Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38767.t1 | XP_003625012.1 | 100 | 482 | 0 | 0 | 1 | 482 | 1 | 482 | 1.40E-229 | 805.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38767.t1 | Q2HW56 | 100.0 | 482 | 0 | 0 | 1 | 482 | 1 | 482 | 3.4e-232 | 805.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38767.t1 | V7CXS4 | 89.8 | 482 | 36 | 5 | 1 | 478 | 1 | 473 | 1.2e-198 | 702.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene38767.t1 | TR | TRAF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38767.t1 | MTR_7g090020 | 100.000 | 482 | 0 | 0 | 1 | 482 | 1 | 482 | 0.0 | 993 |
| MS.gene38767.t1 | MTR_1g051025 | 79.208 | 505 | 69 | 8 | 1 | 482 | 1 | 492 | 0.0 | 727 |
| MS.gene38767.t1 | MTR_5g090770 | 34.239 | 368 | 212 | 9 | 24 | 386 | 66 | 408 | 2.36e-52 | 183 |
| MS.gene38767.t1 | MTR_5g090770 | 34.239 | 368 | 212 | 9 | 24 | 386 | 66 | 408 | 1.82e-51 | 184 |
| MS.gene38767.t1 | MTR_2g028950 | 35.156 | 384 | 222 | 9 | 6 | 386 | 44 | 403 | 7.91e-51 | 181 |
| MS.gene38767.t1 | MTR_2g028950 | 35.156 | 384 | 222 | 9 | 6 | 386 | 44 | 403 | 3.43e-50 | 180 |
| MS.gene38767.t1 | MTR_2g039880 | 30.376 | 372 | 216 | 7 | 24 | 388 | 65 | 400 | 4.14e-33 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38767.t1 | AT2G41370 | 78.893 | 488 | 76 | 10 | 3 | 478 | 4 | 476 | 0.0 | 744 |
| MS.gene38767.t1 | AT3G57130 | 75.625 | 480 | 82 | 8 | 2 | 476 | 4 | 453 | 0.0 | 713 |
| MS.gene38767.t1 | AT3G57130 | 75.301 | 166 | 33 | 2 | 2 | 162 | 4 | 166 | 2.32e-83 | 255 |
| MS.gene38767.t1 | AT4G19660 | 31.880 | 367 | 208 | 7 | 25 | 386 | 56 | 385 | 5.30e-46 | 169 |
| MS.gene38767.t1 | AT4G19660 | 31.880 | 367 | 208 | 7 | 25 | 386 | 56 | 385 | 7.53e-46 | 169 |
| MS.gene38767.t1 | AT5G45110 | 30.990 | 384 | 234 | 8 | 6 | 386 | 40 | 395 | 4.44e-42 | 158 |
| MS.gene38767.t1 | AT5G45110 | 30.990 | 384 | 234 | 8 | 6 | 386 | 40 | 395 | 7.46e-42 | 156 |
| MS.gene38767.t1 | AT1G64280 | 29.132 | 357 | 221 | 6 | 32 | 386 | 73 | 399 | 7.96e-33 | 132 |
| MS.gene38767.t1 | AT4G26120 | 29.640 | 361 | 209 | 9 | 33 | 386 | 76 | 398 | 1.26e-31 | 128 |
| MS.gene38767.t1 | AT4G26120 | 29.640 | 361 | 209 | 9 | 33 | 386 | 77 | 399 | 1.36e-31 | 128 |
Find 119 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATAGAAAATCTGAAGTT+AGG | 0.230108 | 7.1:+17268316 | None:intergenic |
| GATGCGAAGCTCTTCGATTT+TGG | 0.235029 | 7.1:+17268752 | None:intergenic |
| TGTGGGCCAGACCCACCTTC+TGG | 0.259914 | 7.1:-17270596 | MS.gene38767:CDS |
| CCATCAACTGTTCTCACATT+TGG | 0.276092 | 7.1:+17268366 | None:intergenic |
| AAACACAACCTTAGTTTGTT+TGG | 0.315039 | 7.1:+17268261 | None:intergenic |
| ATGATGGTGGTGAGGCATTA+AGG | 0.333824 | 7.1:+17268707 | None:intergenic |
| AACAAGACATGCACCAACTA+TGG | 0.344045 | 7.1:-17268854 | MS.gene38767:CDS |
| CTAATGCTTCATCAAGGTTT+AGG | 0.354695 | 7.1:+17268562 | None:intergenic |
| AAACAAACTAAGGTTGTGTT+TGG | 0.362323 | 7.1:-17268259 | MS.gene38767:CDS |
| CATCAACTGTTCTCACATTT+GGG | 0.364678 | 7.1:+17268367 | None:intergenic |
| GGAGATGGTCTCACCGGATA+TGG | 0.367743 | 7.1:-17268418 | MS.gene38767:CDS |
| TGCAGCCGATGTTAACTTCC+CGG | 0.370396 | 7.1:-17268478 | MS.gene38767:CDS |
| CAACCACGGTCACCACAATT+AGG | 0.374903 | 7.1:+17270419 | None:intergenic |
| AACTTCCCGGCTGGTCCAAC+GGG | 0.394050 | 7.1:-17268465 | MS.gene38767:CDS |
| CTATTCAAAGGTGCTGTCCC+TGG | 0.412212 | 7.1:-17268300 | MS.gene38767:CDS |
| CTGCAATTCTCAACGGCATA+AGG | 0.421725 | 7.1:+17268534 | None:intergenic |
| AGAAGTTGTGAAAGCCTTGT+TGG | 0.425240 | 7.1:-17268508 | MS.gene38767:CDS |
| TGTTATTGTTGTTGTGGCTA+TGG | 0.425330 | 7.1:+17268103 | None:intergenic |
| GAGATCTTAGTGAGTCTTCA+AGG | 0.426128 | 7.1:+17270753 | None:intergenic |
| GGGTTGACTCGGTTTCCTGA+TGG | 0.427587 | 7.1:+17270566 | None:intergenic |
