AlfalfaGEDB | MS.gene39465

M. sativa cultivar XinJiangDaYe / MS.gene39465

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39465.t1	XP_013457027.1	90.6	351	32	1	1	350	1	351	5.10E-189	670.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39465.t1	Q2MHE4	52.6	308	140	3	6	309	49	354	4.8e-95	349.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39465.t1	A0A072UPS7	90.6	351	32	1	1	350	1	351	3.7e-189	670.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39465.t1	MTR_4g088755	90.598	351	32	1	1	350	1	351	0.0	669
MS.gene39465.t1	MTR_4g088745	89.888	356	30	2	1	350	1	356	0.0	664
MS.gene39465.t1	MTR_4g088750	84.401	359	40	3	3	347	151	507	0.0	625
MS.gene39465.t1	MTR_2g013900	78.593	327	68	2	21	347	144	468	0.0	544
MS.gene39465.t1	MTR_4g132860	53.147	286	132	1	24	309	65	348	2.68e-118	347
MS.gene39465.t1	MTR_3g078000	53.846	286	130	1	29	314	47	330	1.14e-114	337
MS.gene39465.t1	MTR_4g105770	51.986	277	131	1	29	305	48	322	1.32e-111	329
MS.gene39465.t1	MTR_8g100085	49.259	270	135	1	30	299	124	391	1.73e-100	303
MS.gene39465.t1	MTR_3g034100	47.407	270	140	1	30	299	73	340	1.07e-97	294
MS.gene39465.t1	MTR_7g072710	42.336	274	145	4	34	298	40	309	6.88e-78	243

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39465.t1	AT5G58950	68.471	314	98	1	21	334	190	502	2.15e-161	462
MS.gene39465.t1	AT3G46930	57.667	300	123	2	30	328	157	453	3.16e-123	363
MS.gene39465.t1	AT3G46930	57.667	300	123	2	30	328	192	488	4.76e-123	364
MS.gene39465.t1	AT1G62400	52.597	308	140	3	6	309	49	354	2.27e-119	350
MS.gene39465.t1	AT3G46930	56.504	246	99	3	30	274	96	334	1.59e-93	282
MS.gene39465.t1	AT2G24360	47.101	276	144	1	27	302	118	391	2.70e-93	284
MS.gene39465.t1	AT3G46930	56.504	246	99	3	30	274	157	395	7.18e-93	283
MS.gene39465.t1	AT3G46930	57.447	235	96	2	30	263	192	423	9.18e-93	283
MS.gene39465.t1	AT4G31170	46.154	273	145	1	30	302	122	392	1.25e-92	283
MS.gene39465.t1	AT4G31170	46.154	273	145	1	30	302	122	392	1.25e-92	283

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Find 80 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAAATCCTACGGGAGAA+AGG	0.477465	4.2:+22332987	MS.gene39465:CDS
AAGGTTGATGTCTATAGTTT+TGG	0.266404	4.2:+22333006	MS.gene39465:CDS
ACAGCAAAAGCAGCCTGGAC+GGG	0.540529	4.2:-22333081	None:intergenic
ACCGTGCTACAAAACCCTTG+TGG	0.662565	4.2:+22333763	MS.gene39465:CDS
ACGACCTTGGTACCTACCGT+TGG	0.545187	4.2:+22332944	MS.gene39465:CDS
ACGGGAGTCATATCCTCGTA+TGG	0.616055	4.2:-22333063	None:intergenic
AGCTATGCGAGCTTTAATTG+AGG	0.576634	4.2:+22333642	MS.gene39465:CDS
ATAGCTGGTGGGCAGTTTGA+AGG	0.484794	4.2:-22333625	None:intergenic
ATATCTATCAGAAGGTTCAT+TGG	0.457733	4.2:+22332705	MS.gene39465:CDS
ATCACAGAATATCTATCAGA+AGG	0.582967	4.2:+22332697	MS.gene39465:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGACAGTATTAGAATAC+TGG	-	chr4.2:22333572-22333591	None:intergenic	30.0%
ATAAAAAAGGGCTTCTTCAT+TGG	+	chr4.2:22333794-22333813	MS.gene39465:CDS	30.0%
ATATCTATCAGAAGGTTCAT+TGG	+	chr4.2:22332705-22332724	MS.gene39465:CDS	30.0%
ATCACAGAATATCTATCAGA+AGG	+	chr4.2:22332697-22332716	MS.gene39465:CDS	30.0%
ATTAGAGAAACAATTCGTCA+CGG	+	chr4.2:22332335-22332354	MS.gene39465:CDS	30.0%
CTAAATCTCAAAACAGCATT+TGG	-	chr4.2:22333427-22333446	None:intergenic	30.0%
GAAATTTACGATTACAAGGA+AGG	+	chr4.2:22332591-22332610	MS.gene39465:intron	30.0%
TAGACCAAAGTATACAACAA+AGG	-	chr4.2:22332535-22332554	None:intergenic	30.0%
TATCTATCAGAAGGTTCATT+GGG	+	chr4.2:22332706-22332725	MS.gene39465:CDS	30.0%
TCTGTGATAACACAATAAAC+AGG	-	chr4.2:22332685-22332704	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	22332090	22333891	22332090	ID=MS.gene39465
chr4.2	mRNA	22332090	22333891	22332090	ID=MS.gene39465.t1;Parent=MS.gene39465
chr4.2	exon	22332090	22332401	22332090	ID=MS.gene39465.t1.exon1;Parent=MS.gene39465.t1
chr4.2	CDS	22332090	22332401	22332090	ID=cds.MS.gene39465.t1;Parent=MS.gene39465.t1
chr4.2	exon	22332658	22333113	22332658	ID=MS.gene39465.t1.exon2;Parent=MS.gene39465.t1
chr4.2	CDS	22332658	22333113	22332658	ID=cds.MS.gene39465.t1;Parent=MS.gene39465.t1
chr4.2	exon	22333607	22333891	22333607	ID=MS.gene39465.t1.exon3;Parent=MS.gene39465.t1
chr4.2	CDS	22333607	22333891	22333607	ID=cds.MS.gene39465.t1;Parent=MS.gene39465.t1

Gene Sequence

>MS.gene39465

ATGGCAACAACAGTTAAGCACTTTTCATCGATGAGATTCATTGACAAGTCGAAGAACCCAAGGGTTACTGCCGTTGAAACATCTGAGGATGAATGGAATGTTGACCTCTCTAAACTCTTTGTTGGTCATAGGTTTGCTCATGGAGCTCATAGCAGGCTTTACCATGGTTTGTATGACGACGAACCTGTTGCCGTCAAAAATATCAAGGTACCAGATGATGATGAAGACGGAACAATGGCTGCTACATTAGAGAAACAATTCGTCACGGAAGTCACGCTTTTATCTCGCCTTCACCATCCAAATGTTCTTAAGGTAATTAAATTCAACTGTTTCTCTTCTTTTGTATAGTTTTTTTTTTTTTTAAATGGAATATAAATATATAAGGAAAGTTAGGTACCATATAGAAAAGTCTTTGTCTAATTAGGGATACTATTTTGTACATCCTTTGTTGTATACTTTGGTCTAATTATATTATGCAGTTCATACTTCAGATCATGTAGAGAAATTTACGATTACAAGGAAGGTATTTTATACATGATTTCTCATATATCTTCATCTGATTGTGCAGTTGGTAGCAGCATGCAGAAAGCCGCCTGTTTATTGTGTTATCACAGAATATCTATCAGAAGGTTCATTGGGGGCATATTTGCATAAGTTGGAGGGGAAAACCATTTCTCTACAAAAGCTAATTGCTTTTTCTCTTGATATCGCTCGTGGAATGGAATATATACACTCCCAAGGTGTCATTCATCGAGACCTTAAGCCAGAGAATGTCCTTATTAATGGTGACTTTCACCTTAAAATTGCTGATTTTGGCATTGCTTGTGAGGAAGCACAATGCGAGTTACTTGCTGACGACCTTGGTACCTACCGTTGGATGGCACCTGAGATGATCAAAAGAAAATCCTACGGGAGAAAGGTTGATGTCTATAGTTTTGGGCTTATGTTATGGGAGATGCTCACCGGTAGAATACCATACGAGGATATGACTCCCGTCCAGGCTGCTTTTGCTGTCGTAAATAAGGTATGTTCCTTTGCAATTAAGTCATGTGAATTTGCAATATGAATAGTGAAACCTCGTTAATATTTATAATGACTTATCATTCTTCATGTTACAGCAATTTTTTTAAAGATTCTTTCACTTAATTATATGACAATTACAAAAATTTGTTGAATTTTAGTTTGCATATGTTGTCTCATGATTGCTAAAGTAGGCATTGTTTCTTGGTTTTCACCTTTTGAAAAAATCAAACATAATAATACCGTGGATTAAATTGCTAGTTTTCTACCTTTTGATTTCTTAAATTAAAAGTATACAGTACTTTATAGCAAAACCAAATGCTGTTTTGAGATTTAGCCAAATCCATGGTGAGATATCTTCATTGGTTTGAAAACAACGGTGGAGTGGTAGAATACTGAATGATTATATCTTAATTTGGTAGTTTATGCATCTTATTTTGAATAAAAAGTCAAGGTTTGCCAGTATTCTAATACTGTCTCTTATGTTTTTTTTTCAGAATTCAAGGCCTGTTATTCCTTCAAACTGCCCACCAGCTATGCGAGCTTTAATTGAGGAATGTTGGTCCTTGAATCCGGACAAAAGGCCTGAGTTCTGGCAGGTTGTTAAGGTGTTAGAGCAATTTGAATCCTCGCTTGCTCGTGATGGATCATTGACCGTGCTACAAAACCCTTGTGGGCAAGATCATAAAAAAGGGCTTCTTCATTGGATTCACAAGCTTAGTCCTGCACATCATCATAGTAGTGGTTTTGTGGCTAAACCAAAATTTACATGTATATTCTGA

Protein sequence

>MS.gene39465.t1

MATTVKHFSSMRFIDKSKNPRVTAVETSEDEWNVDLSKLFVGHRFAHGAHSRLYHGLYDDEPVAVKNIKVPDDDEDGTMAATLEKQFVTEVTLLSRLHHPNVLKLVAACRKPPVYCVITEYLSEGSLGAYLHKLEGKTISLQKLIAFSLDIARGMEYIHSQGVIHRDLKPENVLINGDFHLKIADFGIACEEAQCELLADDLGTYRWMAPEMIKRKSYGRKVDVYSFGLMLWEMLTGRIPYEDMTPVQAAFAVVNKNSRPVIPSNCPPAMRALIEECWSLNPDKRPEFWQVVKVLEQFESSLARDGSLTVLQNPCGQDHKKGLLHWIHKLSPAHHHSSGFVAKPKFTCIF