AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39413

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39413.t1 MTR_4g089135 96.254 347 10 1 1 347 1 344 0.0 691
MS.gene39413.t1 MTR_2g080010 53.627 386 105 14 1 346 1 352 1.09e-119 349
MS.gene39413.t1 MTR_2157s0010 55.253 257 86 6 13 258 6 244 3.00e-87 264
MS.gene39413.t1 MTR_7g085220 64.737 190 41 3 10 192 3 173 3.68e-85 261
MS.gene39413.t1 MTR_7g100990 52.697 241 89 4 14 251 10 228 1.22e-79 246
MS.gene39413.t1 MTR_2g093810 63.842 177 45 2 15 191 14 171 1.90e-78 243
MS.gene39413.t1 MTR_5g041940 62.147 177 46 2 14 190 2 157 8.19e-78 239
MS.gene39413.t1 MTR_4g081870 64.205 176 42 3 15 190 9 163 1.18e-76 237
MS.gene39413.t1 MTR_3g088110 65.922 179 36 3 14 191 6 160 1.38e-76 237
MS.gene39413.t1 MTR_2g079990 62.903 186 44 3 12 197 13 173 6.76e-75 235
MS.gene39413.t1 MTR_2g079990 61.780 191 66 3 12 197 13 201 2.11e-74 235
MS.gene39413.t1 MTR_8g059170 64.641 181 41 3 12 192 11 168 2.13e-74 233
MS.gene39413.t1 MTR_8g094580 58.416 202 47 5 15 207 7 180 6.23e-73 228
MS.gene39413.t1 MTR_3g096920 59.474 190 46 4 14 196 6 171 2.98e-70 221
MS.gene39413.t1 MTR_3g096920 54.106 207 67 5 14 196 6 208 3.58e-65 209
MS.gene39413.t1 MTR_5g040420 50.811 185 73 3 15 198 14 181 8.77e-62 202
MS.gene39413.t1 MTR_6g011860 51.064 188 71 4 15 199 15 184 8.61e-61 200
MS.gene39413.t1 MTR_8g467490 51.136 176 72 1 17 192 16 177 1.04e-60 200
MS.gene39413.t1 MTR_7g005280 54.444 180 54 3 12 191 12 163 1.16e-59 192
MS.gene39413.t1 MTR_6g084430 49.730 185 66 3 12 196 2 159 8.09e-57 187
MS.gene39413.t1 MTR_2g078700 51.685 178 65 3 14 191 22 178 1.65e-56 188
MS.gene39413.t1 MTR_2g064090 41.736 242 112 5 15 251 6 223 4.59e-56 186
MS.gene39413.t1 MTR_4g108760 49.718 177 66 3 15 191 17 170 2.74e-55 184
MS.gene39413.t1 MTR_3g109340 49.153 177 66 2 15 191 22 174 5.09e-54 181
MS.gene39413.t1 MTR_3g109340 48.603 179 63 2 15 191 22 173 8.64e-54 181
MS.gene39413.t1 MTR_3g435150 50.556 180 66 4 12 191 13 169 2.07e-53 178
MS.gene39413.t1 MTR_4g036030 43.627 204 82 5 14 211 6 182 6.79e-53 178
MS.gene39413.t1 MTR_5g012080 44.390 205 79 6 14 211 6 182 1.06e-52 177
MS.gene39413.t1 MTR_1g008740 48.045 179 62 3 15 189 13 164 1.50e-52 177
MS.gene39413.t1 MTR_1g008740 48.045 179 62 3 15 189 27 178 2.07e-52 177
MS.gene39413.t1 MTR_4g134460 61.905 126 47 1 17 142 56 180 4.28e-52 178
MS.gene39413.t1 MTR_6g012670 47.191 178 71 4 14 191 19 173 4.57e-52 175
MS.gene39413.t1 MTR_6g032770 48.295 176 70 2 15 190 18 172 4.63e-52 177
MS.gene39413.t1 MTR_5g076850 49.231 195 69 5 15 207 6 172 6.67e-52 182
MS.gene39413.t1 MTR_3g064580 46.445 211 81 6 15 223 6 186 6.72e-52 182
MS.gene39413.t1 MTR_3g070030 47.753 178 71 4 15 192 19 174 1.32e-51 175
MS.gene39413.t1 MTR_7g085260 48.370 184 72 4 15 196 17 179 3.08e-51 175
MS.gene39413.t1 MTR_6g477900 47.159 176 66 3 15 188 6 156 7.05e-51 169
MS.gene39413.t1 MTR_1g069805 45.763 177 69 2 15 191 10 159 7.59e-51 171
MS.gene39413.t1 MTR_5g021710 43.367 196 74 5 1 193 1 162 7.61e-51 173
MS.gene39413.t1 MTR_5g090970 46.857 175 74 3 17 188 20 178 1.23e-50 171
MS.gene39413.t1 MTR_2g062730 43.889 180 72 3 15 191 10 163 1.59e-50 172
MS.gene39413.t1 MTR_4g101680 42.927 205 81 5 14 210 6 182 1.43e-49 170
MS.gene39413.t1 MTR_7g097090 46.512 172 65 2 15 186 10 154 2.52e-49 167
MS.gene39413.t1 MTR_5g090970 46.857 175 73 4 17 188 20 177 2.60e-49 167
MS.gene39413.t1 MTR_5g014300 55.072 138 55 2 15 145 6 143 4.03e-49 168
MS.gene39413.t1 MTR_8g076110 44.444 180 70 4 15 191 6 158 4.95e-49 167
MS.gene39413.t1 MTR_4g035590 46.927 179 64 5 15 190 8 158 6.43e-49 168
MS.gene39413.t1 MTR_8g024480 43.617 188 87 5 6 190 6 177 9.67e-49 169
MS.gene39413.t1 MTR_2g068880 47.090 189 81 5 17 198 24 200 1.31e-48 166
MS.gene39413.t1 MTR_1g096430 42.056 214 87 6 5 213 2 183 1.73e-48 166
MS.gene39413.t1 MTR_2g068920 43.961 207 96 5 17 220 23 212 1.75e-48 165
MS.gene39413.t1 MTR_3g116070 50.617 162 66 3 15 175 23 171 4.74e-48 166
MS.gene39413.t1 MTR_2g064470 43.299 194 84 4 12 205 8 175 7.59e-48 164
MS.gene39413.t1 MTR_8g099750 46.629 178 75 3 14 191 13 170 1.38e-47 160
MS.gene39413.t1 MTR_7g011130 45.665 173 84 2 18 190 22 184 2.36e-47 164
MS.gene39413.t1 MTR_4g098630 53.901 141 62 2 15 152 6 146 2.39e-47 163
MS.gene39413.t1 MTR_7g011120 42.778 180 79 3 15 190 8 167 1.38e-45 158
MS.gene39413.t1 MTR_4g075980 42.408 191 80 4 5 194 6 167 3.85e-45 156
MS.gene39413.t1 MTR_3g098810 47.486 179 73 4 15 191 14 173 7.85e-45 154
MS.gene39413.t1 MTR_1g090720 46.067 178 75 3 15 190 42 200 2.40e-44 159
MS.gene39413.t1 MTR_8g094580 52.941 153 35 5 64 207 2 126 1.87e-43 150
