Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38950.t1 | XP_014518279.1 | 55 | 700 | 309 | 1 | 39 | 732 | 27 | 726 | 1.10E-228 | 803.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38950.t1 | Q9SWG3 | 35.1 | 607 | 373 | 10 | 48 | 644 | 51 | 646 | 3.4e-106 | 387.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38950.t1 | A0A1S3VJK5 | 55.0 | 700 | 309 | 1 | 39 | 732 | 27 | 726 | 7.9e-229 | 803.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene38950.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38950.t1 | MTR_6g051425 | 29.603 | 277 | 178 | 6 | 50 | 313 | 19 | 291 | 2.71e-34 | 134 |
| MS.gene38950.t1 | MTR_0856s0010 | 43.023 | 172 | 84 | 4 | 3 | 173 | 2 | 160 | 3.59e-33 | 125 |
| MS.gene38950.t1 | MTR_4g035820 | 30.743 | 296 | 179 | 12 | 9 | 288 | 39 | 324 | 2.24e-25 | 112 |
| MS.gene38950.t1 | MTR_0558s0020 | 25.260 | 289 | 182 | 8 | 30 | 284 | 8 | 296 | 1.29e-21 | 96.7 |
| MS.gene38950.t1 | MTR_7g446060 | 51.220 | 82 | 40 | 0 | 130 | 211 | 7 | 88 | 6.22e-20 | 87.0 |
| MS.gene38950.t1 | MTR_1g070355 | 28.085 | 235 | 154 | 7 | 54 | 278 | 80 | 309 | 3.60e-19 | 92.4 |
| MS.gene38950.t1 | MTR_8g446020 | 24.576 | 236 | 157 | 4 | 52 | 284 | 39 | 256 | 2.65e-17 | 82.8 |
| MS.gene38950.t1 | MTR_6g022070 | 28.966 | 145 | 99 | 1 | 338 | 482 | 1 | 141 | 4.23e-17 | 84.0 |
| MS.gene38950.t1 | MTR_3g450850 | 26.481 | 287 | 192 | 8 | 2 | 272 | 3 | 286 | 1.04e-16 | 82.8 |
| MS.gene38950.t1 | MTR_7g446480 | 31.395 | 172 | 117 | 1 | 122 | 292 | 143 | 314 | 1.52e-16 | 82.0 |
| MS.gene38950.t1 | MTR_1g008290 | 32.331 | 133 | 88 | 1 | 108 | 240 | 14 | 144 | 2.38e-16 | 77.0 |
| MS.gene38950.t1 | MTR_7g446510 | 30.814 | 172 | 118 | 1 | 122 | 292 | 158 | 329 | 5.25e-16 | 80.5 |
| MS.gene38950.t1 | MTR_7g446520 | 25.424 | 236 | 163 | 2 | 52 | 286 | 92 | 315 | 9.47e-16 | 79.7 |
| MS.gene38950.t1 | MTR_7g115320 | 61.111 | 54 | 18 | 1 | 137 | 190 | 9 | 59 | 7.46e-15 | 70.9 |
| MS.gene38950.t1 | MTR_1g019850 | 30.303 | 165 | 98 | 6 | 17 | 175 | 43 | 196 | 3.36e-14 | 73.2 |
| MS.gene38950.t1 | MTR_1g083640 | 23.162 | 272 | 175 | 8 | 18 | 255 | 11 | 282 | 5.52e-14 | 73.6 |
| MS.gene38950.t1 | MTR_5g023310 | 28.846 | 156 | 44 | 2 | 179 | 334 | 16 | 104 | 9.19e-14 | 68.6 |
| MS.gene38950.t1 | MTR_5g076070 | 23.166 | 259 | 186 | 7 | 23 | 272 | 28 | 282 | 1.25e-12 | 69.7 |
| MS.gene38950.t1 | MTR_3g012160 | 40.741 | 81 | 47 | 1 | 193 | 273 | 14 | 93 | 1.96e-12 | 64.3 |
| MS.gene38950.t1 | MTR_6g090505 | 25.843 | 178 | 129 | 2 | 109 | 283 | 53 | 230 | 4.02e-12 | 68.9 |
| MS.gene38950.t1 | MTR_0402s0040 | 25.000 | 180 | 130 | 3 | 47 | 221 | 25 | 204 | 2.90e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38950.t1 | AT4G15090 | 35.091 | 607 | 373 | 10 | 48 | 644 | 51 | 646 | 1.53e-121 | 384 |
| MS.gene38950.t1 | AT4G15090 | 35.091 | 607 | 373 | 10 | 48 | 644 | 51 | 646 | 1.53e-121 | 384 |
| MS.gene38950.t1 | AT4G15090 | 35.091 | 607 | 373 | 10 | 48 | 644 | 51 | 646 | 1.53e-121 | 384 |
| MS.gene38950.t1 | AT4G15090 | 35.091 | 607 | 373 | 10 | 48 | 644 | 51 | 646 | 1.53e-121 | 384 |
| MS.gene38950.t1 | AT4G15090 | 35.091 | 607 | 373 | 10 | 48 | 644 | 51 | 646 | 1.53e-121 | 384 |
| MS.gene38950.t1 | AT4G38180 | 31.842 | 760 | 465 | 18 | 8 | 736 | 38 | 775 | 4.42e-120 | 379 |
| MS.gene38950.t1 | AT3G22170 | 32.104 | 651 | 383 | 11 | 18 | 643 | 35 | 651 | 1.91e-110 | 355 |
| MS.gene38950.t1 | AT3G22170 | 32.104 | 651 | 383 | 11 | 18 | 643 | 35 | 651 | 1.91e-110 | 355 |
| MS.gene38950.t1 | AT1G76320 | 32.198 | 587 | 374 | 9 | 52 | 633 | 1 | 568 | 9.26e-105 | 336 |
| MS.gene38950.t1 | AT1G76320 | 32.198 | 587 | 374 | 9 | 52 | 633 | 1 | 568 | 2.04e-104 | 337 |
| MS.gene38950.t1 | AT1G76320 | 32.198 | 587 | 374 | 9 | 52 | 633 | 1 | 568 | 2.84e-104 | 336 |
| MS.gene38950.t1 | AT1G76320 | 32.198 | 587 | 374 | 9 | 52 | 633 | 1 | 568 | 2.84e-104 | 336 |
| MS.gene38950.t1 | AT1G52520 | 32.368 | 587 | 372 | 12 | 33 | 607 | 66 | 639 | 1.10e-103 | 334 |
| MS.gene38950.t1 | AT2G27110 | 31.639 | 610 | 364 | 14 | 48 | 645 | 49 | 617 | 4.88e-93 | 309 |
| MS.gene38950.t1 | AT2G27110 | 31.639 | 610 | 364 | 14 | 48 | 645 | 49 | 617 | 4.88e-93 | 309 |
| MS.gene38950.t1 | AT3G06250 | 33.215 | 563 | 324 | 14 | 48 | 606 | 190 | 704 | 1.60e-92 | 306 |
| MS.gene38950.t1 | AT3G06250 | 33.215 | 563 | 324 | 14 | 48 | 606 | 190 | 704 | 1.60e-92 | 306 |
| MS.gene38950.t1 | AT3G06250 | 33.215 | 563 | 324 | 14 | 48 | 606 | 190 | 704 | 1.60e-92 | 306 |
| MS.gene38950.t1 | AT1G80010 | 32.392 | 602 | 359 | 13 | 39 | 610 | 82 | 665 | 8.55e-91 | 300 |
| MS.gene38950.t1 | AT2G27110 | 34.519 | 478 | 290 | 9 | 172 | 645 | 14 | 472 | 2.34e-88 | 293 |
| MS.gene38950.t1 | AT5G18960 | 31.960 | 607 | 348 | 17 | 28 | 622 | 192 | 745 | 2.23e-86 | 290 |
| MS.gene38950.t1 | AT5G18960 | 31.960 | 607 | 348 | 17 | 28 | 622 | 192 | 745 | 2.23e-86 | 290 |
| MS.gene38950.t1 | AT2G32250 | 34.312 | 443 | 270 | 6 | 224 | 658 | 135 | 564 | 3.88e-82 | 278 |
| MS.gene38950.t1 | AT2G32250 | 34.312 | 443 | 270 | 6 | 224 | 658 | 176 | 605 | 4.68e-82 | 278 |
| MS.gene38950.t1 | AT2G32250 | 34.312 | 443 | 270 | 6 | 224 | 658 | 135 | 564 | 5.00e-82 | 278 |
| MS.gene38950.t1 | AT2G32250 | 34.312 | 443 | 270 | 6 | 224 | 658 | 176 | 605 | 8.55e-82 | 278 |
| MS.gene38950.t1 | AT2G32250 | 34.312 | 443 | 270 | 6 | 224 | 658 | 176 | 605 | 8.55e-82 | 278 |
| MS.gene38950.t1 | AT2G32250 | 34.312 | 443 | 270 | 6 | 224 | 658 | 176 | 605 | 9.33e-82 | 278 |
| MS.gene38950.t1 | AT2G32250 | 34.312 | 443 | 270 | 6 | 224 | 658 | 176 | 605 | 9.33e-82 | 278 |
| MS.gene38950.t1 | AT2G32250 | 34.312 | 443 | 270 | 6 | 224 | 658 | 176 | 605 | 9.33e-82 | 278 |
| MS.gene38950.t1 | AT4G19990 | 30.198 | 606 | 353 | 12 | 51 | 632 | 24 | 583 | 1.83e-79 | 270 |
| MS.gene38950.t1 | AT4G19990 | 30.198 | 606 | 353 | 12 | 51 | 632 | 24 | 583 | 1.83e-79 | 270 |
| MS.gene38950.t1 | AT4G19990 | 30.198 | 606 | 353 | 12 | 51 | 632 | 24 | 583 | 2.60e-79 | 270 |
| MS.gene38950.t1 | AT4G19990 | 30.198 | 606 | 353 | 12 | 51 | 632 | 38 | 597 | 3.52e-79 | 270 |
| MS.gene38950.t1 | AT4G19990 | 30.198 | 606 | 353 | 12 | 51 | 632 | 24 | 583 | 5.31e-79 | 270 |
| MS.gene38950.t1 | AT4G19990 | 30.198 | 606 | 353 | 12 | 51 | 632 | 24 | 583 | 5.31e-79 | 270 |
| MS.gene38950.t1 | AT4G38170 | 34.278 | 388 | 244 | 4 | 221 | 606 | 21 | 399 | 4.40e-78 | 261 |
| MS.gene38950.t1 | AT4G19990 | 30.983 | 539 | 318 | 10 | 104 | 632 | 32 | 526 | 4.12e-75 | 257 |
| MS.gene38950.t1 | AT1G10240 | 26.274 | 628 | 414 | 17 | 1 | 603 | 1 | 604 | 6.53e-63 | 223 |
| MS.gene38950.t1 | AT1G10240 | 26.274 | 628 | 414 | 17 | 1 | 603 | 1 | 604 | 6.53e-63 | 223 |
| MS.gene38950.t1 | AT5G28530 | 27.778 | 594 | 365 | 13 | 46 | 603 | 53 | 618 | 3.26e-61 | 219 |
| MS.gene38950.t1 | AT5G28530 | 27.273 | 594 | 364 | 12 | 46 | 603 | 53 | 614 | 2.17e-60 | 216 |
| MS.gene38950.t1 | AT5G28530 | 27.273 | 594 | 364 | 12 | 46 | 603 | 53 | 614 | 2.17e-60 | 216 |
| MS.gene38950.t1 | AT5G28530 | 26.829 | 328 | 202 | 7 | 290 | 603 | 252 | 555 | 1.08e-27 | 119 |
| MS.gene38950.t1 | AT5G28530 | 28.324 | 173 | 107 | 5 | 46 | 205 | 53 | 221 | 7.20e-11 | 66.2 |
| MS.gene38950.t1 | AT5G28530 | 25.915 | 328 | 201 | 6 | 290 | 603 | 252 | 551 | 5.49e-27 | 117 |
| MS.gene38950.t1 | AT5G28530 | 28.324 | 173 | 107 | 5 | 46 | 205 | 53 | 221 | 6.92e-11 | 66.2 |
Find 148 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGTTGACGTTTCGGATTC+CGG | 0.204382 | 8.4:+49482023 | MS.gene38950:CDS |
| TCTTTCCCGCTCTTCGAAAA+TGG | 0.249066 | 8.4:-49483185 | None:intergenic |
| TAAGATGACCAAGTACAAAA+AGG | 0.265908 | 8.4:-49483687 | None:intergenic |
| GATCGCAAACCCTTGTTTCA+TGG | 0.299904 | 8.4:-49482150 | None:intergenic |
| AAGACCGCAACCTAGTAAAA+TGG | 0.321194 | 8.4:-49482831 | None:intergenic |
| GTGTTGACGTTTCGGATTCC+GGG | 0.344560 | 8.4:+49482024 | MS.gene38950:CDS |
| GGCTATGCAGAATGCAATTC+AGG | 0.347065 | 8.4:+49482955 | MS.gene38950:CDS |
| GGATTAAGAATTGGTTGTTC+AGG | 0.350886 | 8.4:-49484021 | None:intergenic |
| TCTGGGCTGATGCACGTTGT+AGG | 0.361023 | 8.4:+49482699 | MS.gene38950:CDS |
| TTGCTTTAAAGAAGGGTCTA+TGG | 0.361166 | 8.4:+49482321 | MS.gene38950:CDS |
| TGCGGCTCGTGTTGACGTTT+CGG | 0.362249 | 8.4:+49482016 | MS.gene38950:CDS |
| ATGCCATTTGCCCCGTTTGT+TGG | 0.369173 | 8.4:+49482788 | MS.gene38950:CDS |
| ACTAAATCACGGTTGTTTGC+TGG | 0.375082 | 8.4:+49482389 | MS.gene38950:CDS |
| AGTATTGTGTTGATTTCAAC+GGG | 0.389824 | 8.4:+49483599 | MS.gene38950:CDS |
| CACCACCTATGCCTAGTATT+AGG | 0.393202 | 8.4:-49482986 | None:intergenic |
| GTACACCCATGACAAGTATA+TGG | 0.398379 | 8.4:+49483453 | MS.gene38950:CDS |
| GCAAAAGAAAGACACCTTCT+TGG | 0.398884 | 8.4:+49482563 | MS.gene38950:CDS |
| CTAGGCATAGGTGGTGTCTA+TGG | 0.405638 | 8.4:+49482993 | MS.gene38950:CDS |
| ACTTCGACAACCGAAACAAT+TGG | 0.413255 | 8.4:-49484141 | None:intergenic |
| AAAGGATGATCGATCAATAT+AGG | 0.415391 | 8.4:-49481963 | None:intergenic |
| CCTCTGTGTTGTTGACATTC+CGG | 0.424793 | 8.4:-49483242 | None:intergenic |
| GATGATTGACACCAACAAAC+GGG | 0.432575 | 8.4:-49482799 | None:intergenic |
| TTGGTGGTATGTTTGATTCA+TGG | 0.433399 | 8.4:-49482247 | None:intergenic |
| ACACCAACAAACGGGGCAAA+TGG | 0.438957 | 8.4:-49482791 | None:intergenic |
| GCAAACAACCGTGATTTAGT+TGG | 0.439208 | 8.4:-49482386 | None:intergenic |
| ATGGTTTGGGTGAAAATGAT+TGG | 0.445440 | 8.4:+49483155 | MS.gene38950:CDS |
| TGATGATTGACACCAACAAA+CGG | 0.449717 | 8.4:-49482800 | None:intergenic |
| CCATCAGCTAGCTCTCCGTC+AGG | 0.451558 | 8.4:-49481993 | None:intergenic |
| ACACAATACTTAGTTTCGTT+CGG | 0.457073 | 8.4:-49483586 | None:intergenic |
| GGCTAAGGTGTATGTCTTCG+AGG | 0.457503 | 8.4:+49482900 | MS.gene38950:CDS |
| TATCCTACTTTGCTAGAATG+AGG | 0.459924 | 8.4:+49482612 | MS.gene38950:CDS |
| AAAACTAGAAACTCTAAGAA+AGG | 0.460138 | 8.4:+49482173 | MS.gene38950:CDS |
| AAACTAGAAACTCTAAGAAA+GGG | 0.460938 | 8.4:+49482174 | MS.gene38950:CDS |
| ACTCCAAGACAAGGCTGAAA+AGG | 0.462412 | 8.4:+49483348 | MS.gene38950:CDS |
| CAAATGGTCTACCAAGAAGT+TGG | 0.463702 | 8.4:+49483918 | MS.gene38950:CDS |
| AGGTTGTGTTTCCTAATACT+AGG | 0.465284 | 8.4:+49482975 | MS.gene38950:CDS |
| GATAACGGTTGCTTTAAAGA+AGG | 0.473052 | 8.4:+49482313 | MS.gene38950:CDS |
| AACATCACCAAAGTATTCAT+AGG | 0.473828 | 8.4:-49482726 | None:intergenic |
| TTTGTTGGTGTCAATCATCA+TGG | 0.475674 | 8.4:+49482803 | MS.gene38950:CDS |
| CAAAAGAAAGACACCTTCTT+GGG | 0.476380 | 8.4:+49482564 | MS.gene38950:CDS |
| CCACACATAGAAAGATTTGA+AGG | 0.478166 | 8.4:+49483814 | MS.gene38950:CDS |
| GCCACATTGTGGTGTGGGAG+GGG | 0.479684 | 8.4:+49483957 | MS.gene38950:CDS |
| GAGCAATCAAGTTTCTTCGT+TGG | 0.480101 | 8.4:-49482284 | None:intergenic |
| CACTTATGCTCGATGGCTGA+TGG | 0.482201 | 8.4:+49481936 | None:intergenic |
| ATTTGTTGTTTCAAAGGTCC+CGG | 0.485747 | 8.4:-49482042 | None:intergenic |
| TTGAAATTGTCTCTCGATTG+TGG | 0.489013 | 8.4:-49483425 | None:intergenic |
| GACAGCATTTGTTGTTTCAA+AGG | 0.491833 | 8.4:-49482048 | None:intergenic |
| CTTGTTTCATGGCATATTCA+CGG | 0.492232 | 8.4:-49482139 | None:intergenic |
| TCCGTTAAAAGTACCACGTA+AGG | 0.492742 | 8.4:+49484041 | MS.gene38950:CDS |
| CATCTCCTTCCTTCCCAAGA+AGG | 0.496443 | 8.4:-49482577 | None:intergenic |
| GACAATACTCTCCTCTAAAA+CGG | 0.498094 | 8.4:-49483554 | None:intergenic |
| CGTGAATATGCCATGAAACA+AGG | 0.498225 | 8.4:+49482140 | MS.gene38950:CDS |
| TGTATGAAGAAATGATCAAA+TGG | 0.501577 | 8.4:+49483902 | MS.gene38950:CDS |
| TTAAAAGACATACCGATAGT+AGG | 0.501742 | 8.4:-49482089 | None:intergenic |
| AAATGGTCTACCAAGAAGTT+GGG | 0.502052 | 8.4:+49483919 | MS.gene38950:CDS |
| TTTCGAAGAGCGGGAAAGAT+GGG | 0.502201 | 8.4:+49483189 | MS.gene38950:CDS |
| GTTGGATTCGTCTTCAAAGT+TGG | 0.502236 | 8.4:-49482266 | None:intergenic |
| ATACTTGTCATGGGTGTACT+CGG | 0.502362 | 8.4:-49483449 | None:intergenic |
| TTACCTGGTTGTTCGAAACA+TGG | 0.503284 | 8.4:+49482879 | MS.gene38950:CDS |
| TGGTCATCTTAGAGTGAAAG+AGG | 0.503540 | 8.4:+49483699 | MS.gene38950:CDS |
| TATGTCTTCGAGGCCTCCAA+TGG | 0.508338 | 8.4:+49482910 | MS.gene38950:CDS |
| TCGGTTACAATTCCCATTGG+AGG | 0.511504 | 8.4:-49482923 | None:intergenic |
| TTACGAAAATCTAACATTTG+TGG | 0.512305 | 8.4:+49482517 | MS.gene38950:CDS |
| AAACGATCAGGCAGGTGTAC+GGG | 0.512319 | 8.4:+49482454 | MS.gene38950:CDS |
| CGTTCCATGGTATGTGATGC+CGG | 0.512631 | 8.4:+49482491 | MS.gene38950:CDS |
| GAGAGATGTCAGAAACTTTG+TGG | 0.514693 | 8.4:+49482541 | MS.gene38950:CDS |
| TTGGGAAGGAAGGAGATGAC+AGG | 0.515488 | 8.4:+49482582 | MS.gene38950:CDS |
| GTATCTCCATATACTTGTCA+TGG | 0.517305 | 8.4:-49483459 | None:intergenic |
| CCTTCAAATCTTTCTATGTG+TGG | 0.521556 | 8.4:-49483814 | None:intergenic |
| ATAACGGTTGCTTTAAAGAA+GGG | 0.522275 | 8.4:+49482314 | MS.gene38950:CDS |
| AGACACCTTCTTGGGAAGGA+AGG | 0.523960 | 8.4:+49482572 | MS.gene38950:CDS |
| TTCCCTCATTCTAGCAAAGT+AGG | 0.524536 | 8.4:-49482615 | None:intergenic |
| GAACAAAAGTTTCCGTTCCA+TGG | 0.529264 | 8.4:+49482478 | MS.gene38950:CDS |
| GGATTCGTCTTCAAAGTTGG+TGG | 0.530111 | 8.4:-49482263 | None:intergenic |
| TAAACGATCAGGCAGGTGTA+CGG | 0.533293 | 8.4:+49482453 | MS.gene38950:CDS |
| AAGTATTGTGTTGATTTCAA+CGG | 0.536214 | 8.4:+49483598 | MS.gene38950:CDS |
| ATCCTACTTTGCTAGAATGA+GGG | 0.537508 | 8.4:+49482613 | MS.gene38950:CDS |
| TGATCGGTTACAATTCCCAT+TGG | 0.541217 | 8.4:-49482926 | None:intergenic |
| CATCAGCTAGCTCTCCGTCA+GGG | 0.541329 | 8.4:-49481992 | None:intergenic |
| CTGCATAGCCTTGCACTGAT+CGG | 0.542185 | 8.4:-49482942 | None:intergenic |
| CTATGAGATTGACATGGACG+AGG | 0.547341 | 8.4:+49482655 | MS.gene38950:CDS |
| TGTTTGTTGTTTGAGTTCAG+AGG | 0.550114 | 8.4:+49483646 | MS.gene38950:CDS |
| TGATTGCTCAGCTAAGATAA+CGG | 0.550952 | 8.4:+49482298 | MS.gene38950:CDS |
| GATAAATTCACGCCTACTAT+CGG | 0.551302 | 8.4:+49482077 | MS.gene38950:CDS |
| TATCTCCATATACTTGTCAT+GGG | 0.551454 | 8.4:-49483458 | None:intergenic |
| ATTCTAACTTGTGCAAGAGA+AGG | 0.552020 | 8.4:+49482221 | MS.gene38950:CDS |
| CAGCCACATTGTGGTGTGGG+AGG | 0.557227 | 8.4:+49483955 | MS.gene38950:CDS |
| TTACAGCCACATTGTGGTGT+GGG | 0.557892 | 8.4:+49483952 | MS.gene38950:CDS |
| TGTTTCGAACAACCAGGTAA+AGG | 0.558836 | 8.4:-49482876 | None:intergenic |
| AACTCTAAGAAAGGGGCCGA+TGG | 0.560180 | 8.4:+49482182 | MS.gene38950:CDS |
| AGGTCTGCCTATGAATACTT+TGG | 0.560867 | 8.4:+49482719 | MS.gene38950:CDS |
| AGCCACATTGTGGTGTGGGA+GGG | 0.562336 | 8.4:+49483956 | MS.gene38950:CDS |
| CTAAATTTATCTTGCCACGA+TGG | 0.563368 | 8.4:+49483728 | MS.gene38950:CDS |
| GAGATACAAGTAGAATTTCG+TGG | 0.566723 | 8.4:+49483475 | MS.gene38950:CDS |
| GAACAACCAGGTAAAGGACT+TGG | 0.570795 | 8.4:-49482870 | None:intergenic |
| ATGTCTTCGAGGCCTCCAAT+GGG | 0.571048 | 8.4:+49482911 | MS.gene38950:CDS |
| TGTTTCCTAATACTAGGCAT+AGG | 0.571109 | 8.4:+49482981 | MS.gene38950:CDS |
| TTGTTGGTGTCAATCATCAT+GGG | 0.576932 | 8.4:+49482804 | MS.gene38950:CDS |
| TCTCGAAGGTGTGACTACAT+TGG | 0.577648 | 8.4:+49483513 | MS.gene38950:CDS |
| ATCAGCTAGCTCTCCGTCAG+GGG | 0.582853 | 8.4:-49481991 | None:intergenic |
| TTGTGTGTATGATTCTCTGC+GGG | 0.590009 | 8.4:+49483090 | MS.gene38950:CDS |
| AGAAAGACACCTTCTTGGGA+AGG | 0.590785 | 8.4:+49482568 | MS.gene38950:CDS |
| CATTTCTTCATACAAATCAG+AGG | 0.596809 | 8.4:-49483893 | None:intergenic |
| GTGAATATGCCATGAAACAA+GGG | 0.602322 | 8.4:+49482141 | MS.gene38950:CDS |
| AAGATACCAAGTCCTTTACC+TGG | 0.605756 | 8.4:+49482864 | MS.gene38950:CDS |
| CGACAACGCACTCCAAGACA+AGG | 0.606607 | 8.4:+49483339 | MS.gene38950:CDS |
| AGATACAAGTAGAATTTCGT+GGG | 0.607840 | 8.4:+49483476 | MS.gene38950:CDS |
| GACAACCGACGATTAGTTCG+AGG | 0.611005 | 8.4:-49484069 | None:intergenic |
| TGCATCAATGAGCAAAGATG+TGG | 0.611914 | 8.4:+49484368 | MS.gene38950:CDS |
| ACCACCGGCATCACATACCA+TGG | 0.613048 | 8.4:-49482495 | None:intergenic |
| AAATGCAACTGTTATCTCGA+AGG | 0.615193 | 8.4:+49483499 | MS.gene38950:CDS |
| TTCCTAATACTAGGCATAGG+TGG | 0.615209 | 8.4:+49482984 | MS.gene38950:CDS |
| CAAGCACAATCATTCCATGC+GGG | 0.616971 | 8.4:+49483395 | MS.gene38950:CDS |
| GGTTGTTCGAAACATGGCTA+AGG | 0.617470 | 8.4:+49482885 | MS.gene38950:CDS |
| CGTGGCAAGATAAATTTAGA+CGG | 0.619992 | 8.4:-49483724 | None:intergenic |
| AATTGTAACCGATCAGTGCA+AGG | 0.620761 | 8.4:+49482934 | MS.gene38950:CDS |
| TCATCCCAACAGTCAACTAG+TGG | 0.623204 | 8.4:+49484330 | MS.gene38950:intron |
| CCTGACGGAGAGCTAGCTGA+TGG | 0.623440 | 8.4:+49481993 | MS.gene38950:CDS |
| CCGTTAAAAGTACCACGTAA+GGG | 0.624486 | 8.4:+49484042 | MS.gene38950:CDS |
| CGGCATCACATACCATGGAA+CGG | 0.625469 | 8.4:-49482490 | None:intergenic |
| TAGCCATGTTTCGAACAACC+AGG | 0.627145 | 8.4:-49482882 | None:intergenic |
| ATTGTGGAATTTGACCCGCA+TGG | 0.627292 | 8.4:-49483409 | None:intergenic |
| GTTCGAGGACGTCCCTTACG+TGG | 0.628497 | 8.4:-49484054 | None:intergenic |
| TTTACAGCCACATTGTGGTG+TGG | 0.632168 | 8.4:+49483951 | MS.gene38950:CDS |
| AACTAGAAACTCTAAGAAAG+GGG | 0.633083 | 8.4:+49482175 | MS.gene38950:CDS |
| ATGAGTTTACAGCCACATTG+TGG | 0.634509 | 8.4:+49483946 | MS.gene38950:CDS |
| AAAGGATACGCACAATACAA+AGG | 0.637659 | 8.4:+49483046 | MS.gene38950:CDS |
| CAAGGCTGAAAAGGAATACG+AGG | 0.638254 | 8.4:+49483357 | MS.gene38950:CDS |
| GGATGATCGATCAATATAGG+AGG | 0.639611 | 8.4:-49481960 | None:intergenic |
| TACAAATCAGAGGTTTGACT+AGG | 0.642589 | 8.4:-49483883 | None:intergenic |
| AGATAAGTCCAACTAAATCA+CGG | 0.645312 | 8.4:+49482378 | MS.gene38950:CDS |
| TCAGCTAGCTCTCCGTCAGG+GGG | 0.662037 | 8.4:-49481990 | None:intergenic |
| TTATGAAATTGCAGAATGTG+CGG | 0.662542 | 8.4:+49483852 | MS.gene38950:CDS |
| CGGAGAGCTAGCTGATGGTG+CGG | 0.662675 | 8.4:+49481998 | MS.gene38950:CDS |
| ATGATTGACACCAACAAACG+GGG | 0.665562 | 8.4:-49482798 | None:intergenic |
| TGGGAAGGAAGGAGATGACA+GGG | 0.667401 | 8.4:+49482583 | MS.gene38950:CDS |
| TTAGAGGAGAGTATTGTCTG+TGG | 0.669312 | 8.4:+49483559 | MS.gene38950:CDS |
| GGATCATAGCTTAAACACGA+TGG | 0.674970 | 8.4:+49483978 | MS.gene38950:CDS |
| GACGTCCTCGAACTAATCGT+CGG | 0.680634 | 8.4:+49484064 | MS.gene38950:CDS |
| TCATAGCTTAAACACGATGG+AGG | 0.690849 | 8.4:+49483981 | MS.gene38950:CDS |
| ATACTTGTTTGTCAAGTACG+TGG | 0.696002 | 8.4:-49482762 | None:intergenic |
| TCAAGCACAATCATTCCATG+CGG | 0.697666 | 8.4:+49483394 | MS.gene38950:CDS |
| TCCCCTCCCACACCACAATG+TGG | 0.710147 | 8.4:-49483958 | None:intergenic |
| ATTGTGTGTATGATTCTCTG+CGG | 0.733784 | 8.4:+49483089 | MS.gene38950:CDS |
| TCCATGGTATGTGATGCCGG+TGG | 0.764195 | 8.4:+49482494 | MS.gene38950:CDS |
| CCGGAATGTCAACAACACAG+AGG | 0.797075 | 8.4:+49483242 | MS.gene38950:CDS |
| AGATTGATATGCATGCACAG+CGG | 0.798983 | 8.4:+49482420 | MS.gene38950:CDS |
| GTATTGTGTTGATTTCAACG+GGG | 0.841514 | 8.4:+49483600 | MS.gene38950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTAAAAAATGATTTCT+GGG | + | chr8.4:49483219-49483238 | MS.gene38950:CDS | 10.0% |
| !!! | AAATCATTTTTTAAATAACA+TGG | - | chr8.4:49483217-49483236 | None:intergenic | 10.0% |
| !! | AATGTAATCACAATAATAAT+AGG | - | chr8.4:49484180-49484199 | None:intergenic | 15.0% |
| !! | GTTATTTAAAAAATGATTTC+TGG | + | chr8.4:49483218-49483237 | MS.gene38950:CDS | 15.0% |
| !! | AAGAAAAAAACCAATTGTTT+CGG | + | chr8.4:49484131-49484150 | MS.gene38950:CDS | 20.0% |
| !! | ACAACATTCATTGAAAAATA+TGG | + | chr8.4:49483136-49483155 | MS.gene38950:CDS | 20.0% |
| !! | ATTCATTGAAAAATATGGTT+TGG | + | chr8.4:49483141-49483160 | MS.gene38950:CDS | 20.0% |
| !! | TTCATTGAAAAATATGGTTT+GGG | + | chr8.4:49483142-49483161 | MS.gene38950:CDS | 20.0% |
| ! | AAAATTGCCGAAAAATTGAA+AGG | + | chr8.4:49483028-49483047 | MS.gene38950:CDS | 25.0% |
| ! | TGTATGAAGAAATGATCAAA+TGG | + | chr8.4:49483902-49483921 | MS.gene38950:CDS | 25.0% |
| ! | TTACGAAAATCTAACATTTG+TGG | + | chr8.4:49482517-49482536 | MS.gene38950:CDS | 25.0% |
| !! | AAAACTAGAAACTCTAAGAA+AGG | + | chr8.4:49482173-49482192 | MS.gene38950:CDS | 25.0% |
| !! | AAACTAGAAACTCTAAGAAA+GGG | + | chr8.4:49482174-49482193 | MS.gene38950:CDS | 25.0% |
| !! | TATCGGTATGTCTTTTAAAT+CGG | + | chr8.4:49482094-49482113 | MS.gene38950:CDS | 25.0% |
| !!! | AAGTATTGTGTTGATTTCAA+CGG | + | chr8.4:49483598-49483617 | MS.gene38950:CDS | 25.0% |
| !!! | ACTTTTAACGGATTAAGAAT+TGG | - | chr8.4:49484033-49484052 | None:intergenic | 25.0% |
| !!! | GAAATATTTTAACATGCCAT+CGG | - | chr8.4:49482201-49482220 | None:intergenic | 25.0% |
| !!! | TTTTTTCACAATCTTTTCAG+TGG | - | chr8.4:49484097-49484116 | None:intergenic | 25.0% |
| AAAGGATGATCGATCAATAT+AGG | - | chr8.4:49481966-49481985 | None:intergenic | 30.0% | |
| AAGATGACCAAGTACAAAAA+GGG | - | chr8.4:49483689-49483708 | None:intergenic | 30.0% | |
| ACACAATACTTAGTTTCGTT+CGG | - | chr8.4:49483589-49483608 | None:intergenic | 30.0% | |
| AGATAAGTCCAACTAAATCA+CGG | + | chr8.4:49482378-49482397 | MS.gene38950:CDS | 30.0% | |
| AGATACAAGTAGAATTTCGT+GGG | + | chr8.4:49483476-49483495 | MS.gene38950:CDS | 30.0% | |
| CATTTCTTCATACAAATCAG+AGG | - | chr8.4:49483896-49483915 | None:intergenic | 30.0% | |
| TAAGATGACCAAGTACAAAA+AGG | - | chr8.4:49483690-49483709 | None:intergenic | 30.0% | |
| TATCTCCATATACTTGTCAT+GGG | - | chr8.4:49483461-49483480 | None:intergenic | 30.0% | |
| TTAAAAGACATACCGATAGT+AGG | - | chr8.4:49482092-49482111 | None:intergenic | 30.0% | |
| TTATGAAATTGCAGAATGTG+CGG | + | chr8.4:49483852-49483871 | MS.gene38950:CDS | 30.0% | |
| ! | AACATCACCAAAGTATTCAT+AGG | - | chr8.4:49482729-49482748 | None:intergenic | 30.0% |
| ! | AACTAGAAACTCTAAGAAAG+GGG | + | chr8.4:49482175-49482194 | MS.gene38950:CDS | 30.0% |
| ! | CTTTTTCTATGAGATTGACA+TGG | + | chr8.4:49482649-49482668 | MS.gene38950:CDS | 30.0% |
| ! | TCATGTGCAGAATATTTTCT+GGG | + | chr8.4:49482682-49482701 | MS.gene38950:CDS | 30.0% |
| ! | TGCGTATCCTTTCAATTTTT+CGG | - | chr8.4:49483038-49483057 | None:intergenic | 30.0% |
| ! | TTAAAAAATGATTTCTGGGC+CGG | + | chr8.4:49483223-49483242 | MS.gene38950:CDS | 30.0% |
| ! | TTCATGTGCAGAATATTTTC+TGG | + | chr8.4:49482681-49482700 | MS.gene38950:CDS | 30.0% |
| !! | AGTATTGTGTTGATTTCAAC+GGG | + | chr8.4:49483599-49483618 | MS.gene38950:CDS | 30.0% |
| !! | ATAACGGTTGCTTTAAAGAA+GGG | + | chr8.4:49482314-49482333 | MS.gene38950:CDS | 30.0% |
| !! | GACAATTTTGATAAACGATC+AGG | + | chr8.4:49482442-49482461 | MS.gene38950:CDS | 30.0% |
| !!! | AGTATGAATGCTTTTTTCGA+TGG | + | chr8.4:49483271-49483290 | MS.gene38950:CDS | 30.0% |
| !!! | TATGTGTGGTTGTAGTTTTT+TGG | - | chr8.4:49483803-49483822 | None:intergenic | 30.0% |
| AAAACCACTAGTTGACTGTT+GGG | - | chr8.4:49484337-49484356 | None:intergenic | 35.0% | |
| AAAGGATACGCACAATACAA+AGG | + | chr8.4:49483046-49483065 | MS.gene38950:CDS | 35.0% | |
| AAATGCAACTGTTATCTCGA+AGG | + | chr8.4:49483499-49483518 | MS.gene38950:CDS | 35.0% | |
| AAATGGTCTACCAAGAAGTT+GGG | + | chr8.4:49483919-49483938 | MS.gene38950:CDS | 35.0% | |
| ACATTACTTCCTATGTCTGA+TGG | + | chr8.4:49484273-49484292 | MS.gene38950:intron | 35.0% | |
| AGGTTGTGTTTCCTAATACT+AGG | + | chr8.4:49482975-49482994 | MS.gene38950:CDS | 35.0% | |
| ATACTTGTTTGTCAAGTACG+TGG | - | chr8.4:49482765-49482784 | None:intergenic | 35.0% | |
| ATCCTACTTTGCTAGAATGA+GGG | + | chr8.4:49482613-49482632 | MS.gene38950:CDS | 35.0% | |
| ATTGTGTGTATGATTCTCTG+CGG | + | chr8.4:49483089-49483108 | MS.gene38950:CDS | 35.0% | |
| CAAAAGAAAGACACCTTCTT+GGG | + | chr8.4:49482564-49482583 | MS.gene38950:CDS | 35.0% | |
| CATTACTTCCTATGTCTGAT+GGG | + | chr8.4:49484274-49484293 | MS.gene38950:intron | 35.0% | |
| CCACACATAGAAAGATTTGA+AGG | + | chr8.4:49483814-49483833 | MS.gene38950:CDS | 35.0% | |
| CCTTCAAATCTTTCTATGTG+TGG | - | chr8.4:49483817-49483836 | None:intergenic | 35.0% | |
| CGTGGCAAGATAAATTTAGA+CGG | - | chr8.4:49483727-49483746 | None:intergenic | 35.0% | |
| CTAAATTTATCTTGCCACGA+TGG | + | chr8.4:49483728-49483747 | MS.gene38950:CDS | 35.0% | |
| CTTGTTTCATGGCATATTCA+CGG | - | chr8.4:49482142-49482161 | None:intergenic | 35.0% | |
| GAGATACAAGTAGAATTTCG+TGG | + | chr8.4:49483475-49483494 | MS.gene38950:CDS | 35.0% | |
| GATAAATTCACGCCTACTAT+CGG | + | chr8.4:49482077-49482096 | MS.gene38950:CDS | 35.0% | |
| GGATTAAGAATTGGTTGTTC+AGG | - | chr8.4:49484024-49484043 | None:intergenic | 35.0% | |
| GTATCTCCATATACTTGTCA+TGG | - | chr8.4:49483462-49483481 | None:intergenic | 35.0% | |
| GTGAATATGCCATGAAACAA+GGG | + | chr8.4:49482141-49482160 | MS.gene38950:CDS | 35.0% | |
| TAAAACCACTAGTTGACTGT+TGG | - | chr8.4:49484338-49484357 | None:intergenic | 35.0% | |
| TACAAATCAGAGGTTTGACT+AGG | - | chr8.4:49483886-49483905 | None:intergenic | 35.0% | |
| TATCCTACTTTGCTAGAATG+AGG | + | chr8.4:49482612-49482631 | MS.gene38950:CDS | 35.0% | |
| TCAGACATAGGAAGTAATGT+AGG | - | chr8.4:49484273-49484292 | None:intergenic | 35.0% | |
| TGATGATTGACACCAACAAA+CGG | - | chr8.4:49482803-49482822 | None:intergenic | 35.0% | |
| TGATTGCTCAGCTAAGATAA+CGG | + | chr8.4:49482298-49482317 | MS.gene38950:CDS | 35.0% | |
| TGTTTCCTAATACTAGGCAT+AGG | + | chr8.4:49482981-49483000 | MS.gene38950:CDS | 35.0% | |
| TTGAAATTGTCTCTCGATTG+TGG | - | chr8.4:49483428-49483447 | None:intergenic | 35.0% | |
| ! | ATCTACATACACCGTTTTAG+AGG | + | chr8.4:49483543-49483562 | MS.gene38950:CDS | 35.0% |
| ! | ATGGTTTGGGTGAAAATGAT+TGG | + | chr8.4:49483155-49483174 | MS.gene38950:CDS | 35.0% |
| ! | ATTCTAACTTGTGCAAGAGA+AGG | + | chr8.4:49482221-49482240 | MS.gene38950:CDS | 35.0% |
| ! | CAATCCATTTTACTAGGTTG+CGG | + | chr8.4:49482827-49482846 | MS.gene38950:CDS | 35.0% |
| ! | GACAATACTCTCCTCTAAAA+CGG | - | chr8.4:49483557-49483576 | None:intergenic | 35.0% |
| ! | TGAATACCATTTTCGAAGAG+CGG | + | chr8.4:49483179-49483198 | MS.gene38950:CDS | 35.0% |
| ! | TGTTAGATTTTCGTAACCAC+CGG | - | chr8.4:49482513-49482532 | None:intergenic | 35.0% |
| ! | TTCACATTTTTACTCCATCG+TGG | - | chr8.4:49483745-49483764 | None:intergenic | 35.0% |
| ! | TTGGTGGTATGTTTGATTCA+TGG | - | chr8.4:49482250-49482269 | None:intergenic | 35.0% |
| ! | TTTCACAATCTTTTCAGTGG+TGG | - | chr8.4:49484094-49484113 | None:intergenic | 35.0% |
| !! | ATTTGTTGTTTCAAAGGTCC+CGG | - | chr8.4:49482045-49482064 | None:intergenic | 35.0% |
| !! | ATTTTGATAAACGATCAGGC+AGG | + | chr8.4:49482446-49482465 | MS.gene38950:CDS | 35.0% |
| !! | GACAGCATTTGTTGTTTCAA+AGG | - | chr8.4:49482051-49482070 | None:intergenic | 35.0% |
| !! | GATAACGGTTGCTTTAAAGA+AGG | + | chr8.4:49482313-49482332 | MS.gene38950:CDS | 35.0% |
| !! | GTATTGTGTTGATTTCAACG+GGG | + | chr8.4:49483600-49483619 | MS.gene38950:CDS | 35.0% |
| !! | TGTTTGTTGTTTGAGTTCAG+AGG | + | chr8.4:49483646-49483665 | MS.gene38950:CDS | 35.0% |
| !! | TTGCTTTAAAGAAGGGTCTA+TGG | + | chr8.4:49482321-49482340 | MS.gene38950:CDS | 35.0% |
| !! | TTGTTGGTGTCAATCATCAT+GGG | + | chr8.4:49482804-49482823 | MS.gene38950:CDS | 35.0% |
| !! | TTTGTTGGTGTCAATCATCA+TGG | + | chr8.4:49482803-49482822 | MS.gene38950:CDS | 35.0% |
| !!! | GGGTTGATGATTTTGTTGTT+GGG | + | chr8.4:49483110-49483129 | MS.gene38950:CDS | 35.0% |
| !!! | TTGATGATTTTGTTGTTGGG+TGG | + | chr8.4:49483113-49483132 | MS.gene38950:CDS | 35.0% |
| AAGACCGCAACCTAGTAAAA+TGG | - | chr8.4:49482834-49482853 | None:intergenic | 40.0% | |
| AAGATACCAAGTCCTTTACC+TGG | + | chr8.4:49482864-49482883 | MS.gene38950:CDS | 40.0% | |
| AATTGTAACCGATCAGTGCA+AGG | + | chr8.4:49482934-49482953 | MS.gene38950:CDS | 40.0% | |
| ACTAAATCACGGTTGTTTGC+TGG | + | chr8.4:49482389-49482408 | MS.gene38950:CDS | 40.0% | |
| ACTTCGACAACCGAAACAAT+TGG | - | chr8.4:49484144-49484163 | None:intergenic | 40.0% | |
| AGATTGATATGCATGCACAG+CGG | + | chr8.4:49482420-49482439 | MS.gene38950:CDS | 40.0% | |
| AGGTCTGCCTATGAATACTT+TGG | + | chr8.4:49482719-49482738 | MS.gene38950:CDS | 40.0% | |
| ATACTTGTCATGGGTGTACT+CGG | - | chr8.4:49483452-49483471 | None:intergenic | 40.0% | |
| ATGAGTTTACAGCCACATTG+TGG | + | chr8.4:49483946-49483965 | MS.gene38950:CDS | 40.0% | |
| ATGATTGACACCAACAAACG+GGG | - | chr8.4:49482801-49482820 | None:intergenic | 40.0% | |
| CAAATGGTCTACCAAGAAGT+TGG | + | chr8.4:49483918-49483937 | MS.gene38950:CDS | 40.0% | |
| CGTGAATATGCCATGAAACA+AGG | + | chr8.4:49482140-49482159 | MS.gene38950:CDS | 40.0% | |
| GAACAAAAGTTTCCGTTCCA+TGG | + | chr8.4:49482478-49482497 | MS.gene38950:CDS | 40.0% | |
| GAAGTAGTTAAGCGTATCAC+CGG | - | chr8.4:49484310-49484329 | None:intergenic | 40.0% | |
| GAGAGATGTCAGAAACTTTG+TGG | + | chr8.4:49482541-49482560 | MS.gene38950:CDS | 40.0% | |
| GAGCAATCAAGTTTCTTCGT+TGG | - | chr8.4:49482287-49482306 | None:intergenic | 40.0% | |
| GATGATTGACACCAACAAAC+GGG | - | chr8.4:49482802-49482821 | None:intergenic | 40.0% | |
| GCAAAAGAAAGACACCTTCT+TGG | + | chr8.4:49482563-49482582 | MS.gene38950:CDS | 40.0% | |
| GCAAACAACCGTGATTTAGT+TGG | - | chr8.4:49482389-49482408 | None:intergenic | 40.0% | |
| GGATCATAGCTTAAACACGA+TGG | + | chr8.4:49483978-49483997 | MS.gene38950:CDS | 40.0% | |
| GGATGATCGATCAATATAGG+AGG | - | chr8.4:49481963-49481982 | None:intergenic | 40.0% | |
| GTACACCCATGACAAGTATA+TGG | + | chr8.4:49483453-49483472 | MS.gene38950:CDS | 40.0% | |
| GTTGGATTCGTCTTCAAAGT+TGG | - | chr8.4:49482269-49482288 | None:intergenic | 40.0% | |
| TCAAGCACAATCATTCCATG+CGG | + | chr8.4:49483394-49483413 | MS.gene38950:CDS | 40.0% | |
| TCATAGCTTAAACACGATGG+AGG | + | chr8.4:49483981-49484000 | MS.gene38950:CDS | 40.0% | |
| TGATCGGTTACAATTCCCAT+TGG | - | chr8.4:49482929-49482948 | None:intergenic | 40.0% | |
| TGCATCAATGAGCAAAGATG+TGG | + | chr8.4:49484368-49484387 | MS.gene38950:CDS | 40.0% | |
| TGGTCATCTTAGAGTGAAAG+AGG | + | chr8.4:49483699-49483718 | MS.gene38950:CDS | 40.0% | |
| TGTTTCGAACAACCAGGTAA+AGG | - | chr8.4:49482879-49482898 | None:intergenic | 40.0% | |
| TTACCTGGTTGTTCGAAACA+TGG | + | chr8.4:49482879-49482898 | MS.gene38950:CDS | 40.0% | |
| TTCCCTCATTCTAGCAAAGT+AGG | - | chr8.4:49482618-49482637 | None:intergenic | 40.0% | |
| TTCCTAATACTAGGCATAGG+TGG | + | chr8.4:49482984-49483003 | MS.gene38950:CDS | 40.0% | |
| TTGTGTGTATGATTCTCTGC+GGG | + | chr8.4:49483090-49483109 | MS.gene38950:CDS | 40.0% | |
| TTTCGGTTGTCGAAGTAAGT+TGG | + | chr8.4:49484148-49484167 | MS.gene38950:intron | 40.0% | |
| ! | ACTCATTTTGCCCAACTTCT+TGG | - | chr8.4:49483932-49483951 | None:intergenic | 40.0% |
| ! | AGACATGCCCTTTTTGTACT+TGG | + | chr8.4:49483679-49483698 | MS.gene38950:CDS | 40.0% |
| ! | AGGAATACGAGGCAGATTTT+CGG | + | chr8.4:49483368-49483387 | MS.gene38950:CDS | 40.0% |
| ! | CATGGGCAATCCATTTTACT+AGG | + | chr8.4:49482821-49482840 | MS.gene38950:CDS | 40.0% |
| ! | CCCTTACGTGGTACTTTTAA+CGG | - | chr8.4:49484045-49484064 | None:intergenic | 40.0% |
| ! | GAATACCATTTTCGAAGAGC+GGG | + | chr8.4:49483180-49483199 | MS.gene38950:CDS | 40.0% |
| !! | ATTCCTTTTCAGCCTTGTCT+TGG | - | chr8.4:49483354-49483373 | None:intergenic | 40.0% |
| !! | CCGTTAAAAGTACCACGTAA+GGG | + | chr8.4:49484042-49484061 | MS.gene38950:CDS | 40.0% |
| !! | TCCGTTAAAAGTACCACGTA+AGG | + | chr8.4:49484041-49484060 | MS.gene38950:CDS | 40.0% |
| !! | TTAGAGGAGAGTATTGTCTG+TGG | + | chr8.4:49483559-49483578 | MS.gene38950:CDS | 40.0% |
| !!! | CGGGTTGATGATTTTGTTGT+TGG | + | chr8.4:49483109-49483128 | MS.gene38950:CDS | 40.0% |
| ACTCCAAGACAAGGCTGAAA+AGG | + | chr8.4:49483348-49483367 | MS.gene38950:CDS | 45.0% | |
| AGAAAGACACCTTCTTGGGA+AGG | + | chr8.4:49482568-49482587 | MS.gene38950:CDS | 45.0% | |
| ATTGTGGAATTTGACCCGCA+TGG | - | chr8.4:49483412-49483431 | None:intergenic | 45.0% | |
| CAAGCACAATCATTCCATGC+GGG | + | chr8.4:49483395-49483414 | MS.gene38950:CDS | 45.0% | |
| CAAGGCTGAAAAGGAATACG+AGG | + | chr8.4:49483357-49483376 | MS.gene38950:CDS | 45.0% | |
| CACCACCTATGCCTAGTATT+AGG | - | chr8.4:49482989-49483008 | None:intergenic | 45.0% | |
| CATCCTTTATTACCCCCTGA+CGG | + | chr8.4:49481978-49481997 | MS.gene38950:CDS | 45.0% | |
| CTATGAGATTGACATGGACG+AGG | + | chr8.4:49482655-49482674 | MS.gene38950:CDS | 45.0% | |
| GAACAACCAGGTAAAGGACT+TGG | - | chr8.4:49482873-49482892 | None:intergenic | 45.0% | |
| GCTTGAAACCCATCAGACAT+AGG | - | chr8.4:49484285-49484304 | None:intergenic | 45.0% | |
| GGATTCGTCTTCAAAGTTGG+TGG | - | chr8.4:49482266-49482285 | None:intergenic | 45.0% | |
| GGCTATGCAGAATGCAATTC+AGG | + | chr8.4:49482955-49482974 | MS.gene38950:CDS | 45.0% | |
| GGTTGTTCGAAACATGGCTA+AGG | + | chr8.4:49482885-49482904 | MS.gene38950:CDS | 45.0% | |
| TAAACGATCAGGCAGGTGTA+CGG | + | chr8.4:49482453-49482472 | MS.gene38950:CDS | 45.0% | |
| TAGCCATGTTTCGAACAACC+AGG | - | chr8.4:49482885-49482904 | None:intergenic | 45.0% | |
| TCATCCCAACAGTCAACTAG+TGG | + | chr8.4:49484330-49484349 | MS.gene38950:intron | 45.0% | |
| TCGGTTACAATTCCCATTGG+AGG | - | chr8.4:49482926-49482945 | None:intergenic | 45.0% | |
| TCTTTCCCGCTCTTCGAAAA+TGG | - | chr8.4:49483188-49483207 | None:intergenic | 45.0% | |
| TTACAGCCACATTGTGGTGT+GGG | + | chr8.4:49483952-49483971 | MS.gene38950:CDS | 45.0% | |
| TTTACAGCCACATTGTGGTG+TGG | + | chr8.4:49483951-49483970 | MS.gene38950:CDS | 45.0% | |
| TTTCGAAGAGCGGGAAAGAT+GGG | + | chr8.4:49483189-49483208 | MS.gene38950:CDS | 45.0% | |
| ! | CCTCTGTGTTGTTGACATTC+CGG | - | chr8.4:49483245-49483264 | None:intergenic | 45.0% |
| ! | GATCGCAAACCCTTGTTTCA+TGG | - | chr8.4:49482153-49482172 | None:intergenic | 45.0% |
| ! | TCTCGAAGGTGTGACTACAT+TGG | + | chr8.4:49483513-49483532 | MS.gene38950:CDS | 45.0% |
| ! | TTTTCGAAGAGCGGGAAAGA+TGG | + | chr8.4:49483188-49483207 | MS.gene38950:CDS | 45.0% |
| AAACGATCAGGCAGGTGTAC+GGG | + | chr8.4:49482454-49482473 | MS.gene38950:CDS | 50.0% | |
| ACACCAACAAACGGGGCAAA+TGG | - | chr8.4:49482794-49482813 | None:intergenic | 50.0% | |
| AGACACCTTCTTGGGAAGGA+AGG | + | chr8.4:49482572-49482591 | MS.gene38950:CDS | 50.0% | |
| ATGTCTTCGAGGCCTCCAAT+GGG | + | chr8.4:49482911-49482930 | MS.gene38950:CDS | 50.0% | |
| CATCTCCTTCCTTCCCAAGA+AGG | - | chr8.4:49482580-49482599 | None:intergenic | 50.0% | |
| CCGGAATGTCAACAACACAG+AGG | + | chr8.4:49483242-49483261 | MS.gene38950:CDS | 50.0% | |
| CGGCATCACATACCATGGAA+CGG | - | chr8.4:49482493-49482512 | None:intergenic | 50.0% | |
| CGTTCCATGGTATGTGATGC+CGG | + | chr8.4:49482491-49482510 | MS.gene38950:CDS | 50.0% | |
| CTAGGCATAGGTGGTGTCTA+TGG | + | chr8.4:49482993-49483012 | MS.gene38950:CDS | 50.0% | |
| GACGTCCTCGAACTAATCGT+CGG | + | chr8.4:49484064-49484083 | MS.gene38950:CDS | 50.0% | |
| GGCTAAGGTGTATGTCTTCG+AGG | + | chr8.4:49482900-49482919 | MS.gene38950:CDS | 50.0% | |
| TATGTCTTCGAGGCCTCCAA+TGG | + | chr8.4:49482910-49482929 | MS.gene38950:CDS | 50.0% | |
| TCTCCGTCAGGGGGTAATAA+AGG | - | chr8.4:49481984-49482003 | None:intergenic | 50.0% | |
| TGGGAAGGAAGGAGATGACA+GGG | + | chr8.4:49482583-49482602 | MS.gene38950:CDS | 50.0% | |
| TTGGGAAGGAAGGAGATGAC+AGG | + | chr8.4:49482582-49482601 | MS.gene38950:CDS | 50.0% | |
| ! | AACTCTAAGAAAGGGGCCGA+TGG | + | chr8.4:49482182-49482201 | MS.gene38950:CDS | 50.0% |
| ! | ATGCCATTTGCCCCGTTTGT+TGG | + | chr8.4:49482788-49482807 | MS.gene38950:CDS | 50.0% |
| ! | CGTGTTGACGTTTCGGATTC+CGG | + | chr8.4:49482023-49482042 | MS.gene38950:CDS | 50.0% |
| ! | CTGCATAGCCTTGCACTGAT+CGG | - | chr8.4:49482945-49482964 | None:intergenic | 50.0% |
| ! | GACAACCGACGATTAGTTCG+AGG | - | chr8.4:49484072-49484091 | None:intergenic | 50.0% |
| ! | GTGTTGACGTTTCGGATTCC+GGG | + | chr8.4:49482024-49482043 | MS.gene38950:CDS | 50.0% |
| !! | TCTGATGGGTTTCAAGCGTC+CGG | + | chr8.4:49484288-49484307 | MS.gene38950:intron | 50.0% |
| ACCACCGGCATCACATACCA+TGG | - | chr8.4:49482498-49482517 | None:intergenic | 55.0% | |
| AGCCACATTGTGGTGTGGGA+GGG | + | chr8.4:49483956-49483975 | MS.gene38950:CDS | 55.0% | |
| CGACAACGCACTCCAAGACA+AGG | + | chr8.4:49483339-49483358 | MS.gene38950:CDS | 55.0% | |
| TCCATGGTATGTGATGCCGG+TGG | + | chr8.4:49482494-49482513 | MS.gene38950:CDS | 55.0% | |
| TCTGGGCTGATGCACGTTGT+AGG | + | chr8.4:49482699-49482718 | MS.gene38950:CDS | 55.0% | |
| ! | ATCAGCTAGCTCTCCGTCAG+GGG | - | chr8.4:49481994-49482013 | None:intergenic | 55.0% |
| ! | CATCAGCTAGCTCTCCGTCA+GGG | - | chr8.4:49481995-49482014 | None:intergenic | 55.0% |
| ! | TGCGGCTCGTGTTGACGTTT+CGG | + | chr8.4:49482016-49482035 | MS.gene38950:CDS | 55.0% |
| CAGCCACATTGTGGTGTGGG+AGG | + | chr8.4:49483955-49483974 | MS.gene38950:CDS | 60.0% | |
| CCTGACGGAGAGCTAGCTGA+TGG | + | chr8.4:49481993-49482012 | MS.gene38950:CDS | 60.0% | |
| GCCACATTGTGGTGTGGGAG+GGG | + | chr8.4:49483957-49483976 | MS.gene38950:CDS | 60.0% | |
| GTTCGAGGACGTCCCTTACG+TGG | - | chr8.4:49484057-49484076 | None:intergenic | 60.0% | |
| TCCCCTCCCACACCACAATG+TGG | - | chr8.4:49483961-49483980 | None:intergenic | 60.0% | |
| ! | CCATCAGCTAGCTCTCCGTC+AGG | - | chr8.4:49481996-49482015 | None:intergenic | 60.0% |
| ! | CGGAGAGCTAGCTGATGGTG+CGG | + | chr8.4:49481998-49482017 | MS.gene38950:CDS | 60.0% |
| ! | TCAGCTAGCTCTCCGTCAGG+GGG | - | chr8.4:49481993-49482012 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 49481948 | 49484407 | 49481948 | ID=MS.gene38950 |
| chr8.4 | mRNA | 49481948 | 49484407 | 49481948 | ID=MS.gene38950.t1;Parent=MS.gene38950 |
| chr8.4 | exon | 49481948 | 49484161 | 49481948 | ID=MS.gene38950.t1.exon1;Parent=MS.gene38950.t1 |
| chr8.4 | CDS | 49481948 | 49484161 | 49481948 | ID=cds.MS.gene38950.t1;Parent=MS.gene38950.t1 |
| chr8.4 | exon | 49484342 | 49484407 | 49484342 | ID=MS.gene38950.t1.exon2;Parent=MS.gene38950.t1 |
| chr8.4 | CDS | 49484342 | 49484407 | 49484342 | ID=cds.MS.gene38950.t1;Parent=MS.gene38950.t1 |
| Gene Sequence |
| Protein sequence |
