Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38769.t1 | XP_003625016.2 | 94.5 | 379 | 21 | 0 | 1 | 379 | 1 | 379 | 1.00E-206 | 729.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38769.t1 | F4K933 | 41.9 | 382 | 183 | 8 | 7 | 378 | 17 | 369 | 5.1e-74 | 279.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38769.t1 | G7KQU4 | 94.5 | 379 | 21 | 0 | 1 | 379 | 1 | 379 | 7.3e-207 | 729.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene38769.t1 | TF | HRT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38769.t1 | MTR_7g090060 | 94.459 | 379 | 21 | 0 | 1 | 379 | 1 | 379 | 0.0 | 744 |
| MS.gene38769.t1 | MTR_6g092520 | 73.995 | 373 | 86 | 3 | 6 | 378 | 2 | 363 | 0.0 | 554 |
| MS.gene38769.t1 | MTR_6g092500 | 61.062 | 113 | 39 | 1 | 3 | 115 | 46 | 153 | 3.42e-42 | 145 |
| MS.gene38769.t1 | MTR_6g092480 | 43.902 | 123 | 43 | 1 | 125 | 247 | 9 | 105 | 7.71e-25 | 106 |
| MS.gene38769.t1 | MTR_6g092480 | 65.909 | 44 | 15 | 0 | 270 | 313 | 311 | 354 | 1.91e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38769.t1 | AT5G56780 | 41.753 | 388 | 187 | 9 | 1 | 378 | 11 | 369 | 4.98e-90 | 280 |
| MS.gene38769.t1 | AT5G56770 | 41.954 | 174 | 77 | 4 | 2 | 174 | 51 | 201 | 1.23e-34 | 128 |
Find 109 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACAACCTTCCTCAGAAAT+TGG | 0.157069 | 7.1:-17251596 | MS.gene38769:CDS |
| CTACATCATGGCTGGCATTT+TGG | 0.209063 | 7.1:+17250030 | None:intergenic |
| AACGGGAAGGTCATTGTTTC+AGG | 0.214002 | 7.1:-17251374 | MS.gene38769:CDS |
| TTCTCCTCCCTTTATGTTCC+TGG | 0.242712 | 7.1:+17249880 | None:intergenic |
| GGCAGCTTGCTTGATTTAAT+TGG | 0.245613 | 7.1:+17250356 | None:intergenic |
| CCGATGGTTCTATTTGTAAA+AGG | 0.246592 | 7.1:-17250178 | MS.gene38769:CDS |
| AGCTGTGTCGCGTAGTAATC+TGG | 0.263388 | 7.1:-17251548 | MS.gene38769:CDS |
| ACTTCCCAATTGTTTATAGA+TGG | 0.283082 | 7.1:-17251336 | MS.gene38769:CDS |
| TTGGTATCCCCACTTTCCTC+TGG | 0.290433 | 7.1:+17250375 | None:intergenic |
| GATTCCACACATAATGGTTT+TGG | 0.295658 | 7.1:+17249959 | None:intergenic |
| ATTCTCATTCCTTTGTGTTC+AGG | 0.303340 | 7.1:+17250128 | None:intergenic |
| CAAGATGATTCCACACATAA+TGG | 0.329184 | 7.1:+17249953 | None:intergenic |
| TGTAGAAGACAACCGGTTAA+AGG | 0.332466 | 7.1:-17249915 | MS.gene38769:CDS |
| CTTGGGTGATCTGATTGCTT+TGG | 0.351144 | 7.1:+17250091 | None:intergenic |
| GCATTGTAGGTAATGCTTAT+AGG | 0.363449 | 7.1:-17250055 | MS.gene38769:CDS |
| TTCTTATCGGTCCTTCTGAT+TGG | 0.365524 | 7.1:-17251663 | MS.gene38769:CDS |
| TCAGAATTAGAAAGCATTGT+AGG | 0.383504 | 7.1:-17250068 | MS.gene38769:CDS |
| GGTGAAAGGTAGAAGCAATT+TGG | 0.393179 | 7.1:+17250397 | None:intergenic |
| AAAAGGTGCCAGGAACATAA+AGG | 0.395561 | 7.1:-17249888 | MS.gene38769:CDS |
| GGAGCCCATCTATAAACAAT+TGG | 0.397811 | 7.1:+17251331 | None:intergenic |
| AACCGGTTAAAGGAAGAAAA+AGG | 0.410668 | 7.1:-17249905 | MS.gene38769:CDS |
| CATGAGAATGCTAAAATTTG+CGG | 0.413022 | 7.1:-17250212 | MS.gene38769:CDS |
| CGCATAGTTGTGGTTTACCT+TGG | 0.418108 | 7.1:-17251490 | MS.gene38769:CDS |
| GCCTCTGACAGATGACAAAC+TGG | 0.430967 | 7.1:-17250336 | MS.gene38769:CDS |
| CACAACCTTCCTCAGAAATT+GGG | 0.434094 | 7.1:-17251595 | MS.gene38769:CDS |
| CCCGTGTGTTCAAATTAAAC+AGG | 0.435752 | 7.1:-17250280 | MS.gene38769:CDS |
| TCTTATCGGTCCTTCTGATT+GGG | 0.443716 | 7.1:-17251662 | MS.gene38769:CDS |
| GCAGCTGAGATTCTGTTCTC+AGG | 0.444652 | 7.1:+17250534 | None:intergenic |
| CTTCCCAATTGTTTATAGAT+GGG | 0.451465 | 7.1:-17251335 | MS.gene38769:CDS |
| GTCACGTCCTAGGATAGTTC+AGG | 0.452457 | 7.1:-17250258 | MS.gene38769:CDS |
| GTGGAGGGTCTTCTACATCA+TGG | 0.463412 | 7.1:+17250018 | None:intergenic |
| GGGTGATCTGATTGCTTTGG+CGG | 0.466767 | 7.1:+17250094 | None:intergenic |
| AGAGCAAGACTCCAGCGTTA+TGG | 0.467691 | 7.1:-17251451 | MS.gene38769:CDS |
| CCTTCCTCAGAAATTGGGTC+CGG | 0.470635 | 7.1:-17251590 | MS.gene38769:CDS |
| TGACTCTTAACCATTCTTTG+TGG | 0.474955 | 7.1:+17249999 | None:intergenic |
| GGAAGACTATTCCAAAGAAA+AGG | 0.474965 | 7.1:-17251641 | MS.gene38769:CDS |
| AAGGTTGTGAATCCTGTATC+TGG | 0.479106 | 7.1:+17251609 | None:intergenic |
| AGCATTTGAAGAATATCATC+AGG | 0.480750 | 7.1:+17250461 | None:intergenic |
| AGGAAGGATCTACCAGATAC+AGG | 0.491164 | 7.1:-17251621 | MS.gene38769:CDS |
| AATTAAACAGGTCACGTCCT+AGG | 0.491462 | 7.1:-17250268 | MS.gene38769:CDS |
| CATTATGTGTGGAATCATCT+TGG | 0.495040 | 7.1:-17249952 | MS.gene38769:CDS |
| ATGCTCAACAAATTAGCTTC+AGG | 0.496009 | 7.1:-17250443 | MS.gene38769:CDS |
| CTCCAGCGTTATGGCAGGAA+TGG | 0.496259 | 7.1:-17251442 | MS.gene38769:CDS |
| TGGCAAGCTTGTAAATTTCA+CGG | 0.499268 | 7.1:+17251524 | None:intergenic |
| CTTCCTCAGAAATTGGGTCC+GGG | 0.499654 | 7.1:-17251589 | MS.gene38769:CDS |
| CCCACTTTCCTCTGGGTGAA+AGG | 0.500019 | 7.1:+17250383 | None:intergenic |
| AATGCTTTCTAATTCTGACT+TGG | 0.501548 | 7.1:+17250073 | None:intergenic |
| TGGTATCCCCACTTTCCTCT+GGG | 0.502512 | 7.1:+17250376 | None:intergenic |
| ATGCTTTCTAATTCTGACTT+GGG | 0.502963 | 7.1:+17250074 | None:intergenic |
| TCTTAACCATTCTTTGTGGA+GGG | 0.504208 | 7.1:+17250003 | None:intergenic |
| CTCTTAACCATTCTTTGTGG+AGG | 0.504735 | 7.1:+17250002 | None:intergenic |
| ATCCACTTGTAGAAGACAAC+CGG | 0.506149 | 7.1:-17249922 | MS.gene38769:CDS |
| AGAAGACCCTCCACAAAGAA+TGG | 0.506283 | 7.1:-17250009 | MS.gene38769:CDS |
| GAGCCCATCTATAAACAATT+GGG | 0.508603 | 7.1:+17251332 | None:intergenic |
| TTCTATTTGTAAAAGGCCAC+CGG | 0.517076 | 7.1:-17250171 | MS.gene38769:CDS |
| ACCTGTTTAATTTGAACACA+CGG | 0.522258 | 7.1:+17250279 | None:intergenic |
| GTGGTATCCTGAACTATCCT+AGG | 0.522643 | 7.1:+17250251 | None:intergenic |
| GATGACTCTTCTCTACGAAC+GGG | 0.523910 | 7.1:-17251391 | MS.gene38769:CDS |
| AGGGTCTTCTACATCATGGC+TGG | 0.525907 | 7.1:+17250022 | None:intergenic |
| AACCGGTTGTCTTCTACAAG+TGG | 0.530917 | 7.1:+17249920 | None:intergenic |
| TTAGTACATTTGATTATGCA+TGG | 0.537544 | 7.1:-17250511 | MS.gene38769:CDS |
| AAAGGTGCCAGGAACATAAA+GGG | 0.538956 | 7.1:-17249887 | MS.gene38769:CDS |
| ACCTTTCACCCAGAGGAAAG+TGG | 0.539145 | 7.1:-17250384 | MS.gene38769:CDS |
| CAGCTGAGATTCTGTTCTCA+GGG | 0.541120 | 7.1:+17250535 | None:intergenic |
| CCTTTCACCCAGAGGAAAGT+GGG | 0.542001 | 7.1:-17250383 | MS.gene38769:CDS |
| ATGATTCTAGCTTCTCCCAC+TGG | 0.543441 | 7.1:-17252405 | MS.gene38769:CDS |
| ACTCCAAGCTCGTACACCCC+CGG | 0.547377 | 7.1:+17251571 | None:intergenic |
| TTAATTTGAACACACGGGAT+AGG | 0.547956 | 7.1:+17250285 | None:intergenic |
| TGTGGAATCATCTTGGATGA+TGG | 0.551166 | 7.1:-17249945 | MS.gene38769:CDS |
| CAAGACTCCAGCGTTATGGC+AGG | 0.554748 | 7.1:-17251447 | MS.gene38769:CDS |
| CTCCATTCCTGCCATAACGC+TGG | 0.555122 | 7.1:+17251440 | None:intergenic |
| GCTGTGTCGCGTAGTAATCT+GGG | 0.557788 | 7.1:-17251547 | MS.gene38769:CDS |
| TTCCTCAGAAATTGGGTCCG+GGG | 0.559029 | 7.1:-17251588 | MS.gene38769:CDS |
| TAAAATTTGCGGAGTGATGT+TGG | 0.559942 | 7.1:-17250201 | MS.gene38769:CDS |
| GTTAAGAGTCATGTTGATGA+GGG | 0.562383 | 7.1:-17249987 | MS.gene38769:CDS |
| TTCTAGCTTCTCCCACTGGA+AGG | 0.570084 | 7.1:-17252401 | MS.gene38769:intron |
| GAATAGTCTTCCCAATCAGA+AGG | 0.574116 | 7.1:+17251652 | None:intergenic |
| TGACCCTCATCGCATAGTTG+TGG | 0.574795 | 7.1:-17251500 | MS.gene38769:CDS |
| GGTTAAGAGTCATGTTGATG+AGG | 0.575589 | 7.1:-17249988 | MS.gene38769:CDS |
| CCGGACCCAATTTCTGAGGA+AGG | 0.577737 | 7.1:+17251590 | None:intergenic |
| GGTCGTCAACAGATTGAAGC+GGG | 0.577925 | 7.1:-17252449 | MS.gene38769:CDS |
| AGATGACTCTTCTCTACGAA+CGG | 0.578063 | 7.1:-17251392 | MS.gene38769:CDS |
| TCCTCAGAAATTGGGTCCGG+GGG | 0.579255 | 7.1:-17251587 | MS.gene38769:CDS |
| TGCGGAGTGATGTTGGCCGA+TGG | 0.582561 | 7.1:-17250194 | MS.gene38769:CDS |
| CCTGTTTAATTTGAACACAC+GGG | 0.590009 | 7.1:+17250280 | None:intergenic |
| AACTATGCGATGAGGGTCAG+TGG | 0.590571 | 7.1:+17251504 | None:intergenic |
| AGGATAGTTCAGGATACCAC+TGG | 0.597133 | 7.1:-17250248 | MS.gene38769:CDS |
| TGATCTGATTGCTTTGGCGG+CGG | 0.601310 | 7.1:+17250097 | None:intergenic |
| TCCAGTTTGTCATCTGTCAG+AGG | 0.601705 | 7.1:+17250335 | None:intergenic |
| TGCTTCTACCTTTCACCCAG+AGG | 0.610412 | 7.1:-17250391 | MS.gene38769:CDS |
| GACTATTCCAAAGAAAAGGA+AGG | 0.610651 | 7.1:-17251637 | MS.gene38769:CDS |
| ATCGCCAAAACCATTATGTG+TGG | 0.621653 | 7.1:-17249963 | MS.gene38769:CDS |
| AAACCACAACTATGCGATGA+GGG | 0.622038 | 7.1:+17251497 | None:intergenic |
| ACACAATCAGCAATGGTACA+CGG | 0.633965 | 7.1:-17250487 | MS.gene38769:CDS |
| GCATGGAACACAATCAGCAA+TGG | 0.645734 | 7.1:-17250494 | MS.gene38769:CDS |
| TGGTCGTCAACAGATTGAAG+CGG | 0.649124 | 7.1:-17252450 | MS.gene38769:CDS |
| TATTGAACAGATGCAAAACG+AGG | 0.650690 | 7.1:-17250564 | MS.gene38769:intron |
| AATTGATATGAACCTTCCAG+TGG | 0.655241 | 7.1:+17252389 | None:intergenic |
| ATTGATATGAACCTTCCAGT+GGG | 0.662855 | 7.1:+17252390 | None:intergenic |
| ATGAGTGGCACTACCACCAG+TGG | 0.671537 | 7.1:+17250232 | None:intergenic |
| ACTCTTCTCTACGAACGGGA+AGG | 0.673197 | 7.1:-17251387 | MS.gene38769:CDS |
| TAAACCACAACTATGCGATG+AGG | 0.681351 | 7.1:+17251496 | None:intergenic |
| CTTTCACCCAGAGGAAAGTG+GGG | 0.681368 | 7.1:-17250382 | MS.gene38769:CDS |
| ATTGAACAGATGCAAAACGA+GGG | 0.682609 | 7.1:-17250563 | MS.gene38769:intron |
| ATAGTTCAGGATACCACTGG+TGG | 0.705856 | 7.1:-17250245 | MS.gene38769:CDS |
| GTGAGGTGTCCTGAACACAA+AGG | 0.719035 | 7.1:-17250137 | MS.gene38769:CDS |
| GGTGCCAGGAACATAAAGGG+AGG | 0.732457 | 7.1:-17249884 | MS.gene38769:CDS |
| AAACTGGATGAAGCTGACAG+TGG | 0.772229 | 7.1:-17250320 | MS.gene38769:CDS |
| CAATCAGCAATGGTACACGG+AGG | 0.803408 | 7.1:-17250484 | MS.gene38769:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTTTATTTGGTTAT+TGG | - | chr7.1:17250253-17250272 | MS.gene38769:CDS | 10.0% |
| !!! | GAACAAGATATTTTTTTATT+TGG | - | chr7.1:17250246-17250265 | MS.gene38769:CDS | 15.0% |
| !!! | TATATAAAAGTGCAATTTTT+TGG | - | chr7.1:17251690-17251709 | MS.gene38769:intron | 15.0% |
| !! | TTGTTAACTTCACTATAATA+TGG | + | chr7.1:17250496-17250515 | None:intergenic | 20.0% |
| !!! | AAATTGAAAGCTTTAAAAAG+TGG | + | chr7.1:17250141-17250160 | None:intergenic | 20.0% |
| !!! | TTCCATTTAGATAATTTTCT+GGG | - | chr7.1:17250112-17250131 | MS.gene38769:CDS | 20.0% |
| ! | AAGTGACACAATCAAAATTT+AGG | - | chr7.1:17251495-17251514 | MS.gene38769:CDS | 25.0% |
| ! | AATATCAGATATGTACTTAC+AGG | + | chr7.1:17251001-17251020 | None:intergenic | 25.0% |
| ! | ACCTAAATTACATAGATTTC+AGG | + | chr7.1:17251261-17251280 | None:intergenic | 25.0% |
| ! | ACGTTATCATATGATAGTAT+AGG | - | chr7.1:17251153-17251172 | MS.gene38769:intron | 25.0% |
| ! | CAAAATCTACTGTTAATATG+TGG | - | chr7.1:17251614-17251633 | MS.gene38769:CDS | 25.0% |
| ! | CAGAAAATTATCTAAATGGA+AGG | + | chr7.1:17250113-17250132 | None:intergenic | 25.0% |
| ! | CGTTATCATATGATAGTATA+GGG | - | chr7.1:17251154-17251173 | MS.gene38769:intron | 25.0% |
| ! | GAATTATCATAATAGACTAG+TGG | + | chr7.1:17251558-17251577 | None:intergenic | 25.0% |
| ! | GTTTCAAAAAAGTCATTGAT+TGG | - | chr7.1:17251124-17251143 | MS.gene38769:intron | 25.0% |
| ! | TTAGTACATTTGATTATGCA+TGG | - | chr7.1:17251797-17251816 | MS.gene38769:intron | 25.0% |
| !! | AACCCAATTCCATTTTAAAT+GGG | - | chr7.1:17251402-17251421 | MS.gene38769:CDS | 25.0% |
| !! | AACTGTTTTCAGATTCTTAT+CGG | - | chr7.1:17250632-17250651 | MS.gene38769:intron | 25.0% |
| !! | CACTAAAAGAATGAAGTATT+AGG | + | chr7.1:17250069-17250088 | None:intergenic | 25.0% |
| !! | CTTCCATTTAGATAATTTTC+TGG | - | chr7.1:17250111-17250130 | MS.gene38769:CDS | 25.0% |
| !! | TAACCCAATTCCATTTTAAA+TGG | - | chr7.1:17251401-17251420 | MS.gene38769:CDS | 25.0% |
| !! | TAGTTTTCGTCATTCTATTA+TGG | + | chr7.1:17250552-17250571 | None:intergenic | 25.0% |
| !!! | AATTTTGATTGTGTCACTTT+TGG | + | chr7.1:17251494-17251513 | None:intergenic | 25.0% |
| !!! | GCAATTTTTTGGAACTATAA+TGG | - | chr7.1:17251701-17251720 | MS.gene38769:intron | 25.0% |
| AAAACTGGACCCATTTAAAA+TGG | + | chr7.1:17251414-17251433 | None:intergenic | 30.0% | |
| AATGCTTTCTAATTCTGACT+TGG | + | chr7.1:17252238-17252257 | None:intergenic | 30.0% | |
| AATTAGCAGTGCTCATTTAA+AGG | - | chr7.1:17251235-17251254 | MS.gene38769:intron | 30.0% | |
| AATTCATAGCTTAAGAATGG+AGG | + | chr7.1:17251219-17251238 | None:intergenic | 30.0% | |
| ACTTCCCAATTGTTTATAGA+TGG | - | chr7.1:17250972-17250991 | MS.gene38769:intron | 30.0% | |
| AGCATTTGAAGAATATCATC+AGG | + | chr7.1:17251850-17251869 | None:intergenic | 30.0% | |
| AGCCCAGAAAATTATCTAAA+TGG | + | chr7.1:17250117-17250136 | None:intergenic | 30.0% | |
| ATGCTTTCTAATTCTGACTT+GGG | + | chr7.1:17252237-17252256 | None:intergenic | 30.0% | |
| CATGAGAATGCTAAAATTTG+CGG | - | chr7.1:17252096-17252115 | MS.gene38769:intron | 30.0% | |
| CTCAAATAAACACACATACA+CGG | - | chr7.1:17250294-17250313 | MS.gene38769:CDS | 30.0% | |
| CTTCCCAATTGTTTATAGAT+GGG | - | chr7.1:17250973-17250992 | MS.gene38769:intron | 30.0% | |
| GCAACTGAACATGTATTAAT+GGG | - | chr7.1:17251055-17251074 | MS.gene38769:intron | 30.0% | |
| GCCTGAAATCTATGTAATTT+AGG | - | chr7.1:17251257-17251276 | MS.gene38769:intron | 30.0% | |
| GCTAATTCATAGCTTAAGAA+TGG | + | chr7.1:17251222-17251241 | None:intergenic | 30.0% | |
| TAGTATAGGGTATAACTCAA+AGG | - | chr7.1:17251167-17251186 | MS.gene38769:intron | 30.0% | |
| TCAAATAAACACACATACAC+GGG | - | chr7.1:17250295-17250314 | MS.gene38769:CDS | 30.0% | |
| TGCAACTGAACATGTATTAA+TGG | - | chr7.1:17251054-17251073 | MS.gene38769:intron | 30.0% | |
| TTCTTTCAACTGTACAAATC+TGG | - | chr7.1:17250573-17250592 | MS.gene38769:intron | 30.0% | |
| ! | AAAAGCTATTGACTGTATGA+TGG | - | chr7.1:17250173-17250192 | MS.gene38769:CDS | 30.0% |
| ! | CAAAATTTAGGACAAGGTTA+GGG | - | chr7.1:17251507-17251526 | MS.gene38769:CDS | 30.0% |
| ! | CACAATCAAAATTTAGGACA+AGG | - | chr7.1:17251501-17251520 | MS.gene38769:CDS | 30.0% |
| ! | CCTTTTACAAATAGAACCAT+CGG | + | chr7.1:17252133-17252152 | None:intergenic | 30.0% |
| ! | GAAGTATTAGGCTTTACTTT+AGG | + | chr7.1:17250057-17250076 | None:intergenic | 30.0% |
| ! | GACCCATTTAAAATGGAATT+GGG | + | chr7.1:17251407-17251426 | None:intergenic | 30.0% |
| ! | TCAAAATTTAGGACAAGGTT+AGG | - | chr7.1:17251506-17251525 | MS.gene38769:CDS | 30.0% |
| ! | TTAATGTTTCTACGATTCTG+TGG | - | chr7.1:17249991-17250010 | MS.gene38769:CDS | 30.0% |
| !! | AATTTTAGCATTCTCATGAG+TGG | + | chr7.1:17252094-17252113 | None:intergenic | 30.0% |
| !! | ACCTGTTTAATTTGAACACA+CGG | + | chr7.1:17252032-17252051 | None:intergenic | 30.0% |
| !! | AGCTAGAATCATGTTTTGTT+CGG | + | chr7.1:17249895-17249914 | None:intergenic | 30.0% |
| !! | TCAGAATTAGAAAGCATTGT+AGG | - | chr7.1:17252240-17252259 | MS.gene38769:intron | 30.0% |
| !! | TGAACATGTATTAATGGGTT+TGG | - | chr7.1:17251060-17251079 | MS.gene38769:intron | 30.0% |
| !! | TTCAGTTCTAGAGATATGTT+AGG | - | chr7.1:17251466-17251485 | MS.gene38769:CDS | 30.0% |
| AACCGGTTAAAGGAAGAAAA+AGG | - | chr7.1:17252403-17252422 | MS.gene38769:CDS | 35.0% | |
| AATTGATATGAACCTTCCAG+TGG | + | chr7.1:17249922-17249941 | None:intergenic | 35.0% | |
| ATTCTCATTCCTTTGTGTTC+AGG | + | chr7.1:17252183-17252202 | None:intergenic | 35.0% | |
| ATTGAACAGATGCAAAACGA+GGG | - | chr7.1:17251745-17251764 | MS.gene38769:intron | 35.0% | |
| ATTGATATGAACCTTCCAGT+GGG | + | chr7.1:17249921-17249940 | None:intergenic | 35.0% | |
| CAAATAAACACACATACACG+GGG | - | chr7.1:17250296-17250315 | MS.gene38769:CDS | 35.0% | |
| CAAGATGATTCCACACATAA+TGG | + | chr7.1:17252358-17252377 | None:intergenic | 35.0% | |
| CATTATGTGTGGAATCATCT+TGG | - | chr7.1:17252356-17252375 | MS.gene38769:intron | 35.0% | |
| GACTATTCCAAAGAAAAGGA+AGG | - | chr7.1:17250671-17250690 | MS.gene38769:intron | 35.0% | |
| GAGCCCATCTATAAACAATT+GGG | + | chr7.1:17250979-17250998 | None:intergenic | 35.0% | |
| GCATTGTAGGTAATGCTTAT+AGG | - | chr7.1:17252253-17252272 | MS.gene38769:intron | 35.0% | |
| GGAAGACTATTCCAAAGAAA+AGG | - | chr7.1:17250667-17250686 | MS.gene38769:intron | 35.0% | |
| GTGTTTATTTGAGCATGTGT+TGG | + | chr7.1:17250287-17250306 | None:intergenic | 35.0% | |
| TAAAATTTGCGGAGTGATGT+TGG | - | chr7.1:17252107-17252126 | MS.gene38769:intron | 35.0% | |
| TATTGAACAGATGCAAAACG+AGG | - | chr7.1:17251744-17251763 | MS.gene38769:intron | 35.0% | |
| TCTATACCTAATGTCTCTGA+TGG | - | chr7.1:17251587-17251606 | MS.gene38769:CDS | 35.0% | |
| TCTTAACCATTCTTTGTGGA+GGG | + | chr7.1:17252308-17252327 | None:intergenic | 35.0% | |
| TGAATTCCATCAGAGACATT+AGG | + | chr7.1:17251596-17251615 | None:intergenic | 35.0% | |
| TGACTCTTAACCATTCTTTG+TGG | + | chr7.1:17252312-17252331 | None:intergenic | 35.0% | |
| TGGCAAGCTTGTAAATTTCA+CGG | + | chr7.1:17250787-17250806 | None:intergenic | 35.0% | |
| TTCTATTTGTAAAAGGCCAC+CGG | - | chr7.1:17252137-17252156 | MS.gene38769:intron | 35.0% | |
| ! | ACTATTAGCTTCAGCATCTT+AGG | - | chr7.1:17251098-17251117 | MS.gene38769:intron | 35.0% |
| ! | AGGGTATAACTCAAAGGTTT+TGG | - | chr7.1:17251173-17251192 | MS.gene38769:intron | 35.0% |
| ! | ATGCTCAACAAATTAGCTTC+AGG | - | chr7.1:17251865-17251884 | MS.gene38769:intron | 35.0% |
| ! | CACCTTTTTCTTCCTTTAAC+CGG | + | chr7.1:17252408-17252427 | None:intergenic | 35.0% |
| ! | CACTAGAACATTTTCAGATG+TGG | - | chr7.1:17251888-17251907 | MS.gene38769:intron | 35.0% |
| ! | CCGATGGTTCTATTTGTAAA+AGG | - | chr7.1:17252130-17252149 | MS.gene38769:intron | 35.0% |
| ! | GATTCCACACATAATGGTTT+TGG | + | chr7.1:17252352-17252371 | None:intergenic | 35.0% |
| ! | GGACCCATTTAAAATGGAAT+TGG | + | chr7.1:17251408-17251427 | None:intergenic | 35.0% |
| ! | GTGTCGCATTTTACGAAATT+TGG | - | chr7.1:17251636-17251655 | MS.gene38769:CDS | 35.0% |
| ! | GTTAAGAGTCATGTTGATGA+GGG | - | chr7.1:17252321-17252340 | MS.gene38769:intron | 35.0% |
| ! | TTAATTTGAACACACGGGAT+AGG | + | chr7.1:17252026-17252045 | None:intergenic | 35.0% |
| !! | CCTGTTTAATTTGAACACAC+GGG | + | chr7.1:17252031-17252050 | None:intergenic | 35.0% |
| AAACCACAACTATGCGATGA+GGG | + | chr7.1:17250814-17250833 | None:intergenic | 40.0% | |
| AAGGTTGTGAATCCTGTATC+TGG | + | chr7.1:17250702-17250721 | None:intergenic | 40.0% | |
| AATTAAACAGGTCACGTCCT+AGG | - | chr7.1:17252040-17252059 | MS.gene38769:intron | 40.0% | |
| ACACAATCAGCAATGGTACA+CGG | - | chr7.1:17251821-17251840 | MS.gene38769:intron | 40.0% | |
| ACCACTAGACTCTAATAGCA+AGG | - | chr7.1:17250382-17250401 | MS.gene38769:CDS | 40.0% | |
| AGATGACTCTTCTCTACGAA+CGG | - | chr7.1:17250916-17250935 | MS.gene38769:intron | 40.0% | |
| ATCCACTTGTAGAAGACAAC+CGG | - | chr7.1:17252386-17252405 | MS.gene38769:intron | 40.0% | |
| ATCGCCAAAACCATTATGTG+TGG | - | chr7.1:17252345-17252364 | MS.gene38769:intron | 40.0% | |
| ATCTGGTTACCTTCTTACCT+TGG | - | chr7.1:17250590-17250609 | MS.gene38769:intron | 40.0% | |
| CACAACCTTCCTCAGAAATT+GGG | - | chr7.1:17250713-17250732 | MS.gene38769:intron | 40.0% | |
| CCCGTGTGTTCAAATTAAAC+AGG | - | chr7.1:17252028-17252047 | MS.gene38769:intron | 40.0% | |
| CTCTTAACCATTCTTTGTGG+AGG | + | chr7.1:17252309-17252328 | None:intergenic | 40.0% | |
| GAATAGTCTTCCCAATCAGA+AGG | + | chr7.1:17250659-17250678 | None:intergenic | 40.0% | |
| GCTATTAGAGTCTAGTGGTT+TGG | + | chr7.1:17250381-17250400 | None:intergenic | 40.0% | |
| GGAGCCCATCTATAAACAAT+TGG | + | chr7.1:17250980-17250999 | None:intergenic | 40.0% | |
| GGTGAAAGGTAGAAGCAATT+TGG | + | chr7.1:17251914-17251933 | None:intergenic | 40.0% | |
| GGTTAAGAGTCATGTTGATG+AGG | - | chr7.1:17252320-17252339 | MS.gene38769:intron | 40.0% | |
| GTTACCTTCTTACCTTGGTT+TGG | - | chr7.1:17250595-17250614 | MS.gene38769:intron | 40.0% | |
| TAAACCACAACTATGCGATG+AGG | + | chr7.1:17250815-17250834 | None:intergenic | 40.0% | |
| TCACAACCTTCCTCAGAAAT+TGG | - | chr7.1:17250712-17250731 | MS.gene38769:intron | 40.0% | |
| TCTTATCGGTCCTTCTGATT+GGG | - | chr7.1:17250646-17250665 | MS.gene38769:intron | 40.0% | |
| TGTAGAAGACAACCGGTTAA+AGG | - | chr7.1:17252393-17252412 | MS.gene38769:intron | 40.0% | |
| TGTGGAATCATCTTGGATGA+TGG | - | chr7.1:17252363-17252382 | MS.gene38769:intron | 40.0% | |
| TTATTTGGTTATTGGCCCAG+TGG | - | chr7.1:17250261-17250280 | MS.gene38769:CDS | 40.0% | |
| TTCTTATCGGTCCTTCTGAT+TGG | - | chr7.1:17250645-17250664 | MS.gene38769:intron | 40.0% | |
| ! | AAATGGGTCCAGTTTTGCTT+TGG | - | chr7.1:17251418-17251437 | MS.gene38769:CDS | 40.0% |
| ! | GGCAGCTTGCTTGATTTAAT+TGG | + | chr7.1:17251955-17251974 | None:intergenic | 40.0% |
| ! | GGTAGATCCTTCCTTTTCTT+TGG | + | chr7.1:17250681-17250700 | None:intergenic | 40.0% |
| ! | TCACATTGTCAGCTTTTCCA+AGG | + | chr7.1:17250838-17250857 | None:intergenic | 40.0% |
| !! | AAAAGGTGCCAGGAACATAA+AGG | - | chr7.1:17252420-17252439 | MS.gene38769:CDS | 40.0% |
| !! | AAAGGTGCCAGGAACATAAA+GGG | - | chr7.1:17252421-17252440 | MS.gene38769:CDS | 40.0% |
| !! | TAAAGGAAGAAAAAGGTGCC+AGG | - | chr7.1:17252410-17252429 | MS.gene38769:CDS | 40.0% |
| !! | TCCTTGCTATTAGAGTCTAG+TGG | + | chr7.1:17250386-17250405 | None:intergenic | 40.0% |
| !!! | CACCTCACTCTTTTTTCAAC+CGG | + | chr7.1:17252159-17252178 | None:intergenic | 40.0% |
| AAACTGGATGAAGCTGACAG+TGG | - | chr7.1:17251988-17252007 | MS.gene38769:intron | 45.0% | |
| AACCCAATACACAGCACTTC+AGG | + | chr7.1:17251444-17251463 | None:intergenic | 45.0% | |
| AACCGGTTGTCTTCTACAAG+TGG | + | chr7.1:17252391-17252410 | None:intergenic | 45.0% | |
| AACGGGAAGGTCATTGTTTC+AGG | - | chr7.1:17250934-17250953 | MS.gene38769:intron | 45.0% | |
| ACTTCAGGCCAAAGCAAAAC+TGG | + | chr7.1:17251429-17251448 | None:intergenic | 45.0% | |
| AGAAGACCCTCCACAAAGAA+TGG | - | chr7.1:17252299-17252318 | MS.gene38769:intron | 45.0% | |
| AGGAAGGATCTACCAGATAC+AGG | - | chr7.1:17250687-17250706 | MS.gene38769:intron | 45.0% | |
| AGGATAGTTCAGGATACCAC+TGG | - | chr7.1:17252060-17252079 | MS.gene38769:intron | 45.0% | |
| ATAAACACACATACACGGGG+AGG | - | chr7.1:17250299-17250318 | MS.gene38769:CDS | 45.0% | |
| ATAGTTCAGGATACCACTGG+TGG | - | chr7.1:17252063-17252082 | MS.gene38769:intron | 45.0% | |
| CAGCTGAGATTCTGTTCTCA+GGG | + | chr7.1:17251776-17251795 | None:intergenic | 45.0% | |
| CGCATAGTTGTGGTTTACCT+TGG | - | chr7.1:17250818-17250837 | MS.gene38769:intron | 45.0% | |
| CTTGGGTGATCTGATTGCTT+TGG | + | chr7.1:17252220-17252239 | None:intergenic | 45.0% | |
| GATGACTCTTCTCTACGAAC+GGG | - | chr7.1:17250917-17250936 | MS.gene38769:intron | 45.0% | |
| GCAACCAAACCAAGGTAAGA+AGG | + | chr7.1:17250602-17250621 | None:intergenic | 45.0% | |
| GCATGGAACACAATCAGCAA+TGG | - | chr7.1:17251814-17251833 | MS.gene38769:intron | 45.0% | |
| GGCTTTACTTTAGGCATCAC+TGG | + | chr7.1:17250048-17250067 | None:intergenic | 45.0% | |
| GTGGTATCCTGAACTATCCT+AGG | + | chr7.1:17252060-17252079 | None:intergenic | 45.0% | |
| TAAACACACATACACGGGGA+GGG | - | chr7.1:17250300-17250319 | MS.gene38769:CDS | 45.0% | |
| TAACACGAGCAACCAAACCA+AGG | + | chr7.1:17250610-17250629 | None:intergenic | 45.0% | |
| TCCAGTTTGTCATCTGTCAG+AGG | + | chr7.1:17251976-17251995 | None:intergenic | 45.0% | |
| TGGTCGTCAACAGATTGAAG+CGG | - | chr7.1:17249858-17249877 | MS.gene38769:CDS | 45.0% | |
| TTCTCCTCCCTTTATGTTCC+TGG | + | chr7.1:17252431-17252450 | None:intergenic | 45.0% | |
| ! | CACCGGTTGAAAAAAGAGTG+AGG | - | chr7.1:17252154-17252173 | MS.gene38769:intron | 45.0% |
| ! | CTACATCATGGCTGGCATTT+TGG | + | chr7.1:17252281-17252300 | None:intergenic | 45.0% |
| ! | GACATTTTACGTGGAATCCC+AGG | + | chr7.1:17250351-17250370 | None:intergenic | 45.0% |
| ! | TGATGGCGTAGTGCTTAAAG+AGG | - | chr7.1:17250190-17250209 | MS.gene38769:CDS | 45.0% |
| !! | AGTCTAGTGGTTTGGCTTTG+AGG | + | chr7.1:17250373-17250392 | None:intergenic | 45.0% |
| !! | ATGATTCTAGCTTCTCCCAC+TGG | - | chr7.1:17249903-17249922 | MS.gene38769:CDS | 45.0% |
| !!! | CTCACTCTTTTTTCAACCGG+TGG | + | chr7.1:17252156-17252175 | None:intergenic | 45.0% |
| !!! | GGCTTTGAGGACATTTTACG+TGG | + | chr7.1:17250360-17250379 | None:intergenic | 45.0% |
| AAACACACATACACGGGGAG+GGG | - | chr7.1:17250301-17250320 | MS.gene38769:CDS | 50.0% | |
| AACTATGCGATGAGGGTCAG+TGG | + | chr7.1:17250807-17250826 | None:intergenic | 50.0% | |
| ACCTTTCACCCAGAGGAAAG+TGG | - | chr7.1:17251924-17251943 | MS.gene38769:intron | 50.0% | |
| ACTAGTGGCAAGCAAGAGAC+GGG | + | chr7.1:17251543-17251562 | None:intergenic | 50.0% | |
| ACTCTTCTCTACGAACGGGA+AGG | - | chr7.1:17250921-17250940 | MS.gene38769:intron | 50.0% | |
| AGAGCAAGACTCCAGCGTTA+TGG | - | chr7.1:17250857-17250876 | MS.gene38769:intron | 50.0% | |
| AGCTGTGTCGCGTAGTAATC+TGG | - | chr7.1:17250760-17250779 | MS.gene38769:intron | 50.0% | |
| AGGGTCTTCTACATCATGGC+TGG | + | chr7.1:17252289-17252308 | None:intergenic | 50.0% | |
| CAATCAGCAATGGTACACGG+AGG | - | chr7.1:17251824-17251843 | MS.gene38769:intron | 50.0% | |
| CCTTCCTCAGAAATTGGGTC+CGG | - | chr7.1:17250718-17250737 | MS.gene38769:intron | 50.0% | |
| CCTTTCACCCAGAGGAAAGT+GGG | - | chr7.1:17251925-17251944 | MS.gene38769:intron | 50.0% | |
| CTTCCTCAGAAATTGGGTCC+GGG | - | chr7.1:17250719-17250738 | MS.gene38769:intron | 50.0% | |
| CTTTCACCCAGAGGAAAGTG+GGG | - | chr7.1:17251926-17251945 | MS.gene38769:intron | 50.0% | |
| GACTAGTGGCAAGCAAGAGA+CGG | + | chr7.1:17251544-17251563 | None:intergenic | 50.0% | |
| GCAGCTGAGATTCTGTTCTC+AGG | + | chr7.1:17251777-17251796 | None:intergenic | 50.0% | |
| GCCTCTGACAGATGACAAAC+TGG | - | chr7.1:17251972-17251991 | MS.gene38769:intron | 50.0% | |
| GCTGTGTCGCGTAGTAATCT+GGG | - | chr7.1:17250761-17250780 | MS.gene38769:intron | 50.0% | |
| GGGTGATCTGATTGCTTTGG+CGG | + | chr7.1:17252217-17252236 | None:intergenic | 50.0% | |
| GGTCGTCAACAGATTGAAGC+GGG | - | chr7.1:17249859-17249878 | MS.gene38769:CDS | 50.0% | |
| GTCACGTCCTAGGATAGTTC+AGG | - | chr7.1:17252050-17252069 | MS.gene38769:intron | 50.0% | |
| GTGGAGGGTCTTCTACATCA+TGG | + | chr7.1:17252293-17252312 | None:intergenic | 50.0% | |
| TGACCCTCATCGCATAGTTG+TGG | - | chr7.1:17250808-17250827 | MS.gene38769:intron | 50.0% | |
| TGATCTGATTGCTTTGGCGG+CGG | + | chr7.1:17252214-17252233 | None:intergenic | 50.0% | |
| TGCTTCTACCTTTCACCCAG+AGG | - | chr7.1:17251917-17251936 | MS.gene38769:intron | 50.0% | |
| TGGAATCCCAGGTTTGATCC+CGG | + | chr7.1:17250340-17250359 | None:intergenic | 50.0% | |
| TGGTATCCCCACTTTCCTCT+GGG | + | chr7.1:17251935-17251954 | None:intergenic | 50.0% | |
| TTCCTCAGAAATTGGGTCCG+GGG | - | chr7.1:17250720-17250739 | MS.gene38769:intron | 50.0% | |
| TTGGTATCCCCACTTTCCTC+TGG | + | chr7.1:17251936-17251955 | None:intergenic | 50.0% | |
| ! | GTGAGGTGTCCTGAACACAA+AGG | - | chr7.1:17252171-17252190 | MS.gene38769:intron | 50.0% |
| ! | TTGAGCATGTGTTGGCCACT+GGG | + | chr7.1:17250279-17250298 | None:intergenic | 50.0% |
| ! | TTTGAGCATGTGTTGGCCAC+TGG | + | chr7.1:17250280-17250299 | None:intergenic | 50.0% |
| !! | GGCCTGAAGTGCTGTGTATT+GGG | - | chr7.1:17251439-17251458 | MS.gene38769:CDS | 50.0% |
| !! | TGGCCTGAAGTGCTGTGTAT+TGG | - | chr7.1:17251438-17251457 | MS.gene38769:CDS | 50.0% |
| !! | TTCTAGCTTCTCCCACTGGA+AGG | - | chr7.1:17249907-17249926 | MS.gene38769:CDS | 50.0% |
| AACACACATACACGGGGAGG+GGG | - | chr7.1:17250302-17250321 | MS.gene38769:CDS | 55.0% | |
| ATGAGTGGCACTACCACCAG+TGG | + | chr7.1:17252079-17252098 | None:intergenic | 55.0% | |
| CAAGACTCCAGCGTTATGGC+AGG | - | chr7.1:17250861-17250880 | MS.gene38769:intron | 55.0% | |
| CCCACTTTCCTCTGGGTGAA+AGG | + | chr7.1:17251928-17251947 | None:intergenic | 55.0% | |
| CTCCAGCGTTATGGCAGGAA+TGG | - | chr7.1:17250866-17250885 | MS.gene38769:intron | 55.0% | |
| CTCCATTCCTGCCATAACGC+TGG | + | chr7.1:17250871-17250890 | None:intergenic | 55.0% | |
| GGAATCCCAGGTTTGATCCC+GGG | + | chr7.1:17250339-17250358 | None:intergenic | 55.0% | |
| GGTGCCAGGAACATAAAGGG+AGG | - | chr7.1:17252424-17252443 | MS.gene38769:CDS | 55.0% | |
| GTTGACCCGGGATCAAACCT+GGG | - | chr7.1:17250331-17250350 | MS.gene38769:CDS | 55.0% | |
| TCCTCAGAAATTGGGTCCGG+GGG | - | chr7.1:17250721-17250740 | MS.gene38769:intron | 55.0% | |
| TGTTGACCCGGGATCAAACC+TGG | - | chr7.1:17250330-17250349 | MS.gene38769:CDS | 55.0% | |
| ! | CCGGACCCAATTTCTGAGGA+AGG | + | chr7.1:17250721-17250740 | None:intergenic | 55.0% |
| ACCCCCGGACCCAATTTCTG+AGG | + | chr7.1:17250725-17250744 | None:intergenic | 60.0% | |
| ACTCCAAGCTCGTACACCCC+CGG | + | chr7.1:17250740-17250759 | None:intergenic | 60.0% | |
| TGCGGAGTGATGTTGGCCGA+TGG | - | chr7.1:17252114-17252133 | MS.gene38769:intron | 60.0% | |
| ! | AGGGGGAAGTGTGTTGACCC+GGG | - | chr7.1:17250319-17250338 | MS.gene38769:CDS | 60.0% |
| ! | GAGGGGGAAGTGTGTTGACC+CGG | - | chr7.1:17250318-17250337 | MS.gene38769:CDS | 60.0% |
| ! | GGTCCGGGGGTGTACGAGCT+TGG | - | chr7.1:17250734-17250753 | MS.gene38769:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 17249857 | 17252473 | 17249857 | ID=MS.gene38769 |
| chr7.1 | mRNA | 17249857 | 17252473 | 17249857 | ID=MS.gene38769.t1;Parent=MS.gene38769 |
| chr7.1 | exon | 17252402 | 17252473 | 17252402 | ID=MS.gene38769.t1.exon1;Parent=MS.gene38769.t1 |
| chr7.1 | CDS | 17252402 | 17252473 | 17252402 | ID=cds.MS.gene38769.t1;Parent=MS.gene38769.t1 |
| chr7.1 | exon | 17251330 | 17251686 | 17251330 | ID=MS.gene38769.t1.exon2;Parent=MS.gene38769.t1 |
| chr7.1 | CDS | 17251330 | 17251686 | 17251330 | ID=cds.MS.gene38769.t1;Parent=MS.gene38769.t1 |
| chr7.1 | exon | 17249857 | 17250576 | 17249857 | ID=MS.gene38769.t1.exon3;Parent=MS.gene38769.t1 |
| chr7.1 | CDS | 17249857 | 17250576 | 17249857 | ID=cds.MS.gene38769.t1;Parent=MS.gene38769.t1 |
| Gene Sequence |
| Protein sequence |
