATTGAGCAGAGGATTTCAT+CGG | 0.521661 | 3.3:-81769766 | None:intergenic |
| AATAAATGACATCTCAATGA+AGG | 0.522634 | 3.3:+81770912 | MS.gene38594:CDS |
| CAAGTATGACATGAAGAAAC+CGG | 0.525208 | 3.3:+81770945 | MS.gene38594:CDS |
| TAAGTTACTCTGATTTGTCA+AGG | 0.527231 | 3.3:+81773806 | MS.gene38594:CDS |
| TTGATAATTAAGCGATGTGA+GGG | 0.528989 | 3.3:+81775745 | MS.gene38594:CDS |
| TAGGAATATGTTTCCTGAGA+GGG | 0.530545 | 3.3:-81775489 | None:intergenic |
| CGGGCAACAGCATTGGTCAA+CGG | 0.534919 | 3.3:+81774001 | MS.gene38594:CDS |
| AGGCATAGAGTCATCCATAG+TGG | 0.536115 | 3.3:-81770461 | None:intergenic |
| ATAAATGAATTATTTAAAGG+TGG | 0.536575 | 3.3:-81775993 | None:intergenic |
| TATGGATGATAATATTTACA+TGG | 0.536763 | 3.3:+81776753 | MS.gene38594:CDS |
| ATTGCTCTTCAAAATGACAC+TGG | 0.537117 | 3.3:-81775587 | None:intergenic |
| AGTAATCCTTCAATAAGCTA+GGG | 0.541163 | 3.3:-81771936 | None:intergenic |
| TGTTTGAGTATAGGAATACT+GGG | 0.542687 | 3.3:+81775668 | MS.gene38594:CDS |
| CAAGGATTATGTCTCATACA+TGG | 0.543266 | 3.3:+81771727 | MS.gene38594:CDS |
| GCATGCATTGCACTAAATGC+CGG | 0.547137 | 3.3:+81774187 | MS.gene38594:CDS |
| CTGTAAATAGGTTTATCTAG+TGG | 0.547357 | 3.3:+81775292 | MS.gene38594:intron |
| TAAGCTGCTAAATATAAATG+AGG | 0.548356 | 3.3:+81776581 | MS.gene38594:CDS |
| GGAACATAAATTGTCTCTCC+AGG | 0.550858 | 3.3:-81773577 | None:intergenic |
| AGGAAGCCTTTCGTCATCTG+TGG | 0.551264 | 3.3:-81774263 | None:intergenic |
| AAACTAACTGATCCGTCCGC+CGG | 0.551543 | 3.3:-81775694 | None:intergenic |
| GATCGCAGAATAGACGCTCT+TGG | 0.552054 | 3.3:+81769726 | MS.gene38594:CDS |
| ATCCAGCTCTTACAAGTGCA+TGG | 0.557351 | 3.3:+81772073 | MS.gene38594:CDS |
| ACCACGTTGGAGTGAAATCC+TGG | 0.558962 | 3.3:+81776851 | MS.gene38594:CDS |
| GACGGATCAGTTAGTTTAGC+CGG | 0.560179 | 3.3:+81775700 | MS.gene38594:CDS |
| GTGGGAAGATACAACATACT+TGG | 0.560604 | 3.3:+81775923 | MS.gene38594:CDS |
| GCGACGCGAGCAGCATCTTG+AGG | 0.560780 | 3.3:-81769804 | None:intergenic |
| GGATTGCTACCCGAACCAAC+AGG | 0.563415 | 3.3:-81774283 | None:intergenic |
| GAGGTAGAGCAAATCGATGA+TGG | 0.564450 | 3.3:-81776778 | None:intergenic |
| TTGCATTTAAAATTTCTCAA+AGG | 0.564534 | 3.3:+81771678 | MS.gene38594:CDS |
| CGTGGATGGTTTCCCGTTTG+GGG | 0.564553 | 3.3:+81775630 | MS.gene38594:CDS |
| TTGTTACCATCAAAATGTAA+AGG | 0.567945 | 3.3:-81770686 | None:intergenic |
| AGAAGCTATAATTTATGGAA+AGG | 0.568532 | 3.3:+81773901 | MS.gene38594:CDS |
