Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38595.t1 | XP_003602822.2 | 88.9 | 932 | 48 | 7 | 1 | 878 | 1 | 931 | 0.00E+00 | 1694.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38595.t1 | Q9M9E8 | 57.1 | 906 | 312 | 15 | 11 | 868 | 6 | 882 | 2.1e-304 | 1046.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38595.t1 | G7J3X8 | 88.9 | 932 | 48 | 7 | 1 | 878 | 1 | 931 | 0.0e+00 | 1694.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene38595.t1 | TR | Jumonji |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38595.t1 | MTR_3g099370 | 88.948 | 932 | 48 | 7 | 1 | 878 | 1 | 931 | 0.0 | 1657 |
| MS.gene38595.t1 | MTR_7g106990 | 38.904 | 365 | 210 | 8 | 11 | 372 | 87 | 441 | 1.71e-75 | 253 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38595.t1 | AT1G78280 | 57.174 | 906 | 311 | 16 | 11 | 868 | 6 | 882 | 0.0 | 1005 |
| MS.gene38595.t1 | AT5G06550 | 37.875 | 367 | 215 | 8 | 12 | 376 | 73 | 428 | 9.15e-75 | 253 |
| MS.gene38595.t1 | AT5G63080 | 26.690 | 281 | 164 | 11 | 133 | 379 | 7 | 279 | 8.82e-19 | 90.9 |
Find 199 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTTCTTTGTTAAGATTC+TGG | 0.145954 | 3.3:-81761183 | None:intergenic |
| GCATGGAATACTCTTCTTTC+TGG | 0.157901 | 3.3:+81757155 | MS.gene38595:CDS |
| TGACTTGATACCAATTTATT+TGG | 0.164384 | 3.3:+81763611 | MS.gene38595:CDS |
| TGATTTCAGTGATCTTTCTA+TGG | 0.200906 | 3.3:+81761959 | MS.gene38595:CDS |
| GGACTGGAAGCATCGCTTTA+TGG | 0.213881 | 3.3:+81760414 | MS.gene38595:CDS |
| AGATATAAATGAATTATTTA+AGG | 0.214502 | 3.3:-81761066 | None:intergenic |
| CATCCAGAAGCTATAATTTA+TGG | 0.214640 | 3.3:+81758960 | MS.gene38595:CDS |
| CGAATTTGTATGTTTGGATA+TGG | 0.225637 | 3.3:+81758743 | MS.gene38595:CDS |
| CTCTTCTTTCTGGCCGTAAA+AGG | 0.234128 | 3.3:+81757165 | MS.gene38595:CDS |
| TCCTATAGGTGGCTTATAAT+TGG | 0.239011 | 3.3:+81757083 | MS.gene38595:CDS |
| CACCCTCAGGTCATGCTAAA+TGG | 0.250190 | 3.3:+81756652 | MS.gene38595:intron |
| CATATTAGATCTCTCATATC+TGG | 0.253644 | 3.3:-81759127 | None:intergenic |
| ACGTGGATGGTTTCCCGTTT+GGG | 0.269531 | 3.3:+81760697 | MS.gene38595:CDS |
| AACATACTTGGCCTCCTTCC+TGG | 0.278108 | 3.3:+81761004 | MS.gene38595:CDS |
| CTAAACACATCCAAATAAAT+TGG | 0.279520 | 3.3:-81763621 | None:intergenic |
| TAACTTCGAATTTGTATGTT+TGG | 0.284606 | 3.3:+81758737 | MS.gene38595:CDS |
| TTTGATATGTTGCCAGAAAA+AGG | 0.286273 | 3.3:-81763690 | None:intergenic |
| ATCGGCTTAATTATCAAATA+TGG | 0.293964 | 3.3:-81760807 | None:intergenic |