MS.gene39413.t1 MTR_3g096140 42.614 176 74 4 15 188 7 157 3.79e-43 150
MS.gene39413.t1 MTR_3g098810 56.061 132 54 2 15 144 14 143 6.28e-43 147
MS.gene39413.t1 MTR_5g069030 45.856 181 69 5 15 192 25 179 7.23e-43 157
MS.gene39413.t1 MTR_1g097300 53.030 132 58 2 17 146 21 150 7.70e-43 156
MS.gene39413.t1 MTR_3g096140 42.614 176 74 4 15 188 7 157 2.60e-42 150
MS.gene39413.t1 MTR_1g090723 43.820 178 72 4 17 191 10 162 2.67e-41 152
MS.gene39413.t1 MTR_0036s0150 45.810 179 66 6 17 191 7 158 4.27e-41 151
MS.gene39413.t1 MTR_3g093050 43.956 182 73 5 15 193 22 177 1.02e-40 150
MS.gene39413.t1 MTR_3g093050 43.956 182 73 5 15 193 22 177 1.11e-40 151
MS.gene39413.t1 MTR_8g023840 49.315 146 67 4 13 152 6 150 3.27e-40 146
MS.gene39413.t1 MTR_1g090723 43.258 178 72 4 17 191 10 161 3.33e-40 149
MS.gene39413.t1 MTR_1g090723 43.258 178 72 4 17 191 10 161 4.00e-40 149
MS.gene39413.t1 MTR_2g086880 50.400 125 59 2 17 140 20 142 8.55e-40 147
MS.gene39413.t1 MTR_2g086880 50.400 125 59 2 17 140 20 142 1.01e-39 148
MS.gene39413.t1 MTR_8g063550 50.000 132 62 2 13 142 4 133 1.37e-39 143
MS.gene39413.t1 MTR_8g063550 50.000 132 62 2 13 142 4 133 1.43e-39 145
MS.gene39413.t1 MTR_3g093040 41.667 180 78 4 15 192 108 262 1.83e-39 142
MS.gene39413.t1 MTR_8g063550 50.000 132 62 2 13 142 4 133 2.87e-39 144
MS.gene39413.t1 MTR_4g094302 39.655 174 80 2 15 188 11 159 1.43e-38 136
MS.gene39413.t1 MTR_3g070040 41.477 176 71 5 19 190 12 159 1.57e-37 137
MS.gene39413.t1 MTR_4g094302 48.438 128 58 1 15 142 11 130 3.41e-37 131
MS.gene39413.t1 MTR_8g093580 48.485 132 64 2 13 142 4 133 3.89e-37 139
MS.gene39413.t1 MTR_4g052620 39.706 204 91 7 15 209 5 185 7.36e-35 128
MS.gene39413.t1 MTR_8g023930 37.981 208 91 7 15 219 24 196 2.84e-34 131
MS.gene39413.t1 MTR_8g023860 43.662 142 76 3 14 152 11 151 5.56e-34 129
MS.gene39413.t1 MTR_2g086690 36.957 230 106 9 16 229 5 211 1.30e-33 125
MS.gene39413.t1 MTR_8g023900 35.349 215 96 6 13 219 186 365 2.58e-33 129
MS.gene39413.t1 MTR_8g023900 44.186 129 68 3 15 140 12 139 1.19e-29 118
MS.gene39413.t1 MTR_3g096140 39.130 161 71 4 30 188 1 136 1.24e-32 124
MS.gene39413.t1 MTR_7g105170 35.912 181 91 5 15 189 4 165 6.35e-31 118
MS.gene39413.t1 MTR_7g070140 48.649 111 54 1 68 175 17 127 9.24e-28 106
MS.gene39413.t1 MTR_8g093790 39.080 174 61 6 15 188 10 138 9.77e-27 104
MS.gene39413.t1 MTR_8g023880 35.714 196 76 7 15 193 7 169 1.97e-25 103
MS.gene39413.t1 MTR_3g096400 35.227 176 89 7 15 187 7 160 6.07e-23 95.5
MS.gene39413.t1 MTR_7g083330 34.965 143 87 4 15 155 18 156 5.40e-20 87.0
MS.gene39413.t1 MTR_7g083370 33.566 143 87 5 7 146 2 139 8.16e-20 85.1
MS.gene39413.t1 MTR_7g083360 34.615 130 79 4 15 142 10 135 3.36e-19 83.6
MS.gene39413.t1 MTR_7g070150 40.698 86 25 2 106 191 1 60 1.89e-13 65.9
MS.gene39413.t1 MTR_4g078875 30.846 201 112 9 13 194 46 238 1.02e-12 68.2
MS.gene39413.t1 MTR_1g087190 62.500 48 15 2 17 62 7 53 1.02e-12 62.8
MS.gene39413.t1 MTR_8g102240 34.437 151 73 8 15 142 47 194 1.89e-11 65.5
MS.gene39413.t1 MTR_8g102240 34.437 151 73 8 15 142 47 194 1.89e-11 65.5
MS.gene39413.t1 MTR_8g069160 27.746 173 106 6 1 157 54 223 4.56e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39413.t1 AT1G61110 53.867 362 112 13 1 347 1 322 2.04e-110 325
MS.gene39413.t1 AT3G15510 50.643 389 121 14 1 346 1 361 1.65e-103 309
MS.gene39413.t1 AT3G04070 63.298 188 66 1 8 192 3 190 9.57e-84 258
MS.gene39413.t1 AT3G04070 62.766 188 51 3 8 192 3 174 2.94e-80 248
MS.gene39413.t1 AT1G69490 60.963 187 52 3 8 194 2 167 3.68e-79 243
MS.gene39413.t1 AT1G52880 52.443 307 112 9 1 292 1 288 1.26e-77 241
MS.gene39413.t1 AT4G27410 62.983 181 42 3 12 192 11 166 2.52e-75 234
MS.gene39413.t1 AT1G01720 64.246 179 42 2 14 192 6 162 1.04e-74 233
MS.gene39413.t1 AT1G52890 64.088 181 40 4 12 192 11 166 2.02e-74 233
MS.gene39413.t1 AT1G77450 64.205 176 38 3 14 188 9 160 5.85e-74 229
MS.gene39413.t1 AT3G15500 64.088 181 40 3 12 192 11 166 1.15e-73 231
MS.gene39413.t1 AT5G08790 55.909 220 71 5 14 231 6 201 2.75e-73 229
MS.gene39413.t1 AT5G63790 63.128 179 43 3 14 191 49 205 6.62e-73 229
MS.gene39413.t1 AT5G63790 63.128 179 43 3 14 191 59 215 7.36e-73 229
MS.gene39413.t1 AT4G27410 57.576 198 42 4 12 192 11 183 5.28e-71 224
MS.gene39413.t1 AT5G39820 52.432 185 80 4 17 198 22 201 1.39e-62 203
MS.gene39413.t1 AT1G26870 50.556 180 75 1 15 194 16 181 1.85e-61 202
MS.gene39413.t1 AT5G13180 53.933 178 55 3 14 191 13 163 6.36e-58 188
MS.gene39413.t1 AT5G39610 51.075 186 67 5 15 199 20 182 1.82e-57 188
MS.gene39413.t1 AT1G76420 50.286 175 63 2 15 189 22 172 8.54e-57 188
MS.gene39413.t1 AT5G18270 49.741 193 75 4 15 207 21 191 1.25e-56 187
