AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene38863

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38863.t1 MTR_8g051580 94.475 181 10 0 1 181 1 181 3.08e-124 347
MS.gene38863.t1 MTR_1g047550 59.429 175 71 0 1 175 1 175 1.14e-72 217
MS.gene38863.t1 MTR_8g046350 63.314 169 56 2 1 169 1 163 3.00e-69 207
MS.gene38863.t1 MTR_1g063160 56.000 175 77 0 1 175 1 175 1.84e-68 206
MS.gene38863.t1 MTR_1g054265 58.333 168 70 0 1 168 1 168 8.94e-67 201
MS.gene38863.t1 MTR_8g079502 57.831 166 70 0 1 166 1 166 8.01e-66 199
MS.gene38863.t1 MTR_4g131030 52.941 187 71 1 1 170 1 187 8.89e-65 198
MS.gene38863.t1 MTR_4g094632 39.881 168 81 5 1 164 1 152 6.05e-29 105
MS.gene38863.t1 MTR_3g080940 43.902 123 59 2 1 117 8 126 4.44e-25 96.7
MS.gene38863.t1 MTR_1g106070 46.535 101 52 1 2 100 9 109 1.18e-24 95.1
MS.gene38863.t1 MTR_3g052870 38.621 145 71 3 2 142 9 139 7.20e-24 94.0
MS.gene38863.t1 MTR_2g105290 43.269 104 57 1 1 104 11 112 8.25e-24 92.4
MS.gene38863.t1 MTR_5g045560 43.925 107 58 1 1 107 8 112 1.36e-23 93.6
MS.gene38863.t1 MTR_8g086290 40.777 103 59 1 2 104 12 112 2.31e-23 91.7
MS.gene38863.t1 MTR_1g105920 46.535 101 52 1 2 100 9 109 4.43e-23 92.0
MS.gene38863.t1 MTR_3g052920 57.971 69 29 0 2 70 9 77 4.64e-23 92.0
MS.gene38863.t1 MTR_1g108580 37.580 157 80 3 2 143 9 162 7.29e-23 91.3
MS.gene38863.t1 MTR_1g105910 40.361 166 66 7 2 166 9 142 3.25e-22 90.1
MS.gene38863.t1 MTR_4g094638 42.056 107 59 1 1 104 1 107 3.34e-22 88.6
MS.gene38863.t1 MTR_2g030740 57.971 69 29 0 2 70 9 77 5.38e-22 89.4
MS.gene38863.t1 MTR_5g053390 35.897 156 84 3 2 143 9 162 1.08e-21 88.6
MS.gene38863.t1 MTR_3g030770 56.522 69 30 0 2 70 9 77 1.21e-21 88.2
MS.gene38863.t1 MTR_8g043650 56.522 69 30 0 2 70 9 77 1.40e-21 88.2
MS.gene38863.t1 MTR_1g108510 56.522 69 30 0 2 70 9 77 1.41e-21 88.2
MS.gene38863.t1 MTR_1g012570 55.072 69 31 0 2 70 9 77 2.92e-21 87.4
MS.gene38863.t1 MTR_1g077360 50.633 79 39 0 2 80 9 87 3.46e-21 87.4
MS.gene38863.t1 MTR_2g093190 37.580 157 80 3 2 143 9 162 4.50e-21 86.7
MS.gene38863.t1 MTR_5g055100 45.918 98 40 1 2 99 9 93 5.26e-21 86.7
MS.gene38863.t1 MTR_0121s0100 42.017 119 64 2 2 120 9 122 5.72e-21 84.0
MS.gene38863.t1 MTR_1g075600 56.522 69 30 0 2 70 9 77 1.05e-20 85.9
MS.gene38863.t1 MTR_7g028448 37.600 125 76 2 17 140 27 150 1.09e-20 84.3
MS.gene38863.t1 MTR_4g036915 37.600 125 76 2 17 140 27 150 1.09e-20 84.3
MS.gene38863.t1 MTR_2g085280 34.146 164 92 4 2 151 9 170 1.70e-20 85.5
MS.gene38863.t1 MTR_2g085250 34.146 164 92 4 2 151 9 170 1.87e-20 85.1
MS.gene38863.t1 MTR_3g030780 50.725 69 34 0 2 70 9 77 6.04e-20 81.3
MS.gene38863.t1 MTR_0121s0080 53.521 71 33 0 2 72 9 79 1.11e-19 83.2
MS.gene38863.t1 MTR_1g105905 64.151 53 19 0 18 70 8 60 1.44e-18 80.1
MS.gene38863.t1 MTR_7g062350 58.333 60 25 0 13 72 32 91 1.91e-18 80.1
MS.gene38863.t1 MTR_2g017865 35.115 131 81 2 1 130 16 143 3.91e-18 79.7
MS.gene38863.t1 MTR_2g009890 52.174 69 33 0 1 69 1 69 7.92e-18 79.0
MS.gene38863.t1 MTR_5g066180 46.377 69 37 0 1 69 1 69 1.11e-17 77.8