| TTGTTTGAGTATAGGAATAC+TGG | 0.294582 | 3.3:+81760735 | MS.gene38595:CDS |
| TCAATCAGTTTGCTAGGAAT+TGG | 0.295536 | 3.3:-81761594 | None:intergenic |
| TTTCCATAAATTATAGCTTC+TGG | 0.297974 | 3.3:-81758963 | None:intergenic |
| CAGATATGAGAGATCTAATA+TGG | 0.307979 | 3.3:+81759128 | MS.gene38595:CDS |
| TGGTTTCCCGTTTGGGGTAT+GGG | 0.311759 | 3.3:+81760704 | MS.gene38595:CDS |
| GACATAATCCTTGAACTTCA+TGG | 0.326012 | 3.3:-81756782 | None:intergenic |
| CTCGCGTCGCTTGCGTTAGC+AGG | 0.327432 | 3.3:+81754882 | MS.gene38595:CDS |
| ATGGTTTCCCGTTTGGGGTA+TGG | 0.336226 | 3.3:+81760703 | MS.gene38595:CDS |
| AACGTGGATGGTTTCCCGTT+TGG | 0.339996 | 3.3:+81760696 | MS.gene38595:CDS |
| CATCCATAGTGGTTCTTCAT+TGG | 0.346934 | 3.3:-81755515 | None:intergenic |
| TGGCACTCTTTGTACTTCTC+TGG | 0.357779 | 3.3:-81755718 | None:intergenic |
| ATCCCAACTTAAATTGGTAT+AGG | 0.361855 | 3.3:-81760619 | None:intergenic |
| GAGAATGGTTGTCCAAGCTT+TGG | 0.365534 | 3.3:+81759095 | MS.gene38595:CDS |
| GATCAGCTGTTACAAAACTA+TGG | 0.367650 | 3.3:+81756715 | MS.gene38595:CDS |
| GAAAGGCTTCCTGTTGGTTC+GGG | 0.369837 | 3.3:+81759338 | MS.gene38595:CDS |
| TTTCGTCGAAAATATATAAT+GGG | 0.370958 | 3.3:-81756834 | None:intergenic |
| CGAAAGGCTTCCTGTTGGTT+CGG | 0.372369 | 3.3:+81759337 | MS.gene38595:CDS |
| CATGGCCTGCCAGGCAGAAA+TGG | 0.378327 | 3.3:+81756686 | MS.gene38595:CDS |
| AATGTAAAGGCTGCTGTCTA+TGG | 0.380107 | 3.3:-81755738 | None:intergenic |
| ATTTATTTGGATGTGTTTAG+AGG | 0.384148 | 3.3:+81763624 | MS.gene38595:CDS |
| ATCAAACAATGCAGCAGAAT+GGG | 0.387429 | 3.3:+81761151 | MS.gene38595:CDS |
| TAGCCGGTAACTCAAGTATA+TGG | 0.392078 | 3.3:+81760784 | MS.gene38595:CDS |
| TGGCCATATACTTGAGTTAC+CGG | 0.392860 | 3.3:-81760787 | None:intergenic |
| TGGATGACTCTATGCCTAAA+AGG | 0.397240 | 3.3:+81755532 | MS.gene38595:CDS |
| CCTCCTGGAAAAGTGCCTTT+AGG | 0.405897 | 3.3:+81758355 | MS.gene38595:CDS |
| TGCCTAAAAGGAGGAGCATC+TGG | 0.408109 | 3.3:+81755544 | MS.gene38595:CDS |
| GGGCAACAGCATTGGTCAAC+GGG | 0.409974 | 3.3:+81759066 | MS.gene38595:CDS |
| GGTAGTTGTGTACATTCAAT+TGG | 0.411189 | 3.3:-81758621 | None:intergenic |
| ACATACTTGGCCTCCTTCCT+GGG | 0.411835 | 3.3:+81761005 | MS.gene38595:CDS |
| GTATAGGAATACTGGGATTC+CGG | 0.412569 | 3.3:+81760743 | MS.gene38595:CDS |
| GTTGTCCATTTCTGCCTGGC+AGG | 0.425101 | 3.3:-81756691 | None:intergenic |
| GAAACATATTCCTAGTGTTA+TGG | 0.425446 | 3.3:+81760566 | MS.gene38595:CDS |
