AlfalfaGEDB | MS.gene38769

M. sativa cultivar XinJiangDaYe / MS.gene38769

KEGG: -
GO: -
PFAM: PF19239.2

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38769.t1	XP_003625016.2	94.5	379	21	0	1	379	1	379	1.00E-206	729.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38769.t1	F4K933	41.9	382	183	8	7	378	17	369	5.1e-74	279.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38769.t1	G7KQU4	94.5	379	21	0	1	379	1	379	7.3e-207	729.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene38769.t1	TF	HRT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38769.t1	MTR_7g090060	94.459	379	21	0	1	379	1	379	0.0	744
MS.gene38769.t1	MTR_6g092520	73.995	373	86	3	6	378	2	363	0.0	554
MS.gene38769.t1	MTR_6g092500	61.062	113	39	1	3	115	46	153	3.42e-42	145
MS.gene38769.t1	MTR_6g092480	43.902	123	43	1	125	247	9	105	7.71e-25	106
MS.gene38769.t1	MTR_6g092480	65.909	44	15	0	270	313	311	354	1.91e-11	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38769.t1	AT5G56780	41.753	388	187	9	1	378	11	369	4.98e-90	280
MS.gene38769.t1	AT5G56770	41.954	174	77	4	2	174	51	201	1.23e-34	128

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Find 109 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTGCCAGGAACATAA+AGG	0.395561	7.1:-17249888	MS.gene38769:CDS
AAACCACAACTATGCGATGA+GGG	0.622038	7.1:+17251497	None:intergenic
AAACTGGATGAAGCTGACAG+TGG	0.772229	7.1:-17250320	MS.gene38769:CDS
AAAGGTGCCAGGAACATAAA+GGG	0.538956	7.1:-17249887	MS.gene38769:CDS
AACCGGTTAAAGGAAGAAAA+AGG	0.410668	7.1:-17249905	MS.gene38769:CDS
AACCGGTTGTCTTCTACAAG+TGG	0.530917	7.1:+17249920	None:intergenic
AACGGGAAGGTCATTGTTTC+AGG	0.214002	7.1:-17251374	MS.gene38769:CDS
AACTATGCGATGAGGGTCAG+TGG	0.590571	7.1:+17251504	None:intergenic
AAGGTTGTGAATCCTGTATC+TGG	0.479106	7.1:+17251609	None:intergenic
AATGCTTTCTAATTCTGACT+TGG	0.501548	7.1:+17250073	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTGGACCCATTTAAAA+TGG	+	chr7.1:17251414-17251433	None:intergenic	30.0%
AATGCTTTCTAATTCTGACT+TGG	+	chr7.1:17252238-17252257	None:intergenic	30.0%
AATTAGCAGTGCTCATTTAA+AGG	-	chr7.1:17251235-17251254	MS.gene38769:intron	30.0%
AATTCATAGCTTAAGAATGG+AGG	+	chr7.1:17251219-17251238	None:intergenic	30.0%
ACTTCCCAATTGTTTATAGA+TGG	-	chr7.1:17250972-17250991	MS.gene38769:intron	30.0%
AGCATTTGAAGAATATCATC+AGG	+	chr7.1:17251850-17251869	None:intergenic	30.0%
AGCCCAGAAAATTATCTAAA+TGG	+	chr7.1:17250117-17250136	None:intergenic	30.0%
ATGCTTTCTAATTCTGACTT+GGG	+	chr7.1:17252237-17252256	None:intergenic	30.0%
CATGAGAATGCTAAAATTTG+CGG	-	chr7.1:17252096-17252115	MS.gene38769:intron	30.0%
CTCAAATAAACACACATACA+CGG	-	chr7.1:17250294-17250313	MS.gene38769:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	17249857	17252473	17249857	ID=MS.gene38769
chr7.1	mRNA	17249857	17252473	17249857	ID=MS.gene38769.t1;Parent=MS.gene38769
chr7.1	exon	17252402	17252473	17252402	ID=MS.gene38769.t1.exon1;Parent=MS.gene38769.t1
chr7.1	CDS	17252402	17252473	17252402	ID=cds.MS.gene38769.t1;Parent=MS.gene38769.t1
chr7.1	exon	17251330	17251686	17251330	ID=MS.gene38769.t1.exon2;Parent=MS.gene38769.t1
chr7.1	CDS	17251330	17251686	17251330	ID=cds.MS.gene38769.t1;Parent=MS.gene38769.t1
chr7.1	exon	17249857	17250576	17249857	ID=MS.gene38769.t1.exon3;Parent=MS.gene38769.t1
chr7.1	CDS	17249857	17250576	17249857	ID=cds.MS.gene38769.t1;Parent=MS.gene38769.t1

Gene Sequence

>MS.gene38769

ATGGTCGTCAACAGATTGAAGCGGGAGCAATGTGACCGAACAAAACATGATTCTAGCTTCTCCCACTGGAAGGTTCATATCAATTTTCTATATATCTTTTCTATTGTTAATAATAATGTGTTGTGTTTCTTATGTTAATGTTTCTACGATTCTGTGGTAAATAGAGTCTTGTATTTAGAAAATATGTGCCAGTGATGCCTAAAGTAAAGCCTAATACTTCATTCTTTTAGTGATTATTGTTAGTGTTAATTCTCCTTCCATTTAGATAATTTTCTGGGCTGCCACTTTTTAAAGCTTTCAATTTATACTTTGAAGAAAAAGCTATTGACTGTATGATGGCGTAGTGCTTAAAGAGGATGTGTGATGTGTGTCAGACTAAAAAATCTCAAGAACAAGATATTTTTTTATTTGGTTATTGGCCCAGTGGCCAACACATGCTCAAATAAACACACATACACGGGGAGGGGGAAGTGTGTTGACCCGGGATCAAACCTGGGATTCCACGTAAAATGTCCTCAAAGCCAAACCACTAGACTCTAATAGCAAGGACGAAAAGAATTCATCTCTAAGTCATTGATTTGATGACAAAAAATTAATTGAATGAATAAGTTTTACATGAAACTCAGTTTATATACTCCATATTATAGTGAAGTTAACAACTAAGCTAAGTTGTTATTACTAAATAACTAAAGCCATAATAGAATGACGAAAACTAGTTCTTTCAACTGTACAAATCTGGTTACCTTCTTACCTTGGTTTGGTTGCTCGTGTTATAAACTGTTTTCAGATTCTTATCGGTCCTTCTGATTGGGAAGACTATTCCAAAGAAAAGGAAGGATCTACCAGATACAGGATTCACAACCTTCCTCAGAAATTGGGTCCGGGGGTGTACGAGCTTGGAGTAGCTGTGTCGCGTAGTAATCTGGGCCGTGAAATTTACAAGCTTGCCACTGACCCTCATCGCATAGTTGTGGTTTACCTTGGAAAAGCTGACAATGTGAGAGCAAGACTCCAGCGTTATGGCAGGAATGGAGCTCATTTGAATAACACTTGTATGTCAGATGACTCTTCTCTACGAACGGGAAGGTCATTGTTTCAGGAGATATTTTCACAAGACTTCCCAATTGTTTATAGATGGGCTCCTGTAAGTACATATCTGATATTTCATTTGCATTTCAGATTTAATATCAAGATGATTGCAACTGAACATGTATTAATGGGTTTGGAAGTTAAGCTAGATGACTATTAGCTTCAGCATCTTAGGTTCGTTTCAAAAAAGTCATTGATTGGAAATGCACGTTATCATATGATAGTATAGGGTATAACTCAAAGGTTTTGGATAAATCAGATAAAATTTGACCTCCATTCTTAAGCTATGAATTAGCAGTGCTCATTTAAAGGCCTGAAATCTATGTAATTTAGGTTGTAATTTTAAGAGTTATGTTTGAATTTGAGTATATAGTGAAATACTAAACATATTTCATTTAATTCTTAGTCATAATTGAATGATCATTTCATTATTGTATCTAGATTGTTCTTAGAGCTAACCCAATTCCATTTTAAATGGGTCCAGTTTTGCTTTGGCCTGAAGTGCTGTGTATTGGGTTTGTTCAGTTCTAGAGATATGTTAGGATCCAAAAGTGACACAATCAAAATTTAGGACAAGGTTAGGGATAGCTATAACCCGTCTCTTGCTTGCCACTAGTCTATTATGATAATTCATATTTATGTCTATACCTAATGTCTCTGATGGAATTCAAAATCTACTGTTAATATGTGGTGTCGCATTTTACGAAATTTGGCACAAAATACATTTGCATCTTACACAAAAGATATATAAAAGTGCAATTTTTTGGAACTATAATGGTTTATCTGTGCAATGTTGTTTATTGAACAGATGCAAAACGAGGGAGATGCCCTGAGAACAGAATCTCAGCTGCTTAGTACATTTGATTATGCATGGAACACAATCAGCAATGGTACACGGAGGCCTGATGATATTCTTCAAATGCTCAACAAATTAGCTTCAGGCACTAGAACATTTTCAGATGTGGCCAAATTGCTTCTACCTTTCACCCAGAGGAAAGTGGGGATACCAATTAAATCAAGCAAGCTGCCTCTGACAGATGACAAACTGGATGAAGCTGACAGTGGCAGCTACAACGTCCTATCCCGTGTGTTCAAATTAAACAGGTCACGTCCTAGGATAGTTCAGGATACCACTGGTGGTAGTGCCACTCATGAGAATGCTAAAATTTGCGGAGTGATGTTGGCCGATGGTTCTATTTGTAAAAGGCCACCGGTTGAAAAAAGAGTGAGGTGTCCTGAACACAAAGGAATGAGAATAAATGCGTCCGCCGCCAAAGCAATCAGATCACCCAAGTCAGAATTAGAAAGCATTGTAGGTAATGCTTATAGGTACCAAAATGCCAGCCATGATGTAGAAGACCCTCCACAAAGAATGGTTAAGAGTCATGTTGATGAGGGTATCGCCAAAACCATTATGTGTGGAATCATCTTGGATGATGGATCCACTTGTAGAAGACAACCGGTTAAAGGAAGAAAAAGGTGCCAGGAACATAAAGGGAGGAGAATTCGTGCAAATTCGAAAAAATAA

Protein sequence

>MS.gene38769.t1

MVVNRLKREQCDRTKHDSSFSHWKILIGPSDWEDYSKEKEGSTRYRIHNLPQKLGPGVYELGVAVSRSNLGREIYKLATDPHRIVVVYLGKADNVRARLQRYGRNGAHLNNTCMSDDSSLRTGRSLFQEIFSQDFPIVYRWAPMQNEGDALRTESQLLSTFDYAWNTISNGTRRPDDILQMLNKLASGTRTFSDVAKLLLPFTQRKVGIPIKSSKLPLTDDKLDEADSGSYNVLSRVFKLNRSRPRIVQDTTGGSATHENAKICGVMLADGSICKRPPVEKRVRCPEHKGMRINASAAKAIRSPKSELESIVGNAYRYQNASHDVEDPPQRMVKSHVDEGIAKTIMCGIILDDGSTCRRQPVKGRKRCQEHKGRRIRANSKK