AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39419

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39419.t1 MTR_4g089095 92.617 298 12 3 1 288 1 298 0.0 561
MS.gene39419.t1 MTR_4g089095 92.045 264 11 3 35 288 1 264 1.36e-179 495
MS.gene39419.t1 MTR_2g013370 57.377 305 82 14 1 288 1 274 1.27e-94 280
MS.gene39419.t1 MTR_4g088580 55.172 116 45 2 17 125 16 131 7.15e-31 119
MS.gene39419.t1 MTR_2g096740 39.234 209 100 8 50 254 62 247 3.02e-30 115
MS.gene39419.t1 MTR_2g096740 39.713 209 99 9 50 254 77 262 3.50e-30 115
MS.gene39419.t1 MTR_3g091820 67.105 76 20 2 29 103 26 97 4.34e-29 112
MS.gene39419.t1 MTR_8g479350 59.259 81 32 1 48 127 66 146 6.14e-29 113
MS.gene39419.t1 MTR_8g079060 64.103 78 26 2 46 121 25 102 3.28e-28 108
MS.gene39419.t1 MTR_2g093220 68.571 70 20 2 36 103 25 94 2.39e-27 107
MS.gene39419.t1 MTR_8g027295 55.422 83 36 1 37 118 11 93 2.43e-27 107
MS.gene39419.t1 MTR_3g090430 55.556 99 42 2 9 105 9 107 1.33e-26 106
MS.gene39419.t1 MTR_2g014170 85.714 49 7 0 50 98 45 93 1.68e-26 105
MS.gene39419.t1 MTR_8g068210 64.179 67 23 1 45 110 27 93 1.89e-26 106
MS.gene39419.t1 MTR_4g022370 54.639 97 34 3 50 136 82 178 3.01e-26 106
MS.gene39419.t1 MTR_7g024670 80.357 56 9 1 52 105 79 134 4.15e-26 106
MS.gene39419.t1 MTR_8g015840 74.545 55 14 0 46 100 16 70 4.24e-26 102
MS.gene39419.t1 MTR_4g063780 58.228 79 31 1 50 126 75 153 5.07e-26 105
MS.gene39419.t1 MTR_7g059400 81.132 53 9 1 52 103 78 130 5.64e-26 105
MS.gene39419.t1 MTR_4g461080 69.697 66 19 1 37 101 16 81 6.50e-26 103
MS.gene39419.t1 MTR_1g056810 51.087 92 44 1 51 141 13 104 1.32e-25 103
MS.gene39419.t1 MTR_4g109980 62.667 75 28 0 48 122 38 112 2.19e-25 103
MS.gene39419.t1 MTR_1g077600 60.606 66 25 1 39 103 32 97 3.38e-25 101
MS.gene39419.t1 MTR_1g077600 60.606 66 25 1 39 103 32 97 3.38e-25 102
MS.gene39419.t1 MTR_2g059540 81.633 49 9 0 50 98 31 79 4.54e-25 99.8
MS.gene39419.t1 MTR_3g077750 48.624 109 45 4 1 98 1 109 1.48e-24 101
MS.gene39419.t1 MTR_5g031440 72.549 51 14 0 48 98 41 91 5.92e-24 99.8
MS.gene39419.t1 MTR_3g435480 58.462 65 27 0 39 103 125 189 3.47e-23 99.0
MS.gene39419.t1 MTR_2g014060 61.905 63 24 0 36 98 11 73 8.57e-23 96.3
MS.gene39419.t1 MTR_2g016030 67.308 52 17 0 52 103 49 100 8.83e-23 92.4
MS.gene39419.t1 MTR_7g010950 69.231 52 16 0 52 103 137 188 1.12e-22 97.8
MS.gene39419.t1 MTR_6g027450 47.475 99 36 2 7 104 61 144 1.23e-22 95.9