| CAGGCATTCTAACCACTTGC+CGG | 0.427854 | 3.3:-81759270 | None:intergenic |
| ATATTGAACGTGAATTAAAC+TGG | 0.429371 | 3.3:+81761090 | MS.gene38595:CDS |
| AATCCTATACCAATTTAAGT+TGG | 0.431151 | 3.3:+81760616 | MS.gene38595:CDS |
| TGGCGAATACATGGCCTGCC+AGG | 0.433299 | 3.3:+81756677 | MS.gene38595:CDS |
| GATTTCAGTGATCTTTCTAT+GGG | 0.433748 | 3.3:+81761960 | MS.gene38595:CDS |
| ACGTGCCCCTAGCTTATTGA+AGG | 0.437387 | 3.3:+81756995 | MS.gene38595:CDS |
| ACAGAGGGTGGTCTAAAGTT+TGG | 0.438033 | 3.3:+81763723 | MS.gene38595:CDS |
| GCAAGCAATTGTTTGAGTAT+AGG | 0.439732 | 3.3:+81760727 | MS.gene38595:CDS |
| ATCCTATACCAATTTAAGTT+GGG | 0.441548 | 3.3:+81760617 | MS.gene38595:CDS |
| ATCAGTTGTCCATTTCTGCC+TGG | 0.443048 | 3.3:-81756695 | None:intergenic |
| GAAGCATCGCTTTATGGTTT+AGG | 0.443732 | 3.3:+81760420 | MS.gene38595:CDS |
| CACAGAGATCTGGTGCCTCT+TGG | 0.445712 | 3.3:+81757108 | MS.gene38595:CDS |
| AAAGATCTCCATGAAGTTCA+AGG | 0.447205 | 3.3:+81756774 | MS.gene38595:CDS |
| TGCTTGCCCCATACCCCAAA+CGG | 0.447802 | 3.3:-81760711 | None:intergenic |
| TGTAAATAGGTTTATCTAGT+GGG | 0.450022 | 3.3:+81760360 | MS.gene38595:intron |
| GCACCTGGTTATCGTCATAA+AGG | 0.453039 | 3.3:+81758765 | MS.gene38595:CDS |
| TTCTTCAATACAAAGGCTCT+TGG | 0.456556 | 3.3:+81755569 | MS.gene38595:CDS |
| TATCCAATGAAGAACCACTA+TGG | 0.457458 | 3.3:+81755512 | MS.gene38595:CDS |
| CTGAAATCAAGGAGGTAACT+AGG | 0.465174 | 3.3:-81761945 | None:intergenic |
| TTCCATGCACTTGTAAGAGC+TGG | 0.466147 | 3.3:-81757140 | None:intergenic |
| TTCCTAGTGTTATGGCCAGT+GGG | 0.468965 | 3.3:+81760574 | MS.gene38595:CDS |
| TAGAAAGATCACTGAAATCA+AGG | 0.469489 | 3.3:-81761956 | None:intergenic |
| AAGTATACCACTTGGTCAAA+CGG | 0.469956 | 3.3:-81761220 | None:intergenic |
| CAGATAAACGACCATCCTAT+AGG | 0.470762 | 3.3:+81757069 | MS.gene38595:CDS |
| TGAATTATTTAAGGTGGATG+TGG | 0.474068 | 3.3:-81761057 | None:intergenic |
| CCTTTCGTCATCTGTGGGAG+GGG | 0.475975 | 3.3:-81759321 | None:intergenic |
| TTGAAGCCAACTCCCCTCTC+AGG | 0.479773 | 3.3:+81760544 | MS.gene38595:CDS |
| TCTAGAACCTGCAGTGATGA+TGG | 0.481252 | 3.3:-81758427 | None:intergenic |
| TCCAATTATAAGCCACCTAT+AGG | 0.486415 | 3.3:-81757084 | None:intergenic |
| ATAATTGGACCACAGAGATC+TGG | 0.489173 | 3.3:+81757098 | MS.gene38595:CDS |
| GCCTTTCGTCATCTGTGGGA+GGG | 0.490405 | 3.3:-81759322 | None:intergenic |
| AATCAAACAATGCAGCAGAA+TGG | 0.499094 | 3.3:+81761150 | MS.gene38595:CDS |
| CAATTTATGTTCCGAGTGGA+TGG | 0.499365 | 3.3:+81758652 | MS.gene38595:CDS |