| TGAGACTCCATCATCACTGC+AGG | 0.568853 | 3.3:+81773356 | MS.gene38594:CDS |
| CATAAAGGAGTCTGCCGTGT+GGG | 0.569358 | 3.3:+81773715 | MS.gene38594:CDS |
| CCAGAATCTTAACAAAGAAG+AGG | 0.570253 | 3.3:+81776114 | MS.gene38594:CDS |
| AGCCTTTCGTCATCTGTGGG+AGG | 0.570411 | 3.3:-81774259 | None:intergenic |
| AAACGGGAACTAGTGGGGAA+TGG | 0.574590 | 3.3:+81778110 | MS.gene38594:intron |
| ACCCCACTGGCCATAACACT+AGG | 0.575861 | 3.3:-81775508 | None:intergenic |
| TCAGGTCATGCTAAATGGAC+TGG | 0.577021 | 3.3:+81771592 | MS.gene38594:intron |
| AGCATCTTCTGTATTCCCAC+TGG | 0.577196 | 3.3:-81776800 | None:intergenic |
| AGCTATAATTTATGGAAAGG+TGG | 0.579530 | 3.3:+81773904 | MS.gene38594:CDS |
| ATTCCTAGTGTTATGGCCAG+TGG | 0.580711 | 3.3:+81775505 | MS.gene38594:CDS |
| TCTCAAGCCGTTTGACCAAG+TGG | 0.584548 | 3.3:+81776144 | MS.gene38594:CDS |
| CTTTCGTCATCTGTGGGAGG+GGG | 0.587951 | 3.3:-81774256 | None:intergenic |
| TCCTAGTGTTATGGCCAGTG+GGG | 0.588471 | 3.3:+81775507 | MS.gene38594:CDS |
| AATACTGGGATTCCGGCGGA+CGG | 0.589838 | 3.3:+81775682 | MS.gene38594:CDS |
| GTCAACGGGAACTAAGAGAA+TGG | 0.591171 | 3.3:+81774016 | MS.gene38594:CDS |
| AGCAGCTTAGATAAATCAGA+TGG | 0.592390 | 3.3:-81776567 | None:intergenic |
| TTTGATAATTAAGCGATGTG+AGG | 0.594501 | 3.3:+81775744 | MS.gene38594:CDS |
| TCGATTTGCTCTACCTCCAG+TGG | 0.595230 | 3.3:+81776784 | MS.gene38594:CDS |
| TTAAACTGGTCTGAGGTGAA+TGG | 0.595295 | 3.3:+81776035 | MS.gene38594:CDS |
| ACAGAGAAATGCAACGTGGA+TGG | 0.595885 | 3.3:+81775616 | MS.gene38594:CDS |
| TATTGGACTGTGGAGAGTTG+AGG | 0.598470 | 3.3:+81778148 | MS.gene38594:CDS |
| GTAAATAGGTTTATCTAGTG+GGG | 0.600129 | 3.3:+81775294 | MS.gene38594:intron |
| ATCTTCTGTATTCCCACTGG+AGG | 0.600340 | 3.3:-81776797 | None:intergenic |
| TATGAGAGATCTAATATGGA+AGG | 0.601472 | 3.3:+81774068 | MS.gene38594:CDS |
| TGACTTCAGAATTTCTCAAG+TGG | 0.604991 | 3.3:+81776694 | MS.gene38594:intron |
| AATCTTAACAAAGAAGAGGA+AGG | 0.605956 | 3.3:+81776118 | MS.gene38594:CDS |
| AATACAGAAGATGCTGCCGA+GGG | 0.606356 | 3.3:+81776808 | MS.gene38594:CDS |
| GTATGTTTGGATATGGCACC+TGG | 0.607998 | 3.3:+81773685 | MS.gene38594:CDS |
| ATTATAAGCCACCTATAGGA+TGG | 0.608178 | 3.3:-81772015 | None:intergenic |
| CCCCTCCCACAGATGACGAA+AGG | 0.610507 | 3.3:+81774257 | MS.gene38594:CDS |
| TTGCACTAAATGCCGGCAAG+TGG | 0.611811 | 3.3:+81774194 | MS.gene38594:CDS |
