AlfalfaGEDB | MS.gene39032

M. sativa cultivar XinJiangDaYe / MS.gene39032

KEGG: K11644
GO: GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02671.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39032.t1	AES81182.2	90.2	123	12	0	1	123	1	123	6.40E-46	193.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39032.t1	O04539	53.6	69	32	0	16	84	14	82	1.6e-13	77.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39032.t1	G7KQP2	90.2	123	12	0	1	123	1	123	4.6e-46	193.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene39032.t1	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39032.t1	MTR_7g089490	91.870	123	10	0	1	123	1	123	1.65e-69	204
MS.gene39032.t1	MTR_1g105955	46.753	77	41	0	7	83	7	83	1.48e-18	77.0
MS.gene39032.t1	MTR_1g104940	52.941	68	32	0	17	84	15	82	8.91e-18	73.6
MS.gene39032.t1	MTR_1g105010	35.714	112	72	0	1	112	1	112	4.56e-17	71.6
MS.gene39032.t1	MTR_1g105960	51.471	68	33	0	17	84	2	69	3.88e-16	68.9
MS.gene39032.t1	MTR_5g036670	45.122	82	44	1	13	94	40	120	1.72e-15	71.6
MS.gene39032.t1	MTR_6g008970	38.835	103	58	1	13	115	60	157	4.57e-15	70.5
MS.gene39032.t1	MTR_8g062700	47.222	72	38	0	13	84	39	110	3.82e-14	67.8
MS.gene39032.t1	MTR_8g062700	47.222	72	38	0	13	84	39	110	3.94e-14	67.8
MS.gene39032.t1	MTR_6g008995	45.588	68	37	0	16	83	37	104	9.44e-12	60.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39032.t1	AT1G70060	50.000	80	39	1	5	84	4	82	6.37e-17	75.9
MS.gene39032.t1	AT1G70060	50.000	80	39	1	5	84	4	82	6.37e-17	75.9
MS.gene39032.t1	AT1G24190	48.611	72	37	0	13	84	11	82	3.72e-16	73.6
MS.gene39032.t1	AT1G24190	48.611	72	37	0	13	84	11	82	3.80e-16	73.6
MS.gene39032.t1	AT1G24190	48.611	72	37	0	13	84	11	82	3.80e-16	73.6
MS.gene39032.t1	AT3G01320	39.000	100	55	1	13	112	54	147	2.44e-14	68.6
MS.gene39032.t1	AT3G01320	39.000	100	55	1	13	112	54	147	2.64e-14	68.6
MS.gene39032.t1	AT5G15020	45.833	72	39	0	13	84	49	120	2.73e-13	65.5
MS.gene39032.t1	AT5G15020	45.833	72	39	0	13	84	49	120	2.81e-13	65.5
MS.gene39032.t1	AT4G12020	43.182	88	46	2	16	103	308	391	5.30e-13	64.7

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Find 19 sgRNAs with CRISPR-Local

Find 19 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGTTGAGTTTGAAGACAAG+GGG	0.524765	7.2:+19068588	MS.gene39032:CDS
ACTCTAAGAATTGATGCAGA+AGG	0.617661	7.2:+19068653	MS.gene39032:CDS
AGAAGTTGAGTTTGAAGACA+AGG	0.554796	7.2:+19068586	MS.gene39032:CDS
AGGAGCTGTTTAAAGAGCAT+AGG	0.577489	7.2:+19068693	MS.gene39032:CDS
AGGTGCCAAAGCAAGACTAG+AGG	0.633525	7.2:+19068673	MS.gene39032:CDS
AGTTGAGTTTGAAGACAAGG+GGG	0.616965	7.2:+19068589	MS.gene39032:CDS
ATTCAACTCCTTAACACTAA+AGG	0.462934	7.2:+19068730	MS.gene39032:CDS
CAGCTCCTCTAGTCTTGCTT+TGG	0.436290	7.2:-19068678	None:intergenic
CTCTTTGCAATGAAGGAGTA+TGG	0.318761	7.2:+19068506	None:intergenic
GAAGTTGAGTTTGAAGACAA+GGG	0.518593	7.2:+19068587	MS.gene39032:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTCAACTCCTTAACACTAA+AGG	+	chr7.2:19068730-19068749	MS.gene39032:CDS	30.0%
GAGTTTCTAAATGTGATGAA+CGG	+	chr7.2:19068623-19068642	MS.gene39032:CDS	30.0%
GATGCATTAGCATTTGTAAA+GGG	+	chr7.2:19068560-19068579	MS.gene39032:CDS	30.0%
TCAGAATCTACAAAGCATAA+AGG	+	chr7.2:19068538-19068557	MS.gene39032:CDS	30.0%
TTCAACTCCTTAACACTAAA+GGG	+	chr7.2:19068731-19068750	MS.gene39032:CDS	30.0%
AAGTTGAGTTTGAAGACAAG+GGG	+	chr7.2:19068588-19068607	MS.gene39032:CDS	35.0%
AGAAGTTGAGTTTGAAGACA+AGG	+	chr7.2:19068586-19068605	MS.gene39032:CDS	35.0%
GAAGTTGAGTTTGAAGACAA+GGG	+	chr7.2:19068587-19068606	MS.gene39032:CDS	35.0%
GGATGCATTAGCATTTGTAA+AGG	+	chr7.2:19068559-19068578	MS.gene39032:CDS	35.0%
TTGAGATCCCTTTAGTGTTA+AGG	-	chr7.2:19068741-19068760	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	19068515	19068886	19068515	ID=MS.gene39032
chr7.2	mRNA	19068515	19068886	19068515	ID=MS.gene39032.t1;Parent=MS.gene39032
chr7.2	exon	19068515	19068886	19068515	ID=MS.gene39032.t1.exon1;Parent=MS.gene39032.t1
chr7.2	CDS	19068515	19068886	19068515	ID=cds.MS.gene39032.t1;Parent=MS.gene39032.t1

Gene Sequence	>MS.gene39032 ATGAAGGAGTATGGCTATGCTCATCAGAATCTACAAAGCATAAAGGATGCATTAGCATTTGTAAAGGGTGTAGAAGTTGAGTTTGAAGACAAGGGGGATAAGTATGATGAGTTTCTAAATGTGATGAACGGTTTCAAGACTCTAAGAATTGATGCAGAAGGTGCCAAAGCAAGACTAGAGGAGCTGTTTAAAGAGCATAGGCATTTAATTGTGAGATTCAACTCCTTAACACTAAAGGGATCTCAAATCACTAAGCTTGGTTATGAGACTGAAGAGGAAGAAGACATGGAAATACTTGACAAACTTGAGAAACTAGAGTCAGCACTTCAACTTATTTTAGAAGTTTTGGTGATCAAGAAGAAGCAAGCATAG
Protein sequence	>MS.gene39032.t1 MKEYGYAHQNLQSIKDALAFVKGVEVEFEDKGDKYDEFLNVMNGFKTLRIDAEGAKARLEELFKEHRHLIVRFNSLTLKGSQITKLGYETEEEEDMEILDKLEKLESALQLILEVLVIKKKQA