| GAATAGAAAATCTGAAGTTA+GGG | 0.433840 | 7.1:+17268317 | None:intergenic |
| TCGTAACCAACTGAGTTAAC+TGG | 0.436058 | 7.1:+17270515 | None:intergenic |
| AGTACTTCAAGAATGGATTC+TGG | 0.438677 | 7.1:-17268033 | MS.gene38767:CDS |
| GGTTGACTCGGTTTCCTGAT+GGG | 0.440013 | 7.1:+17270567 | None:intergenic |
| AACACCAGACCTAGCTGAAC+CGG | 0.442219 | 7.1:+17270541 | None:intergenic |
| AGCAATACAGCCACCATATC+CGG | 0.442702 | 7.1:+17268405 | None:intergenic |
| TTCTTCAGAAAATTCTTCTG+TGG | 0.443436 | 7.1:-17270614 | MS.gene38767:CDS |
| CTAGTGAAACTCATGGTAAT+GGG | 0.452837 | 7.1:-17268591 | MS.gene38767:CDS |
| GCTAGTGAAACTCATGGTAA+TGG | 0.456091 | 7.1:-17268592 | MS.gene38767:CDS |
| TCTAATCCAGAAGGTGGGTC+TGG | 0.456640 | 7.1:+17270590 | None:intergenic |
| CATTAAGGAGCGGCGTGATA+AGG | 0.463719 | 7.1:+17268722 | None:intergenic |
| GGTTCAATGTGAGTTAATCC+AGG | 0.466615 | 7.1:+17268282 | None:intergenic |
| GTCTTCAAGGTCGGCTGCAG+CGG | 0.467472 | 7.1:+17268662 | None:intergenic |
| GTTATACCAGTTAACTCAGT+TGG | 0.472537 | 7.1:-17270521 | MS.gene38767:CDS |
| TCCCACCTTGTAGCAAAATC+AGG | 0.472615 | 7.1:-17268822 | MS.gene38767:CDS |
| AATCCATGTTATTGTTGTTG+TGG | 0.476042 | 7.1:+17268097 | None:intergenic |
| TCAAATGAGTACTTCAAGAA+TGG | 0.477419 | 7.1:-17268040 | MS.gene38767:CDS |
| GGTCGGCTGCAGCGGTGAGA+TGG | 0.490105 | 7.1:+17268670 | None:intergenic |
| CTTGTTATGTCAAGGGAAGA+AGG | 0.491332 | 7.1:-17268216 | MS.gene38767:CDS |
| GCCGATGTTAACTTCCCGGC+TGG | 0.496241 | 7.1:-17268474 | MS.gene38767:CDS |
| AGTTGATGGTGTTACACCCT+TGG | 0.497853 | 7.1:-17268352 | MS.gene38767:CDS |
| ATTGTGGTGACCGTGGTTGT+TGG | 0.504368 | 7.1:-17270415 | MS.gene38767:CDS |
| TAACTTCCCGGCTGGTCCAA+CGG | 0.512321 | 7.1:-17268466 | MS.gene38767:CDS |
| ACAACAATAACATGGATTCA+AGG | 0.512387 | 7.1:-17268092 | MS.gene38767:CDS |
| TCTTCAGAAAATTCTTCTGT+GGG | 0.516918 | 7.1:-17270613 | MS.gene38767:CDS |
| ACGCTTGTCCGTTGATGAGA+AGG | 0.520055 | 7.1:+17270711 | None:intergenic |
| CCAAATGTGAGAACAGTTGA+TGG | 0.521071 | 7.1:-17268366 | MS.gene38767:CDS |
| CCTTCTGGATTAGACCCATC+AGG | 0.521120 | 7.1:-17270581 | MS.gene38767:CDS |
| ACATTGAACCAAACAAACTA+AGG | 0.522706 | 7.1:-17268269 | MS.gene38767:CDS |
| TCACATTTGGGTCAGCGTGA+TGG | 0.522892 | 7.1:+17268379 | None:intergenic |
| GCTACATATTGCAGCGGAGA+TGG | 0.524554 | 7.1:-17268433 | MS.gene38767:CDS |
| TGCTACAAGGTGGGAACATG+TGG | 0.531996 | 7.1:+17268830 | None:intergenic |
| CTGCAGCTCTTGTTATGTCA+AGG | 0.533449 | 7.1:-17268224 | MS.gene38767:CDS |
| TAGGGTTCTTAGAATGTCCA+AGG | 0.536805 | 7.1:+17268335 | None:intergenic |
| CCATCCGGTTCAGCTAGGTC+TGG | 0.539454 | 7.1:-17270545 | MS.gene38767:CDS |
| GGAAACCGAGTCAACCCATC+CGG | 0.539988 | 7.1:-17270560 | MS.gene38767:CDS |
| GGTCGTGATGGTGAGGATGA+TGG | 0.543235 | 7.1:+17268691 | None:intergenic |
| TACTTAAACCTTCTCATCAA+CGG | 0.546164 | 7.1:-17270719 | MS.gene38767:CDS |
| ATGTATCATCATCACTCTCA+TGG | 0.548599 | 7.1:-17267970 | MS.gene38767:CDS |
| AGGTTGGTGTATCTTAACCT+TGG | 0.550322 | 7.1:-17268072 | MS.gene38767:CDS |
| CTTGCAGCCGCTAGATACTT+CGG | 0.551437 | 7.1:-17270350 | MS.gene38767:CDS |
| CTGAACCGGATGGGTTGACT+CGG | 0.552813 | 7.1:+17270555 | None:intergenic |
| TATTGTTGTTGTGGCTATGG+TGG | 0.553140 | 7.1:+17268106 | None:intergenic |
| CAATAACATGGATTCAAGGT+TGG | 0.554832 | 7.1:-17268088 | MS.gene38767:CDS |
| GGCCTAGGTTCATGTTTCTG+AGG | 0.555362 | 7.1:+17270440 | None:intergenic |
| TGCAGCGGAGATGGTCTCAC+CGG | 0.562963 | 7.1:-17268424 | MS.gene38767:CDS |
| GTGATGATGATAATACTCAC+AGG | 0.563231 | 7.1:-17268011 | MS.gene38767:CDS |
| AAACTCATGGTAATGGGAGA+AGG | 0.568060 | 7.1:-17268585 | MS.gene38767:CDS |
| ACAGCTTGCATTGCTCACTC+AGG | 0.569799 | 7.1:-17270321 | MS.gene38767:intron |
| GTAATGCTAATGCTTCATCA+AGG | 0.571238 | 7.1:+17268556 | None:intergenic |
