Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39120.t1 | XP_003625051.2 | 94.3 | 209 | 11 | 1 | 1 | 208 | 14 | 222 | 3.00E-99 | 371.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39120.t1 | Q9M1K1 | 47.6 | 189 | 89 | 4 | 26 | 209 | 44 | 227 | 1.0e-34 | 148.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39120.t1 | G7KRQ0 | 94.3 | 209 | 11 | 1 | 1 | 208 | 14 | 222 | 2.2e-99 | 371.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene39120.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39120.t1 | MTR_7g090410 | 93.810 | 210 | 12 | 1 | 1 | 209 | 14 | 223 | 1.62e-115 | 330 |
| MS.gene39120.t1 | MTR_1g048720 | 71.875 | 160 | 42 | 2 | 51 | 208 | 63 | 221 | 1.89e-73 | 223 |
| MS.gene39120.t1 | MTR_1g048720 | 72.785 | 158 | 40 | 2 | 51 | 206 | 63 | 219 | 2.37e-73 | 221 |
| MS.gene39120.t1 | MTR_1g048750 | 66.864 | 169 | 53 | 2 | 51 | 217 | 55 | 222 | 1.24e-71 | 219 |
| MS.gene39120.t1 | MTR_1g048720 | 71.250 | 160 | 42 | 3 | 51 | 208 | 63 | 220 | 5.84e-71 | 216 |
| MS.gene39120.t1 | MTR_1g048720 | 72.152 | 158 | 40 | 3 | 51 | 206 | 63 | 218 | 7.44e-71 | 215 |
| MS.gene39120.t1 | MTR_1g048710 | 70.186 | 161 | 44 | 3 | 51 | 209 | 55 | 213 | 4.53e-64 | 199 |
| MS.gene39120.t1 | MTR_0007s0330 | 32.716 | 162 | 100 | 4 | 53 | 212 | 6 | 160 | 3.54e-12 | 62.8 |
| MS.gene39120.t1 | MTR_0007s0330 | 34.211 | 152 | 91 | 4 | 53 | 202 | 18 | 162 | 8.11e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39120.t1 | AT3G56970 | 46.535 | 202 | 92 | 5 | 19 | 209 | 31 | 227 | 3.32e-49 | 161 |
| MS.gene39120.t1 | AT3G56980 | 50.575 | 174 | 78 | 3 | 38 | 209 | 65 | 232 | 3.34e-40 | 138 |
| MS.gene39120.t1 | AT2G41240 | 45.312 | 192 | 91 | 4 | 24 | 207 | 32 | 217 | 3.73e-39 | 135 |
| MS.gene39120.t1 | AT2G41240 | 44.792 | 192 | 91 | 5 | 24 | 207 | 32 | 216 | 9.54e-37 | 129 |
| MS.gene39120.t1 | AT5G04150 | 44.720 | 161 | 80 | 3 | 50 | 206 | 83 | 238 | 3.06e-36 | 127 |
| MS.gene39120.t1 | AT5G04150 | 44.444 | 162 | 81 | 3 | 50 | 207 | 83 | 239 | 5.52e-36 | 127 |
Find 34 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTCTTGGCCATAAGTTT+AGG | 0.279241 | 7.4:+18381355 | None:intergenic |
| AGCATTGTGGTTAAGCTTCT+TGG | 0.288890 | 7.4:+18381342 | None:intergenic |
| GCTTCTTGGCCATAAGTTTA+GGG | 0.303457 | 7.4:+18381356 | None:intergenic |
| TCACTTCGTTCACTTCTTCC+CGG | 0.311784 | 7.4:-18381277 | MS.gene39120:CDS |
| TCTTCTTCTTCTAAAACCTT+TGG | 0.334379 | 7.4:-18380127 | MS.gene39120:CDS |
| TCAATCTCAACATGTTCCTT+TGG | 0.352411 | 7.4:+18381391 | None:intergenic |
| ATCATGTTAAAGACCACATT+TGG | 0.371879 | 7.4:+18378512 | None:intergenic |
| GCCACCATCCCCTAAACTTA+TGG | 0.372270 | 7.4:-18381365 | MS.gene39120:CDS |
| TTGATGTGTTTAGAAAATAA+TGG | 0.374175 | 7.4:-18380166 | MS.gene39120:CDS |
| AAGACACGTGAAATTGTTAC+CGG | 0.393671 | 7.4:+18380418 | None:intergenic |
| AAACATGGGATGGCTCTTAG+AGG | 0.417919 | 7.4:-18381500 | None:intergenic |
| TATTACCGTTTGATCTTCAC+CGG | 0.440214 | 7.4:+18381258 | None:intergenic |
| GGGATGGCTCTTAGAGGAGT+TGG | 0.478368 | 7.4:-18381494 | MS.gene39120:CDS |
| CTCAGATAGAGGAATCTTGT+AGG | 0.481665 | 7.4:+18380192 | None:intergenic |
| TCTTCTTCTAAAACCTTTGG+AGG | 0.482465 | 7.4:-18380124 | MS.gene39120:CDS |
| CACATCAAGATCTCAGATAG+AGG | 0.501569 | 7.4:+18380181 | None:intergenic |
| TTGGCCATAAGTTTAGGGGA+TGG | 0.512241 | 7.4:+18381361 | None:intergenic |
| AGGAACATGTTGAGATTGAA+AGG | 0.537866 | 7.4:-18381387 | MS.gene39120:CDS |
| GCCATAAGTTTAGGGGATGG+TGG | 0.542896 | 7.4:+18381364 | None:intergenic |
| CTTCTAAAACCTTTGGAGGG+AGG | 0.546758 | 7.4:-18380120 | MS.gene39120:CDS |
| ACGTGTCTTAAAGTACATAC+CGG | 0.558220 | 7.4:-18380404 | MS.gene39120:CDS |
| ACAAAAGCAGAATTGTAACT+TGG | 0.558897 | 7.4:+18380274 | None:intergenic |
| CTTCTTCTAAAACCTTTGGA+GGG | 0.566421 | 7.4:-18380123 | MS.gene39120:CDS |
| TCTTCCCGGTGAAGATCAAA+CGG | 0.568161 | 7.4:-18381263 | MS.gene39120:intron |
| ATAGAAGAGCCTCCCTCCAA+AGG | 0.569392 | 7.4:+18380111 | None:intergenic |
| GGTGAAGAGAATTGATGATA+CGG | 0.572582 | 7.4:+18381412 | None:intergenic |
| CTTCTTGGCCATAAGTTTAG+GGG | 0.575873 | 7.4:+18381357 | None:intergenic |
| TCTCATACTCAAACATGGGA+TGG | 0.596383 | 7.4:-18381510 | None:intergenic |
| GTAATTCAAATTACCAAATG+TGG | 0.602111 | 7.4:-18378525 | MS.gene39120:CDS |
| GATTTACAAAAGCAAGTGCA+AGG | 0.608962 | 7.4:-18380382 | MS.gene39120:CDS |
| TCATCAATTCTCTTCACCAA+AGG | 0.612543 | 7.4:-18381407 | MS.gene39120:CDS |
| CAGTTAACAAAGAATCGCAA+AGG | 0.655004 | 7.4:-18380306 | MS.gene39120:CDS |
| ATTACCGTTTGATCTTCACC+GGG | 0.685907 | 7.4:+18381259 | None:intergenic |
| GATCACGTTCACTAGCATTG+TGG | 0.694395 | 7.4:+18381329 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATATATTAATTAAAAGTTT+AGG | - | chr7.4:18380284-18380303 | MS.gene39120:CDS | 10.0% |
| !!! | TTTTGGTTAAATTTTTATTT+TGG | + | chr7.4:18379149-18379168 | None:intergenic | 10.0% |
| !! | TTCAAAATAAAAGTTTCTTA+AGG | - | chr7.4:18381405-18381424 | MS.gene39120:CDS | 15.0% |
| !! | TTCTTGAAACAAAATTATAT+AGG | + | chr7.4:18380958-18380977 | None:intergenic | 15.0% |
| !!! | AAGCTATTTTTTAAAATGAT+AGG | - | chr7.4:18378873-18378892 | MS.gene39120:intron | 15.0% |
| !!! | AATTTATTTTGCAAACATTT+TGG | + | chr7.4:18379166-18379185 | None:intergenic | 15.0% |
| !!! | AGATAAACATCTTATTTTAT+AGG | - | chr7.4:18381458-18381477 | MS.gene39120:CDS | 15.0% |
| !!! | ATAGCTAATTATTCTTTTAA+AGG | - | chr7.4:18379295-18379314 | MS.gene39120:intron | 15.0% |
| !!! | ATTTTACCATAATAATATAG+TGG | + | chr7.4:18380394-18380413 | None:intergenic | 15.0% |
| !!! | TTAATTAAAAGTTTAGGATT+TGG | - | chr7.4:18380290-18380309 | MS.gene39120:CDS | 15.0% |
| !!! | TTTTACCATAATAATATAGT+GGG | + | chr7.4:18380393-18380412 | None:intergenic | 15.0% |
| !! | AAGCAGAAAAATAATCATTT+GGG | - | chr7.4:18380231-18380250 | MS.gene39120:CDS | 20.0% |
| !! | ACGATTTCATTTATAAGAAA+CGG | - | chr7.4:18380842-18380861 | MS.gene39120:intron | 20.0% |
| !! | GATACCAATTTATAGAAAAT+TGG | + | chr7.4:18378798-18378817 | None:intergenic | 20.0% |
| !! | TAAAGGGATAAATTAAGTAA+AGG | - | chr7.4:18380778-18380797 | MS.gene39120:intron | 20.0% |
| !! | TTGATGTGTTTAGAAAATAA+TGG | - | chr7.4:18379848-18379867 | MS.gene39120:intron | 20.0% |
| !! | TTTACCATAATAATATAGTG+GGG | + | chr7.4:18380392-18380411 | None:intergenic | 20.0% |
| !!! | AGAAACTTTTATTTTGAAAG+AGG | + | chr7.4:18381403-18381422 | None:intergenic | 20.0% |
| !!! | AGTTTTAATCTGACTTTTAT+TGG | - | chr7.4:18379030-18379049 | MS.gene39120:intron | 20.0% |
| !!! | ATTTTGATCTAGTTGAATTA+AGG | + | chr7.4:18380748-18380767 | None:intergenic | 20.0% |
| !!! | TAACCTACTTTAAGAAAAAA+GGG | - | chr7.4:18379340-18379359 | MS.gene39120:intron | 20.0% |
| !!! | TAGTACATATTTTAATAGCA+CGG | - | chr7.4:18380330-18380349 | MS.gene39120:CDS | 20.0% |
| !!! | TTTCATTCATTTAATTTGCT+AGG | + | chr7.4:18380530-18380549 | None:intergenic | 20.0% |
| ! | ACTTAATTTATCCCTTTATC+TGG | + | chr7.4:18380776-18380795 | None:intergenic | 25.0% |
| ! | CAAAATACAAACCAGATAAA+GGG | - | chr7.4:18380762-18380781 | MS.gene39120:intron | 25.0% |
| ! | CAAAATTGTTTACTCTTTCA+TGG | - | chr7.4:18381199-18381218 | MS.gene39120:intron | 25.0% |
| ! | CCAATTTATAGAAAATTGGA+AGG | + | chr7.4:18378794-18378813 | None:intergenic | 25.0% |
| ! | CCCTAATTGTTTACTATTAA+GGG | - | chr7.4:18380066-18380085 | MS.gene39120:intron | 25.0% |
| ! | CCCTTAATAGTAAACAATTA+GGG | + | chr7.4:18380069-18380088 | None:intergenic | 25.0% |
| ! | GAAGCAGAAAAATAATCATT+TGG | - | chr7.4:18380230-18380249 | MS.gene39120:CDS | 25.0% |
| ! | GTAAAATTAATAGAGCTAGT+AGG | - | chr7.4:18380407-18380426 | MS.gene39120:CDS | 25.0% |
| ! | GTAATTCAAATTACCAAATG+TGG | - | chr7.4:18381489-18381508 | MS.gene39120:CDS | 25.0% |
| ! | TATGTGCAAAAAATTAGAGA+TGG | - | chr7.4:18379247-18379266 | MS.gene39120:intron | 25.0% |
| ! | TCAAAATACAAACCAGATAA+AGG | - | chr7.4:18380761-18380780 | MS.gene39120:intron | 25.0% |
| ! | TCCCTTAATAGTAAACAATT+AGG | + | chr7.4:18380070-18380089 | None:intergenic | 25.0% |
| ! | TGACGTATTCATAATATGAA+TGG | - | chr7.4:18379470-18379489 | MS.gene39120:intron | 25.0% |
| ! | TTAAGGTAACCTTAAAAACA+TGG | + | chr7.4:18380731-18380750 | None:intergenic | 25.0% |
| ! | TTACCATAATAATATAGTGG+GGG | + | chr7.4:18380391-18380410 | None:intergenic | 25.0% |
| ! | TTTCATTTATAAGAAACGGA+TGG | - | chr7.4:18380846-18380865 | MS.gene39120:intron | 25.0% |
| !! | CATGAAAGAGTAAACAATTT+TGG | + | chr7.4:18381201-18381220 | None:intergenic | 25.0% |
| !! | CCTTCCAATTTTCTATAAAT+TGG | - | chr7.4:18378791-18378810 | MS.gene39120:intron | 25.0% |
| !! | GTAACCTACTTTAAGAAAAA+AGG | - | chr7.4:18379339-18379358 | MS.gene39120:intron | 25.0% |
| !!! | ACTTCTAATCCATGTTTTTA+AGG | - | chr7.4:18380719-18380738 | MS.gene39120:intron | 25.0% |
| !!! | AGTACATATTTTAATAGCAC+GGG | - | chr7.4:18380331-18380350 | MS.gene39120:CDS | 25.0% |
| !!! | AGTTGGAGTTTTTTTTTTAC+TGG | - | chr7.4:18380454-18380473 | MS.gene39120:intron | 25.0% |
| !!! | ATTTATTTTGCAATGTTTGC+AGG | - | chr7.4:18380146-18380165 | MS.gene39120:CDS | 25.0% |
| !!! | GTTCTCTTTTTGACTAATTA+AGG | + | chr7.4:18378555-18378574 | None:intergenic | 25.0% |
| !!! | TTCATTTAATTTGCTAGGTT+AGG | + | chr7.4:18380525-18380544 | None:intergenic | 25.0% |
| !!! | TTTAGCTTTATATAACTCCA+TGG | - | chr7.4:18378902-18378921 | MS.gene39120:intron | 25.0% |
| AAATAATCATTTGGGCACTA+TGG | - | chr7.4:18380239-18380258 | MS.gene39120:CDS | 30.0% | |
| ACAAAAGCAGAATTGTAACT+TGG | + | chr7.4:18379743-18379762 | None:intergenic | 30.0% | |
| ACAATATGTTTCTTAACCCT+AGG | - | chr7.4:18381227-18381246 | MS.gene39120:intron | 30.0% | |
| AGATGTTTATCTCATTAGTC+AGG | + | chr7.4:18381450-18381469 | None:intergenic | 30.0% | |
| AGGATCCTTAAGAAACTTAA+AGG | + | chr7.4:18381383-18381402 | None:intergenic | 30.0% | |
| GATGTTTATCTCATTAGTCA+GGG | + | chr7.4:18381449-18381468 | None:intergenic | 30.0% | |
| GCCCTAATTGTTTACTATTA+AGG | - | chr7.4:18380065-18380084 | MS.gene39120:intron | 30.0% | |
| GGAACAAAAAGAGAAGATTA+TGG | + | chr7.4:18381301-18381320 | None:intergenic | 30.0% | |
| GTTGCTTAGACTATTTAGTT+TGG | + | chr7.4:18381101-18381120 | None:intergenic | 30.0% | |
| TGCATGGATATTGTATTAGT+TGG | - | chr7.4:18380437-18380456 | MS.gene39120:intron | 30.0% | |
| TTAAGAAACTTAAAGGCTGA+TGG | + | chr7.4:18381376-18381395 | None:intergenic | 30.0% | |
| TTATTATGAAGAGAAGCCAA+AGG | - | chr7.4:18380573-18380592 | MS.gene39120:intron | 30.0% | |
| TTCTCATATCATCTGACATT+TGG | - | chr7.4:18380679-18380698 | MS.gene39120:intron | 30.0% | |
| ! | AGTCAGGGTATTAATAAAAG+AGG | + | chr7.4:18381434-18381453 | None:intergenic | 30.0% |
| ! | ATCAGCCTTTAAGTTTCTTA+AGG | - | chr7.4:18381375-18381394 | MS.gene39120:CDS | 30.0% |
| ! | CTGTTTGTTTCGTAATGTTT+TGG | - | chr7.4:18379394-18379413 | MS.gene39120:intron | 30.0% |
| ! | GTCAGGGTATTAATAAAAGA+GGG | + | chr7.4:18381433-18381452 | None:intergenic | 30.0% |
| ! | TACCATAATAATATAGTGGG+GGG | + | chr7.4:18380390-18380409 | None:intergenic | 30.0% |
| ! | TCAGGGTATTAATAAAAGAG+GGG | + | chr7.4:18381432-18381451 | None:intergenic | 30.0% |
| !! | CTTCTATAACTTGCATTTTC+AGG | - | chr7.4:18379919-18379938 | MS.gene39120:intron | 30.0% |
| !! | TCTTCTTCTTCTAAAACCTT+TGG | - | chr7.4:18379887-18379906 | MS.gene39120:intron | 30.0% |
| !!! | AATGTTTTGGAACTATGTCA+CGG | - | chr7.4:18379407-18379426 | MS.gene39120:intron | 30.0% |
| !!! | ACACCCTTTTTTCTTAAAGT+AGG | + | chr7.4:18379346-18379365 | None:intergenic | 30.0% |
| !!! | AGAGTTTTTTTAAGAGTGCA+TGG | - | chr7.4:18380483-18380502 | MS.gene39120:intron | 30.0% |
| !!! | TTTTTTCTGCAACATCAACA+TGG | + | chr7.4:18379567-18379586 | None:intergenic | 30.0% |
| AAGACACGTGAAATTGTTAC+CGG | + | chr7.4:18379599-18379618 | None:intergenic | 35.0% | |
| ACGTGTCTTAAAGTACATAC+CGG | - | chr7.4:18379610-18379629 | MS.gene39120:intron | 35.0% | |
| AGGAACATGTTGAGATTGAA+AGG | - | chr7.4:18378627-18378646 | MS.gene39120:intron | 35.0% | |
| ATTTGGCCTCACAAAATAGT+GGG | - | chr7.4:18380696-18380715 | MS.gene39120:intron | 35.0% | |
| CAAGAAGATAAAGAGTGAAG+AGG | - | chr7.4:18381165-18381184 | MS.gene39120:intron | 35.0% | |
| CAGTTAACAAAGAATCGCAA+AGG | - | chr7.4:18379708-18379727 | MS.gene39120:intron | 35.0% | |
| CCAATGATAGATTAATCCAG+AGG | + | chr7.4:18379085-18379104 | None:intergenic | 35.0% | |
| CCTCTGGATTAATCTATCAT+TGG | - | chr7.4:18379082-18379101 | MS.gene39120:intron | 35.0% | |
| CTAGAGATAAGCATACTCAT+AGG | + | chr7.4:18378953-18378972 | None:intergenic | 35.0% | |
| CTATGAGTATGCTTATCTCT+AGG | - | chr7.4:18378951-18378970 | MS.gene39120:intron | 35.0% | |
| GATTTACAAAAGCAAGTGCA+AGG | - | chr7.4:18379632-18379651 | MS.gene39120:intron | 35.0% | |
| GCAGAAAAAAATGAGCATTC+CGG | - | chr7.4:18379577-18379596 | MS.gene39120:intron | 35.0% | |
| GCTTTATATAACTCCATGGT+TGG | - | chr7.4:18378906-18378925 | MS.gene39120:intron | 35.0% | |
| GGTTAATTAGAAGCTTGGAA+AGG | - | chr7.4:18380352-18380371 | MS.gene39120:CDS | 35.0% | |
| TAATAGAGCTAGTAGGAAGA+AGG | - | chr7.4:18380414-18380433 | MS.gene39120:CDS | 35.0% | |
| TACCTGACTCTTCATAGATT+AGG | + | chr7.4:18380890-18380909 | None:intergenic | 35.0% | |
| TATTACCGTTTGATCTTCAC+CGG | + | chr7.4:18378759-18378778 | None:intergenic | 35.0% | |
| TCAATCTCAACATGTTCCTT+TGG | + | chr7.4:18378626-18378645 | None:intergenic | 35.0% | |
| TCATCAATTCTCTTCACCAA+AGG | - | chr7.4:18378607-18378626 | MS.gene39120:intron | 35.0% | |
| ! | CTTTTGTAGTTTCGACAAGT+AGG | - | chr7.4:18379756-18379775 | MS.gene39120:intron | 35.0% |
| ! | GGTGAAGAGAATTGATGATA+CGG | + | chr7.4:18378605-18378624 | None:intergenic | 35.0% |
| ! | TATTTTGCAATGTTTGCAGG+TGG | - | chr7.4:18380149-18380168 | MS.gene39120:CDS | 35.0% |
| !! | CTTCTTCTAAAACCTTTGGA+GGG | - | chr7.4:18379891-18379910 | MS.gene39120:intron | 35.0% |
| !! | TCTTCTTCTAAAACCTTTGG+AGG | - | chr7.4:18379890-18379909 | MS.gene39120:intron | 35.0% |
| !! | TGCACTTGCTTTTGTAAATC+CGG | + | chr7.4:18379632-18379651 | None:intergenic | 35.0% |
| !!! | GTGTTGATGGTTTTTTGTTG+AGG | + | chr7.4:18381254-18381273 | None:intergenic | 35.0% |
| AACCAAACGACTCTATCCTT+TGG | + | chr7.4:18380592-18380611 | None:intergenic | 40.0% | |
| AAGAGCAAGAGACTAGAAGA+GGG | + | chr7.4:18381322-18381341 | None:intergenic | 40.0% | |
| AGCATTGTGGTTAAGCTTCT+TGG | + | chr7.4:18378675-18378694 | None:intergenic | 40.0% | |
| AGCCTAATCTATGAAGAGTC+AGG | - | chr7.4:18380885-18380904 | MS.gene39120:intron | 40.0% | |
| AGCTTCTTGGCCATAAGTTT+AGG | + | chr7.4:18378662-18378681 | None:intergenic | 40.0% | |
| ATTACCGTTTGATCTTCACC+GGG | + | chr7.4:18378758-18378777 | None:intergenic | 40.0% | |
| ATTGGACCAGAGACTATTCT+TGG | - | chr7.4:18379100-18379119 | MS.gene39120:intron | 40.0% | |
| ATTTGACATGAGACGAAGGA+AGG | + | chr7.4:18380984-18381003 | None:intergenic | 40.0% | |
| CACATCAAGATCTCAGATAG+AGG | + | chr7.4:18379836-18379855 | None:intergenic | 40.0% | |
| CATTTGGCCTCACAAAATAG+TGG | - | chr7.4:18380695-18380714 | MS.gene39120:intron | 40.0% | |
| CTCAGATAGAGGAATCTTGT+AGG | + | chr7.4:18379825-18379844 | None:intergenic | 40.0% | |
| CTTCTTGGCCATAAGTTTAG+GGG | + | chr7.4:18378660-18378679 | None:intergenic | 40.0% | |
| GAAACTTAAAGGCTGATGGT+TGG | + | chr7.4:18381372-18381391 | None:intergenic | 40.0% | |
| GCTTCTTGGCCATAAGTTTA+GGG | + | chr7.4:18378661-18378680 | None:intergenic | 40.0% | |
| GTTGATCCAAGAATAGTCTC+TGG | + | chr7.4:18379109-18379128 | None:intergenic | 40.0% | |
| TGCCCCCCACTATATTATTA+TGG | - | chr7.4:18380385-18380404 | MS.gene39120:CDS | 40.0% | |
| TTTCATCATCAGACCAACCA+TGG | + | chr7.4:18378922-18378941 | None:intergenic | 40.0% | |
| ! | AGAAGTCCCACTATTTTGTG+AGG | + | chr7.4:18380705-18380724 | None:intergenic | 40.0% |
| !! | AGTGCTTGCTTTTGTGTTGA+TGG | + | chr7.4:18381267-18381286 | None:intergenic | 40.0% |
| !!! | GGTTTTTTGTTGAGGACCTA+GGG | + | chr7.4:18381246-18381265 | None:intergenic | 40.0% |
| !!! | TGGTTTTTTGTTGAGGACCT+AGG | + | chr7.4:18381247-18381266 | None:intergenic | 40.0% |
| ACACCAAGACCATACATGTG+CGG | - | chr7.4:18381055-18381074 | MS.gene39120:intron | 45.0% | |
| AGCCAAAGGATAGAGTCGTT+TGG | - | chr7.4:18380587-18380606 | MS.gene39120:intron | 45.0% | |
| CAAGAGCAAGAGACTAGAAG+AGG | + | chr7.4:18381323-18381342 | None:intergenic | 45.0% | |
| CGACATTTGACATGAGACGA+AGG | + | chr7.4:18380988-18381007 | None:intergenic | 45.0% | |
| GATCACGTTCACTAGCATTG+TGG | + | chr7.4:18378688-18378707 | None:intergenic | 45.0% | |
| GTGCTCACGATTTCTGTGTT+TGG | - | chr7.4:18378995-18379014 | MS.gene39120:intron | 45.0% | |
| TCACTTCGTTCACTTCTTCC+CGG | - | chr7.4:18378737-18378756 | MS.gene39120:intron | 45.0% | |
| TCTTCCCGGTGAAGATCAAA+CGG | - | chr7.4:18378751-18378770 | MS.gene39120:intron | 45.0% | |
| TTGGCCATAAGTTTAGGGGA+TGG | + | chr7.4:18378656-18378675 | None:intergenic | 45.0% | |
| TTGTTTGTCCCGCACATGTA+TGG | + | chr7.4:18381067-18381086 | None:intergenic | 45.0% | |
| ! | GCACGGGTTAATTAGAAGCT+TGG | - | chr7.4:18380347-18380366 | MS.gene39120:CDS | 45.0% |
| !! | CTGATGGTTGGTGTCTTTTG+GGG | + | chr7.4:18381360-18381379 | None:intergenic | 45.0% |
| !! | CTTCTAAAACCTTTGGAGGG+AGG | - | chr7.4:18379894-18379913 | MS.gene39120:intron | 45.0% |
| !! | GCTGATGGTTGGTGTCTTTT+GGG | + | chr7.4:18381361-18381380 | None:intergenic | 45.0% |
| !! | TGATGGTTGGTGTCTTTTGG+GGG | + | chr7.4:18381359-18381378 | None:intergenic | 45.0% |
| !! | TGTCTTTTGGGGGAATGACT+GGG | + | chr7.4:18381349-18381368 | None:intergenic | 45.0% |
| ATAGAAGAGCCTCCCTCCAA+AGG | + | chr7.4:18379906-18379925 | None:intergenic | 50.0% | |
| CACCAAGACCATACATGTGC+GGG | - | chr7.4:18381056-18381075 | MS.gene39120:intron | 50.0% | |
| GCCACCATCCCCTAAACTTA+TGG | - | chr7.4:18378649-18378668 | MS.gene39120:intron | 50.0% | |
| GCCATAAGTTTAGGGGATGG+TGG | + | chr7.4:18378653-18378672 | None:intergenic | 50.0% | |
| ! | GCTAGTAGGAAGAAGGTGCA+TGG | - | chr7.4:18380421-18380440 | MS.gene39120:CDS | 50.0% |
| !! | GGCTGATGGTTGGTGTCTTT+TGG | + | chr7.4:18381362-18381381 | None:intergenic | 50.0% |
| !! | GTCTTTTGGGGGAATGACTG+GGG | + | chr7.4:18381348-18381367 | None:intergenic | 50.0% |
| !! | GTGTCTTTTGGGGGAATGAC+TGG | + | chr7.4:18381350-18381369 | None:intergenic | 50.0% |
| GGGATGGCTCTTAGAGGAGT+TGG | - | chr7.4:18378520-18378539 | MS.gene39120:CDS | 55.0% | |
| GTCCCGCACATGTATGGTCT+TGG | + | chr7.4:18381061-18381080 | None:intergenic | 55.0% | |
| TTTATTGGACCCCGCTCGAG+TGG | - | chr7.4:18379045-18379064 | MS.gene39120:intron | 55.0% | |
| AACCCCACCATCCACTCGAG+CGG | + | chr7.4:18379059-18379078 | None:intergenic | 60.0% | |
| ACCCCACCATCCACTCGAGC+GGG | + | chr7.4:18379058-18379077 | None:intergenic | 65.0% | |
| ACCCCGCTCGAGTGGATGGT+GGG | - | chr7.4:18379053-18379072 | MS.gene39120:intron | 65.0% | |
| TTGGACCCCGCTCGAGTGGA+TGG | - | chr7.4:18379049-18379068 | MS.gene39120:intron | 65.0% | |
| !! | GCTCGAGTGGATGGTGGGGT+TGG | - | chr7.4:18379058-18379077 | MS.gene39120:intron | 65.0% |
| !! | GGATGGTGGGGTTGGTCCTC+TGG | - | chr7.4:18379066-18379085 | MS.gene39120:intron | 65.0% |
| CCCCACCATCCACTCGAGCG+GGG | + | chr7.4:18379057-18379076 | None:intergenic | 70.0% | |
| CCCCGCTCGAGTGGATGGTG+GGG | - | chr7.4:18379054-18379073 | MS.gene39120:intron | 70.0% | |
| GACCCCGCTCGAGTGGATGG+TGG | - | chr7.4:18379052-18379071 | MS.gene39120:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 18378518 | 18381518 | 18378518 | ID=MS.gene39120 |
| chr7.4 | mRNA | 18378518 | 18381518 | 18378518 | ID=MS.gene39120.t1;Parent=MS.gene39120 |
| chr7.4 | exon | 18381264 | 18381518 | 18381264 | ID=MS.gene39120.t1.exon1;Parent=MS.gene39120.t1 |
| chr7.4 | CDS | 18381264 | 18381518 | 18381264 | ID=cds.MS.gene39120.t1;Parent=MS.gene39120.t1 |
| chr7.4 | exon | 18380096 | 18380455 | 18380096 | ID=MS.gene39120.t1.exon2;Parent=MS.gene39120.t1 |
| chr7.4 | CDS | 18380096 | 18380455 | 18380096 | ID=cds.MS.gene39120.t1;Parent=MS.gene39120.t1 |
| chr7.4 | exon | 18378518 | 18378556 | 18378518 | ID=MS.gene39120.t1.exon3;Parent=MS.gene39120.t1 |
| chr7.4 | CDS | 18378518 | 18378556 | 18378518 | ID=cds.MS.gene39120.t1;Parent=MS.gene39120.t1 |
| Gene Sequence |
| Protein sequence |
