AlfalfaGEDB | MS.gene38681

M. sativa cultivar XinJiangDaYe / MS.gene38681

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008037 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022414 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048544 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00954.23 PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38681.t1	RHN70324.1	85.3	729	45	3	1	729	23	689	0.00E+00	1249.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38681.t1	P17801	37.4	791	402	16	4	714	35	812	8.9e-144	512.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38681.t1	A0A396J0V6	85.3	729	45	3	1	729	23	689	0.0e+00	1249.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene38681.t1	MTR_3g031640	54.124	776	285	10	6	715	24	794	813
MS.gene38681.t1	MTR_3g031490	54.616	769	284	14	6	714	24	787	812
MS.gene38681.t1	MTR_3g031480	54.359	780	281	14	6	716	27	800	807
MS.gene38681.t1	MTR_3g031600	54.581	775	282	10	6	715	24	793	806
MS.gene38681.t1	MTR_7g058550	54.282	759	288	12	9	715	36	787	803
MS.gene38681.t1	MTR_3g031610	54.134	774	284	11	6	715	24	790	800
MS.gene38681.t1	MTR_7g058830	52.979	772	301	14	1	716	27	792	794
MS.gene38681.t1	MTR_4g094858	53.696	771	295	15	1	715	26	790	791
MS.gene38681.t1	MTR_7g058530	53.080	763	303	10	3	715	31	788	790
MS.gene38681.t1	MTR_3g031470	53.729	791	286	13	6	723	26	809	782

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38681.t1	AT2G19130	33.202	762	427	24	16	721	38	773	1.73e-119	378
MS.gene38681.t1	AT5G24080	34.043	799	421	30	4	720	33	807	1.50e-110	355
MS.gene38681.t1	AT4G00340	31.167	754	439	23	16	715	33	760	1.37e-100	328
MS.gene38681.t1	AT1G34300	32.322	758	413	26	18	717	44	759	2.22e-100	328
MS.gene38681.t1	AT5G24080	34.101	695	360	26	106	720	4	680	1.87e-95	312
MS.gene38681.t1	AT5G24080	34.101	695	360	26	106	720	4	680	1.87e-95	312
MS.gene38681.t1	AT4G32300	32.219	748	429	23	18	717	50	767	9.63e-95	312
MS.gene38681.t1	AT1G65790	29.502	783	455	27	6	714	35	794	9.16e-83	280
MS.gene38681.t1	AT1G11300	29.326	757	441	26	14	714	40	758	1.95e-82	279
MS.gene38681.t1	AT1G11340	29.858	777	446	28	14	714	32	785	4.54e-82	278

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Find 139 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTTGACATAGCTTT+AGG	0.272851	3.3:-84671200	MS.gene38681:CDS
AAACAGTTCATACACTTACA+AGG	0.591768	3.3:-84671774	MS.gene38681:CDS
AAACCAAAATCTGAAACCTT+TGG	0.409351	3.3:+84671077	None:intergenic
AAACTTCACCTTCTCAAACA+TGG	0.598829	3.3:-84672751	MS.gene38681:CDS
AAAGACATAAAAGAATTTCA+TGG	0.343294	3.3:-84670827	MS.gene38681:CDS
AAAGCCGGCAGTGGTATACC+TGG	0.606618	3.3:-84671884	MS.gene38681:CDS
AAAGTTGATGTTTATAGCTA+TGG	0.413462	3.3:-84670945	MS.gene38681:CDS
AAATGAAGAATCATCAAAGT+TGG	0.433244	3.3:-84672090	MS.gene38681:CDS
AACCGTGACCAACCTGTCAA+TGG	0.488257	3.3:-84672784	MS.gene38681:CDS
AACTGATTGGGATGCTAAGA+GGG	0.545752	3.3:-84672404	MS.gene38681:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAGTTCATACACTTACA+AGG	-	chr3.3:84671822-84671841	MS.gene38681:CDS	30.0%
AACAAAAATGGTACATATCG+TGG	-	chr3.3:84671380-84671399	MS.gene38681:CDS	30.0%
ACAATAAAGTTCATGAAGGA+AGG	-	chr3.3:84671914-84671933	MS.gene38681:CDS	30.0%
ACATATAAGGTCTAATACCT+TGG	-	chr3.3:84672365-84672384	MS.gene38681:CDS	30.0%
ATACACTTACAAGGAATCAA+TGG	-	chr3.3:84671831-84671850	MS.gene38681:CDS	30.0%
GAAAACATGGAGAACAAAAA+TGG	-	chr3.3:84671368-84671387	MS.gene38681:CDS	30.0%
GGATTCTAATTATCAACCAA+AGG	-	chr3.3:84672503-84672522	MS.gene38681:CDS	30.0%
GTTCTTTAGCACAACATATA+AGG	-	chr3.3:84672352-84672371	MS.gene38681:CDS	30.0%
TCTTGTGCATATTTCTTATG+TGG	-	chr3.3:84671986-84672005	MS.gene38681:CDS	30.0%
TGATGTTTATAGCTATGGAA+TGG	-	chr3.3:84672656-84672675	MS.gene38681:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	84670641	84672977	84670641	ID=MS.gene38681
chr3.3	mRNA	84670641	84672977	84670641	ID=MS.gene38681.t1;Parent=MS.gene38681
chr3.3	exon	84671683	84672977	84671683	ID=MS.gene38681.t1.exon1;Parent=MS.gene38681.t1
chr3.3	CDS	84671683	84672977	84671683	ID=cds.MS.gene38681.t1;Parent=MS.gene38681.t1
chr3.3	exon	84670641	84671535	84670641	ID=MS.gene38681.t1.exon2;Parent=MS.gene38681.t1
chr3.3	CDS	84670641	84671535	84670641	ID=cds.MS.gene38681.t1;Parent=MS.gene38681.t1

