Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39192.t1 | XP_024638206.1 | 89.8 | 314 | 25 | 1 | 1 | 307 | 1 | 314 | 2.20E-156 | 561.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39192.t1 | Q9FG08 | 58.9 | 285 | 111 | 1 | 29 | 307 | 41 | 325 | 5.7e-92 | 339.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39192.t1 | A0A396JSM6 | 89.8 | 314 | 25 | 1 | 1 | 307 | 1 | 314 | 1.6e-156 | 561.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene39192.t1 | TR | SET |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39192.t1 | MTR_1g054665 | 94.203 | 276 | 9 | 1 | 1 | 269 | 1 | 276 | 0.0 | 531 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39192.t1 | AT5G06620 | 58.947 | 285 | 111 | 1 | 29 | 307 | 41 | 325 | 1.75e-119 | 346 |
| MS.gene39192.t1 | AT5G06620 | 49.068 | 161 | 76 | 1 | 29 | 183 | 41 | 201 | 4.57e-48 | 161 |
Find 89 sgRNAs with CRISPR-Local
Find 386 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGTTTAAAATTTCCCTTTC+TGG | 0.196796 | 1.2:-42230313 | MS.gene39192:CDS |
| ATCCCAATGCACACATTATA+TGG | 0.261658 | 1.2:-42229094 | MS.gene39192:CDS |
| GGAGGAGAGGTTAGGGAGTC+TGG | 0.295713 | 1.2:+42232939 | None:intergenic |
| GAACTATTGTTTCAAGGTTT+CGG | 0.298888 | 1.2:-42227327 | MS.gene39192:CDS |
| AATCATCTCATGTGTCAAAT+TGG | 0.302224 | 1.2:+42230221 | None:intergenic |
| AACACTGATGTACCATTGTT+TGG | 0.332721 | 1.2:+42229477 | None:intergenic |
| CGCATTGAGTTGGCTGGTGG+TGG | 0.357752 | 1.2:-42229427 | MS.gene39192:CDS |
| ATATGAAGATCTTCTTTCTT+CGG | 0.376816 | 1.2:-42229401 | MS.gene39192:CDS |
| CTGCTATATTGATGCCAGTC+TGG | 0.385411 | 1.2:-42227367 | MS.gene39192:CDS |
| CGCGACCCACTGTGTCTGTA+AGG | 0.392626 | 1.2:+42233073 | None:intergenic |
| AGCATTTCCAACAGCAGCTT+CGG | 0.399684 | 1.2:+42229360 | None:intergenic |
| ACAATGGTACATCAGTGTTT+TGG | 0.402161 | 1.2:-42229473 | MS.gene39192:CDS |
| AGGGTGGCAGACGGCAGGTT+CGG | 0.414122 | 1.2:+42233002 | None:intergenic |
| TTGGCTTGCATGATCATATC+AGG | 0.415237 | 1.2:-42230282 | MS.gene39192:CDS |
| TATGTCAAGACTATCACTTC+TGG | 0.421083 | 1.2:+42230254 | None:intergenic |
| CGGAGAGAACTATTGTTTCA+AGG | 0.423978 | 1.2:-42227333 | MS.gene39192:CDS |
| GATTGGGCGAGTTGCGAATA+CGG | 0.425173 | 1.2:+42233050 | None:intergenic |
| ATCCATATAATGTGTGCATT+GGG | 0.443622 | 1.2:+42229092 | None:intergenic |
| ACCACAGTCATGATTATAGA+AGG | 0.444164 | 1.2:+42229321 | None:intergenic |
| CCGAGCACCGCGGTCCAGAC+TGG | 0.447445 | 1.2:+42227353 | None:intergenic |
| TGAGATCTCCAGTAGGGATT+GGG | 0.448585 | 1.2:+42233034 | None:intergenic |
| GTAAGGGAGACTTGGATGGG+AGG | 0.448929 | 1.2:+42233090 | None:intergenic |
| GCGGCAACGGTGAGAACAAA+AGG | 0.450722 | 1.2:+42232915 | None:intergenic |
| TCCCTTTCTGGTAAAGCGGT+TGG | 0.454495 | 1.2:-42230301 | MS.gene39192:CDS |
| GCAACTCGCCCAATCCCTAC+TGG | 0.457749 | 1.2:-42233042 | MS.gene39192:CDS |
| TATCCATATAATGTGTGCAT+TGG | 0.459802 | 1.2:+42229091 | None:intergenic |
| CAAGAGTAACAGACGGGGTG+GGG | 0.468116 | 1.2:+42232967 | None:intergenic |
| CCAGTCTGGACCGCGGTGCT+CGG | 0.475028 | 1.2:-42227353 | MS.gene39192:CDS |
| ATCTCATGTGTCAAATTGGC+AGG | 0.475849 | 1.2:+42230225 | None:intergenic |
| GTAACAGACGGGGTGGGGAG+CGG | 0.477249 | 1.2:+42232972 | None:intergenic |
| TAATGCAGTGGCAAAATTGA+AGG | 0.480874 | 1.2:-42229066 | MS.gene39192:CDS |
| GGGTGGGGAGCGGAAGGTGA+AGG | 0.481274 | 1.2:+42232982 | None:intergenic |
| CAATGCATTTCGCATTGAGT+TGG | 0.481923 | 1.2:-42229437 | MS.gene39192:CDS |
| GGTGAAGGGTGGCAGACGGC+AGG | 0.483322 | 1.2:+42232997 | None:intergenic |
| ATGAGATCTCCAGTAGGGAT+TGG | 0.484556 | 1.2:+42233033 | None:intergenic |
| AGGGAGACTTGGATGGGAGG+GGG | 0.484775 | 1.2:+42233093 | None:intergenic |
| ATGTTGAGATGAAAGCAAAT+TGG | 0.485216 | 1.2:-42231476 | MS.gene39192:CDS |
| AAGGGAGACTTGGATGGGAG+GGG | 0.485224 | 1.2:+42233092 | None:intergenic |
| GCCAACCGCTTTACCAGAAA+GGG | 0.492202 | 1.2:+42230300 | None:intergenic |
| CCGTTGCCGCACTCTTACCC+TGG | 0.497791 | 1.2:-42232902 | MS.gene39192:intron |
| GGGGAGCGGAAGGTGAAGGG+TGG | 0.498761 | 1.2:+42232986 | None:intergenic |
| AGCCAACCGCTTTACCAGAA+AGG | 0.512299 | 1.2:+42230299 | None:intergenic |
| GCCCTCCGTGACATTGATGA+AGG | 0.515818 | 1.2:-42229044 | MS.gene39192:intron |
| CTGTGTCTGTAAGGGAGACT+TGG | 0.516340 | 1.2:+42233082 | None:intergenic |
| CAGACGGGGTGGGGAGCGGA+AGG | 0.517375 | 1.2:+42232976 | None:intergenic |
| GTCTGTAAGGGAGACTTGGA+TGG | 0.522858 | 1.2:+42233086 | None:intergenic |
| CGGCAACGGTGAGAACAAAA+GGG | 0.524300 | 1.2:+42232916 | None:intergenic |
| GCATTTCGCATTGAGTTGGC+TGG | 0.527315 | 1.2:-42229433 | MS.gene39192:CDS |
| GCAAGAGTAACAGACGGGGT+GGG | 0.527595 | 1.2:+42232966 | None:intergenic |
| CCAGGGTAAGAGTGCGGCAA+CGG | 0.529926 | 1.2:+42232902 | None:intergenic |
| TGCAATAAGTGCCTTTGTGA+AGG | 0.535808 | 1.2:+42229628 | None:intergenic |
| GTAGAAGCCGAAGCTGCTGT+TGG | 0.536645 | 1.2:-42229367 | MS.gene39192:CDS |
| GGTGGGGAGCGGAAGGTGAA+GGG | 0.543915 | 1.2:+42232983 | None:intergenic |
| GTGGCAGACGGCAGGTTCGG+CGG | 0.549867 | 1.2:+42233005 | None:intergenic |
| GCGAGGCAAGAGTAACAGAC+GGG | 0.569516 | 1.2:+42232961 | None:intergenic |
| TAAGGGAGACTTGGATGGGA+GGG | 0.581061 | 1.2:+42233091 | None:intergenic |
| AAGAGGGGTTCAACTTGCTA+AGG | 0.581272 | 1.2:-42229655 | MS.gene39192:CDS |
| GCATTGAGTTGGCTGGTGGT+GGG | 0.583871 | 1.2:-42229426 | MS.gene39192:CDS |
| GCGACCCACTGTGTCTGTAA+GGG | 0.587365 | 1.2:+42233074 | None:intergenic |
| AATTTCCCTTTCTGGTAAAG+CGG | 0.590443 | 1.2:-42230305 | MS.gene39192:CDS |
| TGAGATGAAAGCAAATTGGA+TGG | 0.592174 | 1.2:-42231472 | MS.gene39192:CDS |
| AGACGGCAGGTTCGGCGGTG+TGG | 0.595161 | 1.2:+42233010 | None:intergenic |