MS.gene39413.t1 AT3G18400 49.171 181 66 3 12 192 2 156 4.26e-56 185
MS.gene39413.t1 AT5G61430 52.247 178 62 4 12 189 13 167 5.60e-56 186
MS.gene39413.t1 AT5G53950 49.718 177 68 2 14 190 16 171 1.12e-55 186
MS.gene39413.t1 AT5G18270 48.705 193 77 4 15 207 21 191 1.13e-55 185
MS.gene39413.t1 AT5G07680 52.247 178 62 4 12 189 14 168 1.50e-55 184
MS.gene39413.t1 AT5G07680 52.571 175 60 4 15 189 3 154 1.60e-55 184
MS.gene39413.t1 AT2G24430 48.876 178 67 2 15 192 16 169 4.11e-55 183
MS.gene39413.t1 AT2G24430 48.876 178 67 2 15 192 16 169 4.11e-55 183
MS.gene39413.t1 AT3G29035 61.654 133 49 1 10 142 19 149 6.80e-55 182
MS.gene39413.t1 AT3G04060 50.838 179 66 3 15 193 20 176 3.74e-54 181
MS.gene39413.t1 AT3G15170 48.295 176 70 2 15 190 20 174 1.46e-53 179
MS.gene39413.t1 AT3G03200 45.411 207 83 5 15 219 6 184 1.48e-53 183
MS.gene39413.t1 AT2G02450 47.027 185 69 4 17 198 53 211 4.37e-53 179
MS.gene39413.t1 AT2G02450 47.027 185 69 4 17 198 53 211 5.55e-53 180
MS.gene39413.t1 AT2G33480 50.000 184 56 5 14 193 14 165 9.22e-53 175
MS.gene39413.t1 AT2G33480 50.543 184 57 6 14 193 14 167 5.18e-52 173
MS.gene39413.t1 AT1G71930 40.845 213 90 5 12 219 6 187 2.85e-51 173
MS.gene39413.t1 AT1G71930 40.845 213 90 5 12 219 6 187 2.85e-51 173
MS.gene39413.t1 AT1G12260 46.629 178 65 4 14 188 6 156 3.25e-51 174
MS.gene39413.t1 AT5G17260 44.845 194 77 4 15 206 6 171 3.56e-51 177
MS.gene39413.t1 AT5G46590 50.898 167 68 4 7 165 3 163 4.84e-51 171
MS.gene39413.t1 AT4G36160 45.550 191 69 6 1 188 1 159 4.85e-51 174
MS.gene39413.t1 AT4G36160 45.550 191 69 6 1 188 1 159 4.85e-51 174
MS.gene39413.t1 AT1G12260 46.629 178 65 4 14 188 6 156 5.05e-51 174
MS.gene39413.t1 AT4G36160 45.550 191 69 6 1 188 5 163 5.33e-51 174
MS.gene39413.t1 AT1G79580 43.005 193 80 3 1 190 3 168 5.54e-51 174
MS.gene39413.t1 AT1G79580 43.005 193 80 3 1 190 3 168 5.54e-51 174
MS.gene39413.t1 AT1G79580 43.005 193 80 3 1 190 3 168 5.54e-51 174
MS.gene39413.t1 AT1G79580 43.005 193 80 3 1 190 3 168 5.54e-51 174
MS.gene39413.t1 AT1G79580 43.005 193 80 3 1 190 3 168 5.54e-51 174
MS.gene39413.t1 AT5G46590 55.034 149 59 3 7 153 3 145 6.21e-51 171
MS.gene39413.t1 AT5G62380 47.753 178 63 4 14 188 6 156 7.77e-51 173
MS.gene39413.t1 AT5G62380 47.753 178 63 4 14 188 6 156 7.77e-51 173
MS.gene39413.t1 AT5G66300 43.478 207 80 6 8 207 9 185 2.49e-50 170
MS.gene39413.t1 AT2G18060 45.109 184 67 5 8 188 6 158 4.67e-50 171
MS.gene39413.t1 AT2G18060 45.109 184 67 5 8 188 6 158 4.67e-50 171
MS.gene39413.t1 AT1G65910 40.889 225 97 6 15 236 6 197 5.39e-50 177
MS.gene39413.t1 AT2G43000 42.453 212 92 5 17 222 20 207 6.32e-50 168
MS.gene39413.t1 AT4G17980 54.795 146 57 3 7 148 3 143 1.42e-49 167
MS.gene39413.t1 AT4G17980 55.172 145 56 3 7 147 3 142 1.57e-49 167
MS.gene39413.t1 AT1G56010 41.089 202 96 4 5 205 9 188 1.84e-49 168
MS.gene39413.t1 AT3G17730 47.727 176 65 6 15 188 6 156 2.72e-49 166
MS.gene39413.t1 AT1G62700 44.324 185 73 4 15 196 7 164 3.19e-49 170
MS.gene39413.t1 AT1G62700 44.324 185 73 4 15 196 7 164 3.19e-49 170
MS.gene39413.t1 AT3G10480 45.789 190 77 3 3 190 15 180 1.92e-48 169
MS.gene39413.t1 AT4G10350 45.810 179 69 4 15 190 9 162 3.00e-48 166
MS.gene39413.t1 AT3G10480 45.789 190 76 4 3 190 15 179 4.63e-48 168
MS.gene39413.t1 AT1G33280 44.809 183 70 4 15 194 8 162 4.65e-48 164
MS.gene39413.t1 AT1G54330 47.159 176 63 4 15 188 6 153 3.62e-47 162
MS.gene39413.t1 AT3G12977 43.503 177 76 3 12 188 15 167 3.88e-47 161
MS.gene39413.t1 AT2G46770 42.487 193 96 5 1 190 2 182 4.09e-47 163
MS.gene39413.t1 AT3G61910 42.246 187 91 4 8 190 4 177 5.12e-47 162
MS.gene39413.t1 AT3G10490 43.684 190 81 3 3 190 15 180 5.48e-47 159
MS.gene39413.t1 AT1G32770 41.053 190 94 4 8 194 9 183 5.89e-47 163
MS.gene39413.t1 AT4G28530 42.347 196 70 3 15 194 10 178 2.52e-46 161
MS.gene39413.t1 AT1G32510 40.500 200 90 3 15 207 6 183 3.47e-46 159
MS.gene39413.t1 AT3G10500 45.251 179 71 3 15 191 9 162 4.57e-46 165
MS.gene39413.t1 AT3G10490 43.684 190 81 3 3 190 15 180 2.57e-45 160
MS.gene39413.t1 AT2G17040 39.623 212 91 5 17 224 8 186 1.44e-44 154
MS.gene39413.t1 AT3G12910 47.778 180 77 6 17 192 23 189 2.91e-44 154
MS.gene39413.t1 AT5G04410 45.251 179 71 4 15 191 9 162 3.33e-44 160
MS.gene39413.t1 AT1G34180 43.617 188 97 4 1 181 2 187 4.72e-44 157
MS.gene39413.t1 AT1G33060 46.995 183 70 5 15 195 24 181 1.06e-43 159
MS.gene39413.t1 AT1G33060 46.995 183 70 5 15 195 24 181 1.20e-43 159
MS.gene39413.t1 AT1G34180 43.617 188 97 4 1 181 2 187 2.10e-43 157
MS.gene39413.t1 AT1G34190 45.349 172 85 4 17 181 18 187 2.38e-43 157
MS.gene39413.t1 AT3G10480 39.013 223 77 3 3 190 15 213 3.84e-43 156
MS.gene39413.t1 AT1G34180 41.000 200 97 4 1 181 2 199 2.55e-42 153