| GTTCAATGTGAGTTAATCCA+GGG | 0.571864 | 7.1:+17268283 | None:intergenic |
| GTGAAAGCCTTGTTGGAACT+CGG | 0.572326 | 7.1:-17268501 | MS.gene38767:CDS |
| ATGCTTCAGTTTCTGTACAG+TGG | 0.576559 | 7.1:-17270479 | MS.gene38767:CDS |
| TTTCATTACATCTTCAATCG+AGG | 0.580013 | 7.1:+17268896 | None:intergenic |
| CTCGACGTCTGAGGAGTCGA+GGG | 0.584832 | 7.1:+17268614 | None:intergenic |
| TGCAGCTCTTGTTATGTCAA+GGG | 0.587236 | 7.1:-17268223 | MS.gene38767:CDS |
| AAGAGCAAGATCAACGGCTG+AGG | 0.588511 | 7.1:+17270379 | None:intergenic |
| CGGTCACCACAATTAGGCCT+AGG | 0.589003 | 7.1:+17270425 | None:intergenic |
| TTCTCTACTGCAATTCTCAA+CGG | 0.590267 | 7.1:+17268527 | None:intergenic |
| TCAACCCATCCGGTTCAGCT+AGG | 0.592108 | 7.1:-17270550 | MS.gene38767:CDS |
| CTAAGATGCATCTGTGTGCG+TGG | 0.593852 | 7.1:+17270651 | None:intergenic |
| TAAGGAGCGGCGTGATAAGG+AGG | 0.595576 | 7.1:+17268725 | None:intergenic |
| GGGAACATGTGGTCCATAGT+TGG | 0.598309 | 7.1:+17268841 | None:intergenic |
| GATGGGTCTAATCCAGAAGG+TGG | 0.598545 | 7.1:+17270584 | None:intergenic |
| ACAGAAACAACTAGCGAGCA+TGG | 0.599468 | 7.1:-17268928 | MS.gene38767:intron |
| AGTTAACTCAGTTGGTTACG+AGG | 0.607152 | 7.1:-17270513 | MS.gene38767:CDS |
| GATGGTCTCACCGGATATGG+TGG | 0.607668 | 7.1:-17268415 | MS.gene38767:CDS |
| CGAGGGCTCGTCTCATCCGA+CGG | 0.607669 | 7.1:+17268631 | None:intergenic |
| CAGCGGTGAGATGGTCGTGA+TGG | 0.610483 | 7.1:+17268679 | None:intergenic |
| CCAGACCTAGCTGAACCGGA+TGG | 0.611566 | 7.1:+17270545 | None:intergenic |
| GCTCGACGTCTGAGGAGTCG+AGG | 0.612628 | 7.1:+17268613 | None:intergenic |
| AGATCTTAGTGAGTCTTCAA+GGG | 0.612991 | 7.1:+17270754 | None:intergenic |
| TTTCACTAGCTCGACGTCTG+AGG | 0.613557 | 7.1:+17268605 | None:intergenic |
| TCTTCATTCATATTATGATG+AGG | 0.620406 | 7.1:+17268132 | None:intergenic |
| CCTGATGGGTCTAATCCAGA+AGG | 0.623455 | 7.1:+17270581 | None:intergenic |
| CAGACCTAGCTGAACCGGAT+GGG | 0.623790 | 7.1:+17270546 | None:intergenic |
| TGGTGAGGATGATGGTGGTG+AGG | 0.629304 | 7.1:+17268699 | None:intergenic |
| ATGAGAGTGATGATGATACA+TGG | 0.631388 | 7.1:+17267972 | None:intergenic |
| CGTGATGGTGAGGATGATGG+TGG | 0.631651 | 7.1:+17268694 | None:intergenic |
| CGTCGAGCTAGTGAAACTCA+TGG | 0.635542 | 7.1:-17268598 | MS.gene38767:CDS |
| TAGCCACAACAACAATAACA+TGG | 0.640552 | 7.1:-17268100 | MS.gene38767:CDS |
| CATGAACCTAGGCCTAATTG+TGG | 0.646688 | 7.1:-17270431 | MS.gene38767:CDS |
| GGCTGCACCGAGTTCCAACA+AGG | 0.646855 | 7.1:+17268494 | None:intergenic |
| TCATTTGAGTATTAGCACCA+AGG | 0.650291 | 7.1:+17268055 | None:intergenic |
| GTGAGATGGTCGTGATGGTG+AGG | 0.655300 | 7.1:+17268684 | None:intergenic |
| ATGGGTCTAATCCAGAAGGT+GGG | 0.656727 | 7.1:+17270585 | None:intergenic |
| ATCTCCGCTGCAATATGTAG+CGG | 0.657846 | 7.1:+17268435 | None:intergenic |
| AGTATCAAGAGCAAGATCAA+CGG | 0.660445 | 7.1:+17270373 | None:intergenic |
| AGGGTTCTTAGAATGTCCAA+GGG | 0.662287 | 7.1:+17268336 | None:intergenic |
| TTCAACTCCGAAGTATCTAG+CGG | 0.662542 | 7.1:+17270343 | None:intergenic |
| TTCCTCAGAAACATGAACCT+AGG | 0.668829 | 7.1:-17270442 | MS.gene38767:CDS |
| AACTCCGCTACATATTGCAG+CGG | 0.669845 | 7.1:-17268439 | MS.gene38767:CDS |
| GGTGGTGAGGCATTAAGGAG+CGG | 0.674544 | 7.1:+17268712 | None:intergenic |
| AATGTGTATGCCAACAACCA+CGG | 0.675672 | 7.1:+17270405 | None:intergenic |
| TGATGATGATAATACTCACA+GGG | 0.685503 | 7.1:-17268010 | MS.gene38767:CDS |
| ACCAGCCGGGAAGTTAACAT+CGG | 0.692763 | 7.1:+17268473 | None:intergenic |
| TTGAAGACCAGAAAATCCGT+CGG | 0.696642 | 7.1:-17268647 | MS.gene38767:CDS |
| AGGCCTAATTGTGGTGACCG+TGG | 0.704495 | 7.1:-17270422 | MS.gene38767:CDS |
| GAAACAACTAGCGAGCATGG+TGG | 0.736366 | 7.1:-17268925 | MS.gene38767:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAGGAATTTTTTTAT+AGG | - | chr7.1:17269675-17269694 | MS.gene38767:intron | 10.0% |