| GGCAAGAGTAACAGACGGGG+TGG | 0.597153 | 1.2:+42232965 | None:intergenic |
| GGAAGGTGAAGGGTGGCAGA+CGG | 0.600047 | 1.2:+42232993 | None:intergenic |
| CAGTCATGATTATAGAAGGA+AGG | 0.603362 | 1.2:+42229325 | None:intergenic |
| GGCAACGGTGAGAACAAAAG+GGG | 0.605661 | 1.2:+42232917 | None:intergenic |
| ACCTTCATCAATGTCACGGA+GGG | 0.613577 | 1.2:+42229043 | None:intergenic |
| AATTGTAGCAGGTGCTTGCA+TGG | 0.613839 | 1.2:-42227294 | MS.gene39192:CDS |
| TCTGTAAGGGAGACTTGGAT+GGG | 0.618328 | 1.2:+42233087 | None:intergenic |
| AGAGGTTAGGGAGTCTGGCG+AGG | 0.619654 | 1.2:+42232944 | None:intergenic |
| GAGAATGTGAAGAGGTGAAG+TGG | 0.623747 | 1.2:+42233126 | None:intergenic |
| GGCGAGGCAAGAGTAACAGA+CGG | 0.631575 | 1.2:+42232960 | None:intergenic |
| GTCTCCCTTACAGACACAGT+GGG | 0.636656 | 1.2:-42233078 | MS.gene39192:CDS |
| TGTGGATGAGATCTCCAGTA+GGG | 0.636861 | 1.2:+42233028 | None:intergenic |
| TTTCGCATTGAGTTGGCTGG+TGG | 0.638184 | 1.2:-42229430 | MS.gene39192:CDS |
| ACAAACCTTCATCAATGTCA+CGG | 0.645369 | 1.2:+42229039 | None:intergenic |
| GTGTGGATGAGATCTCCAGT+AGG | 0.645659 | 1.2:+42233027 | None:intergenic |
| TCCTTCTATAATCATGACTG+TGG | 0.674418 | 1.2:-42229322 | MS.gene39192:intron |
| GCTAAGGAATGCCTTCACAA+AGG | 0.678500 | 1.2:-42229639 | MS.gene39192:CDS |
| AACGCACCAGGGTAAGAGTG+CGG | 0.686875 | 1.2:+42232896 | None:intergenic |
| TATATGGATAGATAATGCAG+TGG | 0.693112 | 1.2:-42229078 | MS.gene39192:CDS |
| ATTGATGCCAGTCTGGACCG+CGG | 0.695506 | 1.2:-42227360 | MS.gene39192:CDS |
| TGAAACGTGAAGAAGCTAAG+CGG | 0.711309 | 1.2:+42233154 | None:intergenic |
| GCAACGGTGAGAACAAAAGG+GGG | 0.716047 | 1.2:+42232918 | None:intergenic |
| CGAGGCAAGAGTAACAGACG+GGG | 0.716735 | 1.2:+42232962 | None:intergenic |
| AACCTTCATCAATGTCACGG+AGG | 0.721186 | 1.2:+42229042 | None:intergenic |
| TCTGGGTTGAGAATGTGAAG+AGG | 0.733487 | 1.2:+42233118 | None:intergenic |
| AGTCTCCCTTACAGACACAG+TGG | 0.739651 | 1.2:-42233079 | MS.gene39192:CDS |
| ATAGTTCTCTCCGAGCACCG+CGG | 0.792831 | 1.2:+42227343 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATACTGTTAAAAAAAAAA+GGG | + | chr1.2:42227606-42227625 | None:intergenic | 10.0% |
| !!! | TGTTTTTTTCTTTAATTAAT+TGG | - | chr1.2:42228060-42228079 | MS.gene39192:intron | 10.0% |
| !!! | TTTTAAAATTCTTTTAACAA+CGG | + | chr1.2:42228221-42228240 | None:intergenic | 10.0% |
| !! | ATTAGATATCATAAGAATTT+AGG | + | chr1.2:42232465-42232484 | None:intergenic | 15.0% |
| !! | CAATAAAACTATTAAGAAAA+AGG | + | chr1.2:42231774-42231793 | None:intergenic | 15.0% |
| !! | CTTATACTGTTAAAAAAAAA+AGG | + | chr1.2:42227607-42227626 | None:intergenic | 15.0% |
| !! | TTTATTAAAAACACTAACAA+GGG | + | chr1.2:42229382-42229401 | None:intergenic | 15.0% |
| !!! | AATTTATTGACTAAATTTGT+TGG | + | chr1.2:42227895-42227914 | None:intergenic | 15.0% |
| !!! | ATTAAGAAAAAGGTTTTAAA+AGG | + | chr1.2:42231764-42231783 | None:intergenic | 15.0% |
| !!! | TTGAAGTTTGATTAAAATTT+TGG | - | chr1.2:42230732-42230751 | MS.gene39192:intron | 15.0% |
| !!! | TTTTATTAAAAACACTAACA+AGG | + | chr1.2:42229383-42229402 | None:intergenic | 15.0% |
| !! | AATAACAAAAAAAGAGTAGT+AGG | - | chr1.2:42228539-42228558 | MS.gene39192:intron | 20.0% |
| !! | AGAAAACATACATTAATTGA+AGG | + | chr1.2:42230433-42230452 | None:intergenic | 20.0% |
| !! | AGCATAACAATATAGAAAAA+GGG | + | chr1.2:42227676-42227695 | None:intergenic | 20.0% |
| !! | ATAAAACGTAGAACTTAATT+AGG | - | chr1.2:42232867-42232886 | MS.gene39192:intron | 20.0% |
| !! | ATATATAGCCCTAAAAAAAA+GGG | - | chr1.2:42229843-42229862 | MS.gene39192:intron | 20.0% |
| !! | ATGATTGATGTTATAAAAGA+TGG | + | chr1.2:42231718-42231737 | None:intergenic | 20.0% |
| !! | GAAAACATACATTAATTGAA+GGG | + | chr1.2:42230432-42230451 | None:intergenic | 20.0% |
| !! | GAATAACAACATTCTATAAT+TGG | + | chr1.2:42232734-42232753 | None:intergenic | 20.0% |
| !! | GATATCATAATTAAACAATG+TGG | + | chr1.2:42228755-42228774 | None:intergenic | 20.0% |
| !! | GTTTCAGTAATTTATCATTA+GGG | + | chr1.2:42230025-42230044 | None:intergenic | 20.0% |
| !! | TAACTCATTAATCAAACAAA+TGG | - | chr1.2:42232630-42232649 | MS.gene39192:intron | 20.0% |
| !! | TAGCATAACAATATAGAAAA+AGG | + | chr1.2:42227677-42227696 | None:intergenic | 20.0% |
| !! | TATATATAGCCCTAAAAAAA+AGG | - | chr1.2:42229842-42229861 | MS.gene39192:intron | 20.0% |
| !! | TGATTGATGTTATAAAAGAT+GGG | + | chr1.2:42231717-42231736 | None:intergenic | 20.0% |
| !! | TGTTTCAGTAATTTATCATT+AGG | + | chr1.2:42230026-42230045 | None:intergenic | 20.0% |
| !! | TTCAATTTGAACATCAATAA+TGG | + | chr1.2:42230717-42230736 | None:intergenic | 20.0% |
| !!! | AATGTATTTCGTCTTAATTT+TGG | + | chr1.2:42228004-42228023 | None:intergenic | 20.0% |
| !!! | ATGTATTTCGTCTTAATTTT+GGG | + | chr1.2:42228003-42228022 | None:intergenic | 20.0% |
| !!! | ATTTTATTACTTAGAGTACA+AGG | + | chr1.2:42229772-42229791 | None:intergenic | 20.0% |
| !!! | ATTTTTTGGTTCAAGAATTA+TGG | + | chr1.2:42229202-42229221 | None:intergenic | 20.0% |
| !!! | CTTTTGCTTATATTTAAAAC+CGG | - | chr1.2:42228029-42228048 | MS.gene39192:intron | 20.0% |
| !!! | CTTTTGCTTATATTTAAAAC+CGG | + | chr1.2:42228048-42228029 | None:intergenic | 20.0% |
| !!! | TCTTTTATAACATCAATCAT+TGG | - | chr1.2:42231718-42231737 | MS.gene39192:intron | 20.0% |
| !!! | TGGGATTTTGATATATTTAT+AGG | - | chr1.2:42228956-42228975 | MS.gene39192:intron | 20.0% |
| !!! | TTGTTGATAAAACATGATAT+AGG | + | chr1.2:42231607-42231626 | None:intergenic | 20.0% |
| !!! | TTTAAGTTTTAACCAAACAA+TGG | - | chr1.2:42230975-42230994 | MS.gene39192:intron | 20.0% |
| !!! | TTTTAACAGTATAAGATGAA+CGG | - | chr1.2:42227612-42227631 | MS.gene39192:intron | 20.0% |