MS.gene39413.t1 AT4G35580 56.589 129 52 2 15 141 9 135 3.77e-42 153
MS.gene39413.t1 AT4G35580 56.589 129 52 2 15 141 9 135 3.91e-42 154
MS.gene39413.t1 AT4G35580 56.589 129 52 2 15 141 9 135 4.26e-42 154
MS.gene39413.t1 AT1G34180 41.000 200 97 4 1 181 2 199 1.23e-41 153
MS.gene39413.t1 AT2G27300 51.181 127 59 2 15 140 14 138 1.34e-41 148
MS.gene39413.t1 AT5G24590 55.039 129 55 2 15 141 13 140 2.03e-41 150
MS.gene39413.t1 AT3G49530 51.128 133 62 2 15 145 13 144 1.18e-40 147
MS.gene39413.t1 AT3G49530 51.128 133 62 2 15 145 13 144 1.92e-40 148
MS.gene39413.t1 AT5G09330 51.908 131 59 2 14 142 5 133 2.28e-40 148
MS.gene39413.t1 AT5G09330 51.908 131 59 2 14 142 5 133 2.28e-40 148
MS.gene39413.t1 AT5G09330 51.908 131 59 2 14 142 5 133 2.28e-40 148
MS.gene39413.t1 AT5G09330 51.908 131 59 2 14 142 5 133 2.28e-40 148
MS.gene39413.t1 AT5G09330 51.908 131 59 2 14 142 5 133 2.28e-40 148
MS.gene39413.t1 AT5G64060 49.231 130 62 2 15 142 6 133 1.80e-39 143
MS.gene39413.t1 AT5G64530 42.135 178 82 4 15 192 3 159 1.24e-38 136
MS.gene39413.t1 AT3G44290 41.772 158 79 3 17 163 16 171 1.75e-37 134
MS.gene39413.t1 AT5G22290 43.165 139 76 2 3 140 9 145 2.81e-37 137
MS.gene39413.t1 AT3G44290 46.875 128 65 2 17 143 16 141 7.53e-37 135
MS.gene39413.t1 AT1G32870 56.923 130 50 3 15 142 10 135 1.26e-36 139
MS.gene39413.t1 AT1G32870 56.923 130 50 3 15 142 10 135 1.29e-36 139
MS.gene39413.t1 AT1G32870 56.923 130 50 3 15 142 46 171 3.11e-36 138
MS.gene39413.t1 AT5G64530 49.219 128 53 2 15 142 3 118 1.36e-35 127
MS.gene39413.t1 AT5G04395 39.610 154 79 2 3 142 16 169 2.85e-34 125
MS.gene39413.t1 AT5G61430 50.794 126 39 4 64 189 2 104 4.73e-33 124
MS.gene39413.t1 AT3G44350 34.091 220 104 8 14 222 4 193 3.62e-32 120
MS.gene39413.t1 AT1G56010 40.845 142 62 3 64 205 2 121 1.91e-31 119
MS.gene39413.t1 AT3G04420 44.186 129 66 3 16 140 4 130 1.86e-29 115
MS.gene39413.t1 AT3G04420 44.186 129 66 3 16 140 4 130 4.28e-29 115
MS.gene39413.t1 AT3G44350 40.876 137 71 4 14 143 4 137 5.44e-29 110
MS.gene39413.t1 AT5G22380 37.017 181 86 6 18 192 8 166 7.98e-29 112
MS.gene39413.t1 AT4G28530 38.298 188 91 5 15 180 10 194 1.41e-28 113
MS.gene39413.t1 AT4G01550 41.727 139 77 3 18 152 7 145 1.76e-28 115
MS.gene39413.t1 AT3G12977 43.200 125 47 3 64 188 14 114 6.36e-28 109
MS.gene39413.t1 AT2G33480 46.923 130 38 5 68 193 8 110 1.21e-27 108
MS.gene39413.t1 AT1G02230 42.308 130 67 4 16 140 4 130 1.85e-27 110
MS.gene39413.t1 AT4G10350 45.528 123 42 3 68 190 18 115 2.70e-27 109
MS.gene39413.t1 AT4G01520 43.182 132 70 4 16 142 5 136 6.64e-25 102
MS.gene39413.t1 AT4G01540 43.846 130 68 4 18 142 7 136 2.56e-24 103
MS.gene39413.t1 AT4G01540 43.846 130 68 4 18 142 7 136 3.82e-24 102
MS.gene39413.t1 AT1G02250 41.538 130 68 4 16 140 4 130 4.39e-24 101
MS.gene39413.t1 AT4G01540 43.846 130 68 4 18 142 7 136 5.37e-24 102
MS.gene39413.t1 AT4G01540 43.846 130 68 4 18 142 7 136 6.32e-24 102
MS.gene39413.t1 AT1G02220 40.310 129 68 4 16 140 4 127 1.19e-22 98.2
MS.gene39413.t1 AT5G14000 35.664 143 84 4 15 153 15 153 5.83e-21 88.6
MS.gene39413.t1 AT5G14000 36.923 130 76 3 15 142 15 140 3.70e-20 87.8
MS.gene39413.t1 AT1G01010 38.028 142 72 7 18 146 6 144 9.87e-20 90.1
MS.gene39413.t1 AT2G43000 36.842 152 66 5 77 222 2 129 1.34e-19 85.9
MS.gene39413.t1 AT3G56530 34.286 140 87 3 15 151 52 189 3.74e-17 81.6
MS.gene39413.t1 AT5G50820 32.450 151 86 5 14 162 16 152 1.91e-16 77.0
MS.gene39413.t1 AT3G55210 33.333 186 81 9 15 186 11 167 2.79e-16 78.6
MS.gene39413.t1 AT3G10490 37.864 103 40 2 88 190 2 80 4.73e-15 75.9
MS.gene39413.t1 AT3G10490 37.864 103 40 2 88 190 2 80 4.73e-15 75.9
MS.gene39413.t1 AT2G18060 38.542 96 32 3 93 188 2 70 1.47e-14 73.6
MS.gene39413.t1 AT3G04430 35.714 140 76 5 21 148 6 143 1.19e-13 69.3
MS.gene39413.t1 AT1G28470 31.973 147 79 7 13 142 75 217 8.46e-13 68.6
MS.gene39413.t1 AT1G25580 32.075 159 89 7 13 158 56 208 2.01e-12 68.2
MS.gene39413.t1 AT5G56620 31.613 155 76 6 15 142 43 194 2.15e-12 68.2
MS.gene39413.t1 AT5G56620 31.613 155 76 6 15 142 43 194 2.75e-12 67.8
MS.gene39413.t1 AT4G29230 34.416 154 74 8 15 144 47 197 4.26e-12 67.4
MS.gene39413.t1 AT4G29230 34.416 154 74 8 15 144 48 198 4.39e-12 67.4
MS.gene39413.t1 AT5G56620 31.613 155 76 6 15 142 43 194 4.93e-12 67.0
MS.gene39413.t1 AT4G29230 34.416 154 74 8 15 144 48 198 9.96e-12 66.2
MS.gene39413.t1 AT4G28500 31.902 163 91 6 13 158 57 216 7.43e-11 62.8

Find 82 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAACTTCCGGACATAAAT+TGG 0.154420 4.2:-21767422 MS.gene39413:CDS
CAAAAGGAGTTAAAACTAAT+TGG 0.207995 4.2:-21768407 MS.gene39413:CDS