MS.gene39419.t1 MTR_4g082060 70.370 54 15 1 52 104 124 177 1.40e-22 97.1
MS.gene39419.t1 MTR_5g041400 40.000 115 62 2 38 145 105 219 1.42e-22 96.3
MS.gene39419.t1 MTR_6g012450 44.681 94 47 1 50 138 136 229 1.85e-22 97.1
MS.gene39419.t1 MTR_7g086780 56.164 73 31 1 50 121 99 171 3.19e-22 95.9
MS.gene39419.t1 MTR_6g027460 69.643 56 16 1 50 104 96 151 3.64e-22 95.1
MS.gene39419.t1 MTR_5g041420 53.030 66 31 0 39 104 127 192 7.18e-22 93.6
MS.gene39419.t1 MTR_8g044220 65.455 55 18 1 50 103 118 172 1.38e-21 94.4
MS.gene39419.t1 MTR_5g041380 42.593 108 59 2 38 143 113 219 1.61e-21 93.2
MS.gene39419.t1 MTR_5g041530 53.030 66 31 0 39 104 129 194 3.38e-20 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39419.t1 AT1G28310 81.356 59 10 1 50 107 27 85 1.08e-29 114
MS.gene39419.t1 AT3G55370 41.081 185 90 6 50 227 76 248 1.69e-29 114
MS.gene39419.t1 AT1G28310 81.356 59 10 1 50 107 51 109 1.77e-29 114
MS.gene39419.t1 AT3G55370 41.081 185 90 6 50 227 76 248 2.67e-29 114
MS.gene39419.t1 AT3G55370 41.081 185 90 6 50 227 121 293 3.22e-29 114
MS.gene39419.t1 AT1G51700 60.000 75 30 0 38 112 21 95 2.39e-28 108
MS.gene39419.t1 AT5G60850 69.863 73 21 1 50 121 51 123 2.78e-28 110
MS.gene39419.t1 AT5G66940 53.125 96 43 2 23 118 6 99 6.79e-28 107
MS.gene39419.t1 AT5G60200 80.000 55 10 1 50 103 55 109 3.04e-27 107
MS.gene39419.t1 AT5G65590 53.933 89 34 2 28 109 13 101 3.19e-27 108
MS.gene39419.t1 AT3G50410 72.581 62 16 1 46 106 26 87 4.14e-27 106
MS.gene39419.t1 AT1G07640 48.246 114 43 3 8 105 21 134 5.99e-27 107
MS.gene39419.t1 AT1G07640 48.246 114 43 3 8 105 29 142 7.53e-27 107
MS.gene39419.t1 AT2G28810 31.698 265 145 8 36 275 63 316 9.91e-27 107
MS.gene39419.t1 AT2G28810 31.698 265 145 8 36 275 80 333 1.14e-26 107
MS.gene39419.t1 AT1G07640 60.811 74 27 1 34 105 5 78 1.26e-26 105
MS.gene39419.t1 AT3G21270 73.684 57 15 0 50 106 29 85 2.40e-26 103
MS.gene39419.t1 AT2G28510 69.841 63 18 1 42 103 40 102 2.58e-26 105
MS.gene39419.t1 AT3G61850 70.492 61 17 1 48 107 60 120 4.23e-26 104
MS.gene39419.t1 AT3G61850 70.492 61 17 1 48 107 60 120 4.23e-26 104
MS.gene39419.t1 AT3G61850 70.492 61 17 1 48 107 72 132 5.06e-26 104
MS.gene39419.t1 AT3G45610 61.333 75 21 2 48 121 38 105 6.36e-26 103
MS.gene39419.t1 AT3G61850 70.492 61 17 1 48 107 60 120 7.10e-26 104
MS.gene39419.t1 AT3G61850 70.492 61 17 1 48 107 72 132 8.38e-26 104
MS.gene39419.t1 AT2G37590 57.534 73 30 1 34 105 73 145 1.38e-25 103