| !!! | TTTTATTACTTAGAGTACAA+GGG | + | chr1.2:42229771-42229790 | None:intergenic | 20.0% |
| !!! | TTTTCACTTATAATCAATAC+TGG | - | chr1.2:42230564-42230583 | MS.gene39192:intron | 20.0% |
| !!! | TTTTTCCCTTTTAATTTTGT+AGG | - | chr1.2:42231476-42231495 | MS.gene39192:CDS | 20.0% |
| ! | AAAACAGAAAAGTGAACTTA+GGG | + | chr1.2:42229253-42229272 | None:intergenic | 25.0% |
| ! | AAAACATGATATAGGCAAAA+AGG | + | chr1.2:42231599-42231618 | None:intergenic | 25.0% |
| ! | AAACAACACTTTATTCACTT+TGG | - | chr1.2:42229474-42229493 | MS.gene39192:CDS | 25.0% |
| ! | AAATACTACATGATAAGCTA+AGG | + | chr1.2:42230073-42230092 | None:intergenic | 25.0% |
| ! | AACAAAATGTTCCTAAAAGA+AGG | + | chr1.2:42230882-42230901 | None:intergenic | 25.0% |
| ! | AAGAAAGAAAACAAGACATT+GGG | + | chr1.2:42232284-42232303 | None:intergenic | 25.0% |
| ! | AAGTAGCTTAATATGTTCTA+CGG | - | chr1.2:42229175-42229194 | MS.gene39192:intron | 25.0% |
| ! | AATTTCTATTCTCTGATCAA+TGG | - | chr1.2:42228187-42228206 | MS.gene39192:intron | 25.0% |
| ! | ATACATGCAAAATGTAATGT+AGG | - | chr1.2:42228882-42228901 | MS.gene39192:intron | 25.0% |
| ! | ATAGTCCATATAAATACCAA+TGG | - | chr1.2:42227785-42227804 | MS.gene39192:intron | 25.0% |
| ! | ATATGAAGATCTTCTTTCTT+CGG | - | chr1.2:42231063-42231082 | MS.gene39192:intron | 25.0% |
| ! | ATTATTATGCATCCTATGAT+AGG | - | chr1.2:42229978-42229997 | MS.gene39192:intron | 25.0% |
| ! | CTATTATTGATCGACAATTA+TGG | - | chr1.2:42232354-42232373 | MS.gene39192:intron | 25.0% |
| ! | GAAATACAATGATTTACAGA+AGG | + | chr1.2:42230680-42230699 | None:intergenic | 25.0% |
| ! | GTAAAGAAAAATTCTCATAC+CGG | + | chr1.2:42229034-42229053 | None:intergenic | 25.0% |
| ! | TAAGAAAGAAAACAAGACAT+TGG | + | chr1.2:42232285-42232304 | None:intergenic | 25.0% |
| ! | TAATTGGATGATTACTACAT+TGG | + | chr1.2:42232718-42232737 | None:intergenic | 25.0% |
| ! | TACATAATTTCTCCTAAACA+TGG | + | chr1.2:42231300-42231319 | None:intergenic | 25.0% |
| ! | TTAAAGATTATTGAAACCCA+CGG | + | chr1.2:42229069-42229088 | None:intergenic | 25.0% |
| ! | TTGGGAATATTAACAATGTA+GGG | - | chr1.2:42227852-42227871 | MS.gene39192:intron | 25.0% |
| ! | TTTAACAGTATAAGATGAAC+GGG | - | chr1.2:42227613-42227632 | MS.gene39192:intron | 25.0% |
| ! | TTTATTACTTAGAGTACAAG+GGG | + | chr1.2:42229770-42229789 | None:intergenic | 25.0% |
| ! | TTTGGGAATATTAACAATGT+AGG | - | chr1.2:42227851-42227870 | MS.gene39192:intron | 25.0% |
| !! | ACGAACAAAGTAATTTTCAA+AGG | - | chr1.2:42229575-42229594 | MS.gene39192:intron | 25.0% |
| !! | CATGTTTTATCAACAAAATC+TGG | - | chr1.2:42231611-42231630 | MS.gene39192:intron | 25.0% |
| !! | GTATTACAGAGTATTAGATA+AGG | - | chr1.2:42232326-42232345 | MS.gene39192:intron | 25.0% |
| !! | TATATTTGTTCTGAATGTCA+AGG | - | chr1.2:42228122-42228141 | MS.gene39192:intron | 25.0% |
| !! | TGCAATTTGAAGAATCTTTT+GGG | - | chr1.2:42227834-42227853 | MS.gene39192:intron | 25.0% |
| !!! | ACTCTTCTGAAATAAAATCA+AGG | + | chr1.2:42232192-42232211 | None:intergenic | 25.0% |
| !!! | AGTTAAATGCTTTGTTTGTT+GGG | - | chr1.2:42229736-42229755 | MS.gene39192:intron | 25.0% |
| !!! | CATTAATTGAAGGGTATTTT+AGG | + | chr1.2:42230423-42230442 | None:intergenic | 25.0% |
| !!! | CTCTTTTTTTGTTATTTCTC+AGG | + | chr1.2:42228535-42228554 | None:intergenic | 25.0% |
| !!! | GTATAACATCATTTTTCAGA+TGG | - | chr1.2:42230786-42230805 | MS.gene39192:intron | 25.0% |
| !!! | TCTCATTTCATCAGTTTTAA+CGG | - | chr1.2:42229127-42229146 | MS.gene39192:intron | 25.0% |
| !!! | TGCAGATATGTACTTATTTT+GGG | - | chr1.2:42228937-42228956 | MS.gene39192:intron | 25.0% |
| !!! | TGGATTTTAATAACTATTGC+CGG | - | chr1.2:42229012-42229031 | MS.gene39192:intron | 25.0% |
| AAACAGAAAAGTGAACTTAG+GGG | + | chr1.2:42229252-42229271 | None:intergenic | 30.0% | |
| AAATCTCTTTGGTAAATTGC+AGG | - | chr1.2:42233059-42233078 | MS.gene39192:CDS | 30.0% | |
| AATATTTGCCTTCCATGTTT+AGG | - | chr1.2:42231285-42231304 | MS.gene39192:intron | 30.0% | |
| AATCATCTCATGTGTCAAAT+TGG | + | chr1.2:42230246-42230265 | None:intergenic | 30.0% | |
| AATGACAATAATCAGTTGAC+AGG | - | chr1.2:42230295-42230314 | MS.gene39192:CDS | 30.0% | |
| AGAAAGAAAACAAGACATTG+GGG | + | chr1.2:42232283-42232302 | None:intergenic | 30.0% | |
| AGCCATCCTACAAAATTAAA+AGG | + | chr1.2:42231485-42231504 | None:intergenic | 30.0% | |
| ATAAACAGGATTGGGAAATT+CGG | - | chr1.2:42229658-42229677 | MS.gene39192:CDS | 30.0% | |
| ATAGAAATTCATCCTAGCTT+TGG | + | chr1.2:42228176-42228195 | None:intergenic | 30.0% | |
| ATAGGATGCATAATAATCTC+TGG | + | chr1.2:42229975-42229994 | None:intergenic | 30.0% | |
| ATATTGTTAATCGCAGATAG+TGG | - | chr1.2:42228565-42228584 | MS.gene39192:intron | 30.0% | |
| ATCATGCTATCATATGATCT+TGG | - | chr1.2:42228433-42228452 | MS.gene39192:intron | 30.0% | |
| ATCCATATAATGTGTGCATT+GGG | + | chr1.2:42231375-42231394 | None:intergenic | 30.0% | |
| ATGAGTTTGCAGAAAAGAAA+TGG | - | chr1.2:42228292-42228311 | MS.gene39192:intron | 30.0% | |
| ATGTTGAGATGAAAGCAAAT+TGG | - | chr1.2:42228988-42229007 | MS.gene39192:intron | 30.0% | |
| CAGTTCTTGCTAAATAAAGT+TGG | - | chr1.2:42232771-42232790 | MS.gene39192:intron | 30.0% | |
| CATGACTGAAACTACAAAAT+AGG | + | chr1.2:42228353-42228372 | None:intergenic | 30.0% | |
| CATGAGCAATGCATAATATA+TGG | - | chr1.2:42228369-42228388 | MS.gene39192:intron | 30.0% | |
| CTTGTGTTAAAAACAAGGTA+AGG | + | chr1.2:42229943-42229962 | None:intergenic | 30.0% | |
| GAAAACAGAAAAGTGAACTT+AGG | + | chr1.2:42229254-42229273 | None:intergenic | 30.0% | |
| GAAATATAAGCTCATGTTGA+CGG | + | chr1.2:42231199-42231218 | None:intergenic | 30.0% | |