Gene Sequence

>MS.gene38681

ATGAATCAAGGTTCATCCCTCTCAGTGGAAGAACCAAAAGATATCATAGTATCACAAAATGGCATGTTCAGTGCTGGCTTCTATGCTGTTGGTGAAAATGCATATTCCTTTGCCATTTGGTTTTCTGAACCAAATCATCAAACCACAAAGCTTACCGTAGTTTGGATAGCAAACCGTGACCAACCTGTCAATGGAAAAGGCTCAAAACTTCACCTTCTCAAACATGGTAACCTTGTCTTAAGAGATGCCGATGAGTCTCACGTTTGGTCCACAAAGACTGTTTCAGATTCCTCTGTTCATCTCCGTCTTTTAAACACCGGTAACCTTGTTTTACATGGTGACGGTGTCACTTTGTGGCAAAGCTTTGATTTTCCTACTGACACACTTCTACCAAACCAAGTTTTCAACAGACATTCAAAGCTGGTTTGTTCAATAAGCGAAACAAACAAGTCATCAGGTTTTTATACGTTGTATTTCGACAACGACAATATTCTCCGTCTTCTTTACGACGGTCCTGAAGTATCAAGTATTTATTGGCCAGATCCTTGGCTAACTGATTGGGATGCTAAGAGGGCTGGTTACAATAACAGCAAAGTCGCGGTTTTGAATACTCTTGGTAACTTTAGTTCATCAGATGATTTCAATTTTATGACATCTGATTATGGAGATGCGCTGATGCAGAGAAGACTAAGACTTGATCCTGATGGAAATATTCGCACTTATAGTCGAAAACATGGAGAACAAAAATGGTACATATCGTGGCAAGCCAAATCAAGACCTTGCAGAATTCATGGTGTTTGTGGTGTAAATAGTTTATGTTCTTATTATAGTAACAGTGTTAAATGTTCTTGTCTTCCAGGCTATAAAATGAAGAATCATCAAAGTTGGGCTTATGGATGTGAACCAGAATTCTCTCTTTCATGCAGCAGAACCGAAACTCGGTTTCTAGTTGTATCGAATGTGGAGTTATTTGGTTATGATTATAGTATCATGATAAATTACACACTTGAACAATGCAAAGAGTTATGCTTGCAATTATGTAACTGCAAAGGTATCCAATATACCTATGTCAAAGCCGGCAGTGGTATACCTGGTACTTATACATGTTACCCAAAAATGCAGTTGCGAAACGCATATCGAATACCTTATTTCAACGCTGATTTGTACATAAAATTGCCAGCAAACAGTTCATACACTTACAAGGAATCAATGGATGATAAGTACAAACTTGCTTGTTTGGCCAATCGGAAAACAACAACTCTTGAAACATCATACAATAAAGTTCATGAAGGAAGGTATATTCGATTTTTGCTCTGGTTTGTAGGGGGGATGGGGGGATTAGAAATCTTGTGCATATTTCTTATGTGGTTTTTCTTTGTAAGAAAAAAACAACAAAGTTCAGATACAAGAGTGTATAATAATTTGTGCTTAATTGGTTTTAGAAAATTCAGTTATTCTGAATTGAAAAAAGCTACCAAAAGTTTTAGTCAAGAGATTGGCAAAGGCGCAGGAGGGATTGTTTACAAAGGTGTATTGTTGGATCAACGAGTTATCGCGGTGAAGAGACTCAAGGAAGCAAATCAAGGCGAAGAAGAGTTTCTCGCCGAAGTAAGCAGCATTGGAAAGCTTAACCACATGAATTTGATAGAAATGTGGGGTTATTGTGCAGAGGGAAAACATAGAATGCTTGTGTATGAGTTCATGGATAACGGTTCTTTAGCACAACATATAAGGTCTAATACCTTGGATTGGAGAAAAAGATTTGACATAGCTTTAGGTACTGCAAAAGGTTTGGCTTATATTCATGAAGAGTGTTTGGAGTGGATTTTGCATTGTGATGTGAAGCCACAAAACATTCTTTTGGATTCTAATTATCAACCAAAGGTTTCAGATTTTGGTTTGTCGAAACTGAGAAACAGGAAGGATTCTAAATTCTCTAGTTTTTCAAAGATACGAGGAACAAGAGGTTACATGGCACCTGAGTGGATTTTGAATCATTCAATAACATCTAAAGTTGATGTTTATAGCTATGGAATGGTTGTGTTGGAAATGATAACTGGAAGAAGTGCAACAAAGGATGTTGATATGGGTAATGAGAAACTAGGTTTGGTTATATGGTTGAGAGAGAAAAGACATAAAAGAATTTCATGGATTAATGAAATTATGGACCCCACCTTAGAAGGACGTTGTGATGAAAGTGAAGTTGAAGCTTTGGCTGAAGTGGCTATGCAATGTGCAGAGGAAGAGAAAGACAAGAGACCCACAATGAGTCATGTGGTAGAAGTGCTTCAGAAAATTTGCCGTGAAAATGATGATAAGGAATCAGCAAGTAGCTAG

Protein sequence

>MS.gene38681.t1

MNQGSSLSVEEPKDIIVSQNGMFSAGFYAVGENAYSFAIWFSEPNHQTTKLTVVWIANRDQPVNGKGSKLHLLKHGNLVLRDADESHVWSTKTVSDSSVHLRLLNTGNLVLHGDGVTLWQSFDFPTDTLLPNQVFNRHSKLVCSISETNKSSGFYTLYFDNDNILRLLYDGPEVSSIYWPDPWLTDWDAKRAGYNNSKVAVLNTLGNFSSSDDFNFMTSDYGDALMQRRLRLDPDGNIRTYSRKHGEQKWYISWQAKSRPCRIHGVCGVNSLCSYYSNSVKCSCLPGYKMKNHQSWAYGCEPEFSLSCSRTETRFLVVSNVELFGYDYSIMINYTLEQCKELCLQLCNCKGIQYTYVKAGSGIPGTYTCYPKMQLRNAYRIPYFNADLYIKLPANSSYTYKESMDDKYKLACLANRKTTTLETSYNKVHEGRKFSYSELKKATKSFSQEIGKGAGGIVYKGVLLDQRVIAVKRLKEANQGEEEFLAEVSSIGKLNHMNLIEMWGYCAEGKHRMLVYEFMDNGSLAQHIRSNTLDWRKRFDIALGTAKGLAYIHEECLEWILHCDVKPQNILLDSNYQPKVSDFGLSKLRNRKDSKFSSFSKIRGTRGYMAPEWILNHSITSKVDVYSYGMVVLEMITGRSATKDVDMGNEKLGLVIWLREKRHKRISWINEIMDPTLEGRCDESEVEALAEVAMQCAEEEKDKRPTMSHVVEVLQKICRENDDKESASS