MS.gene39419.t1 AT4G24060 62.121 66 24 1 39 103 42 107 2.84e-25 103
MS.gene39419.t1 AT5G02460 76.364 55 12 1 50 103 95 149 4.49e-25 103
MS.gene39419.t1 AT4G38000 71.698 53 15 0 50 102 41 93 1.37e-24 99.8
MS.gene39419.t1 AT5G62430 47.872 94 46 1 19 109 20 113 1.64e-24 100
MS.gene39419.t1 AT4G21050 59.701 67 26 1 52 117 26 92 4.51e-24 97.4
MS.gene39419.t1 AT3G52440 72.727 55 14 1 52 105 27 81 4.84e-24 98.2
MS.gene39419.t1 AT2G46590 76.000 50 12 0 48 97 66 115 5.42e-24 100
MS.gene39419.t1 AT1G47655 73.077 52 14 0 47 98 26 77 5.43e-24 97.1
MS.gene39419.t1 AT2G46590 76.000 50 12 0 48 97 78 127 5.90e-24 100
MS.gene39419.t1 AT3G52440 72.727 55 14 1 52 105 46 100 7.53e-24 98.2
MS.gene39419.t1 AT4G00940 67.213 61 19 1 48 107 66 126 8.56e-24 98.6
MS.gene39419.t1 AT4G00940 67.213 61 19 1 48 107 66 126 8.56e-24 98.6
MS.gene39419.t1 AT4G00940 67.213 61 19 1 48 107 66 126 8.56e-24 98.6
MS.gene39419.t1 AT1G21340 69.643 56 16 1 52 106 40 95 9.34e-24 97.8
MS.gene39419.t1 AT1G69570 41.270 126 63 3 52 167 134 258 2.31e-23 99.0
MS.gene39419.t1 AT3G47500 70.370 54 16 0 50 103 110 163 2.33e-23 99.4
MS.gene39419.t1 AT1G64620 60.000 60 24 0 39 98 38 97 5.33e-23 97.4
MS.gene39419.t1 AT5G39660 58.462 65 27 0 39 103 127 191 6.16e-23 98.2
MS.gene39419.t1 AT5G39660 58.462 65 27 0 39 103 127 191 6.16e-23 98.2
MS.gene39419.t1 AT5G39660 58.462 65 27 0 39 103 127 191 6.16e-23 98.2
MS.gene39419.t1 AT1G29160 67.308 52 17 0 52 103 64 115 1.12e-22 92.4
MS.gene39419.t1 AT2G34140 64.815 54 19 0 50 103 58 111 1.26e-22 92.4
MS.gene39419.t1 AT5G62940 78.723 47 10 0 52 98 75 121 1.28e-22 96.7
MS.gene39419.t1 AT1G26790 66.667 54 18 0 50 103 111 164 1.95e-22 95.9
MS.gene39419.t1 AT4G21040 61.667 60 21 1 52 109 27 86 1.09e-21 91.3
MS.gene39419.t1 AT4G21080 54.412 68 29 1 52 117 27 94 7.66e-21 89.4
MS.gene39419.t1 AT4G21030 60.870 46 18 0 52 97 23 68 4.09e-13 67.0

Find 57 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTTGTGCTTGGAATTAT+TGG 0.149992 4.2:+21869645 None:intergenic
TCTTCCAATGTTTATTACTA+TGG 0.226715 4.2:-21869693 MS.gene39419:CDS
CTTATTAGAATCTCAAGATT+TGG 0.267364 4.2:-21870300 MS.gene39419:CDS
AAAGTTCAAAGTATTGGAAT+TGG 0.333779 4.2:-21869584 MS.gene39419:CDS
CAAATCTTGAGATTCTAATA+AGG 0.337572 4.2:+21870301 None:intergenic
TTGGGAAGACATTGATTCAT+TGG 0.357990 4.2:-21869565 MS.gene39419:CDS
ATCTCCCATGGCTTTGTGCT+TGG 0.363966 4.2:+21869636 None:intergenic
GTTGGTAATGGTAATGTTAA+TGG 0.368454 4.2:-21869819 MS.gene39419:CDS
CTCATTAGATGATGAGGCTT+TGG 0.369809 4.2:+21870272 None:intergenic
TTATCAGAAAACAAAGGTTT+TGG 0.373479 4.2:-21869843 MS.gene39419:CDS
TTTCTAGCAGTGGACTTGAT+TGG 0.385715 4.2:-21870331 MS.gene39419:CDS
TTCTTTCTGCCACCACCAAC+AGG 0.404107 4.2:+21870077 None:intergenic
GCTATTCATATTTGTAATTG+AGG 0.405425 4.2:+21869983 None:intergenic
TGATCTAAAGAATCCGTATT+GGG 0.417535 4.2:-21869535 MS.gene39419:CDS
AAGTTCAAAGTATTGGAATT+GGG 0.421160 4.2:-21869583 MS.gene39419:CDS
AAAAGAGCTTGAGGTTGAAA+AGG 0.429717 4.2:+21869734 None:intergenic
AATGGCATGTTTACTAGTGC+TGG 0.433342 4.2:-21869801 MS.gene39419:CDS
CATGGGTTTGAGTTCTATGC+AGG 0.456423 4.2:-21870357 MS.gene39419:CDS
CTGATCTAAAGAATCCGTAT+TGG 0.461766 4.2:-21869536 MS.gene39419:CDS
GCATGGAAAGTTCAAAGTAT+TGG 0.482582 4.2:-21869590 MS.gene39419:CDS
AGAGCTTGATATAGAGATGA+AGG 0.482587 4.2:+21869912 None:intergenic
CCACCACTTGTTGATGCTGC+TGG 0.497067 4.2:+21869612 None:intergenic
GTGTTTGTTGAATCACATCT+TGG 0.501929 4.2:+21870200 None:intergenic
AGTAGTAGCTATGGTGGTGG+TGG 0.502733 4.2:+21870016 None:intergenic
CTACGCAATGTTCCTGTTGG+TGG 0.512399 4.2:-21870089 MS.gene39419:CDS
TGTAAAAGACACTGGACTAA+AGG 0.514243 4.2:-21870119 MS.gene39419:CDS
AAAGAGCTTGAGGTTGAAAA+GGG 0.516394 4.2:+21869735 None:intergenic
TTCTGTTGTAGAAGCAAAGA+TGG 0.517894 4.2:+21869879 None:intergenic
CGCAATGTTCCTGTTGGTGG+TGG 0.518071 4.2:-21870086 MS.gene39419:CDS
ATGCAGGTTATTTCTAGCAG+TGG 0.528904 4.2:-21870341 MS.gene39419:CDS
GATGCTGCTGGTATCTCCCA+TGG 0.542943 4.2:+21869624 None:intergenic
ATATCAGAATCATCCCAATA+CGG 0.543892 4.2:+21869522 None:intergenic
TAATTCCAAGCACAAAGCCA+TGG 0.546825 4.2:-21869641 MS.gene39419:CDS
GTGGTGGTGGAAGAAGAAAC+TGG 0.552267 4.2:+21870029 None:intergenic
AGAGGAGTTCAAAACAATAG+AGG 0.554946 4.2:-21869670 MS.gene39419:CDS
ATTCAAACACCTCTTCAAGT+TGG 0.557939 4.2:-21869951 MS.gene39419:CDS
GGTTGAAAAGGGAAAGAGCA+TGG 0.558342 4.2:+21869746 None:intergenic
AGCATCAACAAGTGGTGGCA+TGG 0.561290 4.2:-21869607 MS.gene39419:CDS
CTCTCCATAGTAATAAACAT+TGG 0.562058 4.2:+21869689 None:intergenic
GAAGAAGAAACTGGTGTGGT+TGG 0.563149 4.2:+21870038 None:intergenic
GGTGCAAGTAGTAGTAGCTA+TGG 0.572305 4.2:+21870007 None:intergenic
AGTTGTGTCAAAAGAGCTTG+AGG 0.572542 4.2:+21869725 None:intergenic
GTAGAGCTTGTAAAAGACAC+TGG 0.584007 4.2:-21870127 MS.gene39419:CDS
AATTCCAAGCACAAAGCCAT+GGG 0.592739 4.2:-21869640 MS.gene39419:CDS
CAATGTTTATTACTATGGAG+AGG 0.597791 4.2:-21869688 MS.gene39419:CDS
