AlfalfaGEDB | MS.gene38950

M. sativa cultivar XinJiangDaYe / MS.gene38950

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18 PF04434.20 PF10551.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38950.t1	XP_014518279.1	55	700	309	1	39	732	27	726	1.10E-228	803.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38950.t1	Q9SWG3	35.1	607	373	10	48	644	51	646	3.4e-106	387.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38950.t1	A0A1S3VJK5	55.0	700	309	1	39	732	27	726	7.9e-229	803.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene38950.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38950.t1	MTR_6g051425	29.603	277	178	6	50	313	19	291	2.71e-34	134
MS.gene38950.t1	MTR_0856s0010	43.023	172	84	4	3	173	2	160	3.59e-33	125
MS.gene38950.t1	MTR_4g035820	30.743	296	179	12	9	288	39	324	2.24e-25	112
MS.gene38950.t1	MTR_0558s0020	25.260	289	182	8	30	284	8	296	1.29e-21	96.7
MS.gene38950.t1	MTR_7g446060	51.220	82	40	0	130	211	7	88	6.22e-20	87.0
MS.gene38950.t1	MTR_1g070355	28.085	235	154	7	54	278	80	309	3.60e-19	92.4
MS.gene38950.t1	MTR_8g446020	24.576	236	157	4	52	284	39	256	2.65e-17	82.8
MS.gene38950.t1	MTR_6g022070	28.966	145	99	1	338	482	1	141	4.23e-17	84.0
MS.gene38950.t1	MTR_3g450850	26.481	287	192	8	2	272	3	286	1.04e-16	82.8
MS.gene38950.t1	MTR_7g446480	31.395	172	117	1	122	292	143	314	1.52e-16	82.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38950.t1	AT4G15090	35.091	607	373	10	48	644	51	646	1.53e-121	384
MS.gene38950.t1	AT4G15090	35.091	607	373	10	48	644	51	646	1.53e-121	384
MS.gene38950.t1	AT4G15090	35.091	607	373	10	48	644	51	646	1.53e-121	384
MS.gene38950.t1	AT4G15090	35.091	607	373	10	48	644	51	646	1.53e-121	384
MS.gene38950.t1	AT4G15090	35.091	607	373	10	48	644	51	646	1.53e-121	384
MS.gene38950.t1	AT4G38180	31.842	760	465	18	8	736	38	775	4.42e-120	379
MS.gene38950.t1	AT3G22170	32.104	651	383	11	18	643	35	651	1.91e-110	355
MS.gene38950.t1	AT3G22170	32.104	651	383	11	18	643	35	651	1.91e-110	355
MS.gene38950.t1	AT1G76320	32.198	587	374	9	52	633	1	568	9.26e-105	336
MS.gene38950.t1	AT1G76320	32.198	587	374	9	52	633	1	568	2.04e-104	337