| GGTTTCCCGTTTGGGGTATG+GGG | 0.499368 | 3.3:+81760705 | MS.gene38595:CDS |
| ACATGCACCGTCACACCTAA+AGG | 0.501322 | 3.3:-81758370 | None:intergenic |
| TATAAATGAATTATTTAAGG+TGG | 0.501569 | 3.3:-81761063 | None:intergenic |
| AGGTGGGCATTATATCCTCC+TGG | 0.509762 | 3.3:+81758340 | MS.gene38595:intron |
| GCTTGCCCCATACCCCAAAC+GGG | 0.510621 | 3.3:-81760710 | None:intergenic |
| ATGTTTCCTGAGAGGGGAGT+TGG | 0.512138 | 3.3:-81760550 | None:intergenic |
| TGGAGCTCGGGCAACAGCAT+TGG | 0.513686 | 3.3:+81759058 | MS.gene38595:CDS |
| TATACCAATTTAAGTTGGGA+TGG | 0.514509 | 3.3:+81760621 | MS.gene38595:CDS |
| TAAATGGACTGGCGAATACA+TGG | 0.516680 | 3.3:+81756668 | MS.gene38595:CDS |
| ATTGAGCAGAGGATTTCATC+GGG | 0.517061 | 3.3:-81754830 | None:intergenic |
| AATTTAAGTTGGGATGGAAA+AGG | 0.517463 | 3.3:+81760627 | MS.gene38595:CDS |
| CAGTAATCCTTCAATAAGCT+AGG | 0.518812 | 3.3:-81757002 | None:intergenic |
| AATTGAGCAGAGGATTTCAT+CGG | 0.521661 | 3.3:-81754831 | None:intergenic |
| AATAAATGACATCTCAATGA+AGG | 0.522634 | 3.3:+81755977 | MS.gene38595:CDS |
| CAAGTATGACATGAAGAAAC+CGG | 0.525208 | 3.3:+81756010 | MS.gene38595:CDS |
| TAGGAATATGTTTCCTGAGA+GGG | 0.530545 | 3.3:-81760557 | None:intergenic |
| CGGGCAACAGCATTGGTCAA+CGG | 0.534919 | 3.3:+81759065 | MS.gene38595:CDS |
| AGGCATAGAGTCATCCATAG+TGG | 0.536115 | 3.3:-81755526 | None:intergenic |
| ATTGCTCTTCAAAATGACAC+TGG | 0.537117 | 3.3:-81760655 | None:intergenic |
| AGTAATCCTTCAATAAGCTA+GGG | 0.541163 | 3.3:-81757001 | None:intergenic |
| TGTTTGAGTATAGGAATACT+GGG | 0.542687 | 3.3:+81760736 | MS.gene38595:CDS |
| CAAGGATTATGTCTCATACA+TGG | 0.543266 | 3.3:+81756792 | MS.gene38595:CDS |
| GCATGCATTGCACTAAATGC+CGG | 0.547137 | 3.3:+81759251 | MS.gene38595:CDS |
| CTGTAAATAGGTTTATCTAG+TGG | 0.547357 | 3.3:+81760359 | MS.gene38595:intron |
| TAAGCTGCTAAATATAAATG+AGG | 0.548356 | 3.3:+81761650 | MS.gene38595:CDS |
| GGAACATAAATTGTCTCTCC+AGG | 0.550858 | 3.3:-81758642 | None:intergenic |
| AGGAAGCCTTTCGTCATCTG+TGG | 0.551264 | 3.3:-81759327 | None:intergenic |
| AATACAGAAGATGCTGCCGA+GGG | 0.551410 | 3.3:+81761874 | MS.gene38595:CDS |
| AAACTAACTGATCCGTCCGC+CGG | 0.551543 | 3.3:-81760762 | None:intergenic |
| GATCGCAGAATAGACGCTCT+TGG | 0.552054 | 3.3:+81754791 | MS.gene38595:CDS |
| ATCCAGCTCTTACAAGTGCA+TGG | 0.557351 | 3.3:+81757138 | MS.gene38595:CDS |
| GAGGGGAGTTGGCTTCAAGC+AGG | 0.557686 | 3.3:-81760539 | None:intergenic |
| ACCACGTTGGAGTGAAATCC+TGG | 0.558962 | 3.3:+81761919 | MS.gene38595:CDS |
| GACGGATCAGTTAGTTTAGC+CGG | 0.560179 | 3.3:+81760768 | MS.gene38595:CDS |
| GTGGGAAGATACAACATACT+TGG | 0.560604 | 3.3:+81760992 | MS.gene38595:CDS |
| GCGACGCGAGCAGCATCTTG+AGG | 0.560780 | 3.3:-81754869 | None:intergenic |
| GGATTGCTACCCGAACCAAC+AGG | 0.563415 | 3.3:-81759347 | None:intergenic |
| TTGCATTTAAAATTTCTCAA+AGG | 0.564534 | 3.3:+81756743 | MS.gene38595:CDS |
| CGTGGATGGTTTCCCGTTTG+GGG | 0.564553 | 3.3:+81760698 | MS.gene38595:CDS |
| TTGTTACCATCAAAATGTAA+AGG | 0.567945 | 3.3:-81755751 | None:intergenic |
| AGAAGCTATAATTTATGGAA+AGG | 0.568532 | 3.3:+81758965 | MS.gene38595:CDS |
| TGAGACTCCATCATCACTGC+AGG | 0.568853 | 3.3:+81758420 | MS.gene38595:CDS |
| CATAAAGGAGTCTGCCGTGT+GGG | 0.569358 | 3.3:+81758780 | MS.gene38595:CDS |
| CCAGAATCTTAACAAAGAAG+AGG | 0.570253 | 3.3:+81761183 | MS.gene38595:CDS |
| AGCCTTTCGTCATCTGTGGG+AGG | 0.570411 | 3.3:-81759323 | None:intergenic |
| TACAGAAGATGCTGCCGAGG+GGG | 0.574759 | 3.3:+81761876 | MS.gene38595:CDS |
| ACCCCACTGGCCATAACACT+AGG | 0.575861 | 3.3:-81760576 | None:intergenic |
| TCAGGTCATGCTAAATGGAC+TGG | 0.577021 | 3.3:+81756657 | MS.gene38595:intron |
| AGCTATAATTTATGGAAAGG+TGG | 0.579530 | 3.3:+81758968 | MS.gene38595:CDS |
| ATTCCTAGTGTTATGGCCAG+TGG | 0.580711 | 3.3:+81760573 | MS.gene38595:CDS |
| ATCAAAGTACGAGTCAACAG+AGG | 0.583079 | 3.3:+81763707 | MS.gene38595:CDS |
| TCTCAAGCCGTTTGACCAAG+TGG | 0.584548 | 3.3:+81761213 | MS.gene38595:CDS |
| CTTTCGTCATCTGTGGGAGG+GGG | 0.587951 | 3.3:-81759320 | None:intergenic |
| TCCTAGTGTTATGGCCAGTG+GGG | 0.588471 | 3.3:+81760575 | MS.gene38595:CDS |
| AATACTGGGATTCCGGCGGA+CGG | 0.589838 | 3.3:+81760750 | MS.gene38595:CDS |
| ACAGAAGATGCTGCCGAGGG+GGG | 0.590682 | 3.3:+81761877 | MS.gene38595:CDS |
| GTCAACGGGAACTAAGAGAA+TGG | 0.591171 | 3.3:+81759080 | MS.gene38595:CDS |
| AGCAGCTTAGATAAATCAGA+TGG | 0.592390 | 3.3:-81761636 | None:intergenic |
| TTAAACTGGTCTGAGGTGAA+TGG | 0.595295 | 3.3:+81761104 | MS.gene38595:CDS |
| ACAGAGAAATGCAACGTGGA+TGG | 0.595885 | 3.3:+81760684 | MS.gene38595:CDS |
| GTAAATAGGTTTATCTAGTG+GGG | 0.600129 | 3.3:+81760361 | MS.gene38595:intron |
| TATGAGAGATCTAATATGGA+AGG | 0.601472 | 3.3:+81759132 | MS.gene38595:CDS |
| AATCTTAACAAAGAAGAGGA+AGG | 0.605956 | 3.3:+81761187 | MS.gene38595:CDS |
| GTATGTTTGGATATGGCACC+TGG | 0.607998 | 3.3:+81758750 | MS.gene38595:CDS |