AAAAGACACTGGACTAAAGG+TGG 0.598362 4.2:-21870116 MS.gene39419:CDS
ACTCTACGCAATGTTCCTGT+TGG 0.603022 4.2:-21870092 MS.gene39419:CDS
ATTCATATTTGTAATTGAGG+TGG 0.614882 4.2:+21869986 None:intergenic
GTGGTGGCAGAAAGAATAAG+AGG 0.637344 4.2:-21870070 MS.gene39419:CDS
CCAGCAGCATCAACAAGTGG+TGG 0.642482 4.2:-21869612 MS.gene39419:CDS
AATAACTTATCAGAAAACAA+AGG 0.648214 4.2:-21869849 MS.gene39419:CDS
GCAAGTAGTAGTAGCTATGG+TGG 0.655958 4.2:+21870010 None:intergenic
CAAGCTCTACAGAAATGGCG+AGG 0.667206 4.2:+21870140 None:intergenic
AGTAGTAGTAGCTATGGTGG+TGG 0.670325 4.2:+21870013 None:intergenic
ATACCAGCAGCATCAACAAG+TGG 0.686074 4.2:-21869615 MS.gene39419:CDS
TGTTGTAGAAGCAAAGATGG+TGG 0.693926 4.2:+21869882 None:intergenic
GGTGGAAGAAGAAACTGGTG+TGG 0.714166 4.2:+21870034 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAACTTATCAGAAAACAA+AGG - chr4.2:21870019-21870038 MS.gene39419:CDS 20.0%
! ATTCATATTTGTAATTGAGG+TGG + chr4.2:21869885-21869904 None:intergenic 25.0%
! CAAATCTTGAGATTCTAATA+AGG + chr4.2:21869570-21869589 None:intergenic 25.0%
! CTTATTAGAATCTCAAGATT+TGG - chr4.2:21869568-21869587 MS.gene39419:CDS 25.0%
! GCTATTCATATTTGTAATTG+AGG + chr4.2:21869888-21869907 None:intergenic 25.0%
! TCTTCCAATGTTTATTACTA+TGG - chr4.2:21870175-21870194 MS.gene39419:CDS 25.0%
!! TTATCAGAAAACAAAGGTTT+TGG - chr4.2:21870025-21870044 MS.gene39419:CDS 25.0%
!!! AAAGTTCAAAGTATTGGAAT+TGG - chr4.2:21870284-21870303 MS.gene39419:CDS 25.0%
!!! AAGTTCAAAGTATTGGAATT+GGG - chr4.2:21870285-21870304 MS.gene39419:CDS 25.0%
ATATCAGAATCATCCCAATA+CGG + chr4.2:21870349-21870368 None:intergenic 30.0%
CAATGTTTATTACTATGGAG+AGG - chr4.2:21870180-21870199 MS.gene39419:CDS 30.0%
CTCTCCATAGTAATAAACAT+TGG + chr4.2:21870182-21870201 None:intergenic 30.0%
TGATCTAAAGAATCCGTATT+GGG - chr4.2:21870333-21870352 MS.gene39419:CDS 30.0%
! TGTTTTCTCATTAGATGATG+AGG + chr4.2:21869605-21869624 None:intergenic 30.0%
! TTTTACAAGCTCTACAGAAA+TGG + chr4.2:21869736-21869755 None:intergenic 30.0%
!! GTTGGTAATGGTAATGTTAA+TGG - chr4.2:21870049-21870068 MS.gene39419:CDS 30.0%
AAAAGAGCTTGAGGTTGAAA+AGG + chr4.2:21870137-21870156 None:intergenic 35.0%
AAAGAGCTTGAGGTTGAAAA+GGG + chr4.2:21870136-21870155 None:intergenic 35.0%
AGAGCTTGATATAGAGATGA+AGG + chr4.2:21869959-21869978 None:intergenic 35.0%
AGAGGAGTTCAAAACAATAG+AGG - chr4.2:21870198-21870217 MS.gene39419:CDS 35.0%
ATTCAAACACCTCTTCAAGT+TGG - chr4.2:21869917-21869936 MS.gene39419:CDS 35.0%
CTGATCTAAAGAATCCGTAT+TGG - chr4.2:21870332-21870351 MS.gene39419:CDS 35.0%
GCATGGAAAGTTCAAAGTAT+TGG - chr4.2:21870278-21870297 MS.gene39419:CDS 35.0%
TGTAAAAGACACTGGACTAA+AGG - chr4.2:21869749-21869768 MS.gene39419:CDS 35.0%
TTCTGTTGTAGAAGCAAAGA+TGG + chr4.2:21869992-21870011 None:intergenic 35.0%
! GTGTTTGTTGAATCACATCT+TGG + chr4.2:21869671-21869690 None:intergenic 35.0%
! TTTTGATCACCAACTTGAAG+AGG + chr4.2:21869929-21869948 None:intergenic 35.0%
!! AGCATGGTTTGATTTTGATG+AGG + chr4.2:21870109-21870128 None:intergenic 35.0%
!! GAAAACAAAGGTTTTGGTGT+TGG - chr4.2:21870031-21870050 MS.gene39419:CDS 35.0%
!! TGGTTTGATTTTGATGAGGA+AGG + chr4.2:21870105-21870124 None:intergenic 35.0%
!! TTGGGAAGACATTGATTCAT+TGG - chr4.2:21870303-21870322 MS.gene39419:CDS 35.0%
!!! AAAGGTTTTGGTGTTGGTAA+TGG - chr4.2:21870037-21870056 MS.gene39419:CDS 35.0%
AAAAGACACTGGACTAAAGG+TGG - chr4.2:21869752-21869771 MS.gene39419:CDS 40.0%
AATGGCATGTTTACTAGTGC+TGG - chr4.2:21870067-21870086 MS.gene39419:CDS 40.0%
AATTCCAAGCACAAAGCCAT+GGG - chr4.2:21870228-21870247 MS.gene39419:CDS 40.0%
AGTTGTGTCAAAAGAGCTTG+AGG + chr4.2:21870146-21870165 None:intergenic 40.0%
CTCATTAGATGATGAGGCTT+TGG + chr4.2:21869599-21869618 None:intergenic 40.0%
GTAGAGCTTGTAAAAGACAC+TGG - chr4.2:21869741-21869760 MS.gene39419:CDS 40.0%
TAATTCCAAGCACAAAGCCA+TGG - chr4.2:21870227-21870246 MS.gene39419:CDS 40.0%
TGTTGTAGAAGCAAAGATGG+TGG + chr4.2:21869989-21870008 None:intergenic 40.0%
! GGCTTTGTGCTTGGAATTAT+TGG + chr4.2:21870226-21870245 None:intergenic 40.0%
! TTTCTAGCAGTGGACTTGAT+TGG - chr4.2:21869537-21869556 MS.gene39419:CDS 40.0%
!! ATGCAGGTTATTTCTAGCAG+TGG - chr4.2:21869527-21869546 MS.gene39419:CDS 40.0%
ACTCTACGCAATGTTCCTGT+TGG - chr4.2:21869776-21869795 MS.gene39419:CDS 45.0%
AGTAGTAGTAGCTATGGTGG+TGG + chr4.2:21869858-21869877 None:intergenic 45.0%
ATACCAGCAGCATCAACAAG+TGG - chr4.2:21870253-21870272 MS.gene39419:CDS 45.0%
GAAGAAGAAACTGGTGTGGT+TGG + chr4.2:21869833-21869852 None:intergenic 45.0%
GCAAGTAGTAGTAGCTATGG+TGG + chr4.2:21869861-21869880 None:intergenic 45.0%
GGTGCAAGTAGTAGTAGCTA+TGG + chr4.2:21869864-21869883 None:intergenic 45.0%
GGTTGAAAAGGGAAAGAGCA+TGG + chr4.2:21870125-21870144 None:intergenic 45.0%
GTGGTGGCAGAAAGAATAAG+AGG - chr4.2:21869798-21869817 MS.gene39419:CDS 45.0%
AGCATCAACAAGTGGTGGCA+TGG - chr4.2:21870261-21870280 MS.gene39419:CDS 50.0%
CAAGCTCTACAGAAATGGCG+AGG + chr4.2:21869731-21869750 None:intergenic 50.0%
CTACGCAATGTTCCTGTTGG+TGG - chr4.2:21869779-21869798 MS.gene39419:CDS 50.0%
GGTGGAAGAAGAAACTGGTG+TGG + chr4.2:21869837-21869856 None:intergenic 50.0%
TTCTTTCTGCCACCACCAAC+AGG + chr4.2:21869794-21869813 None:intergenic 50.0%
!! AGTAGTAGCTATGGTGGTGG+TGG + chr4.2:21869855-21869874 None:intergenic 50.0%
!! ATCTCCCATGGCTTTGTGCT+TGG + chr4.2:21870235-21870254 None:intergenic 50.0%
!! GTGGTGGTGGAAGAAGAAAC+TGG + chr4.2:21869842-21869861 None:intergenic 50.0%
CCAGCAGCATCAACAAGTGG+TGG - chr4.2:21870256-21870275 MS.gene39419:CDS 55.0%
GATGCTGCTGGTATCTCCCA+TGG + chr4.2:21870247-21870266 None:intergenic 55.0%
! CCACCACTTGTTGATGCTGC+TGG + chr4.2:21870259-21870278 None:intergenic 55.0%
! CGCAATGTTCCTGTTGGTGG+TGG - chr4.2:21869782-21869801 MS.gene39419:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 21869512 21870378 21869512 ID=MS.gene39419
chr4.2 mRNA 21869512 21870378 21869512 ID=MS.gene39419.t1;Parent=MS.gene39419
chr4.2 exon 21869512 21870378 21869512 ID=MS.gene39419.t1.exon1;Parent=MS.gene39419.t1
chr4.2 CDS 21869512 21870378 21869512 ID=cds.MS.gene39419.t1;Parent=MS.gene39419.t1
Gene Sequence

>MS.gene39419

ATGGGTTTGAGTTCTATGCAGGTTATTTCTAGCAGTGGACTTGATTGGAAACAAACCTTATTAGAATCTCAAGATTTGGAACTTCCAAAGCCTCATCATCTAATGAGAAAACAACAACAGCAACAAAGTCAGCAACAAGCAGAACATTTGAACTGTCCAAGATGTGATTCAACAAACACAAAGTTTTGTTACTACAACAATTACAACAAGTCTCAACCTCGCCATTTCTGTAGAGCTTGTAAAAGACACTGGACTAAAGGTGGAACTCTACGCAATGTTCCTGTTGGTGGTGGCAGAAAGAATAAGAGGATCAAGAAACCAACCACACCAGTTTCTTCTTCCACCACCACCATAGCTACTACTACTTGCACCACCTCAATTACAAATATGAATAGCAATATGACAATTCAAACACCTCTTCAAGTTGGTGATCAAAAAAGCATTCCTTCATCTCTATATCAAGCTCTCATTCATCCACCATCTTTGCTTCTACAACAGAATATGATGAATAACTTATCAGAAAACAAAGGTTTTGGTGTTGGTAATGGTAATGTTAATGGCATGTTTACTAGTGCTGGTTCAACTTTGCACCTTCCTCATCAAAATCAAACCATGCTCTTTCCCTTTTCAACCTCAAGCTCTTTTGACACAACTACTTGTTCATCTTCCAATGTTTATTACTATGGAGAGGAGTTCAAAACAATAGAGGAACCAATAATTCCAAGCACAAAGCCATGGGAGATACCAGCAGCATCAACAAGTGGTGGCATGGAAAGTTCAAAGTATTGGAATTGGGAAGACATTGATTCATTGGTTTCAACTGATCTAAAGAATCCGTATTGGGATGATTCTGATATCAAACCTTGA
Protein sequence

>MS.gene39419.t1

MGLSSMQVISSSGLDWKQTLLESQDLELPKPHHLMRKQQQQQSQQQAEHLNCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRIKKPTTPVSSSTTTIATTTCTTSITNMNSNMTIQTPLQVGDQKSIPSSLYQALIHPPSLLLQQNMMNNLSENKGFGVGNGNVNGMFTSAGSTLHLPHQNQTMLFPFSTSSSFDTTTCSSSNVYYYGEEFKTIEEPIIPSTKPWEIPAASTSGGMESSKYWNWEDIDSLVSTDLKNPYWDDSDIKP