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Find 148 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAGAAACTCTAAGAA+AGG	0.460138	8.4:+49482173	MS.gene38950:CDS
AAACGATCAGGCAGGTGTAC+GGG	0.512319	8.4:+49482454	MS.gene38950:CDS
AAACTAGAAACTCTAAGAAA+GGG	0.460938	8.4:+49482174	MS.gene38950:CDS
AAAGGATACGCACAATACAA+AGG	0.637659	8.4:+49483046	MS.gene38950:CDS
AAAGGATGATCGATCAATAT+AGG	0.415391	8.4:-49481963	None:intergenic
AAATGCAACTGTTATCTCGA+AGG	0.615193	8.4:+49483499	MS.gene38950:CDS
AAATGGTCTACCAAGAAGTT+GGG	0.502052	8.4:+49483919	MS.gene38950:CDS
AACATCACCAAAGTATTCAT+AGG	0.473828	8.4:-49482726	None:intergenic
AACTAGAAACTCTAAGAAAG+GGG	0.633083	8.4:+49482175	MS.gene38950:CDS
AACTCTAAGAAAGGGGCCGA+TGG	0.560180	8.4:+49482182	MS.gene38950:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGATGATCGATCAATAT+AGG	-	chr8.4:49481966-49481985	None:intergenic	30.0%
AAGATGACCAAGTACAAAAA+GGG	-	chr8.4:49483689-49483708	None:intergenic	30.0%
ACACAATACTTAGTTTCGTT+CGG	-	chr8.4:49483589-49483608	None:intergenic	30.0%
AGATAAGTCCAACTAAATCA+CGG	+	chr8.4:49482378-49482397	MS.gene38950:CDS	30.0%
AGATACAAGTAGAATTTCGT+GGG	+	chr8.4:49483476-49483495	MS.gene38950:CDS	30.0%
CATTTCTTCATACAAATCAG+AGG	-	chr8.4:49483896-49483915	None:intergenic	30.0%
TAAGATGACCAAGTACAAAA+AGG	-	chr8.4:49483690-49483709	None:intergenic	30.0%
TATCTCCATATACTTGTCAT+GGG	-	chr8.4:49483461-49483480	None:intergenic	30.0%
TTAAAAGACATACCGATAGT+AGG	-	chr8.4:49482092-49482111	None:intergenic	30.0%
TTATGAAATTGCAGAATGTG+CGG	+	chr8.4:49483852-49483871	MS.gene38950:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	49481948	49484407	49481948	ID=MS.gene38950
chr8.4	mRNA	49481948	49484407	49481948	ID=MS.gene38950.t1;Parent=MS.gene38950
chr8.4	exon	49481948	49484161	49481948	ID=MS.gene38950.t1.exon1;Parent=MS.gene38950.t1
chr8.4	CDS	49481948	49484161	49481948	ID=cds.MS.gene38950.t1;Parent=MS.gene38950.t1
chr8.4	exon	49484342	49484407	49484342	ID=MS.gene38950.t1.exon2;Parent=MS.gene38950.t1
chr8.4	CDS	49484342	49484407	49484342	ID=cds.MS.gene38950.t1;Parent=MS.gene38950.t1

Gene Sequence

>MS.gene38950

ATGGCTGATGGTCCTCCTATATTGATCGATCATCCTTTATTACCCCCTGACGGAGAGCTAGCTGATGGTGCGGCTCGTGTTGACGTTTCGGATTCCGGGACCTTTGAAACAACAAATGCTGTCGCAACAGATAAATTCACGCCTACTATCGGTATGTCTTTTAAATCGGTTGCAGATTGTAAGTCTTTTTACCGTGAATATGCCATGAAACAAGGGTTTGCGATCAAAACTAGAAACTCTAAGAAAGGGGCCGATGGCATGTTAAAATATTTCATTCTAACTTGTGCAAGAGAAGGTCACCATGAATCAAACATACCACCAACTTTGAAGACGAATCCAACGAAGAAACTTGATTGCTCAGCTAAGATAACGGTTGCTTTAAAGAAGGGTCTATGGACTATTTTGTCTTTTAATTCATGTCATAATCATGAGATAAGTCCAACTAAATCACGGTTGTTTGCTGGCAATAAGAAGATTGATATGCATGCACAGCGGACAATTTTGATAAACGATCAGGCAGGTGTACGGGTGAACAAAAGTTTCCGTTCCATGGTATGTGATGCCGGTGGTTACGAAAATCTAACATTTGTGGAGAGAGATGTCAGAAACTTTGTGGCAAAAGAAAGACACCTTCTTGGGAAGGAAGGAGATGACAGGGCACTTTTATCCTACTTTGCTAGAATGAGGGAATGCAACAAAGACTTTTTCTATGAGATTGACATGGACGAGGACTTTCATGTGCAGAATATTTTCTGGGCTGATGCACGTTGTAGGTCTGCCTATGAATACTTTGGTGATGTTGTCACATTCGATACCACGTACTTGACAAACAAGTATGACATGCCATTTGCCCCGTTTGTTGGTGTCAATCATCATGGGCAATCCATTTTACTAGGTTGCGGTCTTTTATCATCTGAAGATACCAAGTCCTTTACCTGGTTGTTCGAAACATGGCTAAGGTGTATGTCTTCGAGGCCTCCAATGGGAATTGTAACCGATCAGTGCAAGGCTATGCAGAATGCAATTCAGGTTGTGTTTCCTAATACTAGGCATAGGTGGTGTCTATGGCATATAATGAGAAAAATTGCCGAAAAATTGAAAGGATACGCACAATACAAAGGAATAAAAAATGATATGAAAAATTGTGTGTATGATTCTCTGCGGGTTGATGATTTTGTTGTTGGGTGGACAACATTCATTGAAAAATATGGTTTGGGTGAAAATGATTGGTTGAATACCATTTTCGAAGAGCGGGAAAGATGGGTGCCATGTTATTTAAAAAATGATTTCTGGGCCGGAATGTCAACAACACAGAGGAGTGAAAGTATGAATGCTTTTTTCGATGGTTACATTAATGCAAGAACTTCTCTAAGCGAATTTGTAAAGCAATACGACAACGCACTCCAAGACAAGGCTGAAAAGGAATACGAGGCAGATTTTCGGTCTTCAAGCACAATCATTCCATGCGGGTCAAATTCCACAATCGAGAGACAATTTCAAGCCGAGTACACCCATGACAAGTATATGGAGATACAAGTAGAATTTCGTGGGAAATGCAACTGTTATCTCGAAGGTGTGACTACATTGGAATTTACATCTACATACACCGTTTTAGAGGAGAGTATTGTCTGTGGTAAACCGAACGAAACTAAGTATTGTGTTGATTTCAACGGGGAAGACAATAATGTTACGTGCACTTGTTTGTTGTTTGAGTTCAGAGGCATTTTGTGTAGACATGCCCTTTTTGTACTTGGTCATCTTAGAGTGAAAGAGGTTCCGTCTAAATTTATCTTGCCACGATGGAGTAAAAATGTGAAGAGAAAATATGCACACATGAAGACAAGTTACAATGCCAAAAAACTACAACCACACATAGAAAGATTTGAAGGTCTTTGCAAGACATTTTATGAAATTGCAGAATGTGCGGCTGAGACACCTAGTCAAACCTCTGATTTGTATGAAGAAATGATCAAATGGTCTACCAAGAAGTTGGGCAAAATGAGTTTACAGCCACATTGTGGTGTGGGAGGGGATCATAGCTTAAACACGATGGAGGACTCATTATCACAGCAACCTGAACAACCAATTCTTAATCCGTTAAAAGTACCACGTAAGGGACGTCCTCGAACTAATCGTCGGTTGTCCACCACTGAAAAGATTGTGAAAAAAAGAAGCAAAATGCAAAGAAAAAAACCAATTGTTTCGGTTGTCGAAGTAAGTTGGTGTTAACCTATTATTATTGTGATTACATTTGTTTTTTTAATAATAATACAATGTTAATTATGTTAAATGTAATTAATATTTCACTCTGTAATACTACAACCTACATTACTTCCTATGTCTGATGGGTTTCAAGCGTCCGGTGATACGCTTAACTACTTCTCATCCCAACAGTCAACTAGTGGTTTTATGTCATTACTTGCATCAATGAGCAAAGATGTGGACGCAGCTGAATTTTAA

Protein sequence

>MS.gene38950.t1

MADGPPILIDHPLLPPDGELADGAARVDVSDSGTFETTNAVATDKFTPTIGMSFKSVADCKSFYREYAMKQGFAIKTRNSKKGADGMLKYFILTCAREGHHESNIPPTLKTNPTKKLDCSAKITVALKKGLWTILSFNSCHNHEISPTKSRLFAGNKKIDMHAQRTILINDQAGVRVNKSFRSMVCDAGGYENLTFVERDVRNFVAKERHLLGKEGDDRALLSYFARMRECNKDFFYEIDMDEDFHVQNIFWADARCRSAYEYFGDVVTFDTTYLTNKYDMPFAPFVGVNHHGQSILLGCGLLSSEDTKSFTWLFETWLRCMSSRPPMGIVTDQCKAMQNAIQVVFPNTRHRWCLWHIMRKIAEKLKGYAQYKGIKNDMKNCVYDSLRVDDFVVGWTTFIEKYGLGENDWLNTIFEERERWVPCYLKNDFWAGMSTTQRSESMNAFFDGYINARTSLSEFVKQYDNALQDKAEKEYEADFRSSSTIIPCGSNSTIERQFQAEYTHDKYMEIQVEFRGKCNCYLEGVTTLEFTSTYTVLEESIVCGKPNETKYCVDFNGEDNNVTCTCLLFEFRGILCRHALFVLGHLRVKEVPSKFILPRWSKNVKRKYAHMKTSYNAKKLQPHIERFEGLCKTFYEIAECAAETPSQTSDLYEEMIKWSTKKLGKMSLQPHCGVGGDHSLNTMEDSLSQQPEQPILNPLKVPRKGRPRTNRRLSTTEKIVKKRSKMQRKKPIVSVVESTSGFMSLLASMSKDVDAAEF