CCTAATAGGGCTGCTACTTC+TGG 0.215436 4.2:-21768531 MS.gene39413:CDS
TTTCATCAAAATTCAATTCT+TGG 0.231872 4.2:-21767477 MS.gene39413:CDS
CAAATGGAGCAAGGCCTAAT+AGG 0.244485 4.2:-21768545 MS.gene39413:CDS
GTTATAGGTAAAGCAAGTTT+TGG 0.260496 4.2:-21768612 MS.gene39413:intron
CTATTAGGCCTTGCTCCATT+TGG 0.269221 4.2:+21768546 None:intergenic
GAATTCTTCTTGTTATTGTT+TGG 0.278889 4.2:+21768291 None:intergenic
TGTTGCTCTTCTTGTATATT+CGG 0.279475 4.2:+21767889 None:intergenic
TAAATGCATCATCACAGTTT+TGG 0.311946 4.2:-21767635 MS.gene39413:CDS
CGTGCCAAGGCCACTCCTAA+TGG 0.327822 4.2:-21767859 MS.gene39413:CDS
TTCATCAAAATTCAATTCTT+GGG 0.336065 4.2:-21767476 MS.gene39413:CDS
GCATTTAGTGCACGTTTCAT+AGG 0.337891 4.2:+21767651 None:intergenic
TATTAGGCCTTGCTCCATTT+GGG 0.342599 4.2:+21768547 None:intergenic
TCTTCAAGCAAACGGTTTCA+TGG 0.349803 4.2:-21767585 MS.gene39413:CDS
CCAGAAGTAGCAGCCCTATT+AGG 0.356475 4.2:+21768531 None:intergenic
CCTGGTGGTAGGTGGGGCTG+TGG 0.362539 4.2:+21768922 None:intergenic
GATCATCATATTGATCCATT+AGG 0.370820 4.2:+21767844 None:intergenic
AATGATCACGGAATGCAAAA+TGG 0.381179 4.2:-21767723 MS.gene39413:CDS
AATTCAATTCTTGGGTCTGT+TGG 0.387343 4.2:-21767468 MS.gene39413:CDS
TTCTTCTTGTTATTGTTTGG+AGG 0.403734 4.2:+21768294 None:intergenic
TCTTCAAGAAGCACAAGTTA+TGG 0.409732 4.2:-21767786 MS.gene39413:CDS
CTTCATCTGTTGGGTGGAAT+CGG 0.411927 4.2:+21768896 None:intergenic
TTCCCATCAGATGTTAATAT+AGG 0.417975 4.2:+21768480 None:intergenic
TGATCCATTAGGAGTGGCCT+TGG 0.439702 4.2:+21767855 None:intergenic
TTTCATGGAGATCTTAATAG+TGG 0.440666 4.2:-21767570 MS.gene39413:CDS
GGGCTGCTACTTCTGGGTAT+TGG 0.442139 4.2:-21768524 MS.gene39413:CDS
ATCGGAACCCTGGTGGTAGG+TGG 0.443872 4.2:+21768914 None:intergenic
AATGATGACAATTTCTTCGA+TGG 0.445563 4.2:-21767756 MS.gene39413:CDS
AAATGGAGCAAGGCCTAATA+GGG 0.447510 4.2:-21768544 MS.gene39413:CDS
GCTTCTTGAAGATGAATGTT+TGG 0.449692 4.2:+21767797 None:intergenic
TCGGAACCCTGGTGGTAGGT+GGG 0.455346 4.2:+21768915 None:intergenic
AAGCCTATATTAACATCTGA+TGG 0.457224 4.2:-21768483 MS.gene39413:CDS
GAGATCAATTTCTGCTATGA+TGG 0.458317 4.2:+21768819 None:intergenic
AACTAGTTCCAATTTATGTC+CGG 0.458531 4.2:+21767414 None:intergenic
CTAATAGGGCTGCTACTTCT+GGG 0.460184 4.2:-21768530 MS.gene39413:CDS
TTCATACTTGGGAGTTCCCA+TGG 0.461026 4.2:+21768784 None:intergenic
GAGGCAACAATTTCAACTTC+CGG 0.462175 4.2:-21767433 MS.gene39413:CDS
TGGAATGAAACAGGGTCACC+AGG 0.466947 4.2:-21767615 MS.gene39413:CDS
CAACGAGTTCTTCATCTGTT+GGG 0.474906 4.2:+21768887 None:intergenic
CCACAGCCCCACCTACCACC+AGG 0.477173 4.2:-21768922 MS.gene39413:CDS
ATTTCTGCTATGATGGCTAC+TGG 0.480845 4.2:+21768826 None:intergenic
TCTGGGTATTGGAAAGCTAC+TGG 0.487868 4.2:-21768513 MS.gene39413:CDS
ATTGGATTATGCATGAGTAT+AGG 0.493789 4.2:-21768389 MS.gene39413:CDS
CATTTAGTGCACGTTTCATA+GGG 0.495376 4.2:+21767652 None:intergenic
GGTCATCTTCTTCAAGCAAA+CGG 0.495966 4.2:-21767593 MS.gene39413:CDS
TCTGATGGGAATCAGAAAGT+TGG 0.499516 4.2:-21768468 MS.gene39413:CDS
ATTCTTGGGTCTGTTGGAGA+TGG 0.501582 4.2:-21767462 MS.gene39413:CDS
CGGAACCCTGGTGGTAGGTG+GGG 0.523284 4.2:+21768916 None:intergenic
ACAACGAGTTCTTCATCTGT+TGG 0.524281 4.2:+21768886 None:intergenic
ATCTCTACAAATTCGACCCA+TGG 0.531070 4.2:-21768801 MS.gene39413:CDS
AGGGATAGAAAATACCCAAA+TGG 0.534980 4.2:-21768561 MS.gene39413:CDS
TATGGAGGGAAGCCACCAAA+AGG 0.535327 4.2:-21768423 MS.gene39413:CDS
TGATGAAAAGTTGTGTTTGG+TGG 0.540337 4.2:+21767492 None:intergenic
GCTATGATGGCTACTGGAAG+AGG 0.544027 4.2:+21768832 None:intergenic
AAGTTGTGTTTGGTGGAAGC+TGG 0.544443 4.2:+21767499 None:intergenic
TGTGCATATACATACCCTTA+GGG 0.545490 4.2:+21768269 None:intergenic
GGTTGTGACACAAACTCAAA+GGG 0.556107 4.2:-21767702 MS.gene39413:CDS
TTGTTTGGAGGATGATCAGA+AGG 0.562065 4.2:+21768306 None:intergenic
GGAATCGGAACCCTGGTGGT+AGG 0.568875 4.2:+21768911 None:intergenic
GGATGATCAGAAGGCAGAGG+AGG 0.572911 4.2:+21768315 None:intergenic
GGAGGATGATCAGAAGGCAG+AGG 0.572927 4.2:+21768312 None:intergenic
ATAACAAGAAGAATTCCCTA+AGG 0.573041 4.2:-21768284 MS.gene39413:CDS
TGGTTGTGACACAAACTCAA+AGG 0.577669 4.2:-21767703 MS.gene39413:CDS
GCAACAGTAGCACCGTGCCA+AGG 0.582247 4.2:-21767872 MS.gene39413:CDS
TCATACTTGGGAGTTCCCAT+GGG 0.586431 4.2:+21768785 None:intergenic
AGCCTATATTAACATCTGAT+GGG 0.592875 4.2:-21768482 MS.gene39413:CDS
CGAGTTCTTCATCTGTTGGG+TGG 0.593385 4.2:+21768890 None:intergenic
CATTAGGAGTGGCCTTGGCA+CGG 0.596306 4.2:+21767860 None:intergenic
GTTGGGTGGAATCGGAACCC+TGG 0.600934 4.2:+21768904 None:intergenic
TGGAATAAGTAGCAATGCTG+AGG 0.609239 4.2:-21767550 MS.gene39413:CDS
GAAAATACCCAAATGGAGCA+AGG 0.627854 4.2:-21768554 MS.gene39413:CDS
GGAATCTTAGCAAATGATCA+CGG 0.629624 4.2:-21767735 MS.gene39413:CDS