| ATTATAAGCCACCTATAGGA+TGG | 0.608178 | 3.3:-81757080 | None:intergenic |
| CCCCTCCCACAGATGACGAA+AGG | 0.610507 | 3.3:+81759321 | MS.gene38595:CDS |
| GTGGATGTGGTAAAAGATGA+AGG | 0.611300 | 3.3:-81761044 | None:intergenic |
| TTGCACTAAATGCCGGCAAG+TGG | 0.611811 | 3.3:+81759258 | MS.gene38595:CDS |
| GTGCATGTTAATGAAGAAGA+TGG | 0.611852 | 3.3:+81758385 | MS.gene38595:CDS |
| AGCTCCACTCAAAATTGTAG+TGG | 0.612842 | 3.3:-81759042 | None:intergenic |
| GGAAGCCTTTCGTCATCTGT+GGG | 0.613871 | 3.3:-81759326 | None:intergenic |
| CAGAAGAGACAGACTATCGT+GGG | 0.616345 | 3.3:+81760974 | MS.gene38595:intron |
| TGTTTAGAAAGAGAAATAAG+TGG | 0.619138 | 3.3:+81758935 | MS.gene38595:CDS |
| TTGCTCTTCAAAATGACACT+GGG | 0.620536 | 3.3:-81760654 | None:intergenic |
| GAATACAGAAGATGCTGCCG+AGG | 0.621862 | 3.3:+81761873 | MS.gene38595:CDS |
| CAGAAGATGCTGCCGAGGGG+GGG | 0.626315 | 3.3:+81761878 | MS.gene38595:CDS |
| TTGTCTTCGTCAGCAAGAAG+AGG | 0.627512 | 3.3:-81758597 | None:intergenic |
| AGGAATATGTTTCCTGAGAG+GGG | 0.628568 | 3.3:-81760556 | None:intergenic |
| CATACTTGGCCTCCTTCCTG+GGG | 0.630626 | 3.3:+81761006 | MS.gene38595:CDS |
| ATACAGTGCCACCATCCACT+CGG | 0.631096 | 3.3:-81758663 | None:intergenic |
| TCAAACAATGCAGCAGAATG+GGG | 0.631106 | 3.3:+81761152 | MS.gene38595:CDS |
| GACGTTCGAGAATTGAGCAG+AGG | 0.634922 | 3.3:-81754841 | None:intergenic |
| GATGACGAAAGGCTTCCTGT+TGG | 0.636057 | 3.3:+81759332 | MS.gene38595:CDS |
| TTTATGTTCCGAGTGGATGG+TGG | 0.637501 | 3.3:+81758655 | MS.gene38595:CDS |
| TTCAAGATAAACAACCCCAC+TGG | 0.638268 | 3.3:-81760589 | None:intergenic |
| ATTGAATGTACACAACTACC+TGG | 0.639305 | 3.3:+81758624 | MS.gene38595:CDS |
| GCAGAAGAGACAGACTATCG+TGG | 0.640708 | 3.3:+81760973 | MS.gene38595:intron |
| CTAGGAATATGTTTCCTGAG+AGG | 0.644586 | 3.3:-81760558 | None:intergenic |
| ACTCCTTTATGACGATAACC+AGG | 0.653563 | 3.3:-81758768 | None:intergenic |
| CAAGAGCAAGCAAACCCACA+CGG | 0.656542 | 3.3:-81758794 | None:intergenic |
| GAGACAATTTATGTTCCGAG+TGG | 0.659270 | 3.3:+81758648 | MS.gene38595:CDS |
| TCAAAGTACGAGTCAACAGA+GGG | 0.660427 | 3.3:+81763708 | MS.gene38595:CDS |
| ATACTTGGCCTCCTTCCTGG+GGG | 0.660706 | 3.3:+81761007 | MS.gene38595:CDS |
| AAGGAGGTAACTAGGACACC+AGG | 0.663763 | 3.3:-81761937 | None:intergenic |
| AAAAGTGCCTTTAGGTGTGA+CGG | 0.668167 | 3.3:+81758363 | MS.gene38595:CDS |
| GGTTTATTGAGTGACCACGT+TGG | 0.675486 | 3.3:+81761906 | MS.gene38595:CDS |
| AGCTGGATCAACATGCCAAG+AGG | 0.677057 | 3.3:-81757123 | None:intergenic |
| TGTATAAAATGTATCCAGTG+TGG | 0.684015 | 3.3:-81755934 | None:intergenic |
| TATCCAGTGTGGTATGACAC+CGG | 0.684470 | 3.3:-81755923 | None:intergenic |
| ATAAACGACCATCCTATAGG+TGG | 0.685021 | 3.3:+81757072 | MS.gene38595:CDS |
| AAGTACGAGTCAACAGAGGG+TGG | 0.691127 | 3.3:+81763711 | MS.gene38595:CDS |
| ATGACTCTATGCCTAAAAGG+AGG | 0.692833 | 3.3:+81755535 | MS.gene38595:CDS |
| TTATACAGAGGGTGGCAATG+TGG | 0.697663 | 3.3:+81755950 | MS.gene38595:CDS |
| TCATAAAGGAGTCTGCCGTG+TGG | 0.699636 | 3.3:+81758779 | MS.gene38595:CDS |
| ATACAGAAGATGCTGCCGAG+GGG | 0.699785 | 3.3:+81761875 | MS.gene38595:CDS |
| ATACCGGTGTCATACCACAC+TGG | 0.707579 | 3.3:+81755920 | MS.gene38595:CDS |
| CTGTATCTAAGATATCGAAG+AGG | 0.711016 | 3.3:-81757049 | None:intergenic |
| TAGGAATACTGGGATTCCGG+CGG | 0.711408 | 3.3:+81760746 | MS.gene38595:CDS |
| ACGTGAATTAAACTGGTCTG+AGG | 0.711510 | 3.3:+81761097 | MS.gene38595:CDS |
| GCTTTATGGTTTAGGCACAG+AGG | 0.719101 | 3.3:+81760428 | MS.gene38595:CDS |
| GTAATCCTTCAATAAGCTAG+GGG | 0.720242 | 3.3:-81757000 | None:intergenic |
| CAAGAGGCACCAGATCTCTG+TGG | 0.740954 | 3.3:-81757107 | None:intergenic |
| CATCACAGAGAAATGCAACG+TGG | 0.742244 | 3.3:+81760680 | MS.gene38595:CDS |
| AAAGATCACTGAAATCAAGG+AGG | 0.742693 | 3.3:-81761953 | None:intergenic |
| ACCAGGATTTCACTCCAACG+TGG | 0.759662 | 3.3:-81761920 | None:intergenic |
| GATGTGGTAAAAGATGAAGG+TGG | 0.808325 | 3.3:-81761041 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 81754755 | 81763766 | 81754755 | ID=MS.gene38595 |
| chr3.3 | mRNA | 81754755 | 81763766 | 81754755 | ID=MS.gene38595.t1;Parent=MS.gene38595 |
| chr3.3 | exon | 81754755 | 81754903 | 81754755 | ID=MS.gene38595.t1.exon1;Parent=MS.gene38595.t1 |
| chr3.3 | CDS | 81754755 | 81754903 | 81754755 | ID=cds.MS.gene38595.t1;Parent=MS.gene38595.t1 |
| chr3.3 | exon | 81755498 | 81755611 | 81755498 | ID=MS.gene38595.t1.exon2;Parent=MS.gene38595.t1 |
| chr3.3 | CDS | 81755498 | 81755611 | 81755498 | ID=cds.MS.gene38595.t1;Parent=MS.gene38595.t1 |
| chr3.3 | exon | 81755708 | 81755766 | 81755708 | ID=MS.gene38595.t1.exon3;Parent=MS.gene38595.t1 |
| chr3.3 | CDS | 81755708 | 81755766 | 81755708 | ID=cds.MS.gene38595.t1;Parent=MS.gene38595.t1 |
| chr3.3 | exon | 81755889 | 81756031 | 81755889 | ID=MS.gene38595.t1.exon4;Parent=MS.gene38595.t1 |
| chr3.3 | CDS | 81755889 | 81756031 | 81755889 | ID=cds.MS.gene38595.t1;Parent=MS.gene38595.t1 |
| chr3.3 | exon | 81756661 | 81756858 | 81756661 | ID=MS.gene38595.t1.exon5;Parent=MS.gene38595.t1 |
| chr3.3 | CDS | 81756661 | 81756858 | 81756661 | ID=cds.MS.gene38595.t1;Parent=MS.gene38595.t1 |
| chr3.3 | exon | 81756987 | 81757186 | 81756987 | ID=MS.gene38595.t1.exon6;Parent=MS.gene38595.t1 |
| chr3.3 | CDS | 81756987 | 81757186 | 81756987 | ID=cds.MS.gene38595.t1;Parent=MS.gene38595.t1 |
| chr3.3 | exon | 81758342 | 81758441 | 81758342 | ID=MS.gene38595.t1.exon7;Parent=MS.gene38595.t1 |
| chr3.3 | CDS | 81758342 | 81758441 | 81758342 | ID=cds.MS.gene38595.t1;Parent=MS.gene38595.t1 |
| chr3.3 | exon | 81758579 | 81758885 | 81758579 | ID=MS.gene38595.t1.exon8;Parent=MS.gene38595.t1 |
| chr3.3 | CDS | 81758579 | 81758885 | 81758579 | ID=cds.MS.gene38595.t1;Parent=MS.gene38595.t1 |
| chr3.3 | exon | 81758921 | 81759153 | 81758921 | ID=MS.gene38595.t1.exon9;Parent=MS.gene38595.t1 |
| chr3.3 | CDS | 81758921 | 81759153 | 81758921 | ID=cds.MS.gene38595.t1;Parent=MS.gene38595.t1 |
| chr3.3 | exon | 81759248 | 81759370 | 81759248 | ID=MS.gene38595.t1.exon10;Parent=MS.gene38595.t1 |
| chr3.3 | CDS | 81759248 | 81759370 | 81759248 | ID=cds.MS.gene38595.t1;Parent=MS.gene38595.t1 |
| chr3.3 | exon | 81760369 | 81760449 | 81760369 | ID=MS.gene38595.t1.exon11;Parent=MS.gene38595.t1 |
| chr3.3 | CDS | 81760369 | 81760449 | 81760369 | ID=cds.MS.gene38595.t1;Parent=MS.gene38595.t1 |
| chr3.3 | exon | 81760525 | 81760829 | 81760525 | ID=MS.gene38595.t1.exon12;Parent=MS.gene38595.t1 |
| chr3.3 | CDS | 81760525 | 81760829 | 81760525 | ID=cds.MS.gene38595.t1;Parent=MS.gene38595.t1 |
| chr3.3 | exon | 81760977 | 81761234 | 81760977 | ID=MS.gene38595.t1.exon13;Parent=MS.gene38595.t1 |
| chr3.3 | CDS | 81760977 | 81761234 | 81760977 | ID=cds.MS.gene38595.t1;Parent=MS.gene38595.t1 |
| chr3.3 | exon | 81761587 | 81761671 | 81761587 | ID=MS.gene38595.t1.exon14;Parent=MS.gene38595.t1 |
| chr3.3 | CDS | 81761587 | 81761671 | 81761587 | ID=cds.MS.gene38595.t1;Parent=MS.gene38595.t1 |
| chr3.3 | exon | 81761870 | 81761981 | 81761870 | ID=MS.gene38595.t1.exon15;Parent=MS.gene38595.t1 |
| chr3.3 | CDS | 81761870 | 81761981 | 81761870 | ID=cds.MS.gene38595.t1;Parent=MS.gene38595.t1 |
| chr3.3 | exon | 81763598 | 81763766 | 81763598 | ID=MS.gene38595.t1.exon16;Parent=MS.gene38595.t1 |
| chr3.3 | CDS | 81763598 | 81763766 | 81763598 | ID=cds.MS.gene38595.t1;Parent=MS.gene38595.t1 |
| Gene Sequence |
| Protein sequence |