| !! | AAAACAATAATAAAGAGAAA+AGG | + | chr7.1:17268432-17268451 | None:intergenic | 15.0% |
| !! | ATCACAAATTAACAAAAATA+TGG | + | chr7.1:17269053-17269072 | None:intergenic | 15.0% |
| !! | TATGGAAAAAATAAAATCAA+AGG | + | chr7.1:17269035-17269054 | None:intergenic | 15.0% |
| !!! | CATCAATTTTTTAATGAAAT+AGG | - | chr7.1:17268700-17268719 | MS.gene38767:CDS | 15.0% |
| !! | ATAAACACATTGAAAATTAG+TGG | + | chr7.1:17269541-17269560 | None:intergenic | 20.0% |
| !!! | AACATTGATGCATTTTTTAT+AGG | - | chr7.1:17269661-17269680 | MS.gene38767:intron | 20.0% |
| !!! | ATGTTTTTTATCTGTCTTTA+CGG | + | chr7.1:17268982-17269001 | None:intergenic | 20.0% |
| !!! | TAATTTTCAATGTGTTTATG+TGG | - | chr7.1:17269542-17269561 | MS.gene38767:intron | 20.0% |
| ! | AAAAAACTACATTTCATGCA+AGG | + | chr7.1:17269419-17269438 | None:intergenic | 25.0% |
| ! | AAAAACTACATTTCATGCAA+GGG | + | chr7.1:17269418-17269437 | None:intergenic | 25.0% |
| ! | AAAGGAATCAATTAATGTGA+CGG | + | chr7.1:17269017-17269036 | None:intergenic | 25.0% |
| ! | AATTTAGAAACTCATTCTAG+TGG | + | chr7.1:17269163-17269182 | None:intergenic | 25.0% |
| ! | ATTTAGAAACTCATTCTAGT+GGG | + | chr7.1:17269162-17269181 | None:intergenic | 25.0% |
| ! | ATTTCATGTTATGTATGTAC+TGG | - | chr7.1:17269086-17269105 | MS.gene38767:intron | 25.0% |
| ! | CAATAATAAAGAGAAAAGGA+AGG | + | chr7.1:17268428-17268447 | None:intergenic | 25.0% |
| ! | GACAGTAGAATTAATTAATG+AGG | + | chr7.1:17268916-17268935 | None:intergenic | 25.0% |
| ! | GCTATAACAATCTAAACTAT+AGG | - | chr7.1:17269460-17269479 | MS.gene38767:intron | 25.0% |
| ! | TCAACAATAGATAGATAACT+TGG | - | chr7.1:17268796-17268815 | MS.gene38767:CDS | 25.0% |
| ! | TCTTCATTCATATTATGATG+AGG | + | chr7.1:17270586-17270605 | None:intergenic | 25.0% |
| ! | TTCTCTACTACACTTATTAA+TGG | + | chr7.1:17268457-17268476 | None:intergenic | 25.0% |
| !! | ACTTCAGATTTTCTATTCAA+AGG | - | chr7.1:17270403-17270422 | MS.gene38767:CDS | 25.0% |
| !! | CTATTTAAAACCTAATTGCT+TGG | - | chr7.1:17269619-17269638 | MS.gene38767:intron | 25.0% |
| !! | GAATAGAAAATCTGAAGTTA+GGG | + | chr7.1:17270401-17270420 | None:intergenic | 25.0% |
| !! | TCTTAATCATGATTGTGTTT+TGG | + | chr7.1:17269568-17269587 | None:intergenic | 25.0% |
| !! | TGAATAGAAAATCTGAAGTT+AGG | + | chr7.1:17270402-17270421 | None:intergenic | 25.0% |
| !!! | ATTTGGTCTTAAAGAAGAAA+AGG | - | chr7.1:17269269-17269288 | MS.gene38767:intron | 25.0% |
| !!! | ATTTTGGCTATGATATCAAT+AGG | + | chr7.1:17269950-17269969 | None:intergenic | 25.0% |
| !!! | CATATATAATAGCATTGATG+CGG | + | chr7.1:17269591-17269610 | None:intergenic | 25.0% |
| !!! | TTTGGTCTTAAAGAAGAAAA+GGG | - | chr7.1:17269270-17269289 | MS.gene38767:intron | 25.0% |
| !!! | TTTTGGCTATGATATCAATA+GGG | + | chr7.1:17269949-17269968 | None:intergenic | 25.0% |
| !!! | TTTTTGTTAATTAATGGGTG+AGG | - | chr7.1:17268644-17268663 | MS.gene38767:CDS | 25.0% |
| AAACAAACTAAGGTTGTGTT+TGG | - | chr7.1:17270456-17270475 | MS.gene38767:CDS | 30.0% | |
| ACAACAATAACATGGATTCA+AGG | - | chr7.1:17270623-17270642 | MS.gene38767:CDS | 30.0% | |
| ACATTGAACCAAACAAACTA+AGG | - | chr7.1:17270446-17270465 | MS.gene38767:CDS | 30.0% | |
| ATACATTCACTTTCCTCATT+TGG | - | chr7.1:17269252-17269271 | MS.gene38767:intron | 30.0% | |
| ATCTATCTATTGTTGATCGA+TGG | + | chr7.1:17268792-17268811 | None:intergenic | 30.0% | |
| ATGAGGAAAGTGAATGTATT+TGG | + | chr7.1:17269251-17269270 | None:intergenic | 30.0% | |
| ATGTATGTACTGGAAATTAG+AGG | - | chr7.1:17269096-17269115 | MS.gene38767:intron | 30.0% | |
| CAATAGATAGATAACTTGGT+TGG | - | chr7.1:17268800-17268819 | MS.gene38767:CDS | 30.0% | |
| GAAAGAGAGTTAGACATAAA+TGG | + | chr7.1:17269297-17269316 | None:intergenic | 30.0% | |