| GTGCATGTTAATGAAGAAGA+TGG | 0.611852 | 3.3:+81773321 | MS.gene38594:CDS |
| AGCTCCACTCAAAATTGTAG+TGG | 0.612842 | 3.3:-81773978 | None:intergenic |
| GGAAGCCTTTCGTCATCTGT+GGG | 0.613871 | 3.3:-81774262 | None:intergenic |
| CAGAAGAGACAGACTATCGT+GGG | 0.616345 | 3.3:+81775905 | MS.gene38594:intron |
| TGTTTAGAAAGAGAAATAAG+TGG | 0.619138 | 3.3:+81773871 | MS.gene38594:CDS |
| TTGCTCTTCAAAATGACACT+GGG | 0.620536 | 3.3:-81775586 | None:intergenic |
| GAATACAGAAGATGCTGCCG+AGG | 0.621862 | 3.3:+81776807 | MS.gene38594:CDS |
| TACAGAAGATGCTGCCGAGG+GGG | 0.626315 | 3.3:+81776810 | MS.gene38594:CDS |
| TTGTCTTCGTCAGCAAGAAG+AGG | 0.627512 | 3.3:-81773532 | None:intergenic |
| AGGAATATGTTTCCTGAGAG+GGG | 0.628568 | 3.3:-81775488 | None:intergenic |
| GTGGATGTGGTAAAAGATGA+AGG | 0.628693 | 3.3:-81775974 | None:intergenic |
| CGATTTGCTCTACCTCCAGT+GGG | 0.629855 | 3.3:+81776785 | MS.gene38594:CDS |
| CAGATGAAACGTAAATCTTG+AGG | 0.630314 | 3.3:-81778185 | None:intergenic |
| CATACTTGGCCTCCTTCCTG+GGG | 0.630626 | 3.3:+81775937 | MS.gene38594:CDS |
| ATACAGTGCCACCATCCACT+CGG | 0.631096 | 3.3:-81773598 | None:intergenic |
| TCAAACAATGCAGCAGAATG+GGG | 0.631106 | 3.3:+81776083 | MS.gene38594:CDS |
| GACGTTCGAGAATTGAGCAG+AGG | 0.634922 | 3.3:-81769776 | None:intergenic |
| GATGACGAAAGGCTTCCTGT+TGG | 0.636057 | 3.3:+81774268 | MS.gene38594:CDS |
| TTTATGTTCCGAGTGGATGG+TGG | 0.637501 | 3.3:+81773590 | MS.gene38594:CDS |
| TTCAAGATAAACAACCCCAC+TGG | 0.638268 | 3.3:-81775521 | None:intergenic |
| ATTGAATGTACACAACTACC+TGG | 0.639305 | 3.3:+81773559 | MS.gene38594:CDS |
| GCAGAAGAGACAGACTATCG+TGG | 0.640708 | 3.3:+81775904 | MS.gene38594:intron |
| CTAGGAATATGTTTCCTGAG+AGG | 0.644586 | 3.3:-81775490 | None:intergenic |
| ACTCCTTTATGACGATAACC+AGG | 0.653563 | 3.3:-81773703 | None:intergenic |
| CAAGAGCAAGCAAACCCACA+CGG | 0.656542 | 3.3:-81773729 | None:intergenic |
| GAGACAATTTATGTTCCGAG+TGG | 0.659270 | 3.3:+81773583 | MS.gene38594:CDS |
| ATACTTGGCCTCCTTCCTGG+GGG | 0.660706 | 3.3:+81775938 | MS.gene38594:CDS |
| TCAGTGTGTATCCAAGAGCA+GGG | 0.663517 | 3.3:-81776727 | None:intergenic |
| AAGGAGGTAACTAGGACACC+AGG | 0.663763 | 3.3:-81776869 | None:intergenic |
| AAAAGTGCCTTTAGGTGTGA+CGG | 0.668167 | 3.3:+81773299 | MS.gene38594:CDS |
| GGTTTATTGAGTGACCACGT+TGG | 0.675486 | 3.3:+81776838 | MS.gene38594:CDS |
| AGCTGGATCAACATGCCAAG+AGG | 0.677057 | 3.3:-81772058 | None:intergenic |
| TGTATAAAATGTATCCAGTG+TGG | 0.684015 | 3.3:-81770869 | None:intergenic |
| TATCCAGTGTGGTATGACAC+CGG | 0.684470 | 3.3:-81770858 | None:intergenic |
| ATAAACGACCATCCTATAGG+TGG | 0.685021 | 3.3:+81772007 | MS.gene38594:CDS |
| TGATAATTAAGCGATGTGAG+GGG | 0.689937 | 3.3:+81775746 | MS.gene38594:CDS |
| ATGACTCTATGCCTAAAAGG+AGG | 0.692833 | 3.3:+81770470 | MS.gene38594:CDS |
| TTATACAGAGGGTGGCAATG+TGG | 0.697663 | 3.3:+81770885 | MS.gene38594:CDS |
| TCATAAAGGAGTCTGCCGTG+TGG | 0.699636 | 3.3:+81773714 | MS.gene38594:CDS |
| AGATTGGACATATTGGACTG+TGG | 0.706385 | 3.3:+81778138 | MS.gene38594:CDS |
| ATACCGGTGTCATACCACAC+TGG | 0.707579 | 3.3:+81770855 | MS.gene38594:CDS |
| CTGTATCTAAGATATCGAAG+AGG | 0.711016 | 3.3:-81771984 | None:intergenic |
| TAGGAATACTGGGATTCCGG+CGG | 0.711408 | 3.3:+81775678 | MS.gene38594:CDS |
| ACGTGAATTAAACTGGTCTG+AGG | 0.711510 | 3.3:+81776028 | MS.gene38594:CDS |
| GCTTTATGGTTTAGGCACAG+AGG | 0.719101 | 3.3:+81775361 | MS.gene38594:CDS |
| GTAATCCTTCAATAAGCTAG+GGG | 0.720242 | 3.3:-81771935 | None:intergenic |
| ATACAGAAGATGCTGCCGAG+GGG | 0.739771 | 3.3:+81776809 | MS.gene38594:CDS |
| CAAGAGGCACCAGATCTCTG+TGG | 0.740954 | 3.3:-81772042 | None:intergenic |
| CATCACAGAGAAATGCAACG+TGG | 0.742244 | 3.3:+81775612 | MS.gene38594:CDS |
| AAAGATCACTGAAATCAAGG+AGG | 0.742693 | 3.3:-81776885 | None:intergenic |
| ACCAGGATTTCACTCCAACG+TGG | 0.759662 | 3.3:-81776852 | None:intergenic |
| GATGTGGTAAAAGATGAAGG+TGG | 0.808325 | 3.3:-81775971 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 81769690 | 81778232 | 81769690 | ID=MS.gene38594 |
| chr3.3 | mRNA | 81769690 | 81778232 | 81769690 | ID=MS.gene38594.t1;Parent=MS.gene38594 |
| chr3.3 | exon | 81769690 | 81769838 | 81769690 | ID=MS.gene38594.t1.exon1;Parent=MS.gene38594.t1 |
| chr3.3 | CDS | 81769690 | 81769838 | 81769690 | ID=cds.MS.gene38594.t1;Parent=MS.gene38594.t1 |
| chr3.3 | exon | 81770433 | 81770546 | 81770433 | ID=MS.gene38594.t1.exon2;Parent=MS.gene38594.t1 |
| chr3.3 | CDS | 81770433 | 81770546 | 81770433 | ID=cds.MS.gene38594.t1;Parent=MS.gene38594.t1 |
| chr3.3 | exon | 81770643 | 81770701 | 81770643 | ID=MS.gene38594.t1.exon3;Parent=MS.gene38594.t1 |
| chr3.3 | CDS | 81770643 | 81770701 | 81770643 | ID=cds.MS.gene38594.t1;Parent=MS.gene38594.t1 |
| chr3.3 | exon | 81770824 | 81770966 | 81770824 | ID=MS.gene38594.t1.exon4;Parent=MS.gene38594.t1 |
| chr3.3 | CDS | 81770824 | 81770966 | 81770824 | ID=cds.MS.gene38594.t1;Parent=MS.gene38594.t1 |
| chr3.3 | exon | 81771596 | 81771793 | 81771596 | ID=MS.gene38594.t1.exon5;Parent=MS.gene38594.t1 |
| chr3.3 | CDS | 81771596 | 81771793 | 81771596 | ID=cds.MS.gene38594.t1;Parent=MS.gene38594.t1 |
| chr3.3 | exon | 81771922 | 81772121 | 81771922 | ID=MS.gene38594.t1.exon6;Parent=MS.gene38594.t1 |
| chr3.3 | CDS | 81771922 | 81772121 | 81771922 | ID=cds.MS.gene38594.t1;Parent=MS.gene38594.t1 |
| chr3.3 | exon | 81773278 | 81773377 | 81773278 | ID=MS.gene38594.t1.exon7;Parent=MS.gene38594.t1 |
| chr3.3 | CDS | 81773278 | 81773377 | 81773278 | ID=cds.MS.gene38594.t1;Parent=MS.gene38594.t1 |
| chr3.3 | exon | 81773514 | 81774089 | 81773514 | ID=MS.gene38594.t1.exon8;Parent=MS.gene38594.t1 |
| chr3.3 | CDS | 81773514 | 81774089 | 81773514 | ID=cds.MS.gene38594.t1;Parent=MS.gene38594.t1 |
| chr3.3 | exon | 81774184 | 81774306 | 81774184 | ID=MS.gene38594.t1.exon9;Parent=MS.gene38594.t1 |
| chr3.3 | CDS | 81774184 | 81774306 | 81774184 | ID=cds.MS.gene38594.t1;Parent=MS.gene38594.t1 |
| chr3.3 | exon | 81775302 | 81775382 | 81775302 | ID=MS.gene38594.t1.exon10;Parent=MS.gene38594.t1 |
| chr3.3 | CDS | 81775302 | 81775382 | 81775302 | ID=cds.MS.gene38594.t1;Parent=MS.gene38594.t1 |
| chr3.3 | exon | 81775454 | 81775785 | 81775454 | ID=MS.gene38594.t1.exon11;Parent=MS.gene38594.t1 |
| chr3.3 | CDS | 81775454 | 81775785 | 81775454 | ID=cds.MS.gene38594.t1;Parent=MS.gene38594.t1 |
| chr3.3 | exon | 81775908 | 81776165 | 81775908 | ID=MS.gene38594.t1.exon12;Parent=MS.gene38594.t1 |
| chr3.3 | CDS | 81775908 | 81776165 | 81775908 | ID=cds.MS.gene38594.t1;Parent=MS.gene38594.t1 |
| chr3.3 | exon | 81776518 | 81776602 | 81776518 | ID=MS.gene38594.t1.exon13;Parent=MS.gene38594.t1 |
| chr3.3 | CDS | 81776518 | 81776602 | 81776518 | ID=cds.MS.gene38594.t1;Parent=MS.gene38594.t1 |
| chr3.3 | exon | 81776703 | 81776913 | 81776703 | ID=MS.gene38594.t1.exon14;Parent=MS.gene38594.t1 |
| chr3.3 | CDS | 81776703 | 81776913 | 81776703 | ID=cds.MS.gene38594.t1;Parent=MS.gene38594.t1 |
| chr3.3 | exon | 81778123 | 81778232 | 81778123 | ID=MS.gene38594.t1.exon15;Parent=MS.gene38594.t1 |
| chr3.3 | CDS | 81778123 | 81778232 | 81778123 | ID=cds.MS.gene38594.t1;Parent=MS.gene38594.t1 |
| Gene Sequence |
| Protein sequence |