CACAGCCCCACCTACCACCA+GGG 0.637122 4.2:-21768921 MS.gene39413:CDS
TAACAAGAAGAATTCCCTAA+GGG 0.639219 4.2:-21768283 MS.gene39413:intron
TCTCTACAAATTCGACCCAT+GGG 0.642051 4.2:-21768800 MS.gene39413:CDS
CTGTTGGAGATGGTGTAATG+AGG 0.645707 4.2:-21767452 MS.gene39413:CDS
TCATATTGATCCATTAGGAG+TGG 0.647192 4.2:+21767849 None:intergenic
GGAATGAAACAGGGTCACCA+GGG 0.654300 4.2:-21767614 MS.gene39413:CDS
GGGTGGAATCGGAACCCTGG+TGG 0.662428 4.2:+21768907 None:intergenic
TTGCTTGAAGAAGATGACCC+TGG 0.699438 4.2:+21767597 None:intergenic
TGTGACACAAACTCAAAGGG+TGG 0.762560 4.2:-21767699 MS.gene39413:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCATGAATTAATAAATAAT+TGG - chr4.2:21768150-21768169 MS.gene39413:intron 10.0%
!!! TTAACATTTTTTTATTGTAT+TGG - chr4.2:21768428-21768447 MS.gene39413:CDS 10.0%
!!! TTTTCTTTAATATAAAAACA+TGG + chr4.2:21768407-21768426 None:intergenic 10.0%
!! AATTAATAAATAATTGGACA+TGG - chr4.2:21768156-21768175 MS.gene39413:intron 15.0%
!!! TTTTGTTTGTTTTTTGTTAT+AGG - chr4.2:21767741-21767760 MS.gene39413:CDS 15.0%
!!! TTTTTTTATTGTATTGGTTT+TGG - chr4.2:21768434-21768453 MS.gene39413:CDS 15.0%
!! AAAAAAAACAGAGAAAAAAC+AGG + chr4.2:21767724-21767743 None:intergenic 20.0%
!! AAAATTTCTTATGCAAAACA+AGG + chr4.2:21767675-21767694 None:intergenic 20.0%
!! TTCATCAAAATTCAATTCTT+GGG - chr4.2:21768892-21768911 MS.gene39413:CDS 20.0%
!! TTTCATCAAAATTCAATTCT+TGG - chr4.2:21768891-21768910 MS.gene39413:CDS 20.0%
!!! ATTTTGTTAATCATATTCAC+AGG - chr4.2:21768239-21768258 MS.gene39413:intron 20.0%
! AAACAAGGAACATAAAATCT+AGG + chr4.2:21767660-21767679 None:intergenic 25.0%
! AAATGGATGAAAAGATGAAA+TGG + chr4.2:21767623-21767642 None:intergenic 25.0%
! AATGGATGAAAAGATGAAAT+GGG + chr4.2:21767622-21767641 None:intergenic 25.0%
! CAAAAGGAGTTAAAACTAAT+TGG - chr4.2:21767961-21767980 MS.gene39413:intron 25.0%
! GAAAAAACAGGACAATATTT+CGG + chr4.2:21767712-21767731 None:intergenic 25.0%
! TGTGAAAAAGTTTCATACTT+GGG + chr4.2:21767598-21767617 None:intergenic 25.0%
!! TTATAGGTAAAGCAAGTTTT+GGG - chr4.2:21767757-21767776 MS.gene39413:CDS 25.0%
!! TTTTGATGAAAAGTTGTGTT+TGG + chr4.2:21768882-21768901 None:intergenic 25.0%
!!! AAGAAAGCACTTGTTTTTTA+TGG - chr4.2:21767927-21767946 MS.gene39413:intron 25.0%
!!! CAATTAGTTTTAACTCCTTT+TGG + chr4.2:21767963-21767982 None:intergenic 25.0%
!!! GAATTCTTCTTGTTATTGTT+TGG + chr4.2:21768080-21768099 None:intergenic 25.0%
AAGATCAGACCATTCAAAAA+AGG + chr4.2:21768210-21768229 None:intergenic 30.0%
AAGCCTATATTAACATCTGA+TGG - chr4.2:21767885-21767904 MS.gene39413:CDS 30.0%
AATGATGACAATTTCTTCGA+TGG - chr4.2:21768612-21768631 MS.gene39413:intron 30.0%
ACCAGTGTAATTAAATGTGT+TGG - chr4.2:21768310-21768329 MS.gene39413:CDS 30.0%
AGCCTATATTAACATCTGAT+GGG - chr4.2:21767886-21767905 MS.gene39413:CDS 30.0%
ATAACAAGAAGAATTCCCTA+AGG - chr4.2:21768084-21768103 MS.gene39413:intron 30.0%
ATATTCACAGGTATGAAACA+CGG - chr4.2:21768251-21768270 MS.gene39413:intron 30.0%
ATGGATGAAAAGATGAAATG+GGG + chr4.2:21767621-21767640 None:intergenic 30.0%
ATTCATGAAACAAATGCACA+TGG + chr4.2:21768139-21768158 None:intergenic 30.0%
ATTGGATTATGCATGAGTAT+AGG - chr4.2:21767979-21767998 MS.gene39413:intron 30.0%
CAGTGTAATTAAATGTGTTG+GGG - chr4.2:21768312-21768331 MS.gene39413:CDS 30.0%
CCAGTGTAATTAAATGTGTT+GGG - chr4.2:21768311-21768330 MS.gene39413:CDS 30.0%
GATCATCATATTGATCCATT+AGG + chr4.2:21768527-21768546 None:intergenic 30.0%
GTGTGAAAAAGTTTCATACT+TGG + chr4.2:21767599-21767618 None:intergenic 30.0%
TAACAAGAAGAATTCCCTAA+GGG - chr4.2:21768085-21768104 MS.gene39413:intron 30.0%
TGTTGCTCTTCTTGTATATT+CGG + chr4.2:21768482-21768501 None:intergenic 30.0%
TTCCCATCAGATGTTAATAT+AGG + chr4.2:21767891-21767910 None:intergenic 30.0%
TTTCATGGAGATCTTAATAG+TGG - chr4.2:21768798-21768817 MS.gene39413:CDS 30.0%
! GAACATAAAATCTAGGATGT+GGG + chr4.2:21767653-21767672 None:intergenic 30.0%
! GTTATAGGTAAAGCAAGTTT+TGG - chr4.2:21767756-21767775 MS.gene39413:CDS 30.0%
! TAAATGCATCATCACAGTTT+TGG - chr4.2:21768733-21768752 MS.gene39413:intron 30.0%
! TATAGGTAAAGCAAGTTTTG+GGG - chr4.2:21767758-21767777 MS.gene39413:CDS 30.0%
!! TTCTTCTTGTTATTGTTTGG+AGG + chr4.2:21768077-21768096 None:intergenic 30.0%
!!! AAAGCACTTGTTTTTTATGG+AGG - chr4.2:21767930-21767949 MS.gene39413:intron 30.0%
!!! AAGCACTTGTTTTTTATGGA+GGG - chr4.2:21767931-21767950 MS.gene39413:intron 30.0%
!!! GGAGTTTTGTTGCATATTAT+AGG + chr4.2:21768553-21768572 None:intergenic 30.0%
!!! TTAGTTTTAACTCCTTTTGG+TGG + chr4.2:21767960-21767979 None:intergenic 30.0%
AATGATCACGGAATGCAAAA+TGG - chr4.2:21768645-21768664 MS.gene39413:intron 35.0%
AATTCAATTCTTGGGTCTGT+TGG - chr4.2:21768900-21768919 MS.gene39413:CDS 35.0%
AGGGATAGAAAATACCCAAA+TGG - chr4.2:21767807-21767826 MS.gene39413:CDS 35.0%
CATTTAGTGCACGTTTCATA+GGG + chr4.2:21768719-21768738 None:intergenic 35.0%
CCCAACACATTTAATTACAC+TGG + chr4.2:21768314-21768333 None:intergenic 35.0%
GAGATCAATTTCTGCTATGA+TGG + chr4.2:21767552-21767571 None:intergenic 35.0%
GATGACTATGCAATGAAACA+CGG + chr4.2:21768378-21768397 None:intergenic 35.0%
GCTTCTTGAAGATGAATGTT+TGG + chr4.2:21768574-21768593 None:intergenic 35.0%
GGAATCTTAGCAAATGATCA+CGG - chr4.2:21768633-21768652 MS.gene39413:intron 35.0%
TCATATTGATCCATTAGGAG+TGG + chr4.2:21768522-21768541 None:intergenic 35.0%
TGATGAAAAGTTGTGTTTGG+TGG + chr4.2:21768879-21768898 None:intergenic 35.0%
TGTGCATATACATACCCTTA+GGG + chr4.2:21768102-21768121 None:intergenic 35.0%
TTCAACTTCCGGACATAAAT+TGG - chr4.2:21768946-21768965 MS.gene39413:CDS 35.0%
! GGAACATAAAATCTAGGATG+TGG + chr4.2:21767654-21767673 None:intergenic 35.0%
! TCTTCAAGAAGCACAAGTTA+TGG - chr4.2:21768582-21768601 MS.gene39413:CDS 35.0%
! TTGGGTATTTTCTATCCCTT+GGG + chr4.2:21767806-21767825 None:intergenic 35.0%
! TTTGGGTATTTTCTATCCCT+TGG + chr4.2:21767807-21767826 None:intergenic 35.0%
!!! CACAGTTTTGGAATGAAACA+GGG - chr4.2:21768745-21768764 MS.gene39413:intron 35.0%
!!! CTCTCTGTTCCTTTTTTGAA+TGG - chr4.2:21768198-21768217 MS.gene39413:intron 35.0%
!!! TCACAGTTTTGGAATGAAAC+AGG - chr4.2:21768744-21768763 MS.gene39413:intron 35.0%
AAATGGAGCAAGGCCTAATA+GGG - chr4.2:21767824-21767843 MS.gene39413:CDS 40.0%
ACAACGAGTTCTTCATCTGT+TGG + chr4.2:21767485-21767504 None:intergenic 40.0%
AGGATGTGGGTTTGAGTAAA+TGG + chr4.2:21767640-21767659 None:intergenic 40.0%
ATCTCTACAAATTCGACCCA+TGG - chr4.2:21767567-21767586 MS.gene39413:CDS 40.0%
ATTTCTGCTATGATGGCTAC+TGG + chr4.2:21767545-21767564 None:intergenic 40.0%
CAACGAGTTCTTCATCTGTT+GGG + chr4.2:21767484-21767503 None:intergenic 40.0%
GAAAATACCCAAATGGAGCA+AGG - chr4.2:21767814-21767833 MS.gene39413:CDS 40.0%
GAGGCAACAATTTCAACTTC+CGG - chr4.2:21768935-21768954 MS.gene39413:CDS 40.0%
GCATTTAGTGCACGTTTCAT+AGG + chr4.2:21768720-21768739 None:intergenic 40.0%
GGTCATCTTCTTCAAGCAAA+CGG - chr4.2:21768775-21768794 MS.gene39413:intron 40.0%
GGTTGTGACACAAACTCAAA+GGG - chr4.2:21768666-21768685 MS.gene39413:intron 40.0%
GTGTGCATATACATACCCTT+AGG + chr4.2:21768103-21768122 None:intergenic 40.0%
TATTAGGCCTTGCTCCATTT+GGG + chr4.2:21767824-21767843 None:intergenic 40.0%
TCTCTACAAATTCGACCCAT+GGG - chr4.2:21767568-21767587 MS.gene39413:CDS 40.0%
TCTGATGGGAATCAGAAAGT+TGG - chr4.2:21767900-21767919 MS.gene39413:CDS 40.0%
TCTTCAAGCAAACGGTTTCA+TGG - chr4.2:21768783-21768802 MS.gene39413:intron 40.0%
TGGAATAAGTAGCAATGCTG+AGG - chr4.2:21768818-21768837 MS.gene39413:CDS 40.0%
TGGTTGTGACACAAACTCAA+AGG - chr4.2:21768665-21768684 MS.gene39413:intron 40.0%
TTGTTTGGAGGATGATCAGA+AGG + chr4.2:21768065-21768084 None:intergenic 40.0%
! CAGAAGCAGCTTTTCTTTTG+AGG + chr4.2:21767514-21767533 None:intergenic 40.0%
!!! GGTTTTGGAGCTTGATGATT+GGG - chr4.2:21768449-21768468 MS.gene39413:CDS 40.0%
!!! TGGTTTTGGAGCTTGATGAT+TGG - chr4.2:21768448-21768467 MS.gene39413:CDS 40.0%
ATTCTTGGGTCTGTTGGAGA+TGG - chr4.2:21768906-21768925 MS.gene39413:CDS 45.0%
CAAATGGAGCAAGGCCTAAT+AGG - chr4.2:21767823-21767842 MS.gene39413:CDS 45.0%
CTATTAGGCCTTGCTCCATT+TGG + chr4.2:21767825-21767844 None:intergenic 45.0%
CTGTTGGAGATGGTGTAATG+AGG - chr4.2:21768916-21768935 MS.gene39413:CDS 45.0%
CTTCATCTGTTGGGTGGAAT+CGG + chr4.2:21767475-21767494 None:intergenic 45.0%
GGACACCTCTAATATGAGGA+GGG - chr4.2:21768351-21768370 MS.gene39413:CDS 45.0%
TAAATGTGTTGGGGTCGTGT+CGG - chr4.2:21768321-21768340 MS.gene39413:CDS 45.0%
TCATACTTGGGAGTTCCCAT+GGG + chr4.2:21767586-21767605 None:intergenic 45.0%
TGTGACACAAACTCAAAGGG+TGG - chr4.2:21768669-21768688 MS.gene39413:intron 45.0%
TTCATACTTGGGAGTTCCCA+TGG + chr4.2:21767587-21767606 None:intergenic 45.0%
TTGCTTGAAGAAGATGACCC+TGG + chr4.2:21768774-21768793 None:intergenic 45.0%
! AAGTTGTGTTTGGTGGAAGC+TGG + chr4.2:21768872-21768891 None:intergenic 45.0%
! CTAATAGGGCTGCTACTTCT+GGG - chr4.2:21767838-21767857 MS.gene39413:CDS 45.0%
!! TCTGGGTATTGGAAAGCTAC+TGG - chr4.2:21767855-21767874 MS.gene39413:CDS 45.0%
!!! AGTGGTACTTTTTCAGCCCA+AGG - chr4.2:21767787-21767806 MS.gene39413:CDS 45.0%
!!! CAAGTTTTGGGGAACAAGAG+TGG - chr4.2:21767769-21767788 MS.gene39413:CDS 45.0%
!!! GTGGTACTTTTTCAGCCCAA+GGG - chr4.2:21767788-21767807 MS.gene39413:CDS 45.0%
ACGGACCCTCCTCATATTAG+AGG + chr4.2:21768359-21768378 None:intergenic 50.0%
CACGGGACACCTCTAATATG+AGG - chr4.2:21768347-21768366 MS.gene39413:CDS 50.0%
CCAGAAGTAGCAGCCCTATT+AGG + chr4.2:21767840-21767859 None:intergenic 50.0%
CGAGTTCTTCATCTGTTGGG+TGG + chr4.2:21767481-21767500 None:intergenic 50.0%
GCTATGATGGCTACTGGAAG+AGG + chr4.2:21767539-21767558 None:intergenic 50.0%
GGAATGAAACAGGGTCACCA+GGG - chr4.2:21768754-21768773 MS.gene39413:intron 50.0%
GGGACACCTCTAATATGAGG+AGG - chr4.2:21768350-21768369 MS.gene39413:CDS 50.0%
TATGGAGGGAAGCCACCAAA+AGG - chr4.2:21767945-21767964 MS.gene39413:intron 50.0%
TGATCCATTAGGAGTGGCCT+TGG + chr4.2:21768516-21768535 None:intergenic 50.0%
TGGAATGAAACAGGGTCACC+AGG - chr4.2:21768753-21768772 MS.gene39413:intron 50.0%
! CCTAATAGGGCTGCTACTTC+TGG - chr4.2:21767837-21767856 MS.gene39413:CDS 50.0%
GGAGGATGATCAGAAGGCAG+AGG + chr4.2:21768059-21768078 None:intergenic 55.0%
GGATGATCAGAAGGCAGAGG+AGG + chr4.2:21768056-21768075 None:intergenic 55.0%
! CATTAGGAGTGGCCTTGGCA+CGG + chr4.2:21768511-21768530 None:intergenic 55.0%
! GGGCTGCTACTTCTGGGTAT+TGG - chr4.2:21767844-21767863 MS.gene39413:CDS 55.0%
ATCGGAACCCTGGTGGTAGG+TGG + chr4.2:21767457-21767476 None:intergenic 60.0%
CGTGCCAAGGCCACTCCTAA+TGG - chr4.2:21768509-21768528 MS.gene39413:CDS 60.0%
GCAACAGTAGCACCGTGCCA+AGG - chr4.2:21768496-21768515 MS.gene39413:CDS 60.0%
GGAATCGGAACCCTGGTGGT+AGG + chr4.2:21767460-21767479 None:intergenic 60.0%
GTTGGGTGGAATCGGAACCC+TGG + chr4.2:21767467-21767486 None:intergenic 60.0%
TCGGAACCCTGGTGGTAGGT+GGG + chr4.2:21767456-21767475 None:intergenic 60.0%
CACAGCCCCACCTACCACCA+GGG - chr4.2:21767447-21767466 MS.gene39413:CDS 65.0%
CGGAACCCTGGTGGTAGGTG+GGG + chr4.2:21767455-21767474 None:intergenic 65.0%
GGGTGGAATCGGAACCCTGG+TGG + chr4.2:21767464-21767483 None:intergenic 65.0%
! TTGGGGTCGTGTCGGCGACA+CGG - chr4.2:21768329-21768348 MS.gene39413:CDS 65.0%
CCACAGCCCCACCTACCACC+AGG - chr4.2:21767446-21767465 MS.gene39413:CDS 70.0%
CCTGGTGGTAGGTGGGGCTG+TGG + chr4.2:21767449-21767468 None:intergenic 70.0%
! TGGGGTCGTGTCGGCGACAC+GGG - chr4.2:21768330-21768349 MS.gene39413:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 21767416 21768974 21767416 ID=MS.gene39413
chr4.2 mRNA 21767416 21768974 21767416 ID=MS.gene39413.t1;Parent=MS.gene39413
chr4.2 exon 21768791 21768974 21768791 ID=MS.gene39413.t1.exon1;Parent=MS.gene39413.t1
chr4.2 CDS 21768791 21768974 21768791 ID=cds.MS.gene39413.t1;Parent=MS.gene39413.t1
chr4.2 exon 21768284 21768627 21768284 ID=MS.gene39413.t1.exon2;Parent=MS.gene39413.t1
chr4.2 CDS 21768284 21768627 21768284 ID=cds.MS.gene39413.t1;Parent=MS.gene39413.t1
chr4.2 exon 21767416 21767931 21767416 ID=MS.gene39413.t1.exon3;Parent=MS.gene39413.t1
chr4.2 CDS 21767416 21767931 21767416 ID=cds.MS.gene39413.t1;Parent=MS.gene39413.t1
Gene Sequence

>MS.gene39413

ATGGACAGCACAGATTCATCATCTTGCTCTCCACAGCCCCACCTACCACCAGGGTTCCGATTCCACCCAACAGATGAAGAACTCGTTGTTCACTACCTCAAAAGAAAAGCTGCTTCTGCACCTCTTCCAGTAGCCATCATAGCAGAAATTGATCTCTACAAATTCGACCCATGGGAACTCCCAAGTATGAAACTTTTTCACACCCCATTTCATCTTTTCATCCATTTACTCAAACCCACATCCTAGATTTTATGTTCCTTGTTTTGCATAAGAAATTTTGAACATGTTTTAATCCGAAATATTGTCCTGTTTTTTCTCTGTTTTTTTTTGTTTGTTTTTTGTTATAGGTAAAGCAAGTTTTGGGGAACAAGAGTGGTACTTTTTCAGCCCAAGGGATAGAAAATACCCAAATGGAGCAAGGCCTAATAGGGCTGCTACTTCTGGGTATTGGAAAGCTACTGGAACTGATAAGCCTATATTAACATCTGATGGGAATCAGAAAGTTGGAGTTAAGAAAGCACTTGTTTTTTATGGAGGGAAGCCACCAAAAGGAGTTAAAACTAATTGGATTATGCATGAGTATAGGCTCATCACTGATCATAATAATCATAATTCTTATAATGCAACTTCAAAAACTCCTCCTCTGCCTTCTGATCATCCTCCAAACAATAACAAGAAGAATTCCCTAAGGGTATGTATATGCACACACATATTTGCATGCCATGTGCATTTGTTTCATGAATTAATAAATAATTGGACATGGACACTTAATTATATCTTTTCTCTCTGTTCCTTTTTTGAATGGTCTGATCTTTAAAGTATAATTTTGTTAATCATATTCACAGGTATGAAACACGGATACAGACACGCTGACACAACTAATAATTTTAGAAAACCAGTGTAATTAAATGTGTTGGGGTCGTGTCGGCGACACGGGACACCTCTAATATGAGGAGGGTCCGTGTTTCATTGCATAGTCATCATTAAACCATGTTTTTATATTAAAGAAAAATTAACATTTTTTTATTGTATTGGTTTTGGAGCTTGATGATTGGGTTTTGTGCCGAATATACAAGAAGAGCAACAGTAGCACCGTGCCAAGGCCACTCCTAATGGATCAATATGATGATCAAACCTATAATATGCAACAAAACTCCAAACATTCATCTTCAAGAAGCACAAGTTATGGACTTGAAAATGATGACAATTTCTTCGATGGAATCTTAGCAAATGATCACGGAATGCAAAATGGTTGTGACACAAACTCAAAGGGTGGTGACAATAATAATGAAACATTATTCCCTATGAAACGTGCACTAAATGCATCATCACAGTTTTGGAATGAAACAGGGTCACCAGGGTCATCTTCTTCAAGCAAACGGTTTCATGGAGATCTTAATAGTGGAATAAGTAGCAATGCTGAGGAAAATAATTCATTTGTTTCACTGCTTAGCCAGCTTCCACCAAACACAACTTTTCATCAAAATTCAATTCTTGGGTCTGTTGGAGATGGTGTAATGAGGCAACAATTTCAACTTCCGGACATAAATTGGAACTAG
Protein sequence

>MS.gene39413.t1

MDSTDSSSCSPQPHLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEIDLYKFDPWELPSKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSDGNQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLITDHNNHNSYNATSKTPPLPSDHPPNNNKKNSLRLDDWVLCRIYKKSNSSTVPRPLLMDQYDDQTYNMQQNSKHSSSRSTSYGLENDDNFFDGILANDHGMQNGCDTNSKGGDNNNETLFPMKRALNASSQFWNETGSPGSSSSSKRFHGDLNSGISSNAEENNSFVSLLSQLPPNTTFHQNSILGSVGDGVMRQQFQLPDINWN