| GAAGACACAAGATCAAATAA+TGG | + | chr7.1:17268833-17268852 | None:intergenic | 30.0% | |
| TACTTAAACCTTCTCATCAA+CGG | - | chr7.1:17267996-17268015 | MS.gene38767:CDS | 30.0% | |
| TCAAATGAGTACTTCAAGAA+TGG | - | chr7.1:17270675-17270694 | MS.gene38767:CDS | 30.0% | |
| TCTATCTATTGTTGATCGAT+GGG | + | chr7.1:17268791-17268810 | None:intergenic | 30.0% | |
| TCTCTTTCATTTACCAAATG+AGG | - | chr7.1:17269309-17269328 | MS.gene38767:intron | 30.0% | |
| TCTTCAGAAAATTCTTCTGT+GGG | - | chr7.1:17268102-17268121 | MS.gene38767:CDS | 30.0% | |
| TGAGGAAAGTGAATGTATTT+GGG | + | chr7.1:17269250-17269269 | None:intergenic | 30.0% | |
| TTCTTCAGAAAATTCTTCTG+TGG | - | chr7.1:17268101-17268120 | MS.gene38767:CDS | 30.0% | |
| TTTCATTACATCTTCAATCG+AGG | + | chr7.1:17269822-17269841 | None:intergenic | 30.0% | |
| ! | AATCCATGTTATTGTTGTTG+TGG | + | chr7.1:17270621-17270640 | None:intergenic | 30.0% |
| ! | TGATGATGATAATACTCACA+GGG | - | chr7.1:17270705-17270724 | MS.gene38767:CDS | 30.0% |
| !! | AAACACAACCTTAGTTTGTT+TGG | + | chr7.1:17270457-17270476 | None:intergenic | 30.0% |
| !! | TTCTTCTTTAAGACCAAATG+AGG | + | chr7.1:17269268-17269287 | None:intergenic | 30.0% |
| AGATCTTAGTGAGTCTTCAA+GGG | + | chr7.1:17267964-17267983 | None:intergenic | 35.0% | |
| AGTATCAAGAGCAAGATCAA+CGG | + | chr7.1:17268345-17268364 | None:intergenic | 35.0% | |
| ATGTATCATCATCACTCTCA+TGG | - | chr7.1:17270745-17270764 | MS.gene38767:CDS | 35.0% | |
| CAATAACATGGATTCAAGGT+TGG | - | chr7.1:17270627-17270646 | MS.gene38767:CDS | 35.0% | |
| CATCAACTGTTCTCACATTT+GGG | + | chr7.1:17270351-17270370 | None:intergenic | 35.0% | |
| CATGCAAGGGAAAAAAGTTT+GGG | + | chr7.1:17269405-17269424 | None:intergenic | 35.0% | |
| CATTAATACAACTGCGATTG+AGG | - | chr7.1:17269508-17269527 | MS.gene38767:intron | 35.0% | |
| CGATTTCATTCCAAGCAATT+AGG | + | chr7.1:17269632-17269651 | None:intergenic | 35.0% | |
| CTAATGCTTCATCAAGGTTT+AGG | + | chr7.1:17270156-17270175 | None:intergenic | 35.0% | |
| CTAGTGAAACTCATGGTAAT+GGG | - | chr7.1:17270124-17270143 | MS.gene38767:intron | 35.0% | |
| GTAATGCTAATGCTTCATCA+AGG | + | chr7.1:17270162-17270181 | None:intergenic | 35.0% | |
| GTTATACCAGTTAACTCAGT+TGG | - | chr7.1:17268194-17268213 | MS.gene38767:CDS | 35.0% | |
| GTTCAATGTGAGTTAATCCA+GGG | + | chr7.1:17270435-17270454 | None:intergenic | 35.0% | |
| TAGCCACAACAACAATAACA+TGG | - | chr7.1:17270615-17270634 | MS.gene38767:CDS | 35.0% | |
| TCATGCAAGGGAAAAAAGTT+TGG | + | chr7.1:17269406-17269425 | None:intergenic | 35.0% | |
| TCATTTGAGTATTAGCACCA+AGG | + | chr7.1:17270663-17270682 | None:intergenic | 35.0% | |
| TTCTCTACTGCAATTCTCAA+CGG | + | chr7.1:17270191-17270210 | None:intergenic | 35.0% | |
| ! | ACATGACAGTTTTCTCGATT+TGG | - | chr7.1:17269126-17269145 | MS.gene38767:intron | 35.0% |
| ! | AGATGTTTTGCAAGTACTTC+TGG | + | chr7.1:17269926-17269945 | None:intergenic | 35.0% |
| ! | AGGGAAAAAAGTTTGGGATT+TGG | + | chr7.1:17269399-17269418 | None:intergenic | 35.0% |
| ! | AGTACTTCAAGAATGGATTC+TGG | - | chr7.1:17270682-17270701 | MS.gene38767:CDS | 35.0% |
| ! | ATGAGAGTGATGATGATACA+TGG | + | chr7.1:17270746-17270765 | None:intergenic | 35.0% |
| ! | ATGTTTTGCAAGTACTTCTG+GGG | + | chr7.1:17269924-17269943 | None:intergenic | 35.0% |
| ! | GAGGAATGAGAATGAGATTT+TGG | - | chr7.1:17268663-17268682 | MS.gene38767:CDS | 35.0% |
| ! | GATGTTTTGCAAGTACTTCT+GGG | + | chr7.1:17269925-17269944 | None:intergenic | 35.0% |
| ! | GTGATGATGATAATACTCAC+AGG | - | chr7.1:17270704-17270723 | MS.gene38767:CDS | 35.0% |
| ! | TGTTATTGTTGTTGTGGCTA+TGG | + | chr7.1:17270615-17270634 | None:intergenic | 35.0% |
| !!! | GTGGTTTTGTTATCCTCATT+TGG | + | chr7.1:17269325-17269344 | None:intergenic | 35.0% |
| !!! | TCGTATGTTTTTTGGGTCTT+GGG | - | chr7.1:17268564-17268583 | MS.gene38767:CDS | 35.0% |
| !!! | TGACCAGTCGTATGTTTTTT+GGG | - | chr7.1:17268557-17268576 | MS.gene38767:CDS | 35.0% |
| !!! | TGTCTTGTTTTCTTGATGCT+AGG | + | chr7.1:17269850-17269869 | None:intergenic | 35.0% |
| !!! | TTCCACAGTTACTGGTTTTT+GGG | - | chr7.1:17268590-17268609 | MS.gene38767:CDS | 35.0% |
| !!! | TTTCCACAGTTACTGGTTTT+TGG | - | chr7.1:17268589-17268608 | MS.gene38767:CDS | 35.0% |
| AACAAGACATGCACCAACTA+TGG | - | chr7.1:17269861-17269880 | MS.gene38767:intron | 40.0% | |
| AATGTGTATGCCAACAACCA+CGG | + | chr7.1:17268313-17268332 | None:intergenic | 40.0% | |
| AGACCCAAAAAACATACGAC+TGG | + | chr7.1:17268563-17268582 | None:intergenic | 40.0% | |
| AGCAAAGAGAAGAAAGTGAG+TGG | + | chr7.1:17269344-17269363 | None:intergenic | 40.0% | |
| AGGGTTCTTAGAATGTCCAA+GGG | + | chr7.1:17270382-17270401 | None:intergenic | 40.0% | |
| AGTTAACTCAGTTGGTTACG+AGG | - | chr7.1:17268202-17268221 | MS.gene38767:CDS | 40.0% | |
| ATGCTTCAGTTTCTGTACAG+TGG | - | chr7.1:17268236-17268255 | MS.gene38767:CDS | 40.0% | |
| CCAAATGTGAGAACAGTTGA+TGG | - | chr7.1:17270349-17270368 | MS.gene38767:CDS | 40.0% | |
| CCATCAACTGTTCTCACATT+TGG | + | chr7.1:17270352-17270371 | None:intergenic | 40.0% | |
| GAGATCTTAGTGAGTCTTCA+AGG | + | chr7.1:17267965-17267984 | None:intergenic | 40.0% | |
| GCTAGTGAAACTCATGGTAA+TGG | - | chr7.1:17270123-17270142 | MS.gene38767:intron | 40.0% | |
| GGTTCAATGTGAGTTAATCC+AGG | + | chr7.1:17270436-17270455 | None:intergenic | 40.0% | |
| TAGGGTTCTTAGAATGTCCA+AGG | + | chr7.1:17270383-17270402 | None:intergenic | 40.0% | |
| TCAAGCAACAAACTGTGAAG+AGG | + | chr7.1:17268952-17268971 | None:intergenic | 40.0% | |
| TCGTAACCAACTGAGTTAAC+TGG | + | chr7.1:17268203-17268222 | None:intergenic | 40.0% | |
| TTCCCAAAAACCAGTAACTG+TGG | + | chr7.1:17268595-17268614 | None:intergenic | 40.0% | |
| TTCCTCAGAAACATGAACCT+AGG | - | chr7.1:17268273-17268292 | MS.gene38767:CDS | 40.0% | |
| TTGAAGACCAGAAAATCCGT+CGG | - | chr7.1:17270068-17270087 | MS.gene38767:intron | 40.0% | |
| TTGGGAATTTCCACAGTTAC+TGG | - | chr7.1:17268582-17268601 | MS.gene38767:CDS | 40.0% | |
| ! | ACCTGATTTTGCTACAAGGT+GGG | + | chr7.1:17269897-17269916 | None:intergenic | 40.0% |
| ! | AGAAGTTGTGAAAGCCTTGT+TGG | - | chr7.1:17270207-17270226 | MS.gene38767:intron | 40.0% |
| ! | CTTGTTATGTCAAGGGAAGA+AGG | - | chr7.1:17270499-17270518 | MS.gene38767:CDS | 40.0% |
| ! | GAAGACCTGATTTTGCTACA+AGG | + | chr7.1:17269901-17269920 | None:intergenic | 40.0% |
| ! | TATTGTTGTTGTGGCTATGG+TGG | + | chr7.1:17270612-17270631 | None:intergenic | 40.0% |
| ! | TGCAGCTCTTGTTATGTCAA+GGG | - | chr7.1:17270492-17270511 | MS.gene38767:CDS | 40.0% |
| ! | TGTTTTGCAAGTACTTCTGG+GGG | + | chr7.1:17269923-17269942 | None:intergenic | 40.0% |
| ! | TTCAACTCCGAAGTATCTAG+CGG | + | chr7.1:17268375-17268394 | None:intergenic | 40.0% |
| !! | AAACTCATGGTAATGGGAGA+AGG | - | chr7.1:17270130-17270149 | MS.gene38767:intron | 40.0% |
| !! | AGGTTGGTGTATCTTAACCT+TGG | - | chr7.1:17270643-17270662 | MS.gene38767:CDS | 40.0% |
| !! | GATTTTCTGGTCTTCAAGGT+CGG | + | chr7.1:17270065-17270084 | None:intergenic | 40.0% |
| !!! | AGTTACTGGTTTTTGGGAAC+TGG | - | chr7.1:17268596-17268615 | MS.gene38767:CDS | 40.0% |
| !!! | GTCGTATGTTTTTTGGGTCT+TGG | - | chr7.1:17268563-17268582 | MS.gene38767:CDS | 40.0% |
| !!! | GTGACCAGTCGTATGTTTTT+TGG | - | chr7.1:17268556-17268575 | MS.gene38767:CDS | 40.0% |
| !!! | GTTACTGGTTTTTGGGAACT+GGG | - | chr7.1:17268597-17268616 | MS.gene38767:CDS | 40.0% |
| AACTCCGCTACATATTGCAG+CGG | - | chr7.1:17270276-17270295 | MS.gene38767:intron | 45.0% | |
| ACAGAAACAACTAGCGAGCA+TGG | - | chr7.1:17269787-17269806 | MS.gene38767:intron | 45.0% | |
| AGCAATACAGCCACCATATC+CGG | + | chr7.1:17270313-17270332 | None:intergenic | 45.0% | |
| ATCTCCGCTGCAATATGTAG+CGG | + | chr7.1:17270283-17270302 | None:intergenic | 45.0% | |
| ATGGGTCTAATCCAGAAGGT+GGG | + | chr7.1:17268133-17268152 | None:intergenic | 45.0% | |
| CATGAACCTAGGCCTAATTG+TGG | - | chr7.1:17268284-17268303 | MS.gene38767:CDS | 45.0% | |
| CTGCAATTCTCAACGGCATA+AGG | + | chr7.1:17270184-17270203 | None:intergenic | 45.0% | |
| TCCCACCTTGTAGCAAAATC+AGG | - | chr7.1:17269893-17269912 | MS.gene38767:intron | 45.0% | |
| ! | CTGCAGCTCTTGTTATGTCA+AGG | - | chr7.1:17270491-17270510 | MS.gene38767:CDS | 45.0% |
| ! | GACCTGATTTTGCTACAAGG+TGG | + | chr7.1:17269898-17269917 | None:intergenic | 45.0% |
| ! | GATGCGAAGCTCTTCGATTT+TGG | + | chr7.1:17269966-17269985 | None:intergenic | 45.0% |
| !! | AGTTGATGGTGTTACACCCT+TGG | - | chr7.1:17270363-17270382 | MS.gene38767:CDS | 45.0% |
| !! | ATGATGGTGGTGAGGCATTA+AGG | + | chr7.1:17270011-17270030 | None:intergenic | 45.0% |
| !! | GACGGATTTTCTGGTCTTCA+AGG | + | chr7.1:17270069-17270088 | None:intergenic | 45.0% |
| !! | GTGAAAGCCTTGTTGGAACT+CGG | - | chr7.1:17270214-17270233 | MS.gene38767:intron | 45.0% |
| !!! | ATTATTTTTTGTTAATTAAT+GGG | - | chr7.1:17268639-17268658 | MS.gene38767:CDS | 5.0% |
| !!! | TATTATTTTTTGTTAATTAA+TGG | - | chr7.1:17268638-17268657 | MS.gene38767:CDS | 5.0% |
| AACACCAGACCTAGCTGAAC+CGG | + | chr7.1:17268177-17268196 | None:intergenic | 50.0% | |
| AAGAGCAAGATCAACGGCTG+AGG | + | chr7.1:17268339-17268358 | None:intergenic | 50.0% | |
| ACAGCTTGCATTGCTCACTC+AGG | - | chr7.1:17268394-17268413 | MS.gene38767:CDS | 50.0% | |
| ACCAGCCGGGAAGTTAACAT+CGG | + | chr7.1:17270245-17270264 | None:intergenic | 50.0% | |
| ATTGTGGTGACCGTGGTTGT+TGG | - | chr7.1:17268300-17268319 | MS.gene38767:CDS | 50.0% | |
| CAACCACGGTCACCACAATT+AGG | + | chr7.1:17268299-17268318 | None:intergenic | 50.0% | |
| CATTAAGGAGCGGCGTGATA+AGG | + | chr7.1:17269996-17270015 | None:intergenic | 50.0% | |
| CGTCGAGCTAGTGAAACTCA+TGG | - | chr7.1:17270117-17270136 | MS.gene38767:intron | 50.0% | |
| CTAAGATGCATCTGTGTGCG+TGG | + | chr7.1:17268067-17268086 | None:intergenic | 50.0% | |
| CTTGCAGCCGCTAGATACTT+CGG | - | chr7.1:17268365-17268384 | MS.gene38767:CDS | 50.0% | |
| GAAACAACTAGCGAGCATGG+TGG | - | chr7.1:17269790-17269809 | MS.gene38767:intron | 50.0% | |
| GATGGGTCTAATCCAGAAGG+TGG | + | chr7.1:17268134-17268153 | None:intergenic | 50.0% | |
| GCTACATATTGCAGCGGAGA+TGG | - | chr7.1:17270282-17270301 | MS.gene38767:intron | 50.0% | |
| GGGAACATGTGGTCCATAGT+TGG | + | chr7.1:17269877-17269896 | None:intergenic | 50.0% | |
| TCACATTTGGGTCAGCGTGA+TGG | + | chr7.1:17270339-17270358 | None:intergenic | 50.0% | |
| TCTAATCCAGAAGGTGGGTC+TGG | + | chr7.1:17268128-17268147 | None:intergenic | 50.0% | |
| TGCAGCCGATGTTAACTTCC+CGG | - | chr7.1:17270237-17270256 | MS.gene38767:intron | 50.0% | |
| TGCTACAAGGTGGGAACATG+TGG | + | chr7.1:17269888-17269907 | None:intergenic | 50.0% | |
| TTTCACTAGCTCGACGTCTG+AGG | + | chr7.1:17270113-17270132 | None:intergenic | 50.0% | |
| ! | ACGCTTGTCCGTTGATGAGA+AGG | + | chr7.1:17268007-17268026 | None:intergenic | 50.0% |
| ! | CCTGATGGGTCTAATCCAGA+AGG | + | chr7.1:17268137-17268156 | None:intergenic | 50.0% |
| ! | CCTTCTGGATTAGACCCATC+AGG | - | chr7.1:17268134-17268153 | MS.gene38767:CDS | 50.0% |
| ! | GGCCTAGGTTCATGTTTCTG+AGG | + | chr7.1:17268278-17268297 | None:intergenic | 50.0% |
| !! | CTATTCAAAGGTGCTGTCCC+TGG | - | chr7.1:17270415-17270434 | MS.gene38767:CDS | 50.0% |
| !! | CTGGTTTTTGGGAACTGGGA+AGG | - | chr7.1:17268601-17268620 | MS.gene38767:CDS | 50.0% |
| !! | GACGTTGTTTTCAGCGTCGA+AGG | - | chr7.1:17268032-17268051 | MS.gene38767:CDS | 50.0% |
| !! | GGTTGACTCGGTTTCCTGAT+GGG | + | chr7.1:17268151-17268170 | None:intergenic | 50.0% |
| !! | GTCTCATCCGACGGATTTTC+TGG | + | chr7.1:17270078-17270097 | None:intergenic | 50.0% |
| !! | TGTAGCGGAGTTTTACCCGT+TGG | + | chr7.1:17270268-17270287 | None:intergenic | 50.0% |
| AGGCCTAATTGTGGTGACCG+TGG | - | chr7.1:17268293-17268312 | MS.gene38767:CDS | 55.0% | |
| CAGACCTAGCTGAACCGGAT+GGG | + | chr7.1:17268172-17268191 | None:intergenic | 55.0% | |
| CGGTCACCACAATTAGGCCT+AGG | + | chr7.1:17268293-17268312 | None:intergenic | 55.0% | |
| CGTGCACTAGCTGACTGTGT+TGG | + | chr7.1:17269215-17269234 | None:intergenic | 55.0% | |
| GATGGTCTCACCGGATATGG+TGG | - | chr7.1:17270300-17270319 | MS.gene38767:intron | 55.0% | |
| GGAAACCGAGTCAACCCATC+CGG | - | chr7.1:17268155-17268174 | MS.gene38767:CDS | 55.0% | |
| GGAGATGGTCTCACCGGATA+TGG | - | chr7.1:17270297-17270316 | MS.gene38767:intron | 55.0% | |
| TAAGGAGCGGCGTGATAAGG+AGG | + | chr7.1:17269993-17270012 | None:intergenic | 55.0% | |
| TCAACCCATCCGGTTCAGCT+AGG | - | chr7.1:17268165-17268184 | MS.gene38767:CDS | 55.0% | |
| ! | CGTGATGGTGAGGATGATGG+TGG | + | chr7.1:17270024-17270043 | None:intergenic | 55.0% |
| ! | GGTCGTGATGGTGAGGATGA+TGG | + | chr7.1:17270027-17270046 | None:intergenic | 55.0% |
| ! | GGTGGTGAGGCATTAAGGAG+CGG | + | chr7.1:17270006-17270025 | None:intergenic | 55.0% |
| ! | GTGAGATGGTCGTGATGGTG+AGG | + | chr7.1:17270034-17270053 | None:intergenic | 55.0% |
| ! | GTTTTACCCGTTGGACCAGC+CGG | + | chr7.1:17270259-17270278 | None:intergenic | 55.0% |
| ! | TAACTTCCCGGCTGGTCCAA+CGG | - | chr7.1:17270249-17270268 | MS.gene38767:intron | 55.0% |
| ! | TTTTACCCGTTGGACCAGCC+GGG | + | chr7.1:17270258-17270277 | None:intergenic | 55.0% |
| !! | CTGAACCGGATGGGTTGACT+CGG | + | chr7.1:17268163-17268182 | None:intergenic | 55.0% |
| !! | GGGTTGACTCGGTTTCCTGA+TGG | + | chr7.1:17268152-17268171 | None:intergenic | 55.0% |
| !! | TGGTGAGGATGATGGTGGTG+AGG | + | chr7.1:17270019-17270038 | None:intergenic | 55.0% |
| CAGCGGTGAGATGGTCGTGA+TGG | + | chr7.1:17270039-17270058 | None:intergenic | 60.0% | |
| CCAGACCTAGCTGAACCGGA+TGG | + | chr7.1:17268173-17268192 | None:intergenic | 60.0% | |
| CCATCCGGTTCAGCTAGGTC+TGG | - | chr7.1:17268170-17268189 | MS.gene38767:CDS | 60.0% | |
| CTCGACGTCTGAGGAGTCGA+GGG | + | chr7.1:17270104-17270123 | None:intergenic | 60.0% | |
| GCCGATGTTAACTTCCCGGC+TGG | - | chr7.1:17270241-17270260 | MS.gene38767:intron | 60.0% | |
| GGCTGCACCGAGTTCCAACA+AGG | + | chr7.1:17270224-17270243 | None:intergenic | 60.0% | |
| GTCTTCAAGGTCGGCTGCAG+CGG | + | chr7.1:17270056-17270075 | None:intergenic | 60.0% | |
| TGCAGCGGAGATGGTCTCAC+CGG | - | chr7.1:17270291-17270310 | MS.gene38767:intron | 60.0% | |
| ! | AACTTCCCGGCTGGTCCAAC+GGG | - | chr7.1:17270250-17270269 | MS.gene38767:intron | 60.0% |
| CGAGGGCTCGTCTCATCCGA+CGG | + | chr7.1:17270087-17270106 | None:intergenic | 65.0% | |
| GCTCGACGTCTGAGGAGTCG+AGG | + | chr7.1:17270105-17270124 | None:intergenic | 65.0% | |
| TGTGGGCCAGACCCACCTTC+TGG | - | chr7.1:17268119-17268138 | MS.gene38767:CDS | 65.0% | |
| GGTCGGCTGCAGCGGTGAGA+TGG | + | chr7.1:17270048-17270067 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 17267957 | 17270780 | 17267957 | ID=MS.gene38767 |
| chr7.1 | mRNA | 17267957 | 17270780 | 17267957 | ID=MS.gene38767.t1;Parent=MS.gene38767 |
| chr7.1 | exon | 17270322 | 17270780 | 17270322 | ID=MS.gene38767.t1.exon1;Parent=MS.gene38767.t1 |
| chr7.1 | CDS | 17270322 | 17270780 | 17270322 | ID=cds.MS.gene38767.t1;Parent=MS.gene38767.t1 |
| chr7.1 | exon | 17267957 | 17268946 | 17267957 | ID=MS.gene38767.t1.exon2;Parent=MS.gene38767.t1 |
| chr7.1 | CDS | 17267957 | 17268946 | 17267957 | ID=cds.MS.gene38767.t1;Parent=MS.gene38767.t1 |
| Gene Sequence |
| Protein sequence |