| GAACTATTGTTTCAAGGTTT+CGG | - | chr1.2:42233137-42233156 | MS.gene39192:CDS | 30.0% | |
| GCCATCCTACAAAATTAAAA+GGG | + | chr1.2:42231484-42231503 | None:intergenic | 30.0% | |
| GGAATTAAAAGTTAGCTGTA+AGG | - | chr1.2:42232651-42232670 | MS.gene39192:intron | 30.0% | |
| GTTAGTTGTGTACATTTGAA+TGG | - | chr1.2:42230343-42230362 | MS.gene39192:intron | 30.0% | |
| TAATTTCTCCTAAACATGGA+AGG | + | chr1.2:42231296-42231315 | None:intergenic | 30.0% | |
| TACTACATTGGTATATTGCA+TGG | + | chr1.2:42232706-42232725 | None:intergenic | 30.0% | |
| TATATGGATAGATAATGCAG+TGG | - | chr1.2:42231386-42231405 | MS.gene39192:intron | 30.0% | |
| TATCCATATAATGTGTGCAT+TGG | + | chr1.2:42231376-42231395 | None:intergenic | 30.0% | |
| TATTAAGGTTCCCTAAGTTT+GGG | + | chr1.2:42228506-42228525 | None:intergenic | 30.0% | |
| TCACTTATAATCAATACTGG+AGG | - | chr1.2:42230567-42230586 | MS.gene39192:intron | 30.0% | |
| TCCATATAAATACCAATGGA+GGG | - | chr1.2:42227789-42227808 | MS.gene39192:intron | 30.0% | |
| TGAAATTTGAATCATGCAAG+AGG | + | chr1.2:42229093-42229112 | None:intergenic | 30.0% | |
| TGATCAACTACAAATCTCTT+TGG | - | chr1.2:42233048-42233067 | MS.gene39192:CDS | 30.0% | |
| TGATGTTATAAAAGATGGGT+TGG | + | chr1.2:42231713-42231732 | None:intergenic | 30.0% | |
| TGCAAATTCAACAACCAAAA+TGG | + | chr1.2:42231934-42231953 | None:intergenic | 30.0% | |
| TGGGAATATTAACAATGTAG+GGG | - | chr1.2:42227853-42227872 | MS.gene39192:intron | 30.0% | |
| TGTTGAGAGATTACTTATCT+TGG | - | chr1.2:42230949-42230968 | MS.gene39192:intron | 30.0% | |
| TTATTAAGGTTCCCTAAGTT+TGG | + | chr1.2:42228507-42228526 | None:intergenic | 30.0% | |
| TTTCTCAGGAGACTTTATTA+AGG | + | chr1.2:42228521-42228540 | None:intergenic | 30.0% | |
| TTTCTTACATTTGCACTAGA+AGG | - | chr1.2:42232952-42232971 | MS.gene39192:CDS | 30.0% | |
| ! | AATTTTCAAACCACCAAAAC+AGG | + | chr1.2:42229425-42229444 | None:intergenic | 30.0% |
| ! | ACGGAACTAATTTTTCTCTT+TGG | - | chr1.2:42229146-42229165 | MS.gene39192:intron | 30.0% |
| ! | AGAGGGTGAATTTTCTAATT+TGG | - | chr1.2:42229523-42229542 | MS.gene39192:intron | 30.0% |
| ! | AGGTTTAAAATTTCCCTTTC+TGG | - | chr1.2:42230151-42230170 | MS.gene39192:intron | 30.0% |
| ! | AGTTGATCAACGATAGTTTT+AGG | + | chr1.2:42233037-42233056 | None:intergenic | 30.0% |
| ! | ATCAGTTTTCCAAACATGAA+GGG | - | chr1.2:42228703-42228722 | MS.gene39192:intron | 30.0% |
| ! | ATTACCTAACCTCTTTTCAA+AGG | - | chr1.2:42230123-42230142 | MS.gene39192:intron | 30.0% |
| ! | ATTGCTTGTATCCTTCTTTT+AGG | - | chr1.2:42230868-42230887 | MS.gene39192:intron | 30.0% |
| ! | CAATGACTCTTTTATTCTCA+TGG | - | chr1.2:42230457-42230476 | MS.gene39192:intron | 30.0% |
| ! | CTGCAATTTGAAGAATCTTT+TGG | - | chr1.2:42227833-42227852 | MS.gene39192:intron | 30.0% |
| ! | CTGCAGATATGTACTTATTT+TGG | - | chr1.2:42228936-42228955 | MS.gene39192:intron | 30.0% |
| ! | GAAAGGGAAATTTTAAACCT+CGG | + | chr1.2:42230151-42230170 | None:intergenic | 30.0% |
| ! | GATGTTATAAAAGATGGGTT+GGG | + | chr1.2:42231712-42231731 | None:intergenic | 30.0% |
| ! | GGGTGATTAGTTATAAATCA+AGG | + | chr1.2:42228485-42228504 | None:intergenic | 30.0% |
| ! | TATGTTTTCGTTACCTGTTT+TGG | - | chr1.2:42229409-42229428 | MS.gene39192:CDS | 30.0% |
| ! | TATTTGATATCTGACTTGTG+AGG | - | chr1.2:42228782-42228801 | MS.gene39192:intron | 30.0% |
| ! | TCATTGATGCATTTGATAAC+AGG | + | chr1.2:42227742-42227761 | None:intergenic | 30.0% |
| ! | TGCTTATATTTAAAACCGGA+GGG | - | chr1.2:42228033-42228052 | MS.gene39192:intron | 30.0% |
| ! | TGCTTATATTTAAAACCGGA+GGG | + | chr1.2:42228052-42228033 | None:intergenic | 30.0% |
| ! | TTGCTTATATTTAAAACCGG+AGG | - | chr1.2:42228032-42228051 | MS.gene39192:intron | 30.0% |
| ! | TTGCTTATATTTAAAACCGG+AGG | + | chr1.2:42228051-42228032 | None:intergenic | 30.0% |
| ! | TTTAGGATAGGCAACATTAA+GGG | + | chr1.2:42230406-42230425 | None:intergenic | 30.0% |
| !! | ATCATTTTTCAGATGGAAGA+GGG | - | chr1.2:42230793-42230812 | MS.gene39192:intron | 30.0% |
| !! | GAGTTAAATGCTTTGTTTGT+TGG | - | chr1.2:42229735-42229754 | MS.gene39192:intron | 30.0% |
| !! | TCATTGAATGCTCTACTTTT+TGG | + | chr1.2:42231511-42231530 | None:intergenic | 30.0% |
| !!! | ATTGAAGGGTATTTTAGGAT+AGG | + | chr1.2:42230418-42230437 | None:intergenic | 30.0% |
| !!! | GAATTTTCTAATTTGGCTTG+CGG | - | chr1.2:42229530-42229549 | MS.gene39192:intron | 30.0% |
| !!! | TACCTTGTTTTTAACACAAG+AGG | - | chr1.2:42229943-42229962 | MS.gene39192:intron | 30.0% |
| !!! | TCCCTTTTAATTTTGTAGGA+TGG | - | chr1.2:42231480-42231499 | MS.gene39192:CDS | 30.0% |
| !!! | TTTCATCTACCCTTTTTTCT+CGG | - | chr1.2:42230619-42230638 | MS.gene39192:intron | 30.0% |
| !!! | TTTTAGGATAGGCAACATTA+AGG | + | chr1.2:42230407-42230426 | None:intergenic | 30.0% |
| AACACTGATGTACCATTGTT+TGG | + | chr1.2:42230990-42231009 | None:intergenic | 35.0% | |
| AACTAATCACCCCAAACTTA+GGG | - | chr1.2:42228493-42228512 | MS.gene39192:intron | 35.0% | |
| AAGTACAGTTGTCTCAAAAC+TGG | - | chr1.2:42231244-42231263 | MS.gene39192:intron | 35.0% | |
| AATCAAATTCATCCCTCCAT+TGG | + | chr1.2:42227804-42227823 | None:intergenic | 35.0% | |
| AATCATTGGCAGAACACTTT+AGG | - | chr1.2:42231732-42231751 | MS.gene39192:intron | 35.0% | |
| ACAAACCTTCATCAATGTCA+CGG | + | chr1.2:42231428-42231447 | None:intergenic | 35.0% | |
| ACCACAGTCATGATTATAGA+AGG | + | chr1.2:42231146-42231165 | None:intergenic | 35.0% | |
| ACCTTGTGAAAATTGTGTCT+CGG | - | chr1.2:42229609-42229628 | MS.gene39192:intron | 35.0% | |
| AGAAAAAAACATACTCCCTC+CGG | + | chr1.2:42228051-42228070 | None:intergenic | 35.0% | |
| AGAGTAGAAGAAACGCATAT+GGG | + | chr1.2:42232083-42232102 | None:intergenic | 35.0% | |
| AGCCTCTTGTGTTAAAAACA+AGG | + | chr1.2:42229948-42229967 | None:intergenic | 35.0% | |
| ATCCCAATGCACACATTATA+TGG | - | chr1.2:42231370-42231389 | MS.gene39192:intron | 35.0% | |
| ATCCTATGATAGGCAATTTC+TGG | - | chr1.2:42229988-42230007 | MS.gene39192:intron | 35.0% | |
| ATGGAACAACTTCTCATGAA+GGG | - | chr1.2:42230476-42230495 | MS.gene39192:intron | 35.0% | |
| ATTAAGGTTCCCTAAGTTTG+GGG | + | chr1.2:42228505-42228524 | None:intergenic | 35.0% | |
| CAAGTACAAGTTGTCAAAGA+GGG | - | chr1.2:42229506-42229525 | MS.gene39192:intron | 35.0% | |
| CAGTCATGATTATAGAAGGA+AGG | + | chr1.2:42231142-42231161 | None:intergenic | 35.0% | |
| CATGTACCAAACAACACTAT+AGG | + | chr1.2:42231818-42231837 | None:intergenic | 35.0% | |
| GAAAATTGTGTCTCGGATAA+AGG | - | chr1.2:42229616-42229635 | MS.gene39192:CDS | 35.0% | |
| GAAAGAAAACAAGACATTGG+GGG | + | chr1.2:42232282-42232301 | None:intergenic | 35.0% | |
| GAATCATTGAGAACTACTAG+TGG | + | chr1.2:42230384-42230403 | None:intergenic | 35.0% | |
| GCATAAGAGAATGACTATGA+AGG | + | chr1.2:42232842-42232861 | None:intergenic | 35.0% | |
| GTCCATATAAATACCAATGG+AGG | - | chr1.2:42227788-42227807 | MS.gene39192:intron | 35.0% | |
| TAAACAGGATTGGGAAATTC+GGG | - | chr1.2:42229659-42229678 | MS.gene39192:CDS | 35.0% | |
| TAACTAATCACCCCAAACTT+AGG | - | chr1.2:42228492-42228511 | MS.gene39192:intron | 35.0% | |
| TAATGCAGTGGCAAAATTGA+AGG | - | chr1.2:42231398-42231417 | MS.gene39192:intron | 35.0% | |
| TAGAAAAGGATGCTTGTCTT+AGG | - | chr1.2:42231647-42231666 | MS.gene39192:intron | 35.0% | |
| TAGATCTGAATGACTTACCA+TGG | - | chr1.2:42232243-42232262 | MS.gene39192:intron | 35.0% | |
| TATGTCAAGACTATCACTTC+TGG | + | chr1.2:42230213-42230232 | None:intergenic | 35.0% | |
| TCAAGTACAAGTTGTCAAAG+AGG | - | chr1.2:42229505-42229524 | MS.gene39192:intron | 35.0% | |
| TCATTCATGCAAGATACTAG+TGG | + | chr1.2:42232578-42232597 | None:intergenic | 35.0% | |
| TCCATTGTACTGTTTGAATC+AGG | + | chr1.2:42229316-42229335 | None:intergenic | 35.0% | |
| TCCCTCCATTGGTATTTATA+TGG | + | chr1.2:42227793-42227812 | None:intergenic | 35.0% | |
| TCCTTCTATAATCATGACTG+TGG | - | chr1.2:42231142-42231161 | MS.gene39192:intron | 35.0% | |
| TGAGATGAAAGCAAATTGGA+TGG | - | chr1.2:42228992-42229011 | MS.gene39192:intron | 35.0% | |
| TGGTTGTTGAATTTGCATCT+GGG | - | chr1.2:42231937-42231956 | MS.gene39192:intron | 35.0% | |
| TTACTATAAGATAGCAGACC+TGG | - | chr1.2:42232980-42232999 | MS.gene39192:CDS | 35.0% | |
| TTCCTTCGAAAACTAATGAG+TGG | + | chr1.2:42230652-42230671 | None:intergenic | 35.0% | |
| TTCGAAAACTAATGAGTGGT+AGG | + | chr1.2:42230648-42230667 | None:intergenic | 35.0% | |
| TTGAATCAGGCTTACTGTAA+GGG | + | chr1.2:42229303-42229322 | None:intergenic | 35.0% | |
| TTGGTTGTTGAATTTGCATC+TGG | - | chr1.2:42231936-42231955 | MS.gene39192:intron | 35.0% | |
| TTTGAATCAGGCTTACTGTA+AGG | + | chr1.2:42229304-42229323 | None:intergenic | 35.0% | |
| ! | AATTTCCCTTTCTGGTAAAG+CGG | - | chr1.2:42230159-42230178 | MS.gene39192:intron | 35.0% |
| ! | ACAATGGTACATCAGTGTTT+TGG | - | chr1.2:42230991-42231010 | MS.gene39192:intron | 35.0% |
| ! | ACTTTTCTGTTTTCCTGTGA+GGG | - | chr1.2:42229260-42229279 | MS.gene39192:intron | 35.0% |
| ! | AGGTTAGGTAATTGTCACTT+AGG | + | chr1.2:42230115-42230134 | None:intergenic | 35.0% |
| ! | ATCCTTTTCTATCCAGGTTA+TGG | + | chr1.2:42231638-42231657 | None:intergenic | 35.0% |
| ! | ATTGAGAACTACTAGTGGAT+TGG | + | chr1.2:42230379-42230398 | None:intergenic | 35.0% |
| ! | CATCAGTTTTCCAAACATGA+AGG | - | chr1.2:42228702-42228721 | MS.gene39192:intron | 35.0% |
| ! | GAATGACTTACCATGGATTT+TGG | - | chr1.2:42232250-42232269 | MS.gene39192:intron | 35.0% |
| ! | GACACATGAGATGATTTTAG+AGG | - | chr1.2:42230250-42230269 | MS.gene39192:CDS | 35.0% |
| ! | GTTTTCAATGCAATTGTAGC+AGG | - | chr1.2:42233159-42233178 | MS.gene39192:CDS | 35.0% |
| ! | TCTATGCGTGTGTAATTTTC+TGG | + | chr1.2:42231324-42231343 | None:intergenic | 35.0% |
| ! | TTATGTTTCTATGCTCTCAC+AGG | + | chr1.2:42232609-42232628 | None:intergenic | 35.0% |
| !! | CATCATTTTTCAGATGGAAG+AGG | - | chr1.2:42230792-42230811 | MS.gene39192:intron | 35.0% |
| !! | TCATTTTTCAGATGGAAGAG+GGG | - | chr1.2:42230794-42230813 | MS.gene39192:intron | 35.0% |
| !!! | ACTTACCATGGATTTTGGTT+TGG | - | chr1.2:42232255-42232274 | MS.gene39192:intron | 35.0% |
| !!! | TACCACTCATTAGTTTTCGA+AGG | - | chr1.2:42230647-42230666 | MS.gene39192:intron | 35.0% |
| AAATGTCATGTGCCAAAGCT+AGG | - | chr1.2:42228161-42228180 | MS.gene39192:intron | 40.0% | |
| AACCAAAATGGCATCAAGCT+TGG | + | chr1.2:42231922-42231941 | None:intergenic | 40.0% | |
| AACGTAACGAACCCAAAGAT+TGG | + | chr1.2:42231892-42231911 | None:intergenic | 40.0% | |
| AAGAAAAAAACGAACGCACC+AGG | + | chr1.2:42227583-42227602 | None:intergenic | 40.0% | |
| AATTTGCATCTGGGAAAGGT+TGG | - | chr1.2:42231946-42231965 | MS.gene39192:intron | 40.0% | |
| ACAAAATCTGGTCCATAACC+TGG | - | chr1.2:42231623-42231642 | MS.gene39192:intron | 40.0% | |
| ACATTGGAACCCTTCATGTT+TGG | + | chr1.2:42228715-42228734 | None:intergenic | 40.0% | |
| ACCTATTACGGATTCGCTAA+GGG | + | chr1.2:42232035-42232054 | None:intergenic | 40.0% | |
| AGAAAAAAACGAACGCACCA+GGG | + | chr1.2:42227582-42227601 | None:intergenic | 40.0% | |
| AGATTCAGTCGTTTCTTCTG+AGG | + | chr1.2:42232433-42232452 | None:intergenic | 40.0% | |
| ATCTCATGTGTCAAATTGGC+AGG | + | chr1.2:42230242-42230261 | None:intergenic | 40.0% | |
| CAATGCATTTCGCATTGAGT+TGG | - | chr1.2:42231027-42231046 | MS.gene39192:intron | 40.0% | |
| CATGGAACAACTTCTCATGA+AGG | - | chr1.2:42230475-42230494 | MS.gene39192:intron | 40.0% | |
| CGGAGAGAACTATTGTTTCA+AGG | - | chr1.2:42233131-42233150 | MS.gene39192:CDS | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr1.2:42229917-42229936 | None:intergenic | 40.0% | |
| CTGCAAAACAAGGTTTAGAG+AGG | + | chr1.2:42231350-42231369 | None:intergenic | 40.0% | |
| CTTTAATGTGACTCCTCTAG+TGG | - | chr1.2:42231981-42232000 | MS.gene39192:intron | 40.0% | |
| GACCAGAAATTGCCTATCAT+AGG | + | chr1.2:42229993-42230012 | None:intergenic | 40.0% | |
| GAGAGTAGAAGAAACGCATA+TGG | + | chr1.2:42232084-42232103 | None:intergenic | 40.0% | |
| GCCTGATTCAAACAGTACAA+TGG | - | chr1.2:42229312-42229331 | MS.gene39192:intron | 40.0% | |
| GTCCATAACCTGGATAGAAA+AGG | - | chr1.2:42231633-42231652 | MS.gene39192:intron | 40.0% | |
| GTTAGCTGTAAGGAGCTTAA+AGG | - | chr1.2:42232661-42232680 | MS.gene39192:intron | 40.0% | |
| GTTGAATTTGCATCTGGGAA+AGG | - | chr1.2:42231942-42231961 | MS.gene39192:intron | 40.0% | |
| TAAGTGATAACTACTCCCTC+CGG | - | chr1.2:42227944-42227963 | MS.gene39192:intron | 40.0% | |
| TATAAGATAGCAGACCTGGA+TGG | - | chr1.2:42232984-42233003 | MS.gene39192:CDS | 40.0% | |
| TCGGATAAAGGTCTCATCAT+GGG | - | chr1.2:42229628-42229647 | MS.gene39192:CDS | 40.0% | |
| TGAAACGTGAAGAAGCTAAG+CGG | + | chr1.2:42227313-42227332 | None:intergenic | 40.0% | |
| TGAGACGAAAATGCTTGTGA+CGG | - | chr1.2:42232112-42232131 | MS.gene39192:intron | 40.0% | |
| TGCAATAAGTGCCTTTGTGA+AGG | + | chr1.2:42230839-42230858 | None:intergenic | 40.0% | |
| TTAGCGAATCCGTAATAGGT+GGG | - | chr1.2:42232035-42232054 | MS.gene39192:intron | 40.0% | |
| TTCGCTAAGGGAAAAGCAAA+TGG | + | chr1.2:42232023-42232042 | None:intergenic | 40.0% | |
| ! | ACAAGCATCCTTTTCTATCC+AGG | + | chr1.2:42231644-42231663 | None:intergenic | 40.0% |
| ! | ACGAAGCCTATAGTGTTGTT+TGG | - | chr1.2:42231809-42231828 | MS.gene39192:intron | 40.0% |
| ! | ATATCTGACTTGTGAGGTTG+TGG | - | chr1.2:42228788-42228807 | MS.gene39192:intron | 40.0% |
| ! | CACTTTTCTGTTTTCCTGTG+AGG | - | chr1.2:42229259-42229278 | MS.gene39192:intron | 40.0% |
| ! | GGTTCCTTTGAAAAGAGGTT+AGG | + | chr1.2:42230130-42230149 | None:intergenic | 40.0% |
| ! | GTGTGCAATTTACTGATTGG+TGG | - | chr1.2:42229681-42229700 | MS.gene39192:intron | 40.0% |
| ! | TCCGAGACACAATTTTCACA+AGG | + | chr1.2:42229613-42229632 | None:intergenic | 40.0% |
| !! | ATGATAGGCAATTTCTGGTC+TGG | - | chr1.2:42229993-42230012 | MS.gene39192:intron | 40.0% |
| !! | GATGAAAAGTGCTTGCTAGT+TGG | + | chr1.2:42230606-42230625 | None:intergenic | 40.0% |
| !! | GTTTTCGTTACCTGTTTTGG+TGG | - | chr1.2:42229412-42229431 | MS.gene39192:CDS | 40.0% |
| !! | TAAAAGATGGGTTGGGAAAG+AGG | + | chr1.2:42231705-42231724 | None:intergenic | 40.0% |
| !! | TAGTTTTACCGACCTCACAT+TGG | + | chr1.2:42228731-42228750 | None:intergenic | 40.0% |
| !! | TTGGCTTGCATGATCATATC+AGG | - | chr1.2:42230182-42230201 | MS.gene39192:intron | 40.0% |
| !!! | TTTTCTAATTTGGCTTGCGG+TGG | - | chr1.2:42229533-42229552 | MS.gene39192:intron | 40.0% |
| AACCTTCATCAATGTCACGG+AGG | + | chr1.2:42231425-42231444 | None:intergenic | 45.0% | |
| AATTGTAGCAGGTGCTTGCA+TGG | - | chr1.2:42233170-42233189 | MS.gene39192:CDS | 45.0% | |
| ACATGAAGGGTTCCAATGTG+AGG | - | chr1.2:42228716-42228735 | MS.gene39192:intron | 45.0% | |
| ACCTTCATCAATGTCACGGA+GGG | + | chr1.2:42231424-42231443 | None:intergenic | 45.0% | |
| ACTCTTCACTAGCTAAAGCG+AGG | + | chr1.2:42232490-42232509 | None:intergenic | 45.0% | |
| AGCATTTCCAACAGCAGCTT+CGG | + | chr1.2:42231107-42231126 | None:intergenic | 45.0% | |
| ATGAGATCTCCAGTAGGGAT+TGG | + | chr1.2:42227434-42227453 | None:intergenic | 45.0% | |
| CACCTATTACGGATTCGCTA+AGG | + | chr1.2:42232036-42232055 | None:intergenic | 45.0% | |
| CGGATAAAGGTCTCATCATG+GGG | - | chr1.2:42229629-42229648 | MS.gene39192:CDS | 45.0% | |
| CGGGTGTGCAATTTACTGAT+TGG | - | chr1.2:42229678-42229697 | MS.gene39192:intron | 45.0% | |
| CTCGGATAAAGGTCTCATCA+TGG | - | chr1.2:42229627-42229646 | MS.gene39192:CDS | 45.0% | |
| CTGCTATATTGATGCCAGTC+TGG | - | chr1.2:42233097-42233116 | MS.gene39192:CDS | 45.0% | |
| CTTAGCGAATCCGTAATAGG+TGG | - | chr1.2:42232034-42232053 | MS.gene39192:intron | 45.0% | |
| GAGAATGTGAAGAGGTGAAG+TGG | + | chr1.2:42227341-42227360 | None:intergenic | 45.0% | |
| GCATTGGGATCTGCAAAACA+AGG | + | chr1.2:42231360-42231379 | None:intergenic | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr1.2:42229918-42229937 | None:intergenic | 45.0% | |
| GCTAAGGAATGCCTTCACAA+AGG | - | chr1.2:42230825-42230844 | MS.gene39192:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | chr1.2:42229921-42229940 | None:intergenic | 45.0% | |
| GGTAGGCATCCGAGAAAAAA+GGG | + | chr1.2:42230631-42230650 | None:intergenic | 45.0% | |
| GTGCTTTGCTGCCAATCTTT+GGG | - | chr1.2:42231878-42231897 | MS.gene39192:intron | 45.0% | |
| GTGTCAAACAGCAGCAATTG+CGG | + | chr1.2:42228621-42228640 | None:intergenic | 45.0% | |
| TCCCTTAGCGAATCCGTAAT+AGG | - | chr1.2:42232031-42232050 | MS.gene39192:intron | 45.0% | |
| TCTGTAAGGGAGACTTGGAT+GGG | + | chr1.2:42227380-42227399 | None:intergenic | 45.0% | |
| TGAGATCTCCAGTAGGGATT+GGG | + | chr1.2:42227433-42227452 | None:intergenic | 45.0% | |
| TGCAGCTAACCCACCTATTA+CGG | + | chr1.2:42232047-42232066 | None:intergenic | 45.0% | |
| TGGTAGGCATCCGAGAAAAA+AGG | + | chr1.2:42230632-42230651 | None:intergenic | 45.0% | |
| TGTGGATGAGATCTCCAGTA+GGG | + | chr1.2:42227439-42227458 | None:intergenic | 45.0% | |
| TTACCATCTTCGATTGCCGT+GGG | - | chr1.2:42229050-42229069 | MS.gene39192:CDS | 45.0% | |
| TTTACCATCTTCGATTGCCG+TGG | - | chr1.2:42229049-42229068 | MS.gene39192:CDS | 45.0% | |
| ! | ACCTCGGTTCCTTTGAAAAG+AGG | + | chr1.2:42230135-42230154 | None:intergenic | 45.0% |
| ! | ACCTCTTTTCAAAGGAACCG+AGG | - | chr1.2:42230131-42230150 | MS.gene39192:intron | 45.0% |
| ! | CAGTCTGGGATTTACTTGGT+GGG | - | chr1.2:42232159-42232178 | MS.gene39192:intron | 45.0% |
| ! | CTGTTTTCCTGTGAGGGTTA+GGG | - | chr1.2:42229266-42229285 | MS.gene39192:intron | 45.0% |
| ! | GGCTGGTCATAAACAGGATT+GGG | - | chr1.2:42229650-42229669 | MS.gene39192:CDS | 45.0% |
| ! | TCTGGGTTGAGAATGTGAAG+AGG | + | chr1.2:42227349-42227368 | None:intergenic | 45.0% |
| ! | TCTGTTTTCCTGTGAGGGTT+AGG | - | chr1.2:42229265-42229284 | MS.gene39192:intron | 45.0% |
| !! | AAGAGGGGTTCAACTTGCTA+AGG | - | chr1.2:42230809-42230828 | MS.gene39192:intron | 45.0% |
| !! | GAGAACTACTAGTGGATTGG+AGG | + | chr1.2:42230376-42230395 | None:intergenic | 45.0% |
| !! | TGCCAAGCTTGATGCCATTT+TGG | - | chr1.2:42231917-42231936 | MS.gene39192:intron | 45.0% |
| !!! | ATTCATTTTATTTTATTTTT+TGG | + | chr1.2:42229216-42229235 | None:intergenic | 5.0% |
| !!! | ATTTTTATCTATTTATATAT+TGG | - | chr1.2:42232304-42232323 | MS.gene39192:intron | 5.0% |
| AAAAGGGGGAGGAGAGGTTA+GGG | + | chr1.2:42227535-42227554 | None:intergenic | 50.0% | |
| AAACAGCAGCAATTGCGGTG+CGG | + | chr1.2:42228616-42228635 | None:intergenic | 50.0% | |
| AAACCCACGGCAATCGAAGA+TGG | + | chr1.2:42229056-42229075 | None:intergenic | 50.0% | |
| AGCCAACCGCTTTACCAGAA+AGG | + | chr1.2:42230168-42230187 | None:intergenic | 50.0% | |
| AGTCTCCCTTACAGACACAG+TGG | - | chr1.2:42227385-42227404 | MS.gene39192:CDS | 50.0% | |
| CAAAGAACCCTAACCCTCAC+AGG | + | chr1.2:42229276-42229295 | None:intergenic | 50.0% | |
| CCAAGTAAATCCCAGACTGG+AGG | + | chr1.2:42232158-42232177 | None:intergenic | 50.0% | |
| CCACCAAGTAAATCCCAGAC+TGG | + | chr1.2:42232161-42232180 | None:intergenic | 50.0% | |
| CCCTAAAAAAAAGGGCAGCC+CGG | - | chr1.2:42229851-42229870 | MS.gene39192:intron | 50.0% | |
| CGGCAACGGTGAGAACAAAA+GGG | + | chr1.2:42227551-42227570 | None:intergenic | 50.0% | |
| CTGTGTCTGTAAGGGAGACT+TGG | + | chr1.2:42227385-42227404 | None:intergenic | 50.0% | |
| GAAGGGTTCCAATGTGAGGT+CGG | - | chr1.2:42228720-42228739 | MS.gene39192:intron | 50.0% | |
| GATTGGGCGAGTTGCGAATA+CGG | + | chr1.2:42227417-42227436 | None:intergenic | 50.0% | |
| GCAACGGTGAGAACAAAAGG+GGG | + | chr1.2:42227549-42227568 | None:intergenic | 50.0% | |
| GCCAACCGCTTTACCAGAAA+GGG | + | chr1.2:42230167-42230186 | None:intergenic | 50.0% | |
| GGCAACGGTGAGAACAAAAG+GGG | + | chr1.2:42227550-42227569 | None:intergenic | 50.0% | |
| GGGGACCAAACCAAAATCCA+TGG | + | chr1.2:42232263-42232282 | None:intergenic | 50.0% | |
| GGTGCTTTGCTGCCAATCTT+TGG | - | chr1.2:42231877-42231896 | MS.gene39192:intron | 50.0% | |
| GTCTCCCTTACAGACACAGT+GGG | - | chr1.2:42227386-42227405 | MS.gene39192:CDS | 50.0% | |
| GTCTGTAAGGGAGACTTGGA+TGG | + | chr1.2:42227381-42227400 | None:intergenic | 50.0% | |
| GTGTGGATGAGATCTCCAGT+AGG | + | chr1.2:42227440-42227459 | None:intergenic | 50.0% | |
| TAAAGGTCTCATCATGGGGC+TGG | - | chr1.2:42229633-42229652 | MS.gene39192:CDS | 50.0% | |
| TAAGGGAGACTTGGATGGGA+GGG | + | chr1.2:42227376-42227395 | None:intergenic | 50.0% | |
| TGCTTTCGTACCTCCAGTCT+GGG | - | chr1.2:42232145-42232164 | MS.gene39192:intron | 50.0% | |
| TTGCTTTCGTACCTCCAGTC+TGG | - | chr1.2:42232144-42232163 | MS.gene39192:intron | 50.0% | |
| ! | ATGCTGGAGCTTTAGTGCAC+CGG | + | chr1.2:42229873-42229892 | None:intergenic | 50.0% |
| ! | ATTGGCAGCAAAGCACCCAA+GGG | + | chr1.2:42231874-42231893 | None:intergenic | 50.0% |
| ! | CCAGTCTGGGATTTACTTGG+TGG | - | chr1.2:42232158-42232177 | MS.gene39192:intron | 50.0% |
| ! | CCTCCAGTCTGGGATTTACT+TGG | - | chr1.2:42232155-42232174 | MS.gene39192:intron | 50.0% |
| ! | CTGACTTGTGAGGTTGTGGA+AGG | - | chr1.2:42228792-42228811 | MS.gene39192:intron | 50.0% |
| ! | TCCCTTTCTGGTAAAGCGGT+TGG | - | chr1.2:42230163-42230182 | MS.gene39192:intron | 50.0% |
| !! | GCATTTCGCATTGAGTTGGC+TGG | - | chr1.2:42231031-42231050 | MS.gene39192:intron | 50.0% |
| !! | GGGCTGGTCATAAACAGGAT+TGG | - | chr1.2:42229649-42229668 | MS.gene39192:CDS | 50.0% |
| !! | TAATTTGGCTTGCGGTGGAG+TGG | - | chr1.2:42229538-42229557 | MS.gene39192:intron | 50.0% |
| !! | TCATGGGGCTGGTCATAAAC+AGG | - | chr1.2:42229644-42229663 | MS.gene39192:CDS | 50.0% |
| !! | TTTCGCATTGAGTTGGCTGG+TGG | - | chr1.2:42231034-42231053 | MS.gene39192:intron | 50.0% |
| !!! | ACCGGGCTGCCCTTTTTTTT+AGG | + | chr1.2:42229855-42229874 | None:intergenic | 50.0% |
| !!! | CCGGGCTGCCCTTTTTTTTA+GGG | + | chr1.2:42229854-42229873 | None:intergenic | 50.0% |
| AACGCACCAGGGTAAGAGTG+CGG | + | chr1.2:42227571-42227590 | None:intergenic | 55.0% | |
| AAGGGAGACTTGGATGGGAG+GGG | + | chr1.2:42227375-42227394 | None:intergenic | 55.0% | |
| ACGGTGAGAACAAAAGGGGG+AGG | + | chr1.2:42227546-42227565 | None:intergenic | 55.0% | |
| ATTGATGCCAGTCTGGACCG+CGG | - | chr1.2:42233104-42233123 | MS.gene39192:CDS | 55.0% | |
| CAAAAGGGGGAGGAGAGGTT+AGG | + | chr1.2:42227536-42227555 | None:intergenic | 55.0% | |
| CAAGAGTAACAGACGGGGTG+GGG | + | chr1.2:42227500-42227519 | None:intergenic | 55.0% | |
| CCTGGATGGTAGCAAGTTGC+TGG | - | chr1.2:42232998-42233017 | MS.gene39192:CDS | 55.0% | |
| CGAGGCAAGAGTAACAGACG+GGG | + | chr1.2:42227505-42227524 | None:intergenic | 55.0% | |
| GAGAACAAAAGGGGGAGGAG+AGG | + | chr1.2:42227541-42227560 | None:intergenic | 55.0% | |
| GCAAGAGTAACAGACGGGGT+GGG | + | chr1.2:42227501-42227520 | None:intergenic | 55.0% | |
| GCCCTCCGTGACATTGATGA+AGG | - | chr1.2:42231420-42231439 | MS.gene39192:intron | 55.0% | |
| GCGACCCACTGTGTCTGTAA+GGG | + | chr1.2:42227393-42227412 | None:intergenic | 55.0% | |
| GCGAGGCAAGAGTAACAGAC+GGG | + | chr1.2:42227506-42227525 | None:intergenic | 55.0% | |
| GCGGCAACGGTGAGAACAAA+AGG | + | chr1.2:42227552-42227571 | None:intergenic | 55.0% | |
| GGCGAGGCAAGAGTAACAGA+CGG | + | chr1.2:42227507-42227526 | None:intergenic | 55.0% | |
| GTAAGGGAGACTTGGATGGG+AGG | + | chr1.2:42227377-42227396 | None:intergenic | 55.0% | |
| GTAGAAGCCGAAGCTGCTGT+TGG | - | chr1.2:42231097-42231116 | MS.gene39192:intron | 55.0% | |
| TAGACAGTGCAGCCACCCTT+GGG | - | chr1.2:42231856-42231875 | MS.gene39192:intron | 55.0% | |
| TCGAGTGCAGAGACCACTAG+AGG | + | chr1.2:42231997-42232016 | None:intergenic | 55.0% | |
| TGGGAAGGAGTCCCACCATT+TGG | - | chr1.2:42229903-42229922 | MS.gene39192:intron | 55.0% | |
| ! | ATAGTTCTCTCCGAGCACCG+CGG | + | chr1.2:42233124-42233143 | None:intergenic | 55.0% |
| ! | GATTGGCAGCAAAGCACCCA+AGG | + | chr1.2:42231875-42231894 | None:intergenic | 55.0% |
| ! | TGCTGGAGCTTTAGTGCACC+GGG | + | chr1.2:42229872-42229891 | None:intergenic | 55.0% |
| !! | CCAGCAACTTGCTACCATCC+AGG | + | chr1.2:42233001-42233020 | None:intergenic | 55.0% |
| !! | GCATTGAGTTGGCTGGTGGT+GGG | - | chr1.2:42231038-42231057 | MS.gene39192:intron | 55.0% |
| AGAGGTTAGGGAGTCTGGCG+AGG | + | chr1.2:42227523-42227542 | None:intergenic | 60.0% | |
| AGCATACGCAGCGTCTGGGA+AGG | - | chr1.2:42229888-42229907 | MS.gene39192:intron | 60.0% | |
| AGGGAGACTTGGATGGGAGG+GGG | + | chr1.2:42227374-42227393 | None:intergenic | 60.0% | |
| CGCGACCCACTGTGTCTGTA+AGG | + | chr1.2:42227394-42227413 | None:intergenic | 60.0% | |
| CTAGACAGTGCAGCCACCCT+TGG | - | chr1.2:42231855-42231874 | MS.gene39192:intron | 60.0% | |
| CTCCAGCATACGCAGCGTCT+GGG | - | chr1.2:42229884-42229903 | MS.gene39192:intron | 60.0% | |
| GCAACTCGCCCAATCCCTAC+TGG | - | chr1.2:42227422-42227441 | MS.gene39192:intron | 60.0% | |
| GGAAGGTGAAGGGTGGCAGA+CGG | + | chr1.2:42227474-42227493 | None:intergenic | 60.0% | |
| GGAGGAGAGGTTAGGGAGTC+TGG | + | chr1.2:42227528-42227547 | None:intergenic | 60.0% | |
| GGCAAGAGTAACAGACGGGG+TGG | + | chr1.2:42227502-42227521 | None:intergenic | 60.0% | |
| TTCCCAGACGCTGCGTATGC+TGG | + | chr1.2:42229889-42229908 | None:intergenic | 60.0% | |
| TTGGATGGGAGGGGGCTTCT+GGG | + | chr1.2:42227366-42227385 | None:intergenic | 60.0% | |
| ! | CCAGGGTAAGAGTGCGGCAA+CGG | + | chr1.2:42227565-42227584 | None:intergenic | 60.0% |
| !! | CGCATTGAGTTGGCTGGTGG+TGG | - | chr1.2:42231037-42231056 | MS.gene39192:intron | 60.0% |
| AGGGTGGCAGACGGCAGGTT+CGG | + | chr1.2:42227465-42227484 | None:intergenic | 65.0% | |
| CAGCAGCAATTGCGGTGCGG+TGG | + | chr1.2:42228613-42228632 | None:intergenic | 65.0% | |
| CCGTTGCCGCACTCTTACCC+TGG | - | chr1.2:42227562-42227581 | MS.gene39192:intron | 65.0% | |
| CTTGGATGGGAGGGGGCTTC+TGG | + | chr1.2:42227367-42227386 | None:intergenic | 65.0% | |
| GCTCCAGCATACGCAGCGTC+TGG | - | chr1.2:42229883-42229902 | MS.gene39192:intron | 65.0% | |
| GGTGGGGAGCGGAAGGTGAA+GGG | + | chr1.2:42227484-42227503 | None:intergenic | 65.0% | |
| GTAACAGACGGGGTGGGGAG+CGG | + | chr1.2:42227495-42227514 | None:intergenic | 65.0% | |
| ! | GGCAGCAAAGCACCCAAGGG+TGG | + | chr1.2:42231871-42231890 | None:intergenic | 65.0% |
| AGACGGCAGGTTCGGCGGTG+TGG | + | chr1.2:42227457-42227476 | None:intergenic | 70.0% | |
| CCAGTCTGGACCGCGGTGCT+CGG | - | chr1.2:42233111-42233130 | MS.gene39192:CDS | 70.0% | |
| GGGGAGCGGAAGGTGAAGGG+TGG | + | chr1.2:42227481-42227500 | None:intergenic | 70.0% | |
| GGGTGGGGAGCGGAAGGTGA+AGG | + | chr1.2:42227485-42227504 | None:intergenic | 70.0% | |
| GGTGAAGGGTGGCAGACGGC+AGG | + | chr1.2:42227470-42227489 | None:intergenic | 70.0% | |
| GTGGCAGACGGCAGGTTCGG+CGG | + | chr1.2:42227462-42227481 | None:intergenic | 70.0% | |
| CAGACGGGGTGGGGAGCGGA+AGG | + | chr1.2:42227491-42227510 | None:intergenic | 75.0% | |
| ! | CCGAGCACCGCGGTCCAGAC+TGG | + | chr1.2:42233114-42233133 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 42227287 | 42233199 | 42227287 | ID=MS.gene39192 |
| chr1.2 | mRNA | 42227287 | 42233199 | 42227287 | ID=MS.gene39192.t1;Parent=MS.gene39192 |
| chr1.2 | exon | 42232903 | 42233199 | 42232903 | ID=MS.gene39192.t1.exon1;Parent=MS.gene39192.t1 |
| chr1.2 | CDS | 42232903 | 42233199 | 42232903 | ID=cds.MS.gene39192.t1;Parent=MS.gene39192.t1 |
| chr1.2 | exon | 42231453 | 42231508 | 42231453 | ID=MS.gene39192.t1.exon2;Parent=MS.gene39192.t1 |
| chr1.2 | CDS | 42231453 | 42231508 | 42231453 | ID=cds.MS.gene39192.t1;Parent=MS.gene39192.t1 |
| chr1.2 | exon | 42230215 | 42230341 | 42230215 | ID=MS.gene39192.t1.exon3;Parent=MS.gene39192.t1 |
| chr1.2 | CDS | 42230215 | 42230341 | 42230215 | ID=cds.MS.gene39192.t1;Parent=MS.gene39192.t1 |
| chr1.2 | exon | 42229612 | 42229681 | 42229612 | ID=MS.gene39192.t1.exon4;Parent=MS.gene39192.t1 |
| chr1.2 | CDS | 42229612 | 42229681 | 42229612 | ID=cds.MS.gene39192.t1;Parent=MS.gene39192.t1 |
| chr1.2 | exon | 42229323 | 42229505 | 42229323 | ID=MS.gene39192.t1.exon5;Parent=MS.gene39192.t1 |
| chr1.2 | CDS | 42229323 | 42229505 | 42229323 | ID=cds.MS.gene39192.t1;Parent=MS.gene39192.t1 |
| chr1.2 | exon | 42229045 | 42229116 | 42229045 | ID=MS.gene39192.t1.exon6;Parent=MS.gene39192.t1 |
| chr1.2 | CDS | 42229045 | 42229116 | 42229045 | ID=cds.MS.gene39192.t1;Parent=MS.gene39192.t1 |
| chr1.2 | exon | 42227287 | 42227405 | 42227287 | ID=MS.gene39192.t1.exon7;Parent=MS.gene39192.t1 |
| chr1.2 | CDS | 42227287 | 42227405 | 42227287 | ID=cds.MS.gene39192.t1;Parent=MS.gene39192.t1 |
| Gene Sequence |
| Protein sequence |