MS.gene38863.t1 MTR_4g127140 48.101 79 41 0 1 79 11 89 1.21e-17 76.6
MS.gene38863.t1 MTR_1g053070 45.570 79 43 0 1 79 1 79 1.28e-17 77.8
MS.gene38863.t1 MTR_5g031000 50.725 69 34 0 1 69 1 69 1.66e-17 77.4
MS.gene38863.t1 MTR_5g031000 50.725 69 34 0 1 69 1 69 1.90e-17 77.0
MS.gene38863.t1 MTR_4g084740 34.225 187 105 8 1 175 1 181 2.14e-17 78.6
MS.gene38863.t1 MTR_3g113030 37.778 135 77 3 1 134 1 129 3.21e-17 76.6
MS.gene38863.t1 MTR_0003s0590 50.725 69 34 0 1 69 1 69 3.46e-17 77.0
MS.gene38863.t1 MTR_1g101970 42.667 75 43 0 1 75 1 75 3.76e-17 75.5
MS.gene38863.t1 MTR_5g046790 46.479 71 35 1 1 71 1 68 5.97e-17 75.5
MS.gene38863.t1 MTR_3g067875 62.500 48 18 0 18 65 8 55 7.56e-17 71.6
MS.gene38863.t1 MTR_5g066960 56.667 60 26 0 1 60 1 60 8.08e-17 71.2
MS.gene38863.t1 MTR_4g093970 37.857 140 71 3 1 132 27 158 1.07e-16 75.5
MS.gene38863.t1 MTR_8g033270 44.000 75 42 0 1 75 1 75 1.08e-16 75.5
MS.gene38863.t1 MTR_8g087860 35.714 112 69 1 1 112 17 125 1.11e-16 75.5
MS.gene38863.t1 MTR_8g033220 36.538 104 64 2 1 104 1 102 1.24e-16 74.7
MS.gene38863.t1 MTR_7g075870 46.377 69 37 0 1 69 1 69 1.41e-16 74.3
MS.gene38863.t1 MTR_8g033220 36.538 104 64 2 1 104 1 102 1.78e-16 74.7
MS.gene38863.t1 MTR_3g452380 49.275 69 35 0 1 69 16 84 2.20e-16 74.7
MS.gene38863.t1 MTR_1g108500 56.667 60 26 0 18 77 113 172 2.36e-16 75.5
MS.gene38863.t1 MTR_8g066260 46.479 71 35 1 1 71 1 68 4.87e-16 73.6
MS.gene38863.t1 MTR_3g005530 44.928 69 38 0 1 69 1 69 5.20e-16 73.2
MS.gene38863.t1 MTR_2g461710 50.877 57 28 0 1 57 1 57 7.76e-16 68.6
MS.gene38863.t1 MTR_4g109830 46.479 71 35 1 1 71 1 68 8.56e-16 72.8
MS.gene38863.t1 MTR_5g021270 48.387 62 32 0 1 62 1 62 9.85e-16 72.8
MS.gene38863.t1 MTR_5g021270 48.387 62 32 0 1 62 1 62 9.89e-16 72.8
MS.gene38863.t1 MTR_7g016600 50.820 61 30 0 1 61 1 61 1.04e-15 72.8
MS.gene38863.t1 MTR_4g102530 46.377 69 37 0 1 69 1 69 1.22e-15 72.0
MS.gene38863.t1 MTR_7g075870 47.143 70 36 1 1 69 1 70 1.95e-15 71.6
MS.gene38863.t1 MTR_5g046870 52.632 57 27 0 1 57 1 57 2.37e-15 68.9
MS.gene38863.t1 MTR_6g464720 31.655 139 85 4 1 134 1 134 2.44e-15 72.0
MS.gene38863.t1 MTR_8g097090 35.119 168 92 6 1 157 1 162 3.12e-15 71.2
MS.gene38863.t1 MTR_7g016630 41.429 70 40 1 1 69 1 70 3.40e-15 71.6
MS.gene38863.t1 MTR_3g084980 52.459 61 29 0 1 61 1 61 4.92e-15 70.9
MS.gene38863.t1 MTR_6g015975 50.794 63 30 1 1 62 1 63 7.07e-15 70.5
MS.gene38863.t1 MTR_5g032520 44.615 65 36 0 1 65 1 65 7.21e-15 70.1
MS.gene38863.t1 MTR_4g036050 54.545 55 25 0 1 55 1 55 8.40e-15 69.3
MS.gene38863.t1 MTR_4g093030 50.794 63 31 0 1 63 1 63 8.50e-15 68.6
MS.gene38863.t1 MTR_4g036050 54.545 55 25 0 1 55 1 55 8.57e-15 69.3
MS.gene38863.t1 MTR_4g036050 54.545 55 25 0 1 55 1 55 8.65e-15 68.9
MS.gene38863.t1 MTR_4g036050 54.545 55 25 0 1 55 1 55 8.79e-15 69.7
MS.gene38863.t1 MTR_5g032150 44.615 65 36 0 1 65 1 65 9.75e-15 69.7
MS.gene38863.t1 MTR_4g109810 46.774 62 33 0 1 62 1 62 1.79e-14 69.3
MS.gene38863.t1 MTR_3g067910 50.943 53 26 0 18 70 6 58 1.90e-14 66.2
MS.gene38863.t1 MTR_1g038300 43.662 71 38 1 1 69 1 71 1.97e-14 68.9
MS.gene38863.t1 MTR_7g075850 50.820 61 30 0 1 61 1 61 2.19e-14 69.3
MS.gene38863.t1 MTR_3g102570 35.526 152 77 9 1 151 1 132 5.73e-14 68.9
MS.gene38863.t1 MTR_1g029670 41.935 62 36 0 1 62 1 62 1.77e-13 65.5
MS.gene38863.t1 MTR_3g088615 41.935 62 36 0 1 62 1 62 2.48e-13 65.1
MS.gene38863.t1 MTR_1g041615 66.667 42 14 0 17 58 21 62 5.18e-13 63.2
MS.gene38863.t1 MTR_5g041650 29.762 168 87 4 1 140 38 202 5.61e-13 66.2
MS.gene38863.t1 MTR_3g067870 56.250 48 21 0 18 65 92 139 7.05e-13 63.5
MS.gene38863.t1 MTR_3g437790 34.459 148 58 5 19 140 30 164 1.54e-12 63.2
MS.gene38863.t1 MTR_4g108720 28.743 167 88 4 1 139 1 164 5.24e-12 63.5
MS.gene38863.t1 MTR_3g109930 43.860 57 32 0 17 73 17 73 3.29e-11 59.3
MS.gene38863.t1 MTR_8g022970 48.148 54 28 0 20 73 36 89 3.84e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38863.t1 AT2G34440 42.197 173 88 4 1 162 1 172 4.89e-33 116
MS.gene38863.t1 AT3G66656 40.341 176 88 4 1 160 1 175 1.27e-30 110
MS.gene38863.t1 AT2G24840 37.805 164 87 4 1 150 62 224 2.92e-30 111
MS.gene38863.t1 AT5G60440 43.558 163 65 6 2 143 7 163 2.03e-27 105
MS.gene38863.t1 AT1G01530 46.018 113 58 3 1 112 6 116 8.66e-23 91.7
MS.gene38863.t1 AT1G47760 55.882 68 30 0 1 68 1 68 3.57e-22 88.6
MS.gene38863.t1 AT4G36590 57.353 68 29 0 2 69 7 74 1.17e-20 86.3
MS.gene38863.t1 AT3G57230 47.674 86 38 1 1 86 1 79 1.34e-20 83.6
MS.gene38863.t1 AT3G57230 47.674 86 38 1 1 86 1 79 3.60e-20 84.7
MS.gene38863.t1 AT3G57230 47.674 86 38 1 1 86 1 79 3.60e-20 84.7
MS.gene38863.t1 AT1G65360 53.623 69 32 0 1 69 6 74 8.15e-20 83.6
MS.gene38863.t1 AT2G22630 53.623 69 32 0 1 69 1 69 2.65e-19 82.0
MS.gene38863.t1 AT2G22630 53.623 69 32 0 1 69 1 69 2.65e-19 82.0
MS.gene38863.t1 AT4G37940 53.623 69 32 0 1 69 1 69 4.51e-19 81.6
MS.gene38863.t1 AT4G37940 53.623 69 32 0 1 69 1 69 6.28e-19 80.9
MS.gene38863.t1 AT3G61120 44.872 78 43 0 1 78 1 78 9.66e-19 80.9
MS.gene38863.t1 AT4G37940 53.623 69 32 0 1 69 1 69 1.24e-18 79.3
MS.gene38863.t1 AT1G29962 48.611 72 37 0 2 73 8 79 1.43e-18 79.3
MS.gene38863.t1 AT3G04100 36.691 139 65 3 2 135 14 134 2.92e-18 79.0
MS.gene38863.t1 AT1G28460 47.222 72 38 0 2 73 8 79 4.92e-18 77.8
MS.gene38863.t1 AT1G71692 42.553 94 50 2 1 93 1 91 1.88e-17 77.0
MS.gene38863.t1 AT2G45660 33.036 112 72 1 1 112 1 109 2.09e-17 75.5
MS.gene38863.t1 AT2G03710 35.088 171 89 6 1 158 1 162 2.31e-17 76.3
MS.gene38863.t1 AT4G24540 35.088 114 70 1 1 110 1 114 5.29e-17 75.9
MS.gene38863.t1 AT5G13790 40.741 108 53 2 1 106 1 99 5.72e-17 76.6
MS.gene38863.t1 AT5G15800 34.320 169 93 4 1 158 1 162 5.77e-17 76.3
MS.gene38863.t1 AT2G45650 46.377 69 37 0 1 69 1 69 5.91e-17 76.3
MS.gene38863.t1 AT5G15800 34.320 169 93 4 1 158 1 162 6.18e-17 76.3
MS.gene38863.t1 AT2G45660 45.714 70 38 0 1 70 1 70 6.73e-17 75.5
MS.gene38863.t1 AT3G57390 47.826 69 36 0 1 69 1 69 8.53e-17 75.5
MS.gene38863.t1 AT4G22950 47.826 69 36 0 1 69 1 69 9.24e-17 74.3
MS.gene38863.t1 AT1G72350 53.623 69 30 1 2 70 43 109 9.40e-17 75.1
MS.gene38863.t1 AT1G69120 49.296 71 33 1 1 71 1 68 1.04e-16 75.5
MS.gene38863.t1 AT5G13790 40.367 109 55 3 1 106 1 102 1.05e-16 75.9
MS.gene38863.t1 AT4G09960 33.929 112 71 1 1 112 2 110 1.35e-16 75.1
MS.gene38863.t1 AT4G09960 33.929 112 71 1 1 112 1 109 1.38e-16 74.7
MS.gene38863.t1 AT4G09960 33.929 112 71 1 1 112 1 109 1.41e-16 74.7
MS.gene38863.t1 AT2G03710 35.088 171 89 6 1 158 1 162 1.54e-16 75.1
MS.gene38863.t1 AT2G03710 35.088 171 89 6 1 158 1 162 1.65e-16 75.1
MS.gene38863.t1 AT3G57390 47.826 69 36 0 1 69 1 69 1.69e-16 75.1
MS.gene38863.t1 AT4G09960 33.929 112 71 1 1 112 11 119 1.73e-16 74.7
MS.gene38863.t1 AT1G26310 30.667 150 102 1 1 150 1 148 1.74e-16 75.1
MS.gene38863.t1 AT4G09960 33.929 112 71 1 1 112 27 135 2.06e-16 74.7
MS.gene38863.t1 AT3G58780 31.169 154 101 2 1 154 16 164 2.41e-16 74.7
MS.gene38863.t1 AT2G22540 49.231 65 33 0 1 65 1 65 2.46e-16 74.3
MS.gene38863.t1 AT2G22540 49.231 65 33 0 1 65 1 65 2.46e-16 74.3
MS.gene38863.t1 AT3G58780 31.169 154 101 2 1 154 22 170 2.70e-16 74.7
MS.gene38863.t1 AT1G69120 49.296 71 33 1 1 71 1 68 2.77e-16 74.7
MS.gene38863.t1 AT1G24260 35.503 169 92 5 1 157 1 164 2.99e-16 74.3
MS.gene38863.t1 AT4G09960 33.929 112 71 1 1 112 96 204 3.22e-16 75.1
MS.gene38863.t1 AT2G14210 54.098 61 28 0 1 61 1 61 3.29e-16 73.9
MS.gene38863.t1 AT5G60910 46.479 71 35 1 1 71 1 68 3.86e-16 73.9
MS.gene38863.t1 AT3G02310 34.857 175 96 5 1 164 1 168 3.93e-16 73.2
MS.gene38863.t1 AT1G22130 50.704 71 34 1 1 70 1 71 3.97e-16 75.1
MS.gene38863.t1 AT3G58780 34.821 112 70 1 1 112 16 124 4.09e-16 74.3
MS.gene38863.t1 AT2G14210 54.098 61 28 0 1 61 1 61 4.56e-16 73.6
MS.gene38863.t1 AT3G30260 54.386 57 26 0 1 57 1 57 5.61e-16 73.6
MS.gene38863.t1 AT4G22950 47.826 69 36 0 1 69 1 69 6.41e-16 72.8
MS.gene38863.t1 AT4G22950 47.826 69 36 0 1 69 1 69 6.41e-16 72.8
MS.gene38863.t1 AT3G54340 50.000 62 31 0 1 62 1 62 1.05e-15 72.8
MS.gene38863.t1 AT3G02310 34.857 175 96 6 1 164 1 168 1.16e-15 72.8
MS.gene38863.t1 AT4G11880 35.897 117 50 2 1 116 1 93 1.24e-15 71.2
MS.gene38863.t1 AT4G11880 35.897 117 50 2 1 116 1 93 1.24e-15 71.2
MS.gene38863.t1 AT1G77980 48.101 79 36 2 1 78 1 75 1.30e-15 73.6
MS.gene38863.t1 AT4G18960 34.615 130 81 2 2 130 18 144 1.38e-15 72.8
MS.gene38863.t1 AT1G24260 35.882 170 89 7 1 157 1 163 1.43e-15 72.4
MS.gene38863.t1 AT2G42830 46.377 69 37 0 1 69 16 84 1.53e-15 72.4
MS.gene38863.t1 AT2G42830 46.377 69 37 0 1 69 16 84 1.64e-15 72.4
MS.gene38863.t1 AT1G46408 50.633 79 33 3 1 73 1 79 1.91e-15 72.4
MS.gene38863.t1 AT5G65070 35.115 131 79 3 1 127 1 129 2.09e-15 70.1
MS.gene38863.t1 AT5G51860 43.662 71 40 0 1 71 1 71 2.88e-15 70.9
MS.gene38863.t1 AT5G51860 43.662 71 40 0 1 71 1 71 3.11e-15 70.9
MS.gene38863.t1 AT4G11880 35.897 117 50 2 1 116 1 93 4.34e-15 70.9
MS.gene38863.t1 AT4G11880 35.897 117 50 2 1 116 1 93 4.34e-15 70.9
MS.gene38863.t1 AT5G10140 52.632 57 27 0 1 57 1 57 5.03e-15 69.3
MS.gene38863.t1 AT5G65070 35.115 131 79 3 1 127 1 129 6.06e-15 70.1
MS.gene38863.t1 AT5G10140 52.632 57 27 0 1 57 1 57 6.39e-15 69.7
MS.gene38863.t1 AT5G65070 43.590 78 41 2 1 76 1 77 7.16e-15 70.5
MS.gene38863.t1 AT5G51870 42.029 69 40 0 1 69 1 69 7.25e-15 69.7
MS.gene38863.t1 AT1G24260 41.935 93 49 1 1 93 1 88 8.08e-15 70.5
MS.gene38863.t1 AT5G10140 52.632 57 27 0 1 57 1 57 8.40e-15 69.3
MS.gene38863.t1 AT5G10140 51.724 58 28 0 1 58 1 58 1.04e-14 68.9
MS.gene38863.t1 AT5G51870 42.029 69 40 0 1 69 1 69 1.38e-14 68.6
MS.gene38863.t1 AT3G58780 39.535 86 39 1 1 73 16 101 1.39e-14 69.7
MS.gene38863.t1 AT5G51870 42.029 69 40 0 1 69 1 69 1.48e-14 69.3
MS.gene38863.t1 AT1G28450 43.056 72 41 0 2 73 8 79 1.54e-14 68.6
MS.gene38863.t1 AT5G51870 42.029 69 40 0 1 69 24 92 2.04e-14 68.6
MS.gene38863.t1 AT2G22540 50.877 57 28 0 1 57 1 57 2.04e-14 69.3
MS.gene38863.t1 AT5G51870 42.029 69 40 0 1 69 11 79 2.04e-14 68.9
MS.gene38863.t1 AT5G20240 47.619 63 33 0 1 63 1 63 2.24e-14 67.4
MS.gene38863.t1 AT3G58780 50.820 61 30 0 1 61 16 76 2.33e-14 69.7
MS.gene38863.t1 AT1G18750 28.977 176 84 4 1 138 1 173 2.51e-14 70.1
MS.gene38863.t1 AT1G18750 28.977 176 84 4 1 138 1 173 2.78e-14 70.1
MS.gene38863.t1 AT5G65070 42.857 70 39 1 1 69 1 70 3.83e-14 68.6
MS.gene38863.t1 AT5G20240 47.619 63 33 0 1 63 1 63 3.93e-14 67.8
MS.gene38863.t1 AT4G37435 28.249 177 94 4 1 150 1 171 4.72e-14 67.4
MS.gene38863.t1 AT5G49490 41.176 102 45 2 3 100 46 136 5.88e-14 68.6
MS.gene38863.t1 AT5G23260 34.731 167 91 7 1 157 1 159 7.69e-14 67.8
MS.gene38863.t1 AT5G65070 48.276 58 30 0 1 58 1 58 8.34e-14 67.0
MS.gene38863.t1 AT5G23260 56.140 57 25 0 1 57 17 73 8.48e-14 67.8
MS.gene38863.t1 AT5G23260 56.140 57 25 0 1 57 17 73 9.01e-14 67.8
MS.gene38863.t1 AT5G65050 52.727 55 26 0 1 55 1 55 9.79e-14 66.2
MS.gene38863.t1 AT5G23260 36.129 155 85 6 1 149 1 147 1.02e-13 67.4
MS.gene38863.t1 AT5G62165 39.130 69 42 0 1 69 1 69 1.26e-13 65.5
MS.gene38863.t1 AT5G62165 39.130 69 42 0 1 69 1 69 1.26e-13 65.5
MS.gene38863.t1 AT5G62165 39.130 69 42 0 1 69 1 69 1.26e-13 65.5
MS.gene38863.t1 AT5G65080 44.286 70 38 1 1 69 8 77 1.75e-13 65.9
MS.gene38863.t1 AT5G65060 54.545 55 25 0 1 55 1 55 1.82e-13 65.9
MS.gene38863.t1 AT1G17310 57.407 54 21 1 17 70 63 114 2.26e-13 66.2
MS.gene38863.t1 AT5G65060 54.545 55 25 0 1 55 1 55 2.31e-13 65.5
MS.gene38863.t1 AT1G17310 57.407 54 21 1 17 70 74 125 2.62e-13 66.2
MS.gene38863.t1 AT5G65060 54.545 55 25 0 1 55 1 55 2.62e-13 65.5
MS.gene38863.t1 AT5G62165 39.130 69 42 0 1 69 1 69 2.64e-13 64.7
MS.gene38863.t1 AT5G62165 39.130 69 42 0 1 69 1 69 2.64e-13 64.7
MS.gene38863.t1 AT5G62165 39.130 69 42 0 1 69 1 69 2.64e-13 64.7
MS.gene38863.t1 AT5G62165 39.130 69 42 0 1 69 1 69 2.64e-13 64.7
MS.gene38863.t1 AT5G62165 39.130 69 42 0 1 69 1 69 2.64e-13 64.7
MS.gene38863.t1 AT5G62165 39.130 69 42 0 1 69 1 69 2.75e-13 65.9
MS.gene38863.t1 AT5G62165 39.130 69 42 0 1 69 1 69 2.75e-13 65.9
MS.gene38863.t1 AT5G62165 39.130 69 42 0 1 69 1 69 2.75e-13 65.9
MS.gene38863.t1 AT5G62165 30.693 101 59 1 1 90 1 101 2.77e-13 63.5
MS.gene38863.t1 AT1G77950 40.845 71 41 1 1 70 1 71 3.20e-13 66.2
MS.gene38863.t1 AT1G77950 40.845 71 41 1 1 70 1 71 3.20e-13 66.2
MS.gene38863.t1 AT1G77950 40.845 71 41 1 1 70 1 71 3.20e-13 66.2
MS.gene38863.t1 AT1G77950 40.845 71 41 1 1 70 1 71 3.20e-13 66.2
MS.gene38863.t1 AT5G62165 39.130 69 42 0 1 69 1 69 3.24e-13 65.1
MS.gene38863.t1 AT5G62165 39.130 69 42 0 1 69 1 69 3.24e-13 65.1
MS.gene38863.t1 AT5G65050 52.727 55 26 0 1 55 1 55 3.28e-13 65.1
MS.gene38863.t1 AT5G65050 52.727 55 26 0 1 55 1 55 3.84e-13 64.7
MS.gene38863.t1 AT5G65050 52.727 55 26 0 1 55 1 55 3.97e-13 64.7
MS.gene38863.t1 AT1G18750 43.662 71 38 1 1 69 1 71 5.23e-13 66.6
MS.gene38863.t1 AT5G65080 48.214 56 29 0 1 56 8 63 8.97e-13 64.3
MS.gene38863.t1 AT1G60920 43.421 76 38 2 3 73 5 80 1.05e-12 63.9
MS.gene38863.t1 AT1G31140 30.476 105 68 2 1 100 1 105 2.83e-12 63.2
MS.gene38863.t1 AT5G49420 45.333 75 37 1 3 73 8 82 3.06e-12 63.9
MS.gene38863.t1 AT5G38620 45.946 74 36 1 3 72 6 79 4.70e-12 63.5
MS.gene38863.t1 AT2G26320 45.902 61 33 0 1 61 17 77 8.82e-12 59.3
MS.gene38863.t1 AT1G69540 41.429 70 40 1 1 69 1 70 1.54e-11 62.0
MS.gene38863.t1 AT1G69540 41.429 70 40 1 1 69 1 70 2.25e-11 61.6
MS.gene38863.t1 AT5G04640 41.333 75 40 1 3 73 5 79 2.84e-11 61.2
MS.gene38863.t1 AT2G03060 33.083 133 59 4 1 106 1 130 3.08e-11 61.2
MS.gene38863.t1 AT2G03060 33.083 133 59 4 1 106 1 130 3.70e-11 61.2
MS.gene38863.t1 AT2G03060 33.083 133 59 4 1 106 1 130 3.70e-11 61.2
MS.gene38863.t1 AT2G03060 33.083 133 59 4 1 106 1 130 3.70e-11 61.2

Find 44 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTCTCCTTCAAGAAATT+TGG 0.179978 8.4:-51716927 None:intergenic
GGAATAAGCCTTACTCTTTC+GGG 0.222535 8.4:+51716879 MS.gene38863:CDS
GGGAATAAGCCTTACTCTTT+CGG 0.264231 8.4:+51716878 MS.gene38863:CDS
CAGTTGGTTTGTATTCTTCT+AGG 0.270957 8.4:-51717078 None:intergenic
TGATTCAGATCCTCTCTGTT+TGG 0.338080 8.4:-51716989 None:intergenic
GCTATTGTTGTGTTCTCCCC+TGG 0.368488 8.4:+51716857 MS.gene38863:CDS
AGGATTTGAAAGATTCATAT+CGG 0.405934 8.4:+51717116 MS.gene38863:CDS
ACATTCTCTAAGCGTCGAAC+AGG 0.429261 8.4:+51716785 MS.gene38863:CDS
CTATTGTTGTGTTCTCCCCT+GGG 0.431123 8.4:+51716858 MS.gene38863:CDS
GTTACTTCTTGCAGAGAAAC+CGG 0.436314 8.4:+51717195 MS.gene38863:CDS
ATATCGGAAATTGAAGGAAA+TGG 0.440694 8.4:+51717132 MS.gene38863:CDS
GTTGCATCCAAATTTCTTGA+AGG 0.449324 8.4:+51716920 MS.gene38863:CDS
AATGTAACCTGCCTTATGAT+AGG 0.459002 8.4:-51716767 None:intergenic
AACAAAGTCGCAAGAAAGAA+AGG 0.460568 8.4:+51717232 MS.gene38863:CDS
ATGAACTTGCCATCTTGTGC+GGG 0.468340 8.4:+51716825 MS.gene38863:CDS
CTTGGGTGCCCGAAAGAGTA+AGG 0.491836 8.4:-51716887 None:intergenic
TCAAGTTGAGTGAGTTCAGT+TGG 0.504549 8.4:-51717094 None:intergenic
AGCTTCCTATGCCATCATCT+AGG 0.527794 8.4:-51716952 None:intergenic
AAAGAGTAAGGCTTATTCCC+AGG 0.528202 8.4:-51716875 None:intergenic
ACTAAAGGAGGCTGAAAATG+AGG 0.533793 8.4:+51717036 MS.gene38863:CDS
AATGAACTTGCCATCTTGTG+CGG 0.538350 8.4:+51716824 MS.gene38863:CDS
AACTGAACTCACTCAACTTG+AGG 0.538837 8.4:+51717096 MS.gene38863:CDS
ATGTAACCTGCCTTATGATA+GGG 0.543825 8.4:-51716766 None:intergenic
GGGTGAGAGACCCTATCATA+AGG 0.546640 8.4:+51716756 MS.gene38863:CDS
GATGCAACATCATCAACACT+TGG 0.549337 8.4:-51716905 None:intergenic
AATTTCTGCCCCGCACAAGA+TGG 0.555860 8.4:-51716834 None:intergenic
CTTGCAGAGAAACCGGTGGT+TGG 0.563786 8.4:+51717202 MS.gene38863:CDS
GGAGAGCTCAACCTAGATGA+TGG 0.566220 8.4:+51716941 MS.gene38863:CDS
AGGAGGCTGAAAATGAGGCT+AGG 0.567676 8.4:+51717041 MS.gene38863:CDS
GGAGGCTGAAAATGAGGCTA+GGG 0.569979 8.4:+51717042 MS.gene38863:CDS
GTCGCAAAATTGCGATTGCG+AGG 0.570735 8.4:+51716735 MS.gene38863:CDS
GAGAGACCCTATCATAAGGC+AGG 0.574297 8.4:+51716760 MS.gene38863:CDS
AAGAGTAAGGCTTATTCCCA+GGG 0.598555 8.4:-51716874 None:intergenic
AGATGTGCTAGCTCAACTAA+AGG 0.611567 8.4:+51717021 MS.gene38863:CDS
AGATTCATATCGGAAATTGA+AGG 0.637344 8.4:+51717126 MS.gene38863:CDS
TCGCAAAATTGCGATTGCGA+GGG 0.641127 8.4:+51716736 MS.gene38863:CDS
TGTGCTAGCTCAACTAAAGG+AGG 0.641632 8.4:+51717024 MS.gene38863:CDS
TCGAACAGGATTATTCAAGA+AGG 0.647981 8.4:+51716799 MS.gene38863:CDS
CTCAACCTAGATGATGGCAT+AGG 0.656307 8.4:+51716947 MS.gene38863:CDS
ATGCAACATCATCAACACTT+GGG 0.663273 8.4:-51716904 None:intergenic
TGAACTTGCCATCTTGTGCG+GGG 0.674850 8.4:+51716826 MS.gene38863:CDS
TTCTGAAGTTCCAAACAGAG+AGG 0.695196 8.4:+51716979 MS.gene38863:CDS
ACTTCTTGCAGAGAAACCGG+TGG 0.709944 8.4:+51717198 MS.gene38863:CDS
AGAGTAAGGCTTATTCCCAG+GGG 0.760036 8.4:-51716873 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGGATTTGAAAGATTCATAT+CGG + chr8.4:51717116-51717135 MS.gene38863:CDS 25.0%
AGATTCATATCGGAAATTGA+AGG + chr8.4:51717126-51717145 MS.gene38863:CDS 30.0%
ATATCGGAAATTGAAGGAAA+TGG + chr8.4:51717132-51717151 MS.gene38863:CDS 30.0%
AACAAAGTCGCAAGAAAGAA+AGG + chr8.4:51717232-51717251 MS.gene38863:CDS 35.0%
AATGTAACCTGCCTTATGAT+AGG - chr8.4:51716770-51716789 None:intergenic 35.0%
ATGCAACATCATCAACACTT+GGG - chr8.4:51716907-51716926 None:intergenic 35.0%
ATGTAACCTGCCTTATGATA+GGG - chr8.4:51716769-51716788 None:intergenic 35.0%
GTTGCATCCAAATTTCTTGA+AGG + chr8.4:51716920-51716939 MS.gene38863:CDS 35.0%
TCGAACAGGATTATTCAAGA+AGG + chr8.4:51716799-51716818 MS.gene38863:CDS 35.0%
!! CAGTTGGTTTGTATTCTTCT+AGG - chr8.4:51717081-51717100 None:intergenic 35.0%
!!! TTGTTTTTTGTTCCAACCAC+CGG - chr8.4:51717217-51717236 None:intergenic 35.0%
AAAGAGTAAGGCTTATTCCC+AGG - chr8.4:51716878-51716897 None:intergenic 40.0%
AACTGAACTCACTCAACTTG+AGG + chr8.4:51717096-51717115 MS.gene38863:CDS 40.0%
AAGAGTAAGGCTTATTCCCA+GGG - chr8.4:51716877-51716896 None:intergenic 40.0%
AATGAACTTGCCATCTTGTG+CGG + chr8.4:51716824-51716843 MS.gene38863:CDS 40.0%
ACTAAAGGAGGCTGAAAATG+AGG + chr8.4:51717036-51717055 MS.gene38863:CDS 40.0%
AGATGTGCTAGCTCAACTAA+AGG + chr8.4:51717021-51717040 MS.gene38863:CDS 40.0%
GAGCTCTCCTTCAAGAAATT+TGG - chr8.4:51716930-51716949 None:intergenic 40.0%
GATGCAACATCATCAACACT+TGG - chr8.4:51716908-51716927 None:intergenic 40.0%
GGAATAAGCCTTACTCTTTC+GGG + chr8.4:51716879-51716898 MS.gene38863:CDS 40.0%
GGGAATAAGCCTTACTCTTT+CGG + chr8.4:51716878-51716897 MS.gene38863:CDS 40.0%
GTTACTTCTTGCAGAGAAAC+CGG + chr8.4:51717195-51717214 MS.gene38863:CDS 40.0%
TGATTCAGATCCTCTCTGTT+TGG - chr8.4:51716992-51717011 None:intergenic 40.0%
!! TCAAGTTGAGTGAGTTCAGT+TGG - chr8.4:51717097-51717116 None:intergenic 40.0%
!! TTCTGAAGTTCCAAACAGAG+AGG + chr8.4:51716979-51716998 MS.gene38863:CDS 40.0%
AGAGTAAGGCTTATTCCCAG+GGG - chr8.4:51716876-51716895 None:intergenic 45.0%
AGCTTCCTATGCCATCATCT+AGG - chr8.4:51716955-51716974 None:intergenic 45.0%
ATGAACTTGCCATCTTGTGC+GGG + chr8.4:51716825-51716844 MS.gene38863:CDS 45.0%
CTATTGTTGTGTTCTCCCCT+GGG + chr8.4:51716858-51716877 MS.gene38863:CDS 45.0%
TCGCAAAATTGCGATTGCGA+GGG + chr8.4:51716736-51716755 MS.gene38863:CDS 45.0%
TGTGCTAGCTCAACTAAAGG+AGG + chr8.4:51717024-51717043 MS.gene38863:CDS 45.0%
! CTCAACCTAGATGATGGCAT+AGG + chr8.4:51716947-51716966 MS.gene38863:CDS 45.0%
!! ACATTCTCTAAGCGTCGAAC+AGG + chr8.4:51716785-51716804 MS.gene38863:CDS 45.0%
AATTTCTGCCCCGCACAAGA+TGG - chr8.4:51716837-51716856 None:intergenic 50.0%
ACTTCTTGCAGAGAAACCGG+TGG + chr8.4:51717198-51717217 MS.gene38863:CDS 50.0%
AGGAGGCTGAAAATGAGGCT+AGG + chr8.4:51717041-51717060 MS.gene38863:CDS 50.0%
GAGAGACCCTATCATAAGGC+AGG + chr8.4:51716760-51716779 MS.gene38863:CDS 50.0%
GCTATTGTTGTGTTCTCCCC+TGG + chr8.4:51716857-51716876 MS.gene38863:CDS 50.0%
GGAGAGCTCAACCTAGATGA+TGG + chr8.4:51716941-51716960 MS.gene38863:CDS 50.0%
GGAGGCTGAAAATGAGGCTA+GGG + chr8.4:51717042-51717061 MS.gene38863:CDS 50.0%
GGGTGAGAGACCCTATCATA+AGG + chr8.4:51716756-51716775 MS.gene38863:CDS 50.0%
GTCGCAAAATTGCGATTGCG+AGG + chr8.4:51716735-51716754 MS.gene38863:CDS 50.0%
TGAACTTGCCATCTTGTGCG+GGG + chr8.4:51716826-51716845 MS.gene38863:CDS 50.0%
CTTGCAGAGAAACCGGTGGT+TGG + chr8.4:51717202-51717221 MS.gene38863:CDS 55.0%
CTTGGGTGCCCGAAAGAGTA+AGG - chr8.4:51716890-51716909 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 51716728 51717273 51716728 ID=MS.gene38863
chr8.4 mRNA 51716728 51717273 51716728 ID=MS.gene38863.t1;Parent=MS.gene38863
chr8.4 exon 51716728 51717273 51716728 ID=MS.gene38863.t1.exon1;Parent=MS.gene38863.t1
chr8.4 CDS 51716728 51717273 51716728 ID=cds.MS.gene38863.t1;Parent=MS.gene38863.t1
Gene Sequence

>MS.gene38863

ATGGGTCGTCGCAAAATTGCGATTGCGAGGGTGAGAGACCCTATCATAAGGCAGGTTACATTCTCTAAGCGTCGAACAGGATTATTCAAGAAGGCAAATGAACTTGCCATCTTGTGCGGGGCAGAAATTGCTATTGTTGTGTTCTCCCCTGGGAATAAGCCTTACTCTTTCGGGCACCCAAGTGTTGATGATGTTGCATCCAAATTTCTTGAAGGAGAGCTCAACCTAGATGATGGCATAGGAAGCTCATCTTCTGAAGTTCCAAACAGAGAGGATCTGAATCAACAACTTGAAGATGTGCTAGCTCAACTAAAGGAGGCTGAAAATGAGGCTAGGGCACATGATGAGATCCTAGAAGAATACAAACCAACTGAACTCACTCAACTTGAGGATTTGAAAGATTCATATCGGAAATTGAAGGAAATGGTGAGATCACGACTTAGTGATTTAGAAACAACTGAATCTATGTTACTTCTTGCAGAGAAACCGGTGGTTGGAACAAAAAACAAAGTCGCAAGAAAGAAAGGAAAACAACCAATGCTTTAG
Protein sequence

>MS.gene38863.t1

MGRRKIAIARVRDPIIRQVTFSKRRTGLFKKANELAILCGAEIAIVVFSPGNKPYSFGHPSVDDVASKFLEGELNLDDGIGSSSSEVPNREDLNQQLEDVLAQLKEAENEARAHDEILEEYKPTELTQLEDLKDSYRKLKEMVRSRLSDLETTESMLLLAEKPVVGTKNKVARKKGKQPML