Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38825.t1 | XP_003625012.1 | 99.7 | 364 | 1 | 0 | 1 | 364 | 1 | 364 | 3.90E-192 | 680.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38825.t1 | Q2HW56 | 99.7 | 364 | 1 | 0 | 1 | 364 | 1 | 364 | 9.4e-195 | 680.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38825.t1 | B9H966 | 89.6 | 366 | 34 | 2 | 1 | 364 | 1 | 364 | 2.3e-178 | 634.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene38825.t1 | TR | TRAF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38825.t1 | MTR_7g090020 | 99.725 | 364 | 1 | 0 | 1 | 364 | 1 | 364 | 0.0 | 748 |
| MS.gene38825.t1 | MTR_1g051025 | 87.637 | 364 | 44 | 1 | 1 | 364 | 1 | 363 | 0.0 | 629 |
| MS.gene38825.t1 | MTR_5g090770 | 34.615 | 338 | 197 | 7 | 24 | 358 | 66 | 382 | 6.92e-51 | 176 |
| MS.gene38825.t1 | MTR_2g028950 | 36.158 | 354 | 205 | 7 | 6 | 358 | 44 | 377 | 1.32e-50 | 177 |
| MS.gene38825.t1 | MTR_2g028950 | 36.158 | 354 | 205 | 7 | 6 | 358 | 44 | 377 | 4.49e-50 | 177 |
| MS.gene38825.t1 | MTR_5g090770 | 34.615 | 338 | 197 | 7 | 24 | 358 | 66 | 382 | 1.50e-49 | 175 |
| MS.gene38825.t1 | MTR_2g039880 | 30.769 | 338 | 201 | 5 | 24 | 358 | 65 | 372 | 7.20e-32 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38825.t1 | AT2G41370 | 84.367 | 371 | 46 | 4 | 2 | 364 | 3 | 369 | 0.0 | 636 |
| MS.gene38825.t1 | AT3G57130 | 82.337 | 368 | 51 | 3 | 2 | 364 | 4 | 362 | 0.0 | 614 |
| MS.gene38825.t1 | AT3G57130 | 74.699 | 166 | 34 | 2 | 2 | 162 | 4 | 166 | 4.66e-84 | 253 |
| MS.gene38825.t1 | AT4G19660 | 32.312 | 359 | 205 | 7 | 6 | 358 | 34 | 360 | 7.09e-44 | 160 |
| MS.gene38825.t1 | AT4G19660 | 32.312 | 359 | 205 | 7 | 6 | 358 | 34 | 360 | 9.66e-44 | 160 |
| MS.gene38825.t1 | AT5G45110 | 31.268 | 355 | 219 | 6 | 6 | 359 | 40 | 370 | 1.41e-41 | 152 |
| MS.gene38825.t1 | AT5G45110 | 31.268 | 355 | 219 | 6 | 6 | 359 | 40 | 370 | 3.64e-41 | 152 |
| MS.gene38825.t1 | AT1G64280 | 29.787 | 329 | 201 | 5 | 32 | 358 | 73 | 373 | 8.31e-34 | 132 |
| MS.gene38825.t1 | AT4G26120 | 29.878 | 328 | 197 | 6 | 33 | 358 | 76 | 372 | 5.71e-32 | 127 |
| MS.gene38825.t1 | AT4G26120 | 29.878 | 328 | 197 | 6 | 33 | 358 | 77 | 373 | 5.74e-32 | 127 |
Find 95 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATAGAAAATCTGAAGTT+AGG | 0.230108 | 7.4:+18781996 | None:intergenic |
| GATGCGAAGCTCTTCGATTT+TGG | 0.235029 | 7.4:+18782432 | None:intergenic |
| TGTGGGCCAGACCCACCTTC+TGG | 0.259914 | 7.4:-18784275 | MS.gene38825:CDS |
| ATGATGGTGGTGAGGCATTA+AGG | 0.333824 | 7.4:+18782387 | None:intergenic |
| AACAAGACATGCACCAACTA+TGG | 0.344045 | 7.4:-18782534 | MS.gene38825:CDS |
| CTAATGCTTCATCAAGGTTT+AGG | 0.354695 | 7.4:+18782242 | None:intergenic |
| GGAGATGGTCTCACCGGATA+TGG | 0.367743 | 7.4:-18782098 | MS.gene38825:CDS |
| TGCAGCCGATGTTAACTTCC+CGG | 0.370396 | 7.4:-18782158 | MS.gene38825:CDS |
| CAACCACGGTCACCACAATT+AGG | 0.374903 | 7.4:+18784098 | None:intergenic |
| CCATCAACTGTTCTCACATT+CGG | 0.388403 | 7.4:+18782046 | None:intergenic |
| AACTTCCCGGCTGGTCCAAC+GGG | 0.394050 | 7.4:-18782145 | MS.gene38825:CDS |
| CATCAACTGTTCTCACATTC+GGG | 0.411634 | 7.4:+18782047 | None:intergenic |
| CTGCAATTCTCAACGGCATA+AGG | 0.421725 | 7.4:+18782214 | None:intergenic |
| AGAAGTTGTGAAAGCCTTGT+TGG | 0.425240 | 7.4:-18782188 | MS.gene38825:CDS |
| GAGATCTTAGTGAGTCTTCA+AGG | 0.426128 | 7.4:+18784432 | None:intergenic |
| GGGTTGACTCGGTTTCCTGA+TGG | 0.427587 | 7.4:+18784245 | None:intergenic |
| GAATAGAAAATCTGAAGTTA+GGG | 0.433840 | 7.4:+18781997 | None:intergenic |
| TCGTAACCAACTGAGTTAAC+TGG | 0.436058 | 7.4:+18784194 | None:intergenic |
| GGTTGACTCGGTTTCCTGAT+GGG | 0.440013 | 7.4:+18784246 | None:intergenic |
| AACACCAGACCTAGCTGAAC+CGG | 0.442219 | 7.4:+18784220 | None:intergenic |
| AGCAATACAGCCACCATATC+CGG | 0.442702 | 7.4:+18782085 | None:intergenic |
| TTCTTCAGAAAATTCTTCTG+TGG | 0.443436 | 7.4:-18784293 | MS.gene38825:CDS |
| CTTGTGAAACTCATGGTAAT+GGG | 0.452131 | 7.4:-18782271 | MS.gene38825:CDS |
| GCTTGTGAAACTCATGGTAA+TGG | 0.456091 | 7.4:-18782272 | MS.gene38825:CDS |
| TCTAATCCAGAAGGTGGGTC+TGG | 0.456640 | 7.4:+18784269 | None:intergenic |
| CATTAAGGAGCGGCGTGATA+AGG | 0.463719 | 7.4:+18782402 | None:intergenic |
| GTCTTCAAGGTCGGCTGCAG+CGG | 0.467472 | 7.4:+18782342 | None:intergenic |
| GTTATACCAGTTAACTCAGT+TGG | 0.472537 | 7.4:-18784200 | MS.gene38825:CDS |
| TCCCACCTTGTAGCAAAATC+AGG | 0.472615 | 7.4:-18782502 | MS.gene38825:CDS |
| GGTCGGCTGCAGCGGTGAGA+TGG | 0.490105 | 7.4:+18782350 | None:intergenic |
| GCCGATGTTAACTTCCCGGC+TGG | 0.496241 | 7.4:-18782154 | MS.gene38825:CDS |
| AGTTGATGGTGTTACACCCT+TGG | 0.497853 | 7.4:-18782032 | MS.gene38825:CDS |
| ATTGTGGTGACCGTGGTTGT+TGG | 0.504368 | 7.4:-18784094 | MS.gene38825:CDS |
| TAACTTCCCGGCTGGTCCAA+CGG | 0.512321 | 7.4:-18782146 | MS.gene38825:CDS |
| TCTTCAGAAAATTCTTCTGT+GGG | 0.516918 | 7.4:-18784292 | MS.gene38825:CDS |
| ACGCTTGTCCGTTGATGAGA+AGG | 0.520055 | 7.4:+18784390 | None:intergenic |
| CCGAATGTGAGAACAGTTGA+TGG | 0.521071 | 7.4:-18782046 | MS.gene38825:CDS |
| CCTTCTGGATTAGACCCATC+AGG | 0.521120 | 7.4:-18784260 | MS.gene38825:CDS |
| GCTACATATTGCAGCGGAGA+TGG | 0.524554 | 7.4:-18782113 | MS.gene38825:CDS |
| CTTTCAGCCGCTAGATACTT+CGG | 0.525081 | 7.4:-18784029 | MS.gene38825:CDS |
| TGCTACAAGGTGGGAACATG+TGG | 0.531996 | 7.4:+18782510 | None:intergenic |
| TAGGGTTCTTAGAATGTCCA+AGG | 0.536805 | 7.4:+18782015 | None:intergenic |
| CCATCCGGTTCAGCTAGGTC+TGG | 0.539454 | 7.4:-18784224 | MS.gene38825:CDS |
| GGAAACCGAGTCAACCCATC+CGG | 0.539988 | 7.4:-18784239 | MS.gene38825:CDS |
| GGTCGTGATGGTGAGGATGA+TGG | 0.543235 | 7.4:+18782371 | None:intergenic |
| TACTTAAACCTTCTCATCAA+CGG | 0.546164 | 7.4:-18784398 | MS.gene38825:CDS |
| TCACATTCGGGTCAGCGTGA+TGG | 0.551477 | 7.4:+18782059 | None:intergenic |
| CTGAACCGGATGGGTTGACT+CGG | 0.552813 | 7.4:+18784234 | None:intergenic |
| GGCCTAGGTTCATGTTTCTG+AGG | 0.555362 | 7.4:+18784119 | None:intergenic |
| CTCGACGTCTGAGGAGTCGA+GGG | 0.562950 | 7.4:+18782294 | None:intergenic |
| TGCAGCGGAGATGGTCTCAC+CGG | 0.562963 | 7.4:-18782104 | MS.gene38825:CDS |
| GCTCGACGTCTGAGGAGTCG+AGG | 0.564744 | 7.4:+18782293 | None:intergenic |
| AAACTCATGGTAATGGGAGA+AGG | 0.568060 | 7.4:-18782265 | MS.gene38825:CDS |
| ACAGCTTGCATTGCTCACTC+AGG | 0.569799 | 7.4:-18784000 | MS.gene38825:intron |
| GTAATGCTAATGCTTCATCA+AGG | 0.571238 | 7.4:+18782236 | None:intergenic |
| GTGAAAGCCTTGTTGGAACT+CGG | 0.572326 | 7.4:-18782181 | MS.gene38825:CDS |
| ATGCTTCAGTTTCTGTACAG+TGG | 0.576559 | 7.4:-18784158 | MS.gene38825:CDS |
| TTTCATTACATCTTCAATCG+AGG | 0.580013 | 7.4:+18782576 | None:intergenic |
| AAGAGCAAGATCAACGGCTG+AGG | 0.588511 | 7.4:+18784058 | None:intergenic |
| CGGTCACCACAATTAGGCCT+AGG | 0.589003 | 7.4:+18784104 | None:intergenic |
| TTCTCTACTGCAATTCTCAA+CGG | 0.590267 | 7.4:+18782207 | None:intergenic |
| TCAACCCATCCGGTTCAGCT+AGG | 0.592108 | 7.4:-18784229 | MS.gene38825:CDS |
| CTAAGATGCATCTGTGTGCG+TGG | 0.593852 | 7.4:+18784330 | None:intergenic |
| TAAGGAGCGGCGTGATAAGG+AGG | 0.595576 | 7.4:+18782405 | None:intergenic |
| GGGAACATGTGGTCCATAGT+TGG | 0.598309 | 7.4:+18782521 | None:intergenic |
| GATGGGTCTAATCCAGAAGG+TGG | 0.598545 | 7.4:+18784263 | None:intergenic |
| ACAGAAACAACTAGCGAGCA+TGG | 0.599468 | 7.4:-18782608 | MS.gene38825:intron |
| CGTCGAGCTTGTGAAACTCA+TGG | 0.600204 | 7.4:-18782278 | MS.gene38825:CDS |
| AGTTAACTCAGTTGGTTACG+AGG | 0.607152 | 7.4:-18784192 | MS.gene38825:CDS |
| GATGGTCTCACCGGATATGG+TGG | 0.607668 | 7.4:-18782095 | MS.gene38825:CDS |
| CGAGGGCTCGTCTCATCCGA+CGG | 0.607669 | 7.4:+18782311 | None:intergenic |
| CAGCGGTGAGATGGTCGTGA+TGG | 0.610483 | 7.4:+18782359 | None:intergenic |
| CCAGACCTAGCTGAACCGGA+TGG | 0.611566 | 7.4:+18784224 | None:intergenic |
| AGATCTTAGTGAGTCTTCAA+GGG | 0.612991 | 7.4:+18784433 | None:intergenic |
| TTTCACAAGCTCGACGTCTG+AGG | 0.613011 | 7.4:+18782285 | None:intergenic |
| CCTGATGGGTCTAATCCAGA+AGG | 0.623455 | 7.4:+18784260 | None:intergenic |
| CAGACCTAGCTGAACCGGAT+GGG | 0.623790 | 7.4:+18784225 | None:intergenic |
| TGGTGAGGATGATGGTGGTG+AGG | 0.629304 | 7.4:+18782379 | None:intergenic |
| CGTGATGGTGAGGATGATGG+TGG | 0.631651 | 7.4:+18782374 | None:intergenic |
| CATGAACCTAGGCCTAATTG+TGG | 0.646688 | 7.4:-18784110 | MS.gene38825:CDS |
| GGCTGCACCGAGTTCCAACA+AGG | 0.646855 | 7.4:+18782174 | None:intergenic |
| AGTATCAAGAGCAAGATCAA+CGG | 0.653625 | 7.4:+18784052 | None:intergenic |
| GTGAGATGGTCGTGATGGTG+AGG | 0.655300 | 7.4:+18782364 | None:intergenic |
| ATGGGTCTAATCCAGAAGGT+GGG | 0.656727 | 7.4:+18784264 | None:intergenic |
| ATCTCCGCTGCAATATGTAG+CGG | 0.657846 | 7.4:+18782115 | None:intergenic |
| AGGGTTCTTAGAATGTCCAA+GGG | 0.662287 | 7.4:+18782016 | None:intergenic |
| TTCAACTCCGAAGTATCTAG+CGG | 0.662542 | 7.4:+18784022 | None:intergenic |
| TTCCTCAGAAACATGAACCT+AGG | 0.668829 | 7.4:-18784121 | MS.gene38825:CDS |
| AACTCCGCTACATATTGCAG+CGG | 0.669845 | 7.4:-18782119 | MS.gene38825:CDS |
| GGTGGTGAGGCATTAAGGAG+CGG | 0.674544 | 7.4:+18782392 | None:intergenic |
| AATGTGTATGCCAACAACCA+CGG | 0.675672 | 7.4:+18784084 | None:intergenic |
| ACCAGCCGGGAAGTTAACAT+CGG | 0.692763 | 7.4:+18782153 | None:intergenic |
| TTGAAGACCAGAAAATCCGT+CGG | 0.696642 | 7.4:-18782327 | MS.gene38825:CDS |
| AGGCCTAATTGTGGTGACCG+TGG | 0.704495 | 7.4:-18784101 | MS.gene38825:CDS |
| GAAACAACTAGCGAGCATGG+TGG | 0.736366 | 7.4:-18782605 | MS.gene38825:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAGGAATTTTTTTAT+AGG | - | chr7.4:18783710-18783729 | MS.gene38825:intron | 10.0% |
| !! | AAAACAATAATAAAGAGAAA+AGG | + | chr7.4:18782467-18782486 | None:intergenic | 15.0% |
| !! | ATCACAAATTAACAAAAATA+TGG | + | chr7.4:18783088-18783107 | None:intergenic | 15.0% |
| !! | TATGGAAAAAATAAAATCAA+AGG | + | chr7.4:18783070-18783089 | None:intergenic | 15.0% |
| !!! | CATCAATTTTTTAATGAAAT+AGG | - | chr7.4:18782735-18782754 | MS.gene38825:intron | 15.0% |
| !! | ATAAACACATTGAAAATTAG+TGG | + | chr7.4:18783576-18783595 | None:intergenic | 20.0% |
| !!! | AACATTGATGCATTTTTTAT+AGG | - | chr7.4:18783696-18783715 | MS.gene38825:intron | 20.0% |
| !!! | ATGTTTTTTATCTGTCTTTA+CGG | + | chr7.4:18783017-18783036 | None:intergenic | 20.0% |
| !!! | TAATTTTCAATGTGTTTATG+TGG | - | chr7.4:18783577-18783596 | MS.gene38825:intron | 20.0% |
| ! | AAAAAACTACATTTCATGCA+AGG | + | chr7.4:18783454-18783473 | None:intergenic | 25.0% |
| ! | AAAAACTACATTTCATGCAA+GGG | + | chr7.4:18783453-18783472 | None:intergenic | 25.0% |
| ! | AAAGGAATCAATTAATGTGA+CGG | + | chr7.4:18783052-18783071 | None:intergenic | 25.0% |
| ! | AATTTAGAAACTCATTCTAG+TGG | + | chr7.4:18783198-18783217 | None:intergenic | 25.0% |
| ! | ATTTAGAAACTCATTCTAGT+GGG | + | chr7.4:18783197-18783216 | None:intergenic | 25.0% |
| ! | ATTTCATGTTATGTATGTAC+TGG | - | chr7.4:18783121-18783140 | MS.gene38825:intron | 25.0% |
| ! | CAATAATAAAGAGAAAAGGA+AGG | + | chr7.4:18782463-18782482 | None:intergenic | 25.0% |
| ! | GACAGTAGAATTAATTAATG+AGG | + | chr7.4:18782951-18782970 | None:intergenic | 25.0% |
| ! | GCTATAACAATCTAAACTAT+AGG | - | chr7.4:18783495-18783514 | MS.gene38825:intron | 25.0% |
| ! | TCAACAATAGATAGATAACT+TGG | - | chr7.4:18782831-18782850 | MS.gene38825:intron | 25.0% |
| ! | TTCTCTACTACACTTATTAA+TGG | + | chr7.4:18782492-18782511 | None:intergenic | 25.0% |
| !! | CTATTTAAAACCTAATTGCT+TGG | - | chr7.4:18783654-18783673 | MS.gene38825:intron | 25.0% |
| !! | GAATAGAAAATCTGAAGTTA+GGG | + | chr7.4:18784436-18784455 | None:intergenic | 25.0% |
| !! | TCTTAATCATGATTGTGTTT+TGG | + | chr7.4:18783603-18783622 | None:intergenic | 25.0% |
| !! | TGAATAGAAAATCTGAAGTT+AGG | + | chr7.4:18784437-18784456 | None:intergenic | 25.0% |
| !!! | ATTTGGTCTTAAAGAAGAAA+AGG | - | chr7.4:18783304-18783323 | MS.gene38825:intron | 25.0% |
| !!! | ATTTTGGCTATGATATCAAT+AGG | + | chr7.4:18783985-18784004 | None:intergenic | 25.0% |
| !!! | CATATATAATAGCATTGATG+CGG | + | chr7.4:18783626-18783645 | None:intergenic | 25.0% |
| !!! | TTTGGTCTTAAAGAAGAAAA+GGG | - | chr7.4:18783305-18783324 | MS.gene38825:intron | 25.0% |
| !!! | TTTTGGCTATGATATCAATA+GGG | + | chr7.4:18783984-18784003 | None:intergenic | 25.0% |
| ATACATTCACTTTCCTCATT+TGG | - | chr7.4:18783287-18783306 | MS.gene38825:intron | 30.0% | |
| ATCTATCTATTGTTGATCGA+TGG | + | chr7.4:18782827-18782846 | None:intergenic | 30.0% | |
| ATGAGGAAAGTGAATGTATT+TGG | + | chr7.4:18783286-18783305 | None:intergenic | 30.0% | |
| ATGTATGTACTGGAAATTAG+AGG | - | chr7.4:18783131-18783150 | MS.gene38825:intron | 30.0% | |
| CAATAGATAGATAACTTGGT+TGG | - | chr7.4:18782835-18782854 | MS.gene38825:intron | 30.0% | |
| GAAAGAGAGTTAGACATAAA+TGG | + | chr7.4:18783332-18783351 | None:intergenic | 30.0% | |
| GAAGACACAAGATCAAATAA+TGG | + | chr7.4:18782868-18782887 | None:intergenic | 30.0% | |
| TACTTAAACCTTCTCATCAA+CGG | - | chr7.4:18782032-18782051 | MS.gene38825:CDS | 30.0% | |
| TCTATCTATTGTTGATCGAT+GGG | + | chr7.4:18782826-18782845 | None:intergenic | 30.0% | |
| TCTCTTTCATTTACCAAATG+AGG | - | chr7.4:18783344-18783363 | MS.gene38825:intron | 30.0% | |
| TCTTCAGAAAATTCTTCTGT+GGG | - | chr7.4:18782138-18782157 | MS.gene38825:CDS | 30.0% | |
| TGAGGAAAGTGAATGTATTT+GGG | + | chr7.4:18783285-18783304 | None:intergenic | 30.0% | |
| TTCTTCAGAAAATTCTTCTG+TGG | - | chr7.4:18782137-18782156 | MS.gene38825:CDS | 30.0% | |
| TTTCATTACATCTTCAATCG+AGG | + | chr7.4:18783857-18783876 | None:intergenic | 30.0% | |
| !! | TTCTTCTTTAAGACCAAATG+AGG | + | chr7.4:18783303-18783322 | None:intergenic | 30.0% |
| !! | TTTTTGTTAATTAATGGGCG+AGG | - | chr7.4:18782679-18782698 | MS.gene38825:intron | 30.0% |
| AGATCTTAGTGAGTCTTCAA+GGG | + | chr7.4:18782000-18782019 | None:intergenic | 35.0% | |
| AGTATCAAGAGCAAGATCAA+CGG | + | chr7.4:18782381-18782400 | None:intergenic | 35.0% | |
| CATGCAAGGGAAAAAAGTTT+GGG | + | chr7.4:18783440-18783459 | None:intergenic | 35.0% | |
| CATTAATACAACTGCGATTG+AGG | - | chr7.4:18783543-18783562 | MS.gene38825:intron | 35.0% | |
| CGATTTCATTCCAAGCAATT+AGG | + | chr7.4:18783667-18783686 | None:intergenic | 35.0% | |
| CTAATGCTTCATCAAGGTTT+AGG | + | chr7.4:18784191-18784210 | None:intergenic | 35.0% | |
| CTTGTGAAACTCATGGTAAT+GGG | - | chr7.4:18784159-18784178 | MS.gene38825:CDS | 35.0% | |
| GTAATGCTAATGCTTCATCA+AGG | + | chr7.4:18784197-18784216 | None:intergenic | 35.0% | |
| GTTATACCAGTTAACTCAGT+TGG | - | chr7.4:18782230-18782249 | MS.gene38825:CDS | 35.0% | |
| TCATGCAAGGGAAAAAAGTT+TGG | + | chr7.4:18783441-18783460 | None:intergenic | 35.0% | |
| TTCTCTACTGCAATTCTCAA+CGG | + | chr7.4:18784226-18784245 | None:intergenic | 35.0% | |
| ! | ACATGACAGTTTTCTCGATT+TGG | - | chr7.4:18783161-18783180 | MS.gene38825:intron | 35.0% |
| ! | AGATGTTTTGCAAGTACTTC+TGG | + | chr7.4:18783961-18783980 | None:intergenic | 35.0% |
| ! | AGGGAAAAAAGTTTGGGATT+TGG | + | chr7.4:18783434-18783453 | None:intergenic | 35.0% |
| ! | ATGTTTTGCAAGTACTTCTG+GGG | + | chr7.4:18783959-18783978 | None:intergenic | 35.0% |
| ! | GAGGAATGAGAATGAGATTT+TGG | - | chr7.4:18782698-18782717 | MS.gene38825:intron | 35.0% |
| ! | GATGTTTTGCAAGTACTTCT+GGG | + | chr7.4:18783960-18783979 | None:intergenic | 35.0% |
| !!! | GTGGTTTTGTTATCCTCATT+TGG | + | chr7.4:18783360-18783379 | None:intergenic | 35.0% |
| !!! | TCGTATGTTTTTTGGGTCTT+GGG | - | chr7.4:18782599-18782618 | MS.gene38825:CDS | 35.0% |
| !!! | TGACCAGTCGTATGTTTTTT+GGG | - | chr7.4:18782592-18782611 | MS.gene38825:CDS | 35.0% |
| !!! | TGTCTTGTTTTCTTGATGCT+AGG | + | chr7.4:18783885-18783904 | None:intergenic | 35.0% |
| !!! | TTCCACAGTTACTGGTTTTT+GGG | - | chr7.4:18782625-18782644 | MS.gene38825:intron | 35.0% |
| !!! | TTTCCACAGTTACTGGTTTT+TGG | - | chr7.4:18782624-18782643 | MS.gene38825:intron | 35.0% |
| AACAAGACATGCACCAACTA+TGG | - | chr7.4:18783896-18783915 | MS.gene38825:intron | 40.0% | |
| AATGTGTATGCCAACAACCA+CGG | + | chr7.4:18782349-18782368 | None:intergenic | 40.0% | |
| AGACCCAAAAAACATACGAC+TGG | + | chr7.4:18782598-18782617 | None:intergenic | 40.0% | |
| AGCAAAGAGAAGAAAGTGAG+TGG | + | chr7.4:18783379-18783398 | None:intergenic | 40.0% | |
| AGGGTTCTTAGAATGTCCAA+GGG | + | chr7.4:18784417-18784436 | None:intergenic | 40.0% | |
| AGTTAACTCAGTTGGTTACG+AGG | - | chr7.4:18782238-18782257 | MS.gene38825:CDS | 40.0% | |
| ATGCTTCAGTTTCTGTACAG+TGG | - | chr7.4:18782272-18782291 | MS.gene38825:CDS | 40.0% | |
| CATCAACTGTTCTCACATTC+GGG | + | chr7.4:18784386-18784405 | None:intergenic | 40.0% | |
| CCATCAACTGTTCTCACATT+CGG | + | chr7.4:18784387-18784406 | None:intergenic | 40.0% | |
| GAGATCTTAGTGAGTCTTCA+AGG | + | chr7.4:18782001-18782020 | None:intergenic | 40.0% | |
| GCTTGTGAAACTCATGGTAA+TGG | - | chr7.4:18784158-18784177 | MS.gene38825:CDS | 40.0% | |
| TAGGGTTCTTAGAATGTCCA+AGG | + | chr7.4:18784418-18784437 | None:intergenic | 40.0% | |
| TCAAGCAACAAACTGTGAAG+AGG | + | chr7.4:18782987-18783006 | None:intergenic | 40.0% | |
| TCGTAACCAACTGAGTTAAC+TGG | + | chr7.4:18782239-18782258 | None:intergenic | 40.0% | |
| TTCCCAAAAACCAGTAACTG+TGG | + | chr7.4:18782630-18782649 | None:intergenic | 40.0% | |
| TTCCTCAGAAACATGAACCT+AGG | - | chr7.4:18782309-18782328 | MS.gene38825:CDS | 40.0% | |
| TTGAAGACCAGAAAATCCGT+CGG | - | chr7.4:18784103-18784122 | MS.gene38825:CDS | 40.0% | |
| TTGGGAATTTCCACAGTTAC+TGG | - | chr7.4:18782617-18782636 | MS.gene38825:intron | 40.0% | |
| ! | ACCTGATTTTGCTACAAGGT+GGG | + | chr7.4:18783932-18783951 | None:intergenic | 40.0% |
| ! | AGAAGTTGTGAAAGCCTTGT+TGG | - | chr7.4:18784242-18784261 | MS.gene38825:CDS | 40.0% |
| ! | GAAGACCTGATTTTGCTACA+AGG | + | chr7.4:18783936-18783955 | None:intergenic | 40.0% |
| ! | TGTTTTGCAAGTACTTCTGG+GGG | + | chr7.4:18783958-18783977 | None:intergenic | 40.0% |
| ! | TTCAACTCCGAAGTATCTAG+CGG | + | chr7.4:18782411-18782430 | None:intergenic | 40.0% |
| !! | AAACTCATGGTAATGGGAGA+AGG | - | chr7.4:18784165-18784184 | MS.gene38825:CDS | 40.0% |
| !! | GATTTTCTGGTCTTCAAGGT+CGG | + | chr7.4:18784100-18784119 | None:intergenic | 40.0% |
| !!! | AGTTACTGGTTTTTGGGAAC+TGG | - | chr7.4:18782631-18782650 | MS.gene38825:intron | 40.0% |
| !!! | GTCGTATGTTTTTTGGGTCT+TGG | - | chr7.4:18782598-18782617 | MS.gene38825:CDS | 40.0% |
| !!! | GTGACCAGTCGTATGTTTTT+TGG | - | chr7.4:18782591-18782610 | MS.gene38825:CDS | 40.0% |
| !!! | GTTACTGGTTTTTGGGAACT+GGG | - | chr7.4:18782632-18782651 | MS.gene38825:intron | 40.0% |
| AACTCCGCTACATATTGCAG+CGG | - | chr7.4:18784311-18784330 | MS.gene38825:CDS | 45.0% | |
| ACAGAAACAACTAGCGAGCA+TGG | - | chr7.4:18783822-18783841 | MS.gene38825:intron | 45.0% | |
| AGCAATACAGCCACCATATC+CGG | + | chr7.4:18784348-18784367 | None:intergenic | 45.0% | |
| ATCTCCGCTGCAATATGTAG+CGG | + | chr7.4:18784318-18784337 | None:intergenic | 45.0% | |
| ATGGGTCTAATCCAGAAGGT+GGG | + | chr7.4:18782169-18782188 | None:intergenic | 45.0% | |
| CATGAACCTAGGCCTAATTG+TGG | - | chr7.4:18782320-18782339 | MS.gene38825:CDS | 45.0% | |
| CCGAATGTGAGAACAGTTGA+TGG | - | chr7.4:18784384-18784403 | MS.gene38825:CDS | 45.0% | |
| CTGCAATTCTCAACGGCATA+AGG | + | chr7.4:18784219-18784238 | None:intergenic | 45.0% | |
| CTTTCAGCCGCTAGATACTT+CGG | - | chr7.4:18782401-18782420 | MS.gene38825:CDS | 45.0% | |
| TCCCACCTTGTAGCAAAATC+AGG | - | chr7.4:18783928-18783947 | MS.gene38825:intron | 45.0% | |
| ! | GACCTGATTTTGCTACAAGG+TGG | + | chr7.4:18783933-18783952 | None:intergenic | 45.0% |
| ! | GATGCGAAGCTCTTCGATTT+TGG | + | chr7.4:18784001-18784020 | None:intergenic | 45.0% |
| !! | AGTTGATGGTGTTACACCCT+TGG | - | chr7.4:18784398-18784417 | MS.gene38825:CDS | 45.0% |
| !! | ATGATGGTGGTGAGGCATTA+AGG | + | chr7.4:18784046-18784065 | None:intergenic | 45.0% |
| !! | GACGGATTTTCTGGTCTTCA+AGG | + | chr7.4:18784104-18784123 | None:intergenic | 45.0% |
| !! | GTGAAAGCCTTGTTGGAACT+CGG | - | chr7.4:18784249-18784268 | MS.gene38825:CDS | 45.0% |
| !!! | ATTATTTTTTGTTAATTAAT+GGG | - | chr7.4:18782674-18782693 | MS.gene38825:intron | 5.0% |
| !!! | TATTATTTTTTGTTAATTAA+TGG | - | chr7.4:18782673-18782692 | MS.gene38825:intron | 5.0% |
| AACACCAGACCTAGCTGAAC+CGG | + | chr7.4:18782213-18782232 | None:intergenic | 50.0% | |
| AAGAGCAAGATCAACGGCTG+AGG | + | chr7.4:18782375-18782394 | None:intergenic | 50.0% | |
| ACAGCTTGCATTGCTCACTC+AGG | - | chr7.4:18782430-18782449 | MS.gene38825:CDS | 50.0% | |
| ACCAGCCGGGAAGTTAACAT+CGG | + | chr7.4:18784280-18784299 | None:intergenic | 50.0% | |
| ATTGTGGTGACCGTGGTTGT+TGG | - | chr7.4:18782336-18782355 | MS.gene38825:CDS | 50.0% | |
| CAACCACGGTCACCACAATT+AGG | + | chr7.4:18782335-18782354 | None:intergenic | 50.0% | |
| CATTAAGGAGCGGCGTGATA+AGG | + | chr7.4:18784031-18784050 | None:intergenic | 50.0% | |
| CGTCGAGCTTGTGAAACTCA+TGG | - | chr7.4:18784152-18784171 | MS.gene38825:CDS | 50.0% | |
| CTAAGATGCATCTGTGTGCG+TGG | + | chr7.4:18782103-18782122 | None:intergenic | 50.0% | |
| GAAACAACTAGCGAGCATGG+TGG | - | chr7.4:18783825-18783844 | MS.gene38825:intron | 50.0% | |
| GATGGGTCTAATCCAGAAGG+TGG | + | chr7.4:18782170-18782189 | None:intergenic | 50.0% | |
| GCTACATATTGCAGCGGAGA+TGG | - | chr7.4:18784317-18784336 | MS.gene38825:CDS | 50.0% | |
| GGGAACATGTGGTCCATAGT+TGG | + | chr7.4:18783912-18783931 | None:intergenic | 50.0% | |
| TCTAATCCAGAAGGTGGGTC+TGG | + | chr7.4:18782164-18782183 | None:intergenic | 50.0% | |
| TGCAGCCGATGTTAACTTCC+CGG | - | chr7.4:18784272-18784291 | MS.gene38825:CDS | 50.0% | |
| TGCTACAAGGTGGGAACATG+TGG | + | chr7.4:18783923-18783942 | None:intergenic | 50.0% | |
| TTTCACAAGCTCGACGTCTG+AGG | + | chr7.4:18784148-18784167 | None:intergenic | 50.0% | |
| ! | ACGCTTGTCCGTTGATGAGA+AGG | + | chr7.4:18782043-18782062 | None:intergenic | 50.0% |
| ! | CCTGATGGGTCTAATCCAGA+AGG | + | chr7.4:18782173-18782192 | None:intergenic | 50.0% |
| ! | CCTTCTGGATTAGACCCATC+AGG | - | chr7.4:18782170-18782189 | MS.gene38825:CDS | 50.0% |
| ! | GGCCTAGGTTCATGTTTCTG+AGG | + | chr7.4:18782314-18782333 | None:intergenic | 50.0% |
| !! | CTGGTTTTTGGGAACTGGGA+AGG | - | chr7.4:18782636-18782655 | MS.gene38825:intron | 50.0% |
| !! | GACGTTGTTTTCAGCGTCGA+AGG | - | chr7.4:18782068-18782087 | MS.gene38825:CDS | 50.0% |
| !! | GGTTGACTCGGTTTCCTGAT+GGG | + | chr7.4:18782187-18782206 | None:intergenic | 50.0% |
| !! | GTCTCATCCGACGGATTTTC+TGG | + | chr7.4:18784113-18784132 | None:intergenic | 50.0% |
| !! | TGTAGCGGAGTTTTACCCGT+TGG | + | chr7.4:18784303-18784322 | None:intergenic | 50.0% |
| AGGCCTAATTGTGGTGACCG+TGG | - | chr7.4:18782329-18782348 | MS.gene38825:CDS | 55.0% | |
| CAGACCTAGCTGAACCGGAT+GGG | + | chr7.4:18782208-18782227 | None:intergenic | 55.0% | |
| CGGTCACCACAATTAGGCCT+AGG | + | chr7.4:18782329-18782348 | None:intergenic | 55.0% | |
| CGTGCACTAGCTGACTGTGT+TGG | + | chr7.4:18783250-18783269 | None:intergenic | 55.0% | |
| GATGGTCTCACCGGATATGG+TGG | - | chr7.4:18784335-18784354 | MS.gene38825:CDS | 55.0% | |
| GGAAACCGAGTCAACCCATC+CGG | - | chr7.4:18782191-18782210 | MS.gene38825:CDS | 55.0% | |
| GGAGATGGTCTCACCGGATA+TGG | - | chr7.4:18784332-18784351 | MS.gene38825:CDS | 55.0% | |
| TAAGGAGCGGCGTGATAAGG+AGG | + | chr7.4:18784028-18784047 | None:intergenic | 55.0% | |
| TCAACCCATCCGGTTCAGCT+AGG | - | chr7.4:18782201-18782220 | MS.gene38825:CDS | 55.0% | |
| TCACATTCGGGTCAGCGTGA+TGG | + | chr7.4:18784374-18784393 | None:intergenic | 55.0% | |
| ! | CGTGATGGTGAGGATGATGG+TGG | + | chr7.4:18784059-18784078 | None:intergenic | 55.0% |
| ! | GGTCGTGATGGTGAGGATGA+TGG | + | chr7.4:18784062-18784081 | None:intergenic | 55.0% |
| ! | GGTGGTGAGGCATTAAGGAG+CGG | + | chr7.4:18784041-18784060 | None:intergenic | 55.0% |
| ! | GTGAGATGGTCGTGATGGTG+AGG | + | chr7.4:18784069-18784088 | None:intergenic | 55.0% |
| ! | GTTTTACCCGTTGGACCAGC+CGG | + | chr7.4:18784294-18784313 | None:intergenic | 55.0% |
| ! | TAACTTCCCGGCTGGTCCAA+CGG | - | chr7.4:18784284-18784303 | MS.gene38825:CDS | 55.0% |
| ! | TTTTACCCGTTGGACCAGCC+GGG | + | chr7.4:18784293-18784312 | None:intergenic | 55.0% |
| !! | CTGAACCGGATGGGTTGACT+CGG | + | chr7.4:18782199-18782218 | None:intergenic | 55.0% |
| !! | GGGTTGACTCGGTTTCCTGA+TGG | + | chr7.4:18782188-18782207 | None:intergenic | 55.0% |
| !! | TGGTGAGGATGATGGTGGTG+AGG | + | chr7.4:18784054-18784073 | None:intergenic | 55.0% |
| CAGCGGTGAGATGGTCGTGA+TGG | + | chr7.4:18784074-18784093 | None:intergenic | 60.0% | |
| CCAGACCTAGCTGAACCGGA+TGG | + | chr7.4:18782209-18782228 | None:intergenic | 60.0% | |
| CCATCCGGTTCAGCTAGGTC+TGG | - | chr7.4:18782206-18782225 | MS.gene38825:CDS | 60.0% | |
| CTCGACGTCTGAGGAGTCGA+GGG | + | chr7.4:18784139-18784158 | None:intergenic | 60.0% | |
| GCCGATGTTAACTTCCCGGC+TGG | - | chr7.4:18784276-18784295 | MS.gene38825:CDS | 60.0% | |
| GGCTGCACCGAGTTCCAACA+AGG | + | chr7.4:18784259-18784278 | None:intergenic | 60.0% | |
| GTCTTCAAGGTCGGCTGCAG+CGG | + | chr7.4:18784091-18784110 | None:intergenic | 60.0% | |
| TGCAGCGGAGATGGTCTCAC+CGG | - | chr7.4:18784326-18784345 | MS.gene38825:CDS | 60.0% | |
| ! | AACTTCCCGGCTGGTCCAAC+GGG | - | chr7.4:18784285-18784304 | MS.gene38825:CDS | 60.0% |
| CGAGGGCTCGTCTCATCCGA+CGG | + | chr7.4:18784122-18784141 | None:intergenic | 65.0% | |
| GCTCGACGTCTGAGGAGTCG+AGG | + | chr7.4:18784140-18784159 | None:intergenic | 65.0% | |
| TGTGGGCCAGACCCACCTTC+TGG | - | chr7.4:18782155-18782174 | MS.gene38825:CDS | 65.0% | |
| GGTCGGCTGCAGCGGTGAGA+TGG | + | chr7.4:18784083-18784102 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 18781993 | 18784459 | 18781993 | ID=MS.gene38825 |
| chr7.4 | mRNA | 18781993 | 18784459 | 18781993 | ID=MS.gene38825.t1;Parent=MS.gene38825 |
| chr7.4 | exon | 18784001 | 18784459 | 18784001 | ID=MS.gene38825.t1.exon1;Parent=MS.gene38825.t1 |
| chr7.4 | CDS | 18784001 | 18784459 | 18784001 | ID=cds.MS.gene38825.t1;Parent=MS.gene38825.t1 |
| chr7.4 | exon | 18781993 | 18782626 | 18781993 | ID=MS.gene38825.t1.exon2;Parent=MS.gene38825.t1 |
| chr7.4 | CDS | 18781993 | 18782626 | 18781993 | ID=cds.MS.gene38825.t1;Parent=MS.gene38825.t1 |
| Gene Sequence |
| Protein